Query 019418
Match_columns 341
No_of_seqs 381 out of 2564
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.3E-33 8E-38 242.5 16.9 166 3-252 12-180 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 7.2E-32 2.5E-36 223.2 19.2 162 7-250 1-164 (166)
3 1fxl_A Paraneoplastic encephal 100.0 1.3E-31 4.4E-36 221.9 20.5 156 5-240 1-159 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-31 4.8E-36 222.1 19.9 156 5-240 2-160 (168)
5 3tyt_A Heterogeneous nuclear r 100.0 2.8E-31 9.6E-36 227.7 21.1 179 5-247 3-201 (205)
6 1l3k_A Heterogeneous nuclear r 100.0 4.7E-31 1.6E-35 224.6 18.8 170 4-253 11-183 (196)
7 2yh0_A Splicing factor U2AF 65 100.0 7.3E-30 2.5E-34 217.6 22.8 181 4-252 2-193 (198)
8 2qfj_A FBP-interacting repress 100.0 3.1E-30 1E-34 222.9 20.6 176 5-253 27-205 (216)
9 3nmr_A Cugbp ELAV-like family 100.0 1.7E-30 5.7E-35 217.0 18.3 154 5-238 2-163 (175)
10 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-29 4.1E-34 228.4 24.0 178 3-249 6-279 (282)
11 2cjk_A Nuclear polyadenylated 100.0 9.5E-31 3.3E-35 217.0 14.6 161 4-251 1-164 (167)
12 2g4b_A Splicing factor U2AF 65 100.0 8.4E-30 2.9E-34 212.3 18.9 157 4-248 2-169 (172)
13 2adc_A Polypyrimidine tract-bi 100.0 2.9E-29 1E-33 219.2 21.4 176 4-250 32-225 (229)
14 1qm9_A Polypyrimidine tract-bi 100.0 3.9E-29 1.3E-33 213.4 19.6 168 5-239 2-187 (198)
15 1fje_B Nucleolin RBD12, protei 100.0 2.8E-30 9.6E-35 216.0 11.9 161 3-251 10-172 (175)
16 3smz_A Protein raver-1, ribonu 100.0 2.3E-28 7.8E-33 220.3 18.9 168 4-253 93-264 (284)
17 3sde_A Paraspeckle component 1 100.0 3.7E-28 1.3E-32 216.4 18.0 158 4-251 20-177 (261)
18 3smz_A Protein raver-1, ribonu 100.0 7.3E-28 2.5E-32 217.0 19.9 154 4-251 20-173 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 9.9E-28 3.4E-32 217.0 18.3 170 5-251 116-289 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-27 5.4E-32 215.6 18.3 155 4-251 39-195 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.9E-24 9.9E-29 167.0 10.0 109 5-125 4-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.9 9.3E-22 3.2E-26 148.5 10.2 78 5-82 18-98 (99)
23 3pgw_S U1-70K; protein-RNA com 99.9 2.5E-20 8.6E-25 176.7 20.0 81 4-84 100-183 (437)
24 3lqv_A PRE-mRNA branch site pr 99.9 1.3E-21 4.3E-26 152.0 8.9 106 2-135 4-109 (115)
25 2hvz_A Splicing factor, argini 99.8 7.3E-21 2.5E-25 144.2 9.3 100 7-118 1-100 (101)
26 1x4a_A Splicing factor, argini 99.8 3.1E-20 1E-24 142.7 12.3 84 2-85 18-101 (109)
27 2lxi_A RNA-binding protein 10; 99.8 7.8E-21 2.7E-25 141.1 7.8 80 6-85 1-85 (91)
28 3s8s_A Histone-lysine N-methyl 99.8 2.6E-20 8.9E-25 143.2 10.6 81 3-83 3-86 (110)
29 1whw_A Hypothetical protein ri 99.8 9.9E-20 3.4E-24 137.3 12.9 83 3-85 5-90 (99)
30 2fy1_A RNA-binding motif prote 99.8 6.5E-20 2.2E-24 142.5 12.2 85 1-85 2-88 (116)
31 1sjq_A Polypyrimidine tract-bi 99.8 3.9E-20 1.3E-24 139.8 9.9 80 3-85 13-94 (105)
32 3pgw_S U1-70K; protein-RNA com 99.8 5.7E-20 1.9E-24 174.3 13.5 162 23-251 9-180 (437)
33 2wbr_A GW182, gawky, LD47780P; 99.8 5.8E-20 2E-24 132.6 9.9 75 4-81 5-79 (89)
34 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-19 6E-24 137.0 13.1 83 3-85 12-95 (103)
35 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-19 8E-24 139.1 13.4 84 3-86 12-98 (115)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.8E-20 3E-24 133.5 10.1 79 3-81 4-85 (85)
37 3md1_A Nuclear and cytoplasmic 99.8 1E-19 3.5E-24 132.6 10.3 78 6-83 1-81 (83)
38 2kn4_A Immunoglobulin G-bindin 99.8 3.2E-19 1.1E-23 146.3 14.5 147 36-253 3-150 (158)
39 2x1f_A MRNA 3'-END-processing 99.8 1.2E-19 4.1E-24 136.1 10.8 80 5-84 1-83 (96)
40 2dnz_A Probable RNA-binding pr 99.8 2.4E-19 8.1E-24 134.1 12.4 83 3-85 2-87 (95)
41 2dnm_A SRP46 splicing factor; 99.8 1.2E-19 4E-24 138.0 10.7 83 3-85 10-95 (103)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.4E-20 2.9E-24 134.3 9.6 80 4-83 4-86 (87)
43 2cpf_A RNA binding motif prote 99.8 1E-19 3.5E-24 137.0 10.2 83 3-85 2-90 (98)
44 2lkz_A RNA-binding protein 5; 99.8 4.4E-20 1.5E-24 137.8 8.0 80 3-82 6-94 (95)
45 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.9E-24 138.1 10.4 84 2-85 11-95 (103)
46 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-19 5.5E-24 135.4 11.1 81 4-84 7-91 (96)
47 2a3j_A U1 small nuclear ribonu 99.8 1.1E-19 3.7E-24 143.1 10.5 81 3-83 26-110 (127)
48 1nu4_A U1A RNA binding domain; 99.8 4.4E-20 1.5E-24 138.7 8.0 84 1-84 3-90 (97)
49 2dgv_A HnRNP M, heterogeneous 99.8 1E-19 3.5E-24 135.3 9.8 83 3-85 5-88 (92)
50 2dgs_A DAZ-associated protein 99.8 2.7E-19 9.3E-24 134.9 12.2 82 3-85 7-91 (99)
51 1x5t_A Splicing factor 3B subu 99.8 1.4E-19 4.9E-24 135.6 10.6 83 3-85 2-88 (96)
52 2do4_A Squamous cell carcinoma 99.8 1.7E-19 5.7E-24 136.4 10.9 82 3-84 14-97 (100)
53 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.9E-24 137.2 10.5 82 4-85 10-94 (102)
54 1x5u_A Splicing factor 3B subu 99.8 2.3E-19 7.9E-24 136.8 11.7 83 3-85 12-97 (105)
55 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5.2E-24 135.1 10.3 77 4-83 19-97 (100)
56 2cq3_A RNA-binding protein 9; 99.8 4.6E-19 1.6E-23 134.7 13.2 83 3-85 12-95 (103)
57 2cq0_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 137.8 10.1 82 4-85 13-97 (103)
58 2cqd_A RNA-binding region cont 99.8 5.9E-19 2E-23 137.1 14.0 81 3-84 14-97 (116)
59 2dgu_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 134.8 12.9 79 4-87 9-87 (103)
60 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-19 7.4E-24 134.1 10.9 78 4-81 14-94 (94)
61 2do0_A HnRNP M, heterogeneous 99.8 4.9E-19 1.7E-23 137.1 13.1 83 3-85 12-96 (114)
62 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.2E-24 136.3 10.3 82 4-85 10-94 (102)
63 2div_A TRNA selenocysteine ass 99.8 1.4E-19 4.7E-24 136.6 9.2 83 2-84 5-95 (99)
64 2dgt_A RNA-binding protein 30; 99.8 4.9E-19 1.7E-23 131.6 11.9 78 3-85 7-84 (92)
65 1x4d_A Matrin 3; structural ge 99.8 1.3E-19 4.4E-24 136.8 8.6 79 3-84 12-93 (102)
66 4a8x_A RNA-binding protein wit 99.8 3E-19 1E-23 131.5 10.5 81 4-84 2-86 (88)
67 2ywk_A Putative RNA-binding pr 99.8 1.8E-19 6.3E-24 134.7 9.4 80 3-82 13-94 (95)
68 1x4c_A Splicing factor, argini 99.8 1E-18 3.5E-23 133.9 13.7 79 3-85 12-95 (108)
69 2ad9_A Polypyrimidine tract-bi 99.8 2.4E-19 8.1E-24 138.8 10.1 80 3-85 28-109 (119)
70 2cq1_A PTB-like protein L; RRM 99.8 5.4E-19 1.9E-23 133.4 11.9 80 3-85 12-93 (101)
71 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-19 6.4E-24 139.7 9.6 82 4-85 23-107 (115)
72 1wi8_A EIF-4B, eukaryotic tran 99.8 3.4E-19 1.2E-23 135.6 10.8 81 3-85 12-96 (104)
73 2cqc_A Arginine/serine-rich sp 99.8 2.1E-19 7.2E-24 134.4 9.4 80 3-82 12-94 (95)
74 2dnh_A Bruno-like 5, RNA bindi 99.8 3.5E-19 1.2E-23 135.8 10.7 82 4-85 13-99 (105)
75 2cph_A RNA binding motif prote 99.8 5.7E-19 2E-23 135.0 11.8 83 3-85 12-99 (107)
76 2i2y_A Fusion protein consists 99.8 9E-19 3.1E-23 142.4 13.6 137 42-252 10-147 (150)
77 1p27_B RNA-binding protein 8A; 99.8 2.2E-19 7.4E-24 137.2 9.2 81 4-84 21-104 (106)
78 2dgp_A Bruno-like 4, RNA bindi 99.8 3.1E-19 1E-23 136.4 10.0 83 3-85 10-98 (106)
79 2dnq_A RNA-binding protein 4B; 99.8 5.9E-19 2E-23 130.7 11.2 78 3-85 5-82 (90)
80 1x4h_A RNA-binding protein 28; 99.8 6.2E-19 2.1E-23 135.8 11.8 82 4-85 13-103 (111)
81 1s79_A Lupus LA protein; RRM, 99.8 2E-19 6.8E-24 136.5 8.4 79 3-82 8-88 (103)
82 1oo0_B CG8781-PA, drosophila Y 99.8 4.1E-19 1.4E-23 136.6 10.1 81 4-84 24-107 (110)
83 3ns6_A Eukaryotic translation 99.8 7.8E-20 2.7E-24 138.2 5.8 79 4-82 4-92 (100)
84 2dnp_A RNA-binding protein 14; 99.8 7.3E-19 2.5E-23 130.1 10.9 78 3-85 6-83 (90)
85 3p5t_L Cleavage and polyadenyl 99.8 5.1E-20 1.7E-24 136.5 4.5 78 7-84 2-84 (90)
86 1wex_A Hypothetical protein (r 99.8 6.7E-19 2.3E-23 133.7 10.8 79 4-85 13-93 (104)
87 2dng_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 133.5 11.0 81 3-85 12-95 (103)
88 3ulh_A THO complex subunit 4; 99.8 5.1E-19 1.8E-23 135.3 10.1 78 4-81 27-106 (107)
89 2jvr_A Nucleolar protein 3; RN 99.8 4.2E-19 1.4E-23 136.2 9.5 79 4-83 26-105 (111)
90 2nlw_A Eukaryotic translation 99.8 5E-19 1.7E-23 135.0 9.9 80 4-83 13-100 (105)
91 2khc_A Testis-specific RNP-typ 99.8 4.3E-19 1.5E-23 138.3 9.7 79 3-81 37-118 (118)
92 1why_A Hypothetical protein ri 99.8 7.5E-19 2.6E-23 132.0 10.6 79 3-84 14-94 (97)
93 2cpi_A CCR4-NOT transcription 99.8 2.9E-19 1E-23 137.7 8.6 81 4-84 13-102 (111)
94 2kxn_B Transformer-2 protein h 99.8 3.1E-19 1.1E-23 141.2 8.8 82 3-84 43-127 (129)
95 2cpe_A RNA-binding protein EWS 99.8 6.5E-19 2.2E-23 136.2 10.4 83 3-85 12-105 (113)
96 3ucg_A Polyadenylate-binding p 99.8 8.9E-19 3.1E-23 129.3 10.6 78 5-83 5-85 (89)
97 2err_A Ataxin-2-binding protei 99.8 5.6E-19 1.9E-23 135.6 9.6 81 3-83 26-107 (109)
98 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-18 4.2E-23 139.7 12.0 84 3-86 39-125 (139)
99 2jrs_A RNA-binding protein 39; 99.8 4.6E-19 1.6E-23 135.9 9.0 81 3-83 23-106 (108)
100 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 128.3 10.5 77 3-80 8-87 (87)
101 2dhg_A TRNA selenocysteine ass 99.8 6.4E-19 2.2E-23 134.1 9.6 83 3-85 6-92 (104)
102 2krb_A Eukaryotic translation 99.8 2.4E-19 8.3E-24 130.0 6.9 72 6-77 1-80 (81)
103 3ex7_B RNA-binding protein 8A; 99.8 6.3E-19 2.2E-23 139.0 9.7 82 4-85 20-104 (126)
104 2la6_A RNA-binding protein FUS 99.8 5.6E-19 1.9E-23 133.2 8.9 79 3-81 10-99 (99)
105 2dis_A Unnamed protein product 99.8 1.9E-18 6.7E-23 132.5 11.9 83 3-85 5-94 (109)
106 1x4g_A Nucleolysin TIAR; struc 99.8 1.8E-18 6.3E-23 132.7 11.7 79 4-85 23-101 (109)
107 2dh8_A DAZ-associated protein 99.8 7E-19 2.4E-23 134.1 9.1 82 3-85 13-97 (105)
108 2xnq_A Nuclear polyadenylated 99.8 1.9E-18 6.6E-23 129.7 11.1 76 3-83 19-95 (97)
109 1x4f_A Matrin 3; structural ge 99.8 2.9E-19 9.9E-24 136.8 6.5 80 2-84 21-103 (112)
110 2jvo_A Nucleolar protein 3; nu 99.8 1.2E-18 4E-23 133.6 9.8 77 3-84 28-104 (108)
111 2cpd_A Apobec-1 stimulating pr 99.8 4E-18 1.4E-22 128.5 12.2 77 4-85 13-91 (99)
112 2rs2_A Musashi-1, RNA-binding 99.8 2.4E-18 8.3E-23 132.1 11.1 80 4-84 23-105 (109)
113 2fc9_A NCL protein; structure 99.8 1.8E-18 6.2E-23 130.8 10.2 81 4-85 13-93 (101)
114 2kt5_A RNA and export factor-b 99.8 2.7E-18 9.1E-23 135.0 11.4 82 4-85 33-116 (124)
115 2cpj_A Non-POU domain-containi 99.8 2.2E-18 7.5E-23 129.9 10.4 78 4-84 13-90 (99)
116 3n9u_C Cleavage and polyadenyl 99.8 1.3E-18 4.5E-23 142.1 9.9 78 5-82 54-136 (156)
117 2ytc_A PRE-mRNA-splicing facto 99.8 1.7E-18 5.7E-23 126.7 9.5 76 3-81 9-85 (85)
118 1x4e_A RNA binding motif, sing 99.8 2.2E-19 7.6E-24 131.5 4.7 79 3-81 2-83 (85)
119 2mss_A Protein (musashi1); RNA 99.8 5.8E-19 2E-23 126.0 6.7 72 8-80 1-75 (75)
120 2kvi_A Nuclear polyadenylated 99.8 9.3E-19 3.2E-23 131.2 8.1 78 3-85 7-85 (96)
121 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.6E-18 8.7E-23 140.7 11.4 82 4-85 37-121 (156)
122 2cq2_A Hypothetical protein LO 99.8 2.3E-18 7.7E-23 131.9 10.2 80 2-84 21-107 (114)
123 2dgw_A Probable RNA-binding pr 99.8 2.6E-18 8.9E-23 127.4 10.3 80 3-84 7-88 (91)
124 2cqp_A RNA-binding protein 12; 99.8 6.1E-19 2.1E-23 132.7 6.9 79 4-82 13-94 (98)
125 2cq4_A RNA binding motif prote 99.8 1.9E-18 6.6E-23 133.7 9.8 78 5-83 24-104 (114)
126 2ek1_A RNA-binding protein 12; 99.8 4.4E-19 1.5E-23 132.6 5.9 78 5-82 14-94 (95)
127 1whx_A Hypothetical protein ri 99.8 9.5E-19 3.3E-23 134.8 7.9 77 4-83 8-84 (111)
128 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.9E-23 134.2 9.3 81 4-85 23-107 (115)
129 1p1t_A Cleavage stimulation fa 99.8 9.3E-19 3.2E-23 133.2 7.4 80 5-84 7-89 (104)
130 2la4_A Nuclear and cytoplasmic 99.8 1.4E-18 4.7E-23 131.5 8.1 76 4-82 25-100 (101)
131 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.5E-23 130.2 8.4 79 4-84 17-95 (97)
132 2cqh_A IGF-II mRNA-binding pro 99.8 2.6E-18 8.7E-23 128.0 9.0 80 2-85 4-85 (93)
133 1fjc_A Nucleolin RBD2, protein 99.8 1.1E-18 3.8E-23 130.7 7.1 80 3-84 13-92 (96)
134 1wg5_A Heterogeneous nuclear r 99.8 3E-18 1E-22 130.4 9.5 79 4-83 13-94 (104)
135 2cqg_A TDP-43, TAR DNA-binding 99.8 8.1E-18 2.8E-22 127.7 11.9 81 3-85 12-95 (103)
136 2m2b_A RNA-binding protein 10; 99.8 8.8E-19 3E-23 139.1 6.7 82 3-85 20-110 (131)
137 2jwn_A Embryonic polyadenylate 99.8 3.9E-18 1.3E-22 134.0 10.4 79 5-84 35-116 (124)
138 1wf1_A RNA-binding protein RAL 99.8 4E-18 1.4E-22 131.1 10.2 75 5-84 26-101 (110)
139 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9E-19 3.1E-23 125.6 6.1 73 7-80 1-76 (77)
140 2kn4_A Immunoglobulin G-bindin 99.8 5.9E-18 2E-22 138.7 11.8 82 4-85 68-152 (158)
141 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-18 4.6E-23 131.4 7.2 78 4-83 17-98 (100)
142 3beg_B Splicing factor, argini 99.7 4.4E-18 1.5E-22 131.9 10.0 81 105-252 12-93 (115)
143 2cpy_A RNA-binding protein 12; 99.7 2.2E-18 7.7E-23 133.4 8.3 80 3-83 12-94 (114)
144 2lea_A Serine/arginine-rich sp 99.7 1.6E-18 5.3E-23 138.3 7.6 82 4-85 45-129 (135)
145 1x4b_A Heterogeneous nuclear r 99.7 6E-18 2.1E-22 131.3 10.7 80 5-85 26-108 (116)
146 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.6E-18 1.9E-22 135.9 10.8 78 3-80 60-140 (140)
147 2fc8_A NCL protein; structure 99.7 3.2E-18 1.1E-22 129.7 8.8 83 3-85 12-94 (102)
148 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4E-18 1.4E-22 140.8 10.1 81 4-84 70-153 (165)
149 1x5o_A RNA binding motif, sing 99.7 4.4E-18 1.5E-22 131.7 9.3 79 4-82 23-111 (114)
150 2ki2_A SS-DNA binding protein 99.7 6.6E-19 2.2E-23 130.4 4.4 77 7-84 2-81 (90)
151 1wg1_A KIAA1579 protein, homol 99.7 3.4E-18 1.2E-22 126.0 8.0 77 3-83 2-78 (88)
152 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 3.9E-22 124.7 10.8 79 3-84 5-83 (94)
153 3egn_A RNA-binding protein 40; 99.7 2.7E-18 9.3E-23 138.4 7.7 82 3-84 42-131 (143)
154 2db1_A Heterogeneous nuclear r 99.7 2.7E-18 9.3E-23 133.7 7.4 78 4-82 15-97 (118)
155 3beg_B Splicing factor, argini 99.7 5E-18 1.7E-22 131.6 8.8 76 4-83 14-94 (115)
156 1wez_A HnRNP H', FTP-3, hetero 99.7 3.1E-18 1.1E-22 129.8 7.4 80 3-84 12-93 (102)
157 1x5p_A Negative elongation fac 99.7 2.3E-17 8E-22 123.8 12.1 77 4-85 13-89 (97)
158 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-18 5.1E-23 131.3 4.4 80 4-84 15-96 (101)
159 2i2y_A Fusion protein consists 99.7 8.7E-18 3E-22 136.6 9.3 78 4-83 71-148 (150)
160 1iqt_A AUF1, heterogeneous nuc 99.7 2.9E-18 9.9E-23 122.3 5.7 72 8-80 1-75 (75)
161 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.1E-22 127.8 9.3 75 6-82 16-92 (109)
162 1wel_A RNA-binding protein 12; 99.7 1.6E-18 5.6E-23 136.2 4.5 78 4-82 23-103 (124)
163 2hgl_A HNRPF protein, heteroge 99.7 4.6E-18 1.6E-22 135.3 7.0 78 4-82 42-124 (136)
164 2diu_A KIAA0430 protein; struc 99.7 1.3E-17 4.3E-22 121.5 8.4 74 4-84 6-85 (96)
165 2e44_A Insulin-like growth fac 99.7 1.8E-17 6.1E-22 124.1 9.3 79 4-83 13-92 (96)
166 3q2s_C Cleavage and polyadenyl 99.7 8.2E-18 2.8E-22 146.2 8.4 78 5-82 67-149 (229)
167 2f3j_A RNA and export factor b 99.7 1.6E-17 5.6E-22 138.5 9.5 80 4-83 86-167 (177)
168 3zzy_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 128.5 10.3 76 7-84 29-107 (130)
169 2lmi_A GRSF-1, G-rich sequence 99.7 5.3E-18 1.8E-22 129.7 5.6 79 3-82 8-91 (107)
170 2hzc_A Splicing factor U2AF 65 99.7 2.2E-17 7.5E-22 121.2 8.6 73 3-79 3-86 (87)
171 1sjr_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 133.3 10.2 78 6-84 46-125 (164)
172 2dha_A FLJ20171 protein; RRM d 99.7 4.8E-18 1.7E-22 132.7 5.1 79 3-82 20-104 (123)
173 3d2w_A TAR DNA-binding protein 99.7 4.5E-17 1.5E-21 120.2 10.0 76 3-84 8-85 (89)
174 1x4c_A Splicing factor, argini 99.7 2.5E-16 8.6E-21 120.5 13.8 83 103-252 9-92 (108)
175 2lcw_A RNA-binding protein FUS 99.5 9.9E-19 3.4E-23 135.8 0.0 83 3-85 4-97 (116)
176 2e5i_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 126.2 10.1 74 8-84 27-103 (124)
177 2hgn_A Heterogeneous nuclear r 99.7 7.9E-18 2.7E-22 134.3 5.0 79 4-84 44-124 (139)
178 2xs2_A Deleted in azoospermia- 99.7 1.7E-17 5.9E-22 125.7 6.6 79 4-84 7-87 (102)
179 1wf0_A TDP-43, TAR DNA-binding 99.7 3.6E-17 1.2E-21 120.4 7.8 79 3-85 2-80 (88)
180 2hgm_A HNRPF protein, heteroge 99.7 6.1E-17 2.1E-21 126.8 8.1 77 4-82 40-120 (126)
181 2bz2_A Negative elongation fac 99.7 1.1E-16 3.7E-21 125.0 9.1 76 4-84 37-112 (121)
182 2dnl_A Cytoplasmic polyadenyla 99.7 9.7E-17 3.3E-21 124.1 8.3 76 3-81 5-86 (114)
183 4f02_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 137.3 9.7 79 5-83 102-181 (213)
184 2pe8_A Splicing factor 45; RRM 99.7 2.7E-16 9.3E-21 119.4 10.0 80 3-82 5-93 (105)
185 3md3_A Nuclear and cytoplasmic 99.7 2.2E-16 7.6E-21 129.7 10.3 79 3-81 84-165 (166)
186 2qfj_A FBP-interacting repress 99.7 3E-16 1E-20 134.8 10.6 82 4-85 123-207 (216)
187 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.2E-16 1.1E-20 129.4 10.0 137 50-252 11-151 (165)
188 2j8a_A Histone-lysine N-methyl 99.7 2.1E-16 7.1E-21 121.7 7.7 77 7-83 3-96 (136)
189 2g4b_A Splicing factor U2AF 65 99.6 4E-16 1.4E-20 129.2 9.0 76 5-80 93-171 (172)
190 2yh0_A Splicing factor U2AF 65 99.6 6.5E-16 2.2E-20 130.9 10.3 81 4-84 112-195 (198)
191 3u1l_A PRE-mRNA-splicing facto 99.6 3.5E-16 1.2E-20 135.5 8.0 78 4-84 132-230 (240)
192 2cjk_A Nuclear polyadenylated 99.6 3.8E-16 1.3E-20 128.6 8.0 78 5-83 86-166 (167)
193 1fje_B Nucleolin RBD12, protei 99.6 5.4E-16 1.9E-20 128.9 8.9 78 4-83 97-174 (175)
194 2lea_A Serine/arginine-rich sp 99.6 7.9E-16 2.7E-20 122.6 9.1 122 46-252 5-126 (135)
195 2dit_A HIV TAT specific factor 99.6 1.5E-15 5E-20 117.0 10.0 81 3-84 12-103 (112)
196 1l3k_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 129.2 9.9 80 5-85 103-185 (196)
197 3nmr_A Cugbp ELAV-like family 99.6 8.1E-16 2.8E-20 127.5 8.7 77 5-81 94-175 (175)
198 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-15 3.9E-20 129.2 9.6 77 6-83 109-187 (193)
199 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.5E-20 125.4 9.4 77 4-80 87-168 (168)
200 4fxv_A ELAV-like protein 1; RN 99.6 2.5E-15 8.6E-20 113.0 9.7 78 109-250 19-96 (99)
201 2jvr_A Nucleolar protein 3; RN 99.6 2.4E-15 8.2E-20 115.2 9.4 78 108-253 27-105 (111)
202 1fxl_A Paraneoplastic encephal 99.6 2.4E-15 8.3E-20 123.5 9.1 76 5-80 87-167 (167)
203 3ex7_B RNA-binding protein 8A; 99.6 6.9E-15 2.4E-19 115.6 10.5 83 105-251 18-100 (126)
204 2fy1_A RNA-binding motif prote 99.6 2.1E-14 7.3E-19 111.2 12.9 82 107-253 5-86 (116)
205 2dnm_A SRP46 splicing factor; 99.6 2.3E-14 8E-19 108.4 11.9 87 103-253 7-93 (103)
206 3v4m_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 111.4 9.1 80 3-82 2-96 (105)
207 3pgw_A U1-A; protein-RNA compl 99.6 7.8E-15 2.7E-19 131.4 10.7 75 5-81 206-281 (282)
208 3s8s_A Histone-lysine N-methyl 99.6 5.8E-15 2E-19 113.2 8.1 80 109-252 6-85 (110)
209 3tyt_A Heterogeneous nuclear r 99.6 4.9E-15 1.7E-19 126.5 7.7 76 5-80 122-204 (205)
210 2cqi_A Nucleolysin TIAR; RNA r 99.6 8.5E-14 2.9E-18 105.3 13.6 85 104-254 10-94 (103)
211 1qm9_A Polypyrimidine tract-bi 99.6 7.2E-15 2.5E-19 124.6 8.4 76 5-82 119-196 (198)
212 4f25_A Polyadenylate-binding p 99.5 1.9E-14 6.4E-19 111.3 9.5 77 110-252 6-82 (115)
213 1x5s_A Cold-inducible RNA-bind 99.5 5.2E-14 1.8E-18 106.3 11.7 84 105-252 8-91 (102)
214 2adc_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 125.6 10.1 76 5-82 150-227 (229)
215 2cq0_A Eukaryotic translation 99.5 3.4E-14 1.2E-18 107.5 10.5 86 105-254 11-96 (103)
216 1x4a_A Splicing factor, argini 99.5 1.2E-13 4.1E-18 105.6 13.4 84 104-254 17-100 (109)
217 2dgo_A Cytotoxic granule-assoc 99.5 1.5E-13 5.1E-18 106.1 14.0 86 104-253 10-95 (115)
218 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4E-14 1.4E-18 106.9 10.5 85 106-254 9-93 (102)
219 2cq3_A RNA-binding protein 9; 99.5 1.2E-13 4E-18 104.6 13.1 84 104-253 10-93 (103)
220 2dgp_A Bruno-like 4, RNA bindi 99.5 6.7E-14 2.3E-18 106.5 11.7 86 104-253 8-96 (106)
221 2dgs_A DAZ-associated protein 99.5 8.5E-14 2.9E-18 104.5 11.8 86 104-254 5-90 (99)
222 1whw_A Hypothetical protein ri 99.5 1.1E-13 3.9E-18 103.8 11.9 84 107-254 6-89 (99)
223 2d9p_A Polyadenylate-binding p 99.5 1E-13 3.6E-18 104.8 11.7 84 104-253 10-93 (103)
224 2cqc_A Arginine/serine-rich sp 99.5 9.7E-14 3.3E-18 103.3 11.3 83 104-250 10-92 (95)
225 2dnz_A Probable RNA-binding pr 99.5 1.1E-13 3.8E-18 103.0 11.5 83 108-254 4-86 (95)
226 2cpz_A CUG triplet repeat RNA- 99.5 7.2E-14 2.5E-18 108.0 10.8 86 105-254 21-106 (115)
227 2dgx_A KIAA0430 protein; RRM d 99.5 1.2E-13 4.1E-18 103.1 11.7 81 106-253 6-90 (96)
228 1x5u_A Splicing factor 3B subu 99.5 1.7E-13 5.7E-18 104.0 12.7 86 104-253 10-95 (105)
229 2do0_A HnRNP M, heterogeneous 99.5 2.4E-13 8.1E-18 104.8 13.7 84 104-252 10-93 (114)
230 3tht_A Alkylated DNA repair pr 99.5 2.7E-14 9.3E-19 130.1 9.7 77 2-81 14-97 (345)
231 1jmt_A Splicing factor U2AF 35 99.5 4.6E-15 1.6E-19 112.5 3.9 70 11-80 20-103 (104)
232 1x4h_A RNA-binding protein 28; 99.5 1.5E-13 5.1E-18 105.4 12.4 86 104-253 10-101 (111)
233 2cph_A RNA binding motif prote 99.5 1.6E-13 5.5E-18 104.5 12.2 87 104-254 10-98 (107)
234 2dng_A Eukaryotic translation 99.5 1.2E-13 4.1E-18 104.5 11.4 85 104-254 10-94 (103)
235 2lxi_A RNA-binding protein 10; 99.5 3.2E-14 1.1E-18 105.2 7.9 79 110-252 2-82 (91)
236 1x4d_A Matrin 3; structural ge 99.5 6.9E-14 2.4E-18 105.2 9.5 76 107-252 13-91 (102)
237 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-13 4.2E-18 104.7 11.0 85 104-254 10-95 (104)
238 3bs9_A Nucleolysin TIA-1 isofo 99.5 7.9E-14 2.7E-18 102.0 9.5 79 108-250 5-83 (87)
239 2do4_A Squamous cell carcinoma 99.5 2.5E-13 8.5E-18 102.1 12.4 84 105-253 13-96 (100)
240 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.5E-13 5.1E-18 103.0 10.9 76 5-84 9-91 (100)
241 2e5h_A Zinc finger CCHC-type a 99.5 1.4E-13 4.8E-18 102.2 10.7 82 104-249 11-92 (94)
242 2div_A TRNA selenocysteine ass 99.5 1.3E-13 4.3E-18 103.5 10.6 86 107-252 7-93 (99)
243 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.1E-13 3.7E-18 100.8 9.7 79 107-249 5-83 (85)
244 2lkz_A RNA-binding protein 5; 99.5 5.1E-14 1.7E-18 104.8 7.9 80 108-251 8-93 (95)
245 3p5t_L Cleavage and polyadenyl 99.5 4.2E-14 1.4E-18 104.3 7.3 79 110-252 2-82 (90)
246 2e5j_A Methenyltetrahydrofolat 99.5 2.4E-13 8.4E-18 101.6 11.5 80 104-252 14-93 (97)
247 2dnh_A Bruno-like 5, RNA bindi 99.5 3.8E-13 1.3E-17 102.0 12.7 85 107-253 13-97 (105)
248 1sjq_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 104.2 9.5 74 108-251 15-90 (105)
249 2ywk_A Putative RNA-binding pr 99.5 1.4E-13 4.7E-18 102.5 9.9 82 104-250 11-92 (95)
250 2la6_A RNA-binding protein FUS 99.5 1.8E-13 6.3E-18 102.7 10.6 81 104-248 8-96 (99)
251 2wbr_A GW182, gawky, LD47780P; 99.5 1.8E-13 6.2E-18 98.6 10.0 72 109-250 7-78 (89)
252 1x5t_A Splicing factor 3B subu 99.5 1.2E-13 4.2E-18 103.0 9.6 81 109-253 5-86 (96)
253 2dgu_A Heterogeneous nuclear r 99.5 5.4E-13 1.8E-17 100.9 13.1 75 107-253 9-83 (103)
254 4a8x_A RNA-binding protein wit 99.5 1.6E-13 5.3E-18 100.6 9.7 81 109-252 4-84 (88)
255 1wf1_A RNA-binding protein RAL 99.5 1.3E-13 4.6E-18 105.6 9.6 74 107-252 25-99 (110)
256 2cpe_A RNA-binding protein EWS 99.5 2.4E-13 8.1E-18 104.6 11.0 85 105-253 11-103 (113)
257 3md1_A Nuclear and cytoplasmic 99.5 1.5E-13 5.1E-18 99.5 9.4 78 110-251 2-79 (83)
258 1u6f_A Tcubp1, RNA-binding pro 99.5 4.3E-13 1.5E-17 107.1 12.9 86 104-253 37-122 (139)
259 2dnp_A RNA-binding protein 14; 99.5 3.4E-13 1.1E-17 99.4 11.4 75 107-253 7-81 (90)
260 2dgv_A HnRNP M, heterogeneous 99.5 2E-13 6.8E-18 101.0 10.1 79 106-250 5-83 (92)
261 3ulh_A THO complex subunit 4; 99.5 1.8E-13 6E-18 104.3 10.1 82 103-249 23-104 (107)
262 2kxn_B Transformer-2 protein h 99.5 2E-13 7E-18 107.6 10.6 86 104-253 41-126 (129)
263 2dgt_A RNA-binding protein 30; 99.5 4.1E-13 1.4E-17 99.3 11.6 78 104-253 5-82 (92)
264 3sde_A Paraspeckle component 1 99.5 9.2E-14 3.2E-18 123.2 9.6 80 4-83 94-179 (261)
265 2dhg_A TRNA selenocysteine ass 99.5 3.2E-13 1.1E-17 102.2 11.2 81 105-250 5-87 (104)
266 1p27_B RNA-binding protein 8A; 99.5 2.5E-13 8.5E-18 103.2 10.5 81 106-250 20-100 (106)
267 2hvz_A Splicing factor, argini 99.5 3E-13 1E-17 101.9 10.9 75 110-253 1-75 (101)
268 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.6E-18 107.2 8.4 79 4-82 18-108 (118)
269 3r27_A HnRNP L, heterogeneous 99.5 2.6E-13 9E-18 101.2 10.2 74 108-251 20-95 (100)
270 2dnq_A RNA-binding protein 4B; 99.5 5E-13 1.7E-17 98.4 11.5 76 107-254 6-81 (90)
271 2dh8_A DAZ-associated protein 99.5 3.4E-13 1.2E-17 102.3 10.7 84 104-252 11-94 (105)
272 2x1f_A MRNA 3'-END-processing 99.5 2.7E-13 9.1E-18 101.2 9.9 81 109-253 2-82 (96)
273 2jrs_A RNA-binding protein 39; 99.5 2.7E-13 9.2E-18 103.5 10.0 84 104-251 21-104 (108)
274 1why_A Hypothetical protein ri 99.5 7.4E-13 2.5E-17 98.9 12.1 77 107-253 15-93 (97)
275 2cqp_A RNA-binding protein 12; 99.5 1.4E-13 4.9E-18 103.0 8.0 82 106-251 12-93 (98)
276 1x4g_A Nucleolysin TIAR; struc 99.5 5.8E-13 2E-17 101.8 11.5 78 107-254 23-100 (109)
277 2cpf_A RNA binding motif prote 99.5 3.6E-13 1.2E-17 100.8 10.0 84 109-253 5-88 (98)
278 1wex_A Hypothetical protein (r 99.5 9.5E-13 3.2E-17 99.6 12.3 76 107-252 13-90 (104)
279 1oo0_B CG8781-PA, drosophila Y 99.5 3.8E-13 1.3E-17 102.9 10.2 83 105-251 22-104 (110)
280 2cpj_A Non-POU domain-containi 99.5 6E-13 2E-17 99.9 11.0 78 106-253 12-89 (99)
281 3s6e_A RNA-binding protein 39; 99.5 2.8E-13 9.5E-18 104.1 9.2 78 3-81 4-91 (114)
282 2ytc_A PRE-mRNA-splicing facto 99.4 5E-13 1.7E-17 97.2 10.0 70 104-239 7-77 (85)
283 2err_A Ataxin-2-binding protei 99.4 3.5E-13 1.2E-17 103.1 9.5 81 105-251 25-105 (109)
284 2e44_A Insulin-like growth fac 99.4 7.7E-13 2.6E-17 98.6 11.1 80 104-251 10-90 (96)
285 2cq1_A PTB-like protein L; RRM 99.4 9.3E-13 3.2E-17 99.0 11.5 78 105-252 11-90 (101)
286 3ns6_A Eukaryotic translation 99.4 1.2E-13 4.1E-18 104.0 6.6 72 109-240 6-84 (100)
287 3ucg_A Polyadenylate-binding p 99.4 5.3E-13 1.8E-17 98.0 9.9 79 109-252 6-84 (89)
288 1p1t_A Cleavage stimulation fa 99.4 2.5E-13 8.5E-18 102.8 8.1 83 107-253 6-88 (104)
289 1h2v_Z 20 kDa nuclear CAP bind 99.4 6.8E-13 2.3E-17 108.2 11.2 82 107-252 37-118 (156)
290 2cqd_A RNA-binding region cont 99.4 1.2E-12 4E-17 101.2 11.9 83 104-251 12-94 (116)
291 2ad9_A Polypyrimidine tract-bi 99.4 7.3E-13 2.5E-17 102.3 10.5 76 107-252 29-106 (119)
292 3n9u_C Cleavage and polyadenyl 99.4 4.3E-13 1.5E-17 109.3 9.7 79 108-250 54-134 (156)
293 2m2b_A RNA-binding protein 10; 99.4 4.1E-13 1.4E-17 106.2 9.3 82 106-252 20-107 (131)
294 1x4e_A RNA binding motif, sing 99.4 1.1E-13 3.6E-18 100.9 5.3 73 108-240 4-76 (85)
295 2hgn_A Heterogeneous nuclear r 99.4 8.9E-14 3E-18 110.8 5.2 119 46-250 2-120 (139)
296 1wez_A HnRNP H', FTP-3, hetero 99.4 6.8E-13 2.3E-17 100.1 9.8 80 104-250 10-89 (102)
297 3s7r_A Heterogeneous nuclear r 99.4 7.3E-13 2.5E-17 96.8 9.7 79 105-248 7-85 (87)
298 2cpi_A CCR4-NOT transcription 99.4 6.2E-13 2.1E-17 102.0 9.7 87 106-253 12-101 (111)
299 2fc9_A NCL protein; structure 99.4 6E-13 2.1E-17 100.2 9.3 81 105-253 11-91 (101)
300 1whx_A Hypothetical protein ri 99.4 3.9E-13 1.3E-17 103.1 8.3 74 107-250 8-81 (111)
301 1s79_A Lupus LA protein; RRM, 99.4 6.1E-13 2.1E-17 100.5 9.2 72 107-240 9-80 (103)
302 2khc_A Testis-specific RNP-typ 99.4 8.6E-13 2.9E-17 102.3 10.3 76 104-239 35-110 (118)
303 2cpd_A Apobec-1 stimulating pr 99.4 2.5E-12 8.6E-17 96.4 12.5 77 105-253 11-89 (99)
304 2cq4_A RNA binding motif prote 99.4 4.1E-13 1.4E-17 103.5 8.2 81 107-252 23-103 (114)
305 2cqg_A TDP-43, TAR DNA-binding 99.4 2.7E-12 9.4E-17 96.9 12.7 84 104-253 10-93 (103)
306 2jwn_A Embryonic polyadenylate 99.4 6.3E-13 2.1E-17 104.0 9.4 80 108-252 35-114 (124)
307 2dgw_A Probable RNA-binding pr 99.4 1.2E-12 3.9E-17 96.6 10.2 82 104-252 5-86 (91)
308 2nlw_A Eukaryotic translation 99.4 1.3E-12 4.6E-17 99.1 10.8 80 107-251 13-98 (105)
309 2krb_A Eukaryotic translation 99.4 3.8E-13 1.3E-17 97.0 7.4 68 110-239 2-75 (81)
310 2a3j_A U1 small nuclear ribonu 99.4 1.5E-12 5E-17 102.2 11.2 79 107-252 27-109 (127)
311 2kt5_A RNA and export factor-b 99.4 3.4E-12 1.2E-16 99.8 13.2 85 103-252 29-113 (124)
312 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.4E-12 4.8E-17 104.1 11.1 82 103-248 57-138 (140)
313 2cpx_A Hypothetical protein FL 99.4 1.3E-12 4.5E-17 100.7 10.6 80 107-254 23-106 (115)
314 2jvo_A Nucleolar protein 3; nu 99.4 8E-13 2.7E-17 100.9 9.1 77 105-253 27-103 (108)
315 1wg5_A Heterogeneous nuclear r 99.4 1E-12 3.6E-17 99.5 9.7 81 104-250 10-91 (104)
316 3lqv_A PRE-mRNA branch site pr 99.4 1.4E-12 4.8E-17 100.6 10.6 78 107-251 6-83 (115)
317 2ek1_A RNA-binding protein 12; 99.4 2E-13 7E-18 101.5 5.5 79 108-250 14-92 (95)
318 2cqh_A IGF-II mRNA-binding pro 99.4 9.8E-13 3.4E-17 97.4 9.1 75 108-253 7-83 (93)
319 1x4b_A Heterogeneous nuclear r 99.4 1.5E-12 5.2E-17 100.6 10.4 83 107-254 25-107 (116)
320 2mss_A Protein (musashi1); RNA 99.4 5E-13 1.7E-17 94.8 7.0 69 111-240 1-69 (75)
321 1sjr_A Polypyrimidine tract-bi 99.4 2.3E-12 7.9E-17 104.6 11.4 80 107-252 44-123 (164)
322 2dnn_A RNA-binding protein 12; 99.4 9.6E-13 3.3E-17 100.4 8.6 79 105-250 12-90 (109)
323 2kvi_A Nuclear polyadenylated 99.4 9.3E-13 3.2E-17 98.2 8.4 72 107-250 8-80 (96)
324 2hgl_A HNRPF protein, heteroge 99.4 7.6E-13 2.6E-17 105.0 8.1 81 104-250 39-122 (136)
325 2xnq_A Nuclear polyadenylated 99.4 2.4E-12 8.3E-17 96.2 10.3 75 105-251 18-93 (97)
326 2rs2_A Musashi-1, RNA-binding 99.4 1.8E-12 6.2E-17 99.0 9.7 82 107-253 23-104 (109)
327 1wel_A RNA-binding protein 12; 99.4 7.5E-13 2.6E-17 103.7 7.5 82 104-250 20-101 (124)
328 2db1_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 101.7 8.4 81 104-250 12-95 (118)
329 1x5o_A RNA binding motif, sing 99.4 5.4E-12 1.9E-16 97.1 12.2 85 106-251 22-110 (114)
330 1x4f_A Matrin 3; structural ge 99.4 7.7E-13 2.6E-17 101.0 7.1 75 106-250 22-99 (112)
331 2la4_A Nuclear and cytoplasmic 99.4 1.4E-12 4.8E-17 98.1 8.5 66 108-239 26-91 (101)
332 1x5p_A Negative elongation fac 99.4 7.7E-12 2.6E-16 93.3 12.3 77 106-254 12-88 (97)
333 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-12 4E-17 93.3 7.4 70 110-240 1-70 (77)
334 1nu4_A U1A RNA binding domain; 99.4 1.3E-12 4.5E-17 97.5 7.8 80 106-252 5-88 (97)
335 2cq2_A Hypothetical protein LO 99.4 2.7E-12 9.2E-17 98.1 9.6 64 107-236 23-88 (114)
336 2cpy_A RNA-binding protein 12; 99.4 1.7E-12 5.8E-17 100.0 8.6 80 106-251 12-92 (114)
337 2dis_A Unnamed protein product 99.4 4.7E-12 1.6E-16 96.6 10.5 81 108-252 7-91 (109)
338 2fc8_A NCL protein; structure 99.4 4.5E-12 1.6E-16 95.5 10.3 84 104-254 10-93 (102)
339 3q2s_C Cleavage and polyadenyl 99.4 1.7E-12 5.7E-17 112.6 8.8 79 108-250 67-147 (229)
340 2e5i_A Heterogeneous nuclear r 99.3 9.3E-12 3.2E-16 96.8 11.8 77 108-252 24-101 (124)
341 2ki2_A SS-DNA binding protein 99.3 7.5E-13 2.6E-17 97.4 5.4 70 110-240 2-71 (90)
342 2j76_E EIF-4B, EIF4B, eukaryot 99.3 9.5E-13 3.2E-17 99.0 5.6 75 104-240 14-89 (100)
343 1fjc_A Nucleolin RBD2, protein 99.3 2.8E-12 9.5E-17 95.5 8.2 79 105-252 12-90 (96)
344 1fj7_A Nucleolin RBD1, protein 99.3 1.6E-12 5.5E-17 97.8 6.7 80 107-252 15-94 (101)
345 2e5g_A U6 snRNA-specific termi 99.3 6.7E-12 2.3E-16 93.1 9.9 65 109-239 8-72 (94)
346 3zzy_A Polypyrimidine tract-bi 99.3 7.2E-12 2.5E-16 98.0 9.8 79 107-252 26-105 (130)
347 2f3j_A RNA and export factor b 99.3 9.7E-12 3.3E-16 103.4 11.3 75 105-240 84-158 (177)
348 2lmi_A GRSF-1, G-rich sequence 99.3 1.7E-12 5.8E-17 98.9 6.1 75 104-240 6-83 (107)
349 2hzc_A Splicing factor U2AF 65 99.3 6.3E-12 2.2E-16 91.7 9.0 65 108-239 5-80 (87)
350 1wg1_A KIAA1579 protein, homol 99.3 3.7E-12 1.3E-16 93.3 7.3 72 109-251 5-76 (88)
351 2diu_A KIAA0430 protein; struc 99.3 1.3E-11 4.3E-16 89.9 9.3 71 110-254 10-85 (96)
352 1iqt_A AUF1, heterogeneous nuc 99.3 3.5E-12 1.2E-16 90.3 6.3 69 111-240 1-69 (75)
353 2dha_A FLJ20171 protein; RRM d 99.3 3.5E-12 1.2E-16 99.4 6.6 77 107-249 21-101 (123)
354 2j8a_A Histone-lysine N-methyl 99.3 7.4E-12 2.5E-16 96.4 8.1 80 110-253 3-96 (136)
355 3egn_A RNA-binding protein 40; 99.3 8.9E-12 3.1E-16 99.9 8.6 80 107-253 43-130 (143)
356 2hgm_A HNRPF protein, heteroge 99.3 6.2E-12 2.1E-16 98.2 7.3 74 104-240 37-112 (126)
357 3d2w_A TAR DNA-binding protein 99.3 1.6E-11 5.3E-16 90.2 8.4 40 105-144 7-46 (89)
358 2xs2_A Deleted in azoospermia- 99.3 9.2E-12 3.2E-16 93.8 7.3 71 106-239 6-76 (102)
359 2lcw_A RNA-binding protein FUS 98.9 5.4E-13 1.9E-17 103.2 0.0 82 108-253 6-95 (116)
360 2bz2_A Negative elongation fac 99.2 2.3E-11 8E-16 94.6 9.0 75 107-253 37-111 (121)
361 2dnl_A Cytoplasmic polyadenyla 99.2 9.6E-12 3.3E-16 95.8 6.6 67 107-231 6-72 (114)
362 2dnr_A Synaptojanin-1; RRM dom 99.2 2.5E-11 8.5E-16 87.5 8.0 73 5-83 6-86 (91)
363 1owx_A Lupus LA protein, SS-B, 99.2 3.6E-11 1.2E-15 92.5 9.3 75 4-81 16-94 (121)
364 2voo_A Lupus LA protein; RNA-b 99.2 6.9E-11 2.4E-15 99.7 11.5 119 54-249 63-183 (193)
365 1wf0_A TDP-43, TAR DNA-binding 99.2 1.6E-11 5.5E-16 89.8 6.7 36 109-144 5-40 (88)
366 2dit_A HIV TAT specific factor 99.2 3.7E-10 1.3E-14 86.5 11.4 79 107-253 13-102 (112)
367 2pe8_A Splicing factor 45; RRM 99.1 2.3E-10 7.8E-15 86.5 10.0 80 108-250 7-91 (105)
368 3u1l_A PRE-mRNA-splicing facto 99.1 1.2E-10 4.3E-15 100.6 8.0 65 106-236 131-204 (240)
369 1ufw_A Synaptojanin 2; RNP dom 99.0 3E-10 1E-14 82.3 5.9 71 5-81 14-93 (95)
370 3v4m_A Splicing factor U2AF 65 99.0 9E-10 3.1E-14 83.3 8.4 80 109-250 5-94 (105)
371 3tht_A Alkylated DNA repair pr 99.0 8.2E-10 2.8E-14 100.6 7.4 66 106-237 15-82 (345)
372 3s6e_A RNA-binding protein 39; 98.9 3.6E-09 1.2E-13 81.0 9.1 75 108-250 6-90 (114)
373 1owx_A Lupus LA protein, SS-B, 98.9 2.4E-09 8.1E-14 82.3 7.9 70 104-239 13-86 (121)
374 3ue2_A Poly(U)-binding-splicin 98.9 3.6E-09 1.2E-13 81.5 8.3 82 109-250 20-106 (118)
375 3dxb_A Thioredoxin N-terminall 98.9 2.8E-09 9.5E-14 91.8 7.3 76 6-81 124-211 (222)
376 1jmt_A Splicing factor U2AF 35 98.9 6.5E-10 2.2E-14 83.9 2.9 66 114-240 20-97 (104)
377 2d9o_A DNAJ (HSP40) homolog, s 98.8 6.4E-08 2.2E-12 72.1 11.9 63 119-252 27-89 (100)
378 2l9w_A U4/U6 snRNA-associated- 98.6 1.5E-07 5.1E-12 69.5 8.9 73 5-80 20-97 (117)
379 2dhx_A Poly (ADP-ribose) polym 98.6 1E-06 3.4E-11 64.6 11.5 89 4-122 6-99 (104)
380 2dnr_A Synaptojanin-1; RRM dom 98.5 3.5E-07 1.2E-11 65.8 7.3 70 109-251 7-84 (91)
381 1ufw_A Synaptojanin 2; RNP dom 98.4 1.1E-06 3.7E-11 63.6 8.5 70 108-250 14-92 (95)
382 3dxb_A Thioredoxin N-terminall 98.1 7.3E-06 2.5E-10 70.2 7.2 70 121-250 141-210 (222)
383 1wey_A Calcipressin 1; structu 98.0 1.5E-05 5.3E-10 58.6 7.4 77 4-83 3-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 97.9 8.9E-05 3E-09 54.7 9.6 66 108-239 20-90 (117)
385 1uw4_A UPF3X; nonsense mediate 97.9 6E-05 2E-09 54.5 7.7 66 7-72 2-72 (91)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00019 6.5E-09 54.3 8.8 72 5-81 23-95 (119)
387 1whv_A Poly(A)-specific ribonu 97.6 0.00012 4.2E-09 52.8 6.5 54 7-66 17-70 (100)
388 3ctr_A Poly(A)-specific ribonu 97.5 0.00014 4.9E-09 52.7 5.4 53 8-66 8-60 (101)
389 3p3d_A Nucleoporin 53; structu 97.1 0.0011 3.7E-08 50.8 6.2 76 4-81 5-97 (132)
390 2l08_A Regulator of nonsense t 97.0 0.00089 3.1E-08 48.6 5.0 68 5-72 8-80 (97)
391 1wey_A Calcipressin 1; structu 97.0 0.0012 4E-08 48.5 5.6 69 110-244 6-79 (104)
392 2dhx_A Poly (ADP-ribose) polym 96.7 0.0073 2.5E-07 44.2 7.4 35 109-143 8-47 (104)
393 3pq1_A Poly(A) RNA polymerase; 96.3 0.002 6.8E-08 60.6 3.4 57 5-64 52-108 (464)
394 1whv_A Poly(A)-specific ribonu 96.2 0.02 6.7E-07 41.4 7.5 27 111-137 17-43 (100)
395 1uw4_A UPF3X; nonsense mediate 96.2 0.035 1.2E-06 39.9 8.5 73 110-240 2-74 (91)
396 1wwh_A Nucleoporin 35, nucleop 96.1 0.015 5.3E-07 43.8 6.7 72 107-249 22-93 (119)
397 3ctr_A Poly(A)-specific ribonu 95.7 0.021 7.3E-07 41.3 5.5 25 111-135 7-31 (101)
398 3pq1_A Poly(A) RNA polymerase; 93.5 0.057 2E-06 50.7 4.4 36 110-146 54-89 (464)
399 2l08_A Regulator of nonsense t 93.0 0.18 6.1E-06 36.5 5.3 28 213-240 55-82 (97)
400 3d45_A Poly(A)-specific ribonu 92.2 0.26 8.8E-06 47.1 7.0 54 7-66 441-494 (507)
401 3p3d_A Nucleoporin 53; structu 88.9 0.62 2.1E-05 35.6 5.0 35 211-250 62-96 (132)
402 4eyt_A Telomerase associated p 87.5 3.8 0.00013 28.7 7.8 57 4-65 10-66 (129)
403 2g0c_A ATP-dependent RNA helic 84.9 2.7 9.3E-05 28.4 6.2 68 8-81 2-75 (76)
404 3d45_A Poly(A)-specific ribonu 69.8 12 0.00041 35.6 7.7 26 110-136 441-466 (507)
405 4e8u_A Putative uncharacterize 59.7 12 0.0004 29.9 4.6 50 7-56 13-73 (172)
406 3lpe_A Putative transcription 57.3 35 0.0012 23.9 6.5 34 32-67 39-72 (92)
407 3j21_T 50S ribosomal protein L 55.6 41 0.0014 23.4 6.4 55 9-63 25-81 (86)
408 3ts2_A Protein LIN-28 homolog 44.9 4.1 0.00014 31.8 -0.3 28 21-53 2-29 (148)
409 1vq8_S 50S ribosomal protein L 42.4 56 0.0019 22.6 5.3 54 9-62 24-79 (85)
410 2e5p_A Protein PHF1, PHD finge 38.7 17 0.00057 23.9 1.9 20 31-55 28-47 (68)
411 3fut_A Dimethyladenosine trans 35.2 28 0.00097 29.9 3.6 32 6-38 110-141 (271)
412 2m0o_A PHD finger protein 1; t 33.8 20 0.0007 24.2 1.8 20 31-55 45-64 (79)
413 2eqj_A Metal-response element- 33.4 22 0.00077 23.3 1.9 12 44-55 40-51 (66)
414 3uzu_A Ribosomal RNA small sub 32.3 17 0.00059 31.4 1.7 34 6-39 114-147 (279)
415 3u5e_X 60S ribosomal protein L 30.4 1E+02 0.0036 23.5 5.5 55 9-63 81-137 (142)
416 4bby_A Alkyldihydroxyacetoneph 29.7 42 0.0014 32.9 4.1 54 13-66 350-409 (658)
417 4a17_R RPL23A, 60S ribosomal p 28.8 1.1E+02 0.0039 23.5 5.5 55 9-63 89-145 (150)
418 2e5q_A PHD finger protein 19; 28.4 12 0.0004 24.2 -0.1 12 44-55 34-45 (63)
419 3iz5_X 60S ribosomal protein L 27.8 95 0.0032 24.1 5.0 55 9-63 91-147 (152)
420 2zkr_s 60S ribosomal protein L 27.7 1.3E+02 0.0044 23.4 5.7 55 9-63 95-151 (156)
421 4e8u_A Putative uncharacterize 27.3 1.4E+02 0.0048 23.6 6.0 57 110-166 13-80 (172)
422 3swz_A Steroid 17-alpha-hydrox 25.9 59 0.002 29.9 4.3 59 9-74 17-79 (494)
423 3h7h_B Transcription elongatio 25.8 72 0.0025 23.1 3.8 35 32-68 40-74 (106)
424 1nz8_A Transcription antitermi 25.6 1.9E+02 0.0066 20.9 7.6 24 44-67 61-89 (119)
425 1qyr_A KSGA, high level kasuga 25.1 43 0.0015 28.3 2.9 32 7-38 91-122 (252)
426 3tbg_A Cytochrome P450 2D6; mo 25.0 40 0.0014 30.7 3.0 55 10-71 20-77 (479)
427 1i4w_A Mitochondrial replicati 24.2 36 0.0012 30.5 2.3 22 8-29 144-165 (353)
428 3tqs_A Ribosomal RNA small sub 24.2 21 0.00071 30.4 0.7 32 8-39 98-129 (255)
429 4hcz_A PHD finger protein 1; p 23.5 44 0.0015 21.2 1.9 20 31-55 22-41 (58)
430 3p8b_B Transcription antitermi 21.8 1.6E+02 0.0054 22.5 5.4 34 33-68 33-66 (152)
431 1wvf_A 4-cresol dehydrogenase 21.4 66 0.0022 30.4 3.7 42 22-63 217-262 (520)
432 3ftd_A Dimethyladenosine trans 21.1 43 0.0015 28.2 2.1 30 7-36 96-125 (249)
433 2od0_A Hypothetical protein VP 21.1 76 0.0026 22.6 3.2 27 18-49 4-30 (105)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-33 Score=242.55 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=143.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+.+.++|||+|||+++|+++|+++|++||+|.+|+|+. ++.++|||||+|.+.++|++||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35789999999999999999999999999999999965 578899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccc
Q 019418 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGE 159 (341)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~ 159 (341)
+..... .......+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 92 ~~~~~~------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~------------- 140 (213)
T 4f02_A 92 SQRDPS------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN------------- 140 (213)
T ss_dssp CCCCTH------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------
T ss_pred cccccc------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------------
Confidence 865431 1122336899999999999999999999999999999988754
Q ss_pred cchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 160 VNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 160 ~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
..+++|||+|.+.++|.+||+.|||..++|
T Consensus 141 -------------------------------------------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g- 170 (213)
T 4f02_A 141 -------------------------------------------------GSKGYGFVHFETQEAAERAIEKMNGMLLND- 170 (213)
T ss_dssp -------------------------------------------------EEEEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred -------------------------------------------------CCceEEEEEeCCHHHHHHHHHHhCCCEECC-
Confidence 125799999999999999999999999999
Q ss_pred cccceEEEeeccC
Q 019418 240 FSRSYVRVREYDS 252 (341)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (341)
..|.|.....
T Consensus 171 ---~~i~V~~a~~ 180 (213)
T 4f02_A 171 ---RKVFVGRFKS 180 (213)
T ss_dssp ---EECEEEECCC
T ss_pred ---EEEEEEEcCC
Confidence 5677765543
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-32 Score=223.23 Aligned_cols=162 Identities=23% Similarity=0.367 Sum_probs=141.6
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~ 84 (341)
++|||+|||+++|+++|.++|++||+|.+|.|.. ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999965 46788999999999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhh
Q 019418 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGE 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (341)
. .......+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 81 ~------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~------------------ 124 (166)
T 3md3_A 81 Q------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ------------------ 124 (166)
T ss_dssp C------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT------------------
T ss_pred C------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC------------------
Confidence 2 2233457999999999999999999999999999999998754
Q ss_pred hHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccce
Q 019418 165 IREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 244 (341)
Q Consensus 165 ~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 244 (341)
+|.+ +++|||+|.+.++|.+|+..|||..++| ..
T Consensus 125 ---~~~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 158 (166)
T 3md3_A 125 ---TGSS---------------------------------------RGYGFVSFTSQDDAQNAMDSMQGQDLNG----RP 158 (166)
T ss_dssp ---TCCE---------------------------------------EEEEEEEESCHHHHHHHHHHHTTCEETT----EE
T ss_pred ---CCCc---------------------------------------ceEEEEEeCCHHHHHHHHHHhCCCccCC----cE
Confidence 2222 5699999999999999999999999999 45
Q ss_pred EEEeec
Q 019418 245 VRVREY 250 (341)
Q Consensus 245 ~~~~~~ 250 (341)
+.+...
T Consensus 159 i~v~~a 164 (166)
T 3md3_A 159 LRINWA 164 (166)
T ss_dssp CEEEES
T ss_pred EEEEec
Confidence 655543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-31 Score=221.94 Aligned_cols=156 Identities=24% Similarity=0.368 Sum_probs=139.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
++++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.++++|++|++.|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999965 67788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
+... .....+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--------------- 125 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV--------------- 125 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC---------------
Confidence 5431 22346899999999999999999999999999999988764
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|.+ +++|||+|.+.++|.+|++.|||..+.|+.
T Consensus 126 ------~g~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 126 ------TGVS---------------------------------------RGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp ------TCCE---------------------------------------EEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ------CCCc---------------------------------------cceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 1222 469999999999999999999999999965
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-31 Score=222.13 Aligned_cols=156 Identities=28% Similarity=0.388 Sum_probs=139.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
++++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.++++|++|++.|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999964 67789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
+... .....+|+|+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~--------------- 126 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--------------- 126 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT---------------
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC---------------
Confidence 5432 22347999999999999999999999999999999988764
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.|.. +++|||+|.+.++|.+|+..|||..+.|..
T Consensus 127 ------~~~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 160 (168)
T 1b7f_A 127 ------TGRP---------------------------------------RGVAFVRYNKREEAQEAISALNNVIPEGGS 160 (168)
T ss_dssp ------TCCE---------------------------------------EEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ------CCCc---------------------------------------ceEEEEEECCHHHHHHHHHHhcCCEecCCC
Confidence 1222 469999999999999999999999998844
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=2.8e-31 Score=227.74 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=141.3
Q ss_pred CCCEEEeCCCC-CCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp-~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++++|||+||| ..+|+++|+++|++||+|.+|+|+.+ .+|||||+|.++++|+.||+.|||..|.|+.|.|.+++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 67999999999 89999999999999999999999754 4799999999999999999999999999999999998754
Q ss_pred CCCCCCC-CCC------CCCCCCC--CC--------CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCe--eEEEEeeC
Q 019418 84 RRHSSSM-DRY------SSYSSGG--SR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFRD 144 (341)
Q Consensus 84 ~~~~~~~-~~~------~~~~~~~--~~--------~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i--~~~~i~~~ 144 (341)
...+... ... ..+.... .. .....+..+|||+|||.++++++|+++|.+||.| ..+.+..+
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 3211100 000 0010000 00 0012345689999999999999999999999998 88888765
Q ss_pred CchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhH
Q 019418 145 RGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDM 224 (341)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a 224 (341)
.. ..+++|||+|.+.++|
T Consensus 161 ~~--------------------------------------------------------------~~~g~gfV~f~~~~~A 178 (205)
T 3tyt_A 161 KS--------------------------------------------------------------ERSSSGLLEWDSKSDA 178 (205)
T ss_dssp CS--------------------------------------------------------------SSSEEEEEECSSHHHH
T ss_pred CC--------------------------------------------------------------CCceEEEEEeCCHHHH
Confidence 32 1147999999999999
Q ss_pred HHHHHhcCccccccccccceEEE
Q 019418 225 KYAIRKLDRSEFRNAFSRSYVRV 247 (341)
Q Consensus 225 ~~Ai~~l~g~~~~g~~~~~~~~~ 247 (341)
.+||..|||..+.|.....++.+
T Consensus 179 ~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 179 LETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp HHHHHHHTTCEECCSSSSSCEEC
T ss_pred HHHHHHhCCCCccCCCCCcceEE
Confidence 99999999999999765555443
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.7e-31 Score=224.59 Aligned_cols=170 Identities=17% Similarity=0.307 Sum_probs=139.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.++++|++||+. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 577899999999999999999985 999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
........ +.......+|||+|||.++++++|+++|.+||.|..+.+..+..
T Consensus 90 ~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------- 141 (196)
T 1l3k_A 90 VSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG-------------- 141 (196)
T ss_dssp CC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT--------------
T ss_pred cCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC--------------
Confidence 75432211 11223447999999999999999999999999999999998764
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|.+ +++|||+|.+.++|.+|+.. ++..++|
T Consensus 142 -------~g~~---------------------------------------~g~afV~F~~~~~A~~A~~~-~~~~~~G-- 172 (196)
T 1l3k_A 142 -------SGKK---------------------------------------RGFAFVTFDDHDSVDKIVIQ-KYHTVNG-- 172 (196)
T ss_dssp -------TCCE---------------------------------------EEEEEEEESSHHHHHHHHHC-SCCEETT--
T ss_pred -------CCCc---------------------------------------cceEEEEECCHHHHHHHHHh-CCcEECC--
Confidence 2222 56999999999999999987 7999999
Q ss_pred ccceEEEeeccCC
Q 019418 241 SRSYVRVREYDSR 253 (341)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (341)
..+.+.....+
T Consensus 173 --~~i~v~~a~~k 183 (196)
T 1l3k_A 173 --HNCEVRKALSK 183 (196)
T ss_dssp --EECEEEECC--
T ss_pred --EEEEEEecCCh
Confidence 45666655443
No 7
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=7.3e-30 Score=217.57 Aligned_cols=181 Identities=22% Similarity=0.368 Sum_probs=143.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhcc----C-------CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
..+++|||+|||+++|+++|.++|++| | .|.++.+. .++|||||+|.++++|++|| .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 5 67777664 55899999999999999999 799999999
Q ss_pred eEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhh
Q 019418 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRM 152 (341)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~ 152 (341)
+.|.|.++..................+...........+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~------ 151 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA------ 151 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT------
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC------
Confidence 99999998765433221111111111111223335668999999999999999999999999999999998864
Q ss_pred hhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcC
Q 019418 153 LRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLD 232 (341)
Q Consensus 153 ~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~ 232 (341)
+|.+ +++|||+|.+.++|.+|++.||
T Consensus 152 ---------------~~~~---------------------------------------~g~afV~f~~~~~a~~A~~~l~ 177 (198)
T 2yh0_A 152 ---------------TGLS---------------------------------------KGYAFCEYVDINVTDQAIAGLN 177 (198)
T ss_dssp ---------------TCSE---------------------------------------EEEEEEEESSSSHHHHHHHHHT
T ss_pred ---------------CCCc---------------------------------------ceEEEEEECCHHHHHHHHHHcC
Confidence 2222 4699999999999999999999
Q ss_pred ccccccccccceEEEeeccC
Q 019418 233 RSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 233 g~~~~g~~~~~~~~~~~~~~ 252 (341)
|..++| ..+.+.....
T Consensus 178 g~~~~g----~~l~v~~a~~ 193 (198)
T 2yh0_A 178 GMQLGD----KKLLVQRASV 193 (198)
T ss_dssp TCEETT----EECEEEESCC
T ss_pred CCEECC----EEEEEEECCC
Confidence 999999 5666665543
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.1e-30 Score=222.93 Aligned_cols=176 Identities=20% Similarity=0.313 Sum_probs=143.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.++++|++|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999999965 57889999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
.......... ..........+|||+|||.++++++|+++|.+||.|..+.+..+..
T Consensus 107 ~~~~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--------------- 162 (216)
T 2qfj_A 107 NIGQAQPIID---------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT--------------- 162 (216)
T ss_dssp CCGGGHHHHH---------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT---------------
T ss_pred Cccccchhhh---------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC---------------
Confidence 4321100000 0001123447999999999999999999999999999999998854
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 241 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~ 241 (341)
+|.+ +++|||+|.+.++|.+|+..|||..++|
T Consensus 163 ------~g~~---------------------------------------~g~afV~F~~~~~A~~A~~~l~g~~~~g--- 194 (216)
T 2qfj_A 163 ------TGKH---------------------------------------KGYGFIEYEKAQSSQDAVSSMNLFDLGG--- 194 (216)
T ss_dssp ------TCCE---------------------------------------EEEEEEEESSHHHHHHHHHHHTTCBCSS---
T ss_pred ------CCCc---------------------------------------CceEEEEecCHHHHHHHHHHccCCEeCC---
Confidence 2222 4699999999999999999999999999
Q ss_pred cceEEEeeccCC
Q 019418 242 RSYVRVREYDSR 253 (341)
Q Consensus 242 ~~~~~~~~~~~~ 253 (341)
..|.|......
T Consensus 195 -~~i~V~~a~~~ 205 (216)
T 2qfj_A 195 -QYLRVGKAVTP 205 (216)
T ss_dssp -SBCEEEECSSC
T ss_pred -cEEEEEEecCC
Confidence 56777665443
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.7e-30 Score=216.99 Aligned_cols=154 Identities=15% Similarity=0.293 Sum_probs=134.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CC--CCCcEEEEEEcCHHHHHHHHHhcCCceeC---CeEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~--~~~g~afV~F~~~e~A~~Ai~~lng~~i~---g~~l~ 76 (341)
++++|||+|||+++|+++|.++|++||+|.+|.|+. ++ .++|||||+|.++++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 578999999999999999999999999999999965 22 67899999999999999999999998876 68888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhc
Q 019418 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFW 156 (341)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~ 156 (341)
+.++..... ......+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 82 ~~~~~~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~---------- 132 (175)
T 3nmr_A 82 MKPADSEKN-------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD---------- 132 (175)
T ss_dssp EEECGGGCC-------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----------
T ss_pred Ecccccccc-------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----------
Confidence 888765432 223457899999999999999999999999999999988754
Q ss_pred ccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccc
Q 019418 157 GGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEF 236 (341)
Q Consensus 157 ~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~ 236 (341)
|.+ +++|||+|.+.++|.+|++.|||..+
T Consensus 133 ------------g~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 133 ------------GLS---------------------------------------RGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp ------------SCE---------------------------------------EEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred ------------CCE---------------------------------------EEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 222 56999999999999999999999877
Q ss_pred cc
Q 019418 237 RN 238 (341)
Q Consensus 237 ~g 238 (341)
.+
T Consensus 162 ~~ 163 (175)
T 3nmr_A 162 ME 163 (175)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.2e-29 Score=228.44 Aligned_cols=178 Identities=19% Similarity=0.287 Sum_probs=143.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHH----HHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
..++++|||+|||+++|+++|+ ++|++||+|.+|.|..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 5789999999999999999966 999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCC-----C-------------------------------------------------------------
Q 019418 79 LAHGGRRHSSSMD-----R------------------------------------------------------------- 92 (341)
Q Consensus 79 ~~~~~~~~~~~~~-----~------------------------------------------------------------- 92 (341)
++........... .
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 9865432000000 0
Q ss_pred ------CCCCCCC----------C---------CCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCch
Q 019418 93 ------YSSYSSG----------G---------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGE 147 (341)
Q Consensus 93 ------~~~~~~~----------~---------~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~ 147 (341)
....... . ..........+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~- 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH- 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC-
Confidence 0000000 0 0001122457899999999999999999999999999999986543
Q ss_pred hhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHH
Q 019418 148 LHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYA 227 (341)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~A 227 (341)
++|||+|.+.++|.+|
T Consensus 245 ----------------------------------------------------------------g~afV~f~~~~~A~~A 260 (282)
T 3pgw_A 245 ----------------------------------------------------------------DIAFVEFDNEVQAGAA 260 (282)
T ss_pred ----------------------------------------------------------------cEEEEEeCCHHHHHHH
Confidence 6999999999999999
Q ss_pred HHhcCccccc-cccccceEEEee
Q 019418 228 IRKLDRSEFR-NAFSRSYVRVRE 249 (341)
Q Consensus 228 i~~l~g~~~~-g~~~~~~~~~~~ 249 (341)
+..|||..+. | ..|.+..
T Consensus 261 ~~~l~g~~~~~g----~~l~v~~ 279 (282)
T 3pgw_A 261 RDALQGFKITQN----NAMKISF 279 (282)
T ss_pred HHHcCCcEeCCC----CEEEEEE
Confidence 9999999999 7 4565544
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=9.5e-31 Score=216.99 Aligned_cols=161 Identities=19% Similarity=0.382 Sum_probs=139.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+++++|||+|||+++|+++|.++|++||+|.+|.|+. ++.++|||||+|.++++|++|++ ++..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 4689999999999999999999999999999999965 57889999999999999999998 467899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
.+.. ......+|||+|||.++++++|+++|.+||.|..+.+..+..
T Consensus 79 ~~~~--------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~-------------- 124 (167)
T 2cjk_A 79 IPRD--------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD-------------- 124 (167)
T ss_dssp CCHH--------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS--------------
T ss_pred cchh--------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC--------------
Confidence 6432 122346899999999999999999999999999999988754
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|.+ +|+|||+|.+.++|.+|++ +++..+.|
T Consensus 125 -------~g~~---------------------------------------~g~afV~f~~~~~a~~A~~-~~~~~~~g-- 155 (167)
T 2cjk_A 125 -------TGQS---------------------------------------RGFGFVTYDSADAVDRVCQ-NKFIDFKD-- 155 (167)
T ss_dssp -------SSTT---------------------------------------SEEEEEEESSHHHHHHHHH-CSEECSSS--
T ss_pred -------CCcc---------------------------------------ceEEEEEECCHHHHHHHHh-CCCEEeCC--
Confidence 2222 5799999999999999998 89999999
Q ss_pred ccceEEEeecc
Q 019418 241 SRSYVRVREYD 251 (341)
Q Consensus 241 ~~~~~~~~~~~ 251 (341)
..+.+....
T Consensus 156 --~~i~V~~a~ 164 (167)
T 2cjk_A 156 --RKIEIKRAE 164 (167)
T ss_dssp --SCEEEEECC
T ss_pred --eEEEEeecC
Confidence 556666543
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=8.4e-30 Score=212.31 Aligned_cols=157 Identities=23% Similarity=0.411 Sum_probs=136.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhcc----C-------CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
+++++|||+|||+++|+++|.++|++| | .|.++.+. .++|||||+|.++++|++|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 467999999999999999999999999 7 78888775 35899999999999999999 799999999
Q ss_pred eEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhh
Q 019418 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRM 152 (341)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~ 152 (341)
+.|.|.++..... .....+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 78 ~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~------ 131 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA------ 131 (172)
T ss_dssp EECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT------
T ss_pred ceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC------
Confidence 9999998765432 12247999999999999999999999999999999998864
Q ss_pred hhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcC
Q 019418 153 LRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLD 232 (341)
Q Consensus 153 ~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~ 232 (341)
+|.+ +++|||+|.+.++|.+|++.||
T Consensus 132 ---------------~g~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 132 ---------------TGLS---------------------------------------KGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp ---------------TCSE---------------------------------------EEEEEEEESSTTHHHHHHHHHT
T ss_pred ---------------CCCc---------------------------------------ceEEEEEeCCHHHHHHHHHHcC
Confidence 2322 5699999999999999999999
Q ss_pred ccccccccccceEEEe
Q 019418 233 RSEFRNAFSRSYVRVR 248 (341)
Q Consensus 233 g~~~~g~~~~~~~~~~ 248 (341)
|..++| ..+.+.
T Consensus 158 g~~~~g----~~l~V~ 169 (172)
T 2g4b_A 158 GMQLGD----KKLLVQ 169 (172)
T ss_dssp TCEETT----EECEEE
T ss_pred CCEECC----eEEEEE
Confidence 999999 445544
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.9e-29 Score=219.21 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=141.0
Q ss_pred CCCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.++++|||+|||+ ++|+++|+++|++||+|.+|.|..+. +|||||+|.++++|++|++.|||..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999998654 89999999999999999999999999999999999875
Q ss_pred CCCCCCCCC-----CCCCCCCCC--C--------CCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCc
Q 019418 83 GRRHSSSMD-----RYSSYSSGG--S--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (341)
Q Consensus 83 ~~~~~~~~~-----~~~~~~~~~--~--------~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~ 146 (341)
......... ....+.... . ......+..+|||+|||.++++++|+++|.+|| .|..+.+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~- 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-
Confidence 422111100 000000000 0 001123468999999999999999999999999 99999986532
Q ss_pred hhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHH
Q 019418 147 ELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKY 226 (341)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~ 226 (341)
+++|||+|.+.++|.+
T Consensus 189 ----------------------------------------------------------------~g~afV~f~~~~~A~~ 204 (229)
T 2adc_A 189 ----------------------------------------------------------------RKMALIQMGSVEEAVQ 204 (229)
T ss_dssp ----------------------------------------------------------------TTCEEEEESSHHHHHH
T ss_pred ----------------------------------------------------------------CcEEEEEECCHHHHHH
Confidence 3699999999999999
Q ss_pred HHHhcCccccc-cccccceEEEeec
Q 019418 227 AIRKLDRSEFR-NAFSRSYVRVREY 250 (341)
Q Consensus 227 Ai~~l~g~~~~-g~~~~~~~~~~~~ 250 (341)
|+..|||..+. | ..+.+...
T Consensus 205 Ai~~l~g~~~~~g----~~l~v~~a 225 (229)
T 2adc_A 205 ALIDLHNHDLGEN----HHLRVSFS 225 (229)
T ss_dssp HHHHHTTCBSSSS----CBCEEEEC
T ss_pred HHHHHCCCccCCC----CeEEEEEe
Confidence 99999999998 7 45655544
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.9e-29 Score=213.35 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=136.6
Q ss_pred CCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++++|||+|||+ ++|+++|.++|++||+|.+|.|..+. +|||||+|.++++|++|++.|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997654 799999999999999999999999999999999998754
Q ss_pred CCCCCCCC-----CCCCCCCC----------CCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCch
Q 019418 84 RRHSSSMD-----RYSSYSSG----------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGE 147 (341)
Q Consensus 84 ~~~~~~~~-----~~~~~~~~----------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~ 147 (341)
........ ....+... ........+..+|||+|||..+++++|+++|.+|| .|..+.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-- 157 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-- 157 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--
Confidence 32111100 00000000 00111223468999999999999999999999999 99999986543
Q ss_pred hhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHH
Q 019418 148 LHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYA 227 (341)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~A 227 (341)
+++|||+|.+.++|.+|
T Consensus 158 ---------------------------------------------------------------~g~afV~f~~~~~A~~A 174 (198)
T 1qm9_A 158 ---------------------------------------------------------------RKMALIQMGSVEEAVQA 174 (198)
T ss_dssp ---------------------------------------------------------------SSCEEEECSSHHHHHHH
T ss_pred ---------------------------------------------------------------CcEEEEEeCCHHHHHHH
Confidence 36999999999999999
Q ss_pred HHhcCccccc-cc
Q 019418 228 IRKLDRSEFR-NA 239 (341)
Q Consensus 228 i~~l~g~~~~-g~ 239 (341)
+..|||..+. |+
T Consensus 175 ~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 175 LIDLHNHDLGENH 187 (198)
T ss_dssp HHHHTSSCCSSCC
T ss_pred HHHhcCCccCCCC
Confidence 9999999998 74
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.8e-30 Score=215.99 Aligned_cols=161 Identities=17% Similarity=0.264 Sum_probs=135.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i--~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|.+||.|..+.+ ..++.++|||||+|.++++|++|++ |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 468899999999999999999999999997766333 2367889999999999999999995 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
..... .......+|||+|||..+++++|+++|.+||+|..+ ...
T Consensus 89 ~~~~~------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~-------------- 132 (175)
T 1fje_B 89 KGRDS------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD-------------- 132 (175)
T ss_dssp CCSSC------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS--------------
T ss_pred CCccc------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC--------------
Confidence 76432 223355799999999999999999999999988776 111
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+. .+++|||+|.+.++|.+|+..|||..++|
T Consensus 133 --------~~---------------------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 163 (175)
T 1fje_B 133 --------GK---------------------------------------SKGIAYIEFKSEADAEKNLEEKQGAEIDG-- 163 (175)
T ss_dssp --------SS---------------------------------------CCSEEEEECSSHHHHHHHHHHHTEEEETT--
T ss_pred --------CC---------------------------------------CceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 11 25799999999999999999999999999
Q ss_pred ccceEEEeecc
Q 019418 241 SRSYVRVREYD 251 (341)
Q Consensus 241 ~~~~~~~~~~~ 251 (341)
..+.+....
T Consensus 164 --~~i~v~~a~ 172 (175)
T 1fje_B 164 --RSVSLYYTG 172 (175)
T ss_dssp --EEEEEEECS
T ss_pred --eEEEEEecC
Confidence 557766543
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.3e-28 Score=220.28 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=145.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999999999864 6778999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCC-CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccc
Q 019418 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGE 159 (341)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~ 159 (341)
...... .......+|||+|||..+ ++++|+++|.+||.|..+.|..+..
T Consensus 173 ~~~~~~-----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~------------- 222 (284)
T 3smz_A 173 DAGQLT-----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD------------- 222 (284)
T ss_dssp CGGGCC-----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-------------
T ss_pred CCCCCC-----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-------------
Confidence 764322 222345789999999995 9999999999999999999988755
Q ss_pred cchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 160 VNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 160 ~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
|.+ +++|||+|.+.++|.+|+..|||..+.|
T Consensus 223 ---------g~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g- 253 (284)
T 3smz_A 223 ---------GQL---------------------------------------KGFAVLEYETAEMAEEAQQQADGLSLGG- 253 (284)
T ss_dssp ---------CCE---------------------------------------EEEEEEECSSHHHHHHHHHHHTTCEETT-
T ss_pred ---------CCc---------------------------------------ccEEEEEeCCHHHHHHHHHHhCCCccCC-
Confidence 222 5699999999999999999999999999
Q ss_pred cccceEEEeeccCC
Q 019418 240 FSRSYVRVREYDSR 253 (341)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (341)
..+.+......
T Consensus 254 ---~~l~v~~a~~~ 264 (284)
T 3smz_A 254 ---SHLRVSFCAPG 264 (284)
T ss_dssp ---EECEEEECCSS
T ss_pred ---eEEEEEEecCC
Confidence 56776665443
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.7e-28 Score=216.36 Aligned_cols=158 Identities=25% Similarity=0.335 Sum_probs=135.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 3567999999999999999999999999999999964 4899999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
.+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 97 --------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------- 133 (261)
T 3sde_A 97 --------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----------------- 133 (261)
T ss_dssp --------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----------------
T ss_pred --------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC-----------------
Confidence 5899999999999999999999999999999988744
Q ss_pred hhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccc
Q 019418 164 EIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 243 (341)
Q Consensus 164 ~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 243 (341)
|.+ +++|||+|.+.++|.+|+..||+..+-......
T Consensus 134 -----g~~---------------------------------------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 134 -----GRA---------------------------------------TGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp -----SCE---------------------------------------EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred -----CCc---------------------------------------CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 333 569999999999999999999654443111124
Q ss_pred eEEEeecc
Q 019418 244 YVRVREYD 251 (341)
Q Consensus 244 ~~~~~~~~ 251 (341)
.+.|....
T Consensus 170 ~i~v~~~~ 177 (261)
T 3sde_A 170 PVIVEPME 177 (261)
T ss_dssp BCEEEECC
T ss_pred eEEEeecc
Confidence 55555443
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=7.3e-28 Score=216.97 Aligned_cols=154 Identities=23% Similarity=0.277 Sum_probs=137.3
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.++++|||+|||+++|+++|.++|++|| |..|.+ +.++|||||+|.++++|++|++.|||..|.|+.|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 3679999999999999999999999999 999988 466899999999999999999999999999999999986421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchh
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWG 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
.+|||+|||..+++++|+++|.+||.|..+.+..+..
T Consensus 96 --------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~----------------- 132 (284)
T 3smz_A 96 --------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER----------------- 132 (284)
T ss_dssp --------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------------
T ss_pred --------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC-----------------
Confidence 5899999999999999999999999999999988765
Q ss_pred hhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccc
Q 019418 164 EIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 243 (341)
Q Consensus 164 ~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 243 (341)
+|.+ +++|||+|.+.++|..|+..|+|..+.| .
T Consensus 133 ----~g~~---------------------------------------~g~afV~f~~~~~a~~A~~~l~~~~~~g----~ 165 (284)
T 3smz_A 133 ----TGQS---------------------------------------KGYGFAEYMKKDSAARAKSDLLGKPLGP----R 165 (284)
T ss_dssp ----TCCE---------------------------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred ----CCcc---------------------------------------ceEEEEEECCHHHHHHHHHHhCCCEeCC----c
Confidence 2333 5699999999999999999999999999 4
Q ss_pred eEEEeecc
Q 019418 244 YVRVREYD 251 (341)
Q Consensus 244 ~~~~~~~~ 251 (341)
.+.+....
T Consensus 166 ~i~v~~a~ 173 (284)
T 3smz_A 166 TLYVHWTD 173 (284)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 56665543
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=9.9e-28 Score=216.99 Aligned_cols=170 Identities=16% Similarity=0.288 Sum_probs=139.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|.++|++|| +|..|.|+. .+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999965 45789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhccccc
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEV 160 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~ 160 (341)
+....... ........+|||+|||.. +++++|+++|.+||.|..+.|..+..
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~-------------- 248 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK-------------- 248 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC--------------
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--------------
Confidence 65432211 123344579999999999 99999999999999999999987542
Q ss_pred chhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 161 NWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 161 ~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.+| ..+++|||+|.+.++|.+|+ .|||..+.|
T Consensus 249 ------~tg---------------------------------------~~~g~afV~F~~~~~A~~A~-~l~g~~~~g-- 280 (292)
T 2ghp_A 249 ------EHS---------------------------------------FNNCCAFMVFENKDSAERAL-QMNRSLLGN-- 280 (292)
T ss_dssp ------------------------------------------------CCCEEEEEEESSHHHHHHHG-GGTTEEETT--
T ss_pred ------cCC---------------------------------------CCceEEEEEeCCHHHHHHHH-HhcCCEECC--
Confidence 001 22579999999999999999 999999999
Q ss_pred ccceEEEeecc
Q 019418 241 SRSYVRVREYD 251 (341)
Q Consensus 241 ~~~~~~~~~~~ 251 (341)
..+.|....
T Consensus 281 --~~i~V~~a~ 289 (292)
T 2ghp_A 281 --REISVSLAD 289 (292)
T ss_dssp --EEEEEEECC
T ss_pred --cEEEEEEec
Confidence 567766554
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.6e-27 Score=215.65 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=132.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC-CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~-~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.+.++|||+|||+++|+++|.++|+.||+|..|.|+.+ ..++|||||+|.++++|++|++ |||..|.|+.|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999763 3358999999999999999996 899999999999998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCchhhhhhhhhcccccc
Q 019418 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGELHWRMLRFWGGEVN 161 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (341)
.+|||+|||..+++++|.++|.+|| .|..+.+..+..
T Consensus 118 ---------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~--------------- 155 (292)
T 2ghp_A 118 ---------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF--------------- 155 (292)
T ss_dssp ---------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------
T ss_pred ---------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC---------------
Confidence 6999999999999999999999999 999999987654
Q ss_pred hhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccc
Q 019418 162 WGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 241 (341)
Q Consensus 162 ~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~ 241 (341)
|. .+++|||+|.+.++|.+|+..|||..+.|
T Consensus 156 -------~~---------------------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 186 (292)
T 2ghp_A 156 -------NT---------------------------------------SRRFAYIDVTSKEDARYCVEKLNGLKIEG--- 186 (292)
T ss_dssp -------------------------------------------------CCEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred -------CC---------------------------------------cceEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 11 25699999999999999999999999999
Q ss_pred cceEEEeecc
Q 019418 242 RSYVRVREYD 251 (341)
Q Consensus 242 ~~~~~~~~~~ 251 (341)
..+.+....
T Consensus 187 -~~l~v~~a~ 195 (292)
T 2ghp_A 187 -YTLVTKVSN 195 (292)
T ss_dssp -EECEEEECC
T ss_pred -cEEEEEECC
Confidence 556665443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.9e-24 Score=167.01 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=73.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+++|||+|||+++|+++|+++|++||+|.+|+|+. .+.++|||||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467999999999999999999999999999999966 4557899999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHH
Q 019418 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 125 (341)
...... .........+|||+|||+++|++.
T Consensus 84 ~~~~~~------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------------
T ss_pred cccccc------------cccccCCCCceEeCCCCCCccccc
Confidence 432111 012223335799999999998764
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=9.3e-22 Score=148.47 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++|++.|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 568999999999999999999999999999999964 57889999999999999999999999999999999999997
Q ss_pred C
Q 019418 82 G 82 (341)
Q Consensus 82 ~ 82 (341)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=2.5e-20 Score=176.74 Aligned_cols=81 Identities=35% Similarity=0.599 Sum_probs=75.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||++||+++|.++|++||+|+.|.|+. ++.++|||||+|.++++|++||+.|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999964 6788999999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8643
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.3e-21 Score=152.02 Aligned_cols=106 Identities=29% Similarity=0.435 Sum_probs=96.1
Q ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...++++|||+|||.++|+++|.++|++||+|..|.|+.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45688999999999999999999999999999999998888889999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC
Q 019418 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (341)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~ 135 (341)
+... ..+++...++++|.++|.+||-
T Consensus 84 ~~~~----------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRA----------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHH----------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CChh----------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 5331 1467777889999999999984
No 25
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=7.3e-21 Score=144.15 Aligned_cols=100 Identities=41% Similarity=0.573 Sum_probs=83.9
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~ 86 (341)
++|||+|||+++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|++.|||..|+|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999866 7999999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeeeeCCC
Q 019418 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (341)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 118 (341)
.... ..+........|||+||+
T Consensus 79 ~~~~----------~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFD----------RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCC----------SCCCSCCCCSCCCSCCCC
T ss_pred ccCC----------CCCccccCCCceecCCCC
Confidence 1110 111122345789999997
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=142.75 Aligned_cols=84 Identities=58% Similarity=1.042 Sum_probs=78.7
Q ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=141.14 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=72.7
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEEc
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELA 80 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~l-ng~~i~g~~l~v~~~ 80 (341)
+++|||+|||+++|+++|+++|++|| +|.+|+|+. ++.++|||||+|.++++|++||+.| ++..|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999965 5889999999999999999999877 467899999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=143.20 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+. +++++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999965 578899999999999999999999999999999999999
Q ss_pred ccCC
Q 019418 80 AHGG 83 (341)
Q Consensus 80 ~~~~ 83 (341)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=137.34 Aligned_cols=83 Identities=31% Similarity=0.476 Sum_probs=77.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999965 578899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=142.48 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=78.7
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
|...+.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4467889999999999999999999999999999999976 67889999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
+++....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986543
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=139.77 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln--g~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|++||+|++|.|+.+ +|||||+|.++++|++|++.|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 468899999999999999999999999999999999854 8999999999999999999886 47899999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
+....
T Consensus 90 ~~~~~ 94 (105)
T 1sjq_A 90 NHKEL 94 (105)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 86543
No 32
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=5.7e-20 Score=174.32 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=101.3
Q ss_pred HHHHhhccCCEeEEEe----ec-CCCCCcEE-----EEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCC
Q 019418 23 VEDLFYKYGPIVDIDL----KI-PPRPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDR 92 (341)
Q Consensus 23 l~~~F~~~G~I~~i~i----~~-~~~~~g~a-----fV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~ 92 (341)
|.+||.++|+|..|.. +. .....+|+ |+.|.+..++..++..++......+..................
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~- 87 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK- 87 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 7899999999988733 21 11233444 8888887766665554443332221100000000000000000
Q ss_pred CCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhcc
Q 019418 93 YSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRIL 172 (341)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~ 172 (341)
.+...........+..+|||+|||..+++++|.++|.+||.|+.|.|+.+.. +|.+
T Consensus 88 --~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------------tg~~- 143 (437)
T 3pgw_S 88 --MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR---------------------SGKP- 143 (437)
T ss_pred --hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC---------------------CCCc-
Confidence 0000000011223447999999999999999999999999999999988754 2332
Q ss_pred CCCCccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 173 GGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 173 g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
++||||+|.+.++|.+||..|||..|.| ..|.|....
T Consensus 144 --------------------------------------kG~aFV~F~~~e~A~~Ai~~lng~~i~g----r~i~V~~a~ 180 (437)
T 3pgw_S 144 --------------------------------------RGYAFIEYEHERDMHSAYKHADGKKIDG----RRVLVDVER 180 (437)
T ss_pred --------------------------------------cceEEEeeccHHHHHHHHHHcCCCEECC----EEEEEEEeC
Confidence 5799999999999999999999999999 455555443
No 33
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=5.8e-20 Score=132.63 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|++|++.||+..+.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4678899999999999999999999999999999975 69999999999999999999999999999999999984
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=137.00 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=76.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ...++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 46789999999999999999999999999999999976 34468999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7543
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=2.3e-19 Score=139.12 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=77.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35788999999999999999999999999999999965 577899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019418 80 AHGGRRH 86 (341)
Q Consensus 80 ~~~~~~~ 86 (341)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=8.8e-20 Score=133.53 Aligned_cols=79 Identities=33% Similarity=0.564 Sum_probs=73.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45889999999999999999999999999999999954 577899999999999999999999999999999999998
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1e-19 Score=132.58 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=73.4
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 578899999999999999999999999999999999999986
Q ss_pred C
Q 019418 83 G 83 (341)
Q Consensus 83 ~ 83 (341)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=3.2e-19 Score=146.30 Aligned_cols=147 Identities=16% Similarity=0.040 Sum_probs=105.1
Q ss_pred EEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeee
Q 019418 36 IDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLV 114 (341)
Q Consensus 36 i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 114 (341)
+.|.. ....+|||||+|.++++|++|++.+++....+..+.+........... ...............+|||
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEE
Confidence 44433 336799999999999999999988886544333333322111000000 0000011123344589999
Q ss_pred eCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecch
Q 019418 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMR 194 (341)
Q Consensus 115 ~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~ 194 (341)
+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~---------------------~g~~----------------------- 111 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY---------------------TKES----------------------- 111 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSS---------------------CTTS-----------------------
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCcc-----------------------
Confidence 99999999999999999999999999988764 2333
Q ss_pred hhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 195 LSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 195 ~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|..|+..|||..+.| ..+.|......
T Consensus 112 ----------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 150 (158)
T 2kn4_A 112 ----------------RGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 150 (158)
T ss_dssp ----------------CCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCS
T ss_pred ----------------ceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCC
Confidence 5699999999999999999999999999 66777766554
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.2e-19 Score=136.13 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=75.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
++++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 578999999999999999999999999999999965 47889999999999999999999999999999999999998
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=134.13 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=77.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999966 478899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.+...
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987543
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=137.97 Aligned_cols=83 Identities=40% Similarity=0.578 Sum_probs=77.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999965 478899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987654
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=134.27 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=72.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999965 5778999999999999999999999999999999999999
Q ss_pred cCC
Q 019418 81 HGG 83 (341)
Q Consensus 81 ~~~ 83 (341)
.+.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=136.95 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec------CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~------~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
+.+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999999999999999999999999999965 236789999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 019418 77 VELAHGGRR 85 (341)
Q Consensus 77 v~~~~~~~~ 85 (341)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987553
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=137.81 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=72.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCC--EeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----eeCCe
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~----~i~g~ 73 (341)
+..-.||||+|||+++|+++|.++|++||. |.+|+|+. ++.++|||||+|.+.++|++||+.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 346679999999999999999999999995 66888855 5889999999999999999999999997 48999
Q ss_pred EEEEEEccC
Q 019418 74 RLRVELAHG 82 (341)
Q Consensus 74 ~l~v~~~~~ 82 (341)
+|.|.+|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.07 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=77.7
Q ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
...+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346889999999999999999999999999999999965 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87654
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=135.41 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHH----HHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.+.++|||+|||+++|+++|+ ++|++||+|.+|.|+.+...+|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 367899999999999999999 9999999999999986544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
+++..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97654
No 47
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=143.07 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=75.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHH----HHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
..++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|+.|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578899999999999999876 799999999999998888999999999999999999999999999999999999
Q ss_pred EccCC
Q 019418 79 LAHGG 83 (341)
Q Consensus 79 ~~~~~ 83 (341)
++...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99864
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=4.4e-20 Score=138.70 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=76.8
Q ss_pred CCCCCCCEEEeCCCCCCCCHHHHH----HHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
|+..++++|||+|||.++|+++|. ++|++||+|..|.|..++.++|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 466789999999999999999999 9999999999999987777899999999999999999999999999999999
Q ss_pred EEEccCCC
Q 019418 77 VELAHGGR 84 (341)
Q Consensus 77 v~~~~~~~ 84 (341)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998653
No 49
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1e-19 Score=135.30 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.++|||+|||.++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999975 67789999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=134.91 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=76.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999999965 57789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987554
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=135.60 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEE-Eeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i-~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
..++++|||+|||+++|+++|.++|++||+|..| .|+. ++.++|||||+|.++++|++|++.|||..|+|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 8865 57889999999999999999999999999999999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
++.+...
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987553
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=136.36 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=76.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999965 5677899999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 53
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=137.24 Aligned_cols=82 Identities=33% Similarity=0.528 Sum_probs=76.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 4789999999999999999999999999999999965 4788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=136.80 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=77.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35789999999999999999999999999999999965 578899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 55
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=135.15 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCce--eCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~--i~g~~l~v~~~~ 81 (341)
.++++|||+|||+++|+++|.++|++||+|.+|.|+. .+|||||+|.+.++|++|++.||+.. |.|++|.|.+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5889999999999999999999999999999999974 48999999999999999999999875 789999999997
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.6e-19 Score=134.66 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=76.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC-CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~-~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+.+ ..++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 457899999999999999999999999999999999763 4579999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
+...
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7653
No 57
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=137.78 Aligned_cols=82 Identities=34% Similarity=0.555 Sum_probs=76.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+...
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=137.07 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=75.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45789999999999999999999999999999999965 578899999999999999999999998 89999999999
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97643
No 59
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=4.3e-19 Score=134.85 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467899999999999999999999999999999997 779999999999999999999999999999999999876
Q ss_pred CCCC
Q 019418 84 RRHS 87 (341)
Q Consensus 84 ~~~~ 87 (341)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5433
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=134.07 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=73.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4678999999999999999999999999999999966 4778999999999999999999999999999999999997
Q ss_pred c
Q 019418 81 H 81 (341)
Q Consensus 81 ~ 81 (341)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=137.05 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=76.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..++++|||+|||.++|+++|+++|.+||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35789999999999999999999999999999999965 5677899999999999999999999999999999999998
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76443
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=136.30 Aligned_cols=82 Identities=33% Similarity=0.579 Sum_probs=76.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++||+.|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87553
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=136.56 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.8
Q ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHhhccCCEe-EEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE---
Q 019418 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--- 74 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~-~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~--- 74 (341)
+..++++|||+|||+++|+++|+++|++||+|. .|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456899999999999999999999999999999 999964 5788899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 019418 75 -LRVELAHGGR 84 (341)
Q Consensus 75 -l~v~~~~~~~ 84 (341)
|.|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998654
No 64
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=131.65 Aligned_cols=78 Identities=36% Similarity=0.635 Sum_probs=73.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++|++.|||..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 5678999999999999999999999999999999998 66999999999999999999999999999999999987
Q ss_pred CCC
Q 019418 83 GRR 85 (341)
Q Consensus 83 ~~~ 85 (341)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=136.77 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng--~~i~g~~l~v~~ 79 (341)
..++++|||+|||+ ++|+++|.++|++||+|.+|.|+.+ +|||||+|.++++|++||+.||+ ..|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35889999999999 9999999999999999999999753 68999999999999999999886 459999999999
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
++..+
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98644
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=131.51 Aligned_cols=81 Identities=27% Similarity=0.516 Sum_probs=73.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC---CC-CCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~---~~-~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
...++|||+|||.++|+++|.++|++||+|..|.|+.+ +. ++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 46789999999999999999999999999999999653 23 799999999999999999999999999999999999
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97643
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.73 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=74.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45789999999999999999999999999999999965 4677899999999999999999999999999999999998
Q ss_pred cC
Q 019418 81 HG 82 (341)
Q Consensus 81 ~~ 82 (341)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 68
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=133.92 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-----eEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRV 77 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g-----~~l~v 77 (341)
....++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|.++++|++||+.|||..|+| +.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 356899999999999999999999999999999999864 899999999999999999999999999 99999
Q ss_pred EEccCCCC
Q 019418 78 ELAHGGRR 85 (341)
Q Consensus 78 ~~~~~~~~ 85 (341)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99987543
No 69
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=138.82 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=73.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng--~~i~g~~l~v~~~ 80 (341)
..++++|||+|||+++|+++|+++|++||+|++|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 457899999999999999999999999999999999854 89999999999999999998874 6899999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
+....
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 86543
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=133.37 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=72.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhc--CCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~l--ng~~i~g~~l~v~~~ 80 (341)
..++++|||+|||+++|+++|+++|++||+|.+|.|+.. +|||||+|.+.++|++|++.| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 357899999999999999999999999999999998753 899999999999999999977 577899999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
+....
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 86543
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.9e-19 Score=139.68 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=76.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999965 5778899999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87653
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=135.64 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=75.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecC----CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~----~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
..+.++|||+|||+++|+++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|++|| .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999763 778999999999999999999 899999999999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987553
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=134.38 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=74.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35778999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 74
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=3.5e-19 Score=135.79 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=75.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC---eEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g---~~l~v~ 78 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 56778999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987654
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=135.04 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=76.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec----CCCCCcEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRV 77 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~----~~~~~g~afV~F~~~e~A~~Ai~~l-ng~~i~g~~l~v 77 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 45789999999999999999999999999999999954 5778999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 019418 78 ELAHGGRR 85 (341)
Q Consensus 78 ~~~~~~~~ 85 (341)
.++.....
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 76
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=9e-19 Score=142.41 Aligned_cols=137 Identities=19% Similarity=0.132 Sum_probs=107.6
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCC
Q 019418 42 PRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120 (341)
Q Consensus 42 ~~~~g~afV~F~~~e~A~~Ai~~l-ng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 120 (341)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++........... ...............+|||+|||.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH----HHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS----SCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc----cccccccccCCCCCCEEEEeCCCCC
Confidence 356899999999999999999999 9999999 999998764211000000 0000111234455689999999999
Q ss_pred CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhh
Q 019418 121 ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKH 200 (341)
Q Consensus 121 ~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~ 200 (341)
+++++|+++|.+||.|..+.|..+.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~~------------------------------------------------------- 109 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARNP------------------------------------------------------- 109 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSSS-------------------------------------------------------
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeCC-------------------------------------------------------
Confidence 9999999999999999999998763
Q ss_pred hcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 201 FRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 201 ~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|..|+..|||..+.| ..+.|.....
T Consensus 110 ----------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 147 (150)
T 2i2y_A 110 ----------PGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNG 147 (150)
T ss_dssp ----------CSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCC
T ss_pred ----------CcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCC
Confidence 3699999999999999999999999999 5566665543
No 77
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=137.19 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=75.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.++++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4678999999999999999999999999999999965 4778999999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8643
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3.1e-19 Score=136.37 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcee---CCeEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i---~g~~l~ 76 (341)
+.+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999966 578899999999999999999999999988 899999
Q ss_pred EEEccCCCC
Q 019418 77 VELAHGGRR 85 (341)
Q Consensus 77 v~~~~~~~~ 85 (341)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987553
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=130.66 Aligned_cols=78 Identities=33% Similarity=0.642 Sum_probs=73.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..+.++|||+|||.++|+++|+++|++||+|..|.|+ +|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4578999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CCC
Q 019418 83 GRR 85 (341)
Q Consensus 83 ~~~ 85 (341)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=135.76 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcC------CceeCCeE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~ln------g~~i~g~~ 74 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999975 57789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 019418 75 LRVELAHGGRR 85 (341)
Q Consensus 75 l~v~~~~~~~~ 85 (341)
|.|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987543
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=136.50 Aligned_cols=79 Identities=15% Similarity=0.395 Sum_probs=73.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|.++|++||+|.+|.|+. .+.++|||||+|.++++|++||. +||..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34678999999999999999999999999999999976 47789999999999999999999 8999999999999987
Q ss_pred cC
Q 019418 81 HG 82 (341)
Q Consensus 81 ~~ 82 (341)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 82
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=4.1e-19 Score=136.64 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.++++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8644
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=7.8e-20 Score=138.21 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=74.1
Q ss_pred CCCCEEEeCCCCC------CCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-e
Q 019418 4 RSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-Y 73 (341)
Q Consensus 4 ~~~~~l~V~nLp~------~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g-~ 73 (341)
..+++|||+|||. ++++++|.++|++||+|.+|.|+. +++++|||||+|.++++|++||+.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999965 57899999999999999999999999999999 9
Q ss_pred EEEEEEccC
Q 019418 74 RLRVELAHG 82 (341)
Q Consensus 74 ~l~v~~~~~ 82 (341)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 84
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=130.14 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=73.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..+.++|||+|||+++|+++|.++|++||+|..|.|+ ++||||+|.+.++|++|++.|||..|+|+.|.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3578999999999999999999999999999999998 66999999999999999999999999999999999987
Q ss_pred CCC
Q 019418 83 GRR 85 (341)
Q Consensus 83 ~~~ 85 (341)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 85
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=5.1e-20 Score=136.47 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=68.4
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccC--CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.+|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999965 67889999999999999999999999999999999999998
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=133.68 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc--eeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~--~i~g~~l~v~~~~ 81 (341)
.++++|||+|||+++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.||+. .|.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5789999999999999999999999999999999875 3899999999999999999988764 5999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6543
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7.4e-19 Score=133.53 Aligned_cols=81 Identities=27% Similarity=0.520 Sum_probs=74.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999965 4778999999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987543
No 88
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=5.1e-19 Score=135.34 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=73.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4688999999999999999999999999999999965 67789999999999999999999999999999999999975
No 89
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=4.2e-19 Score=136.24 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
...++|||+|||+++|+++|+++|++|| +|..|.|.. ..++|||||+|.+.++|++||+.|||..|+|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4667999999999999999999999999 999999853 45799999999999999999999999999999999999875
Q ss_pred C
Q 019418 83 G 83 (341)
Q Consensus 83 ~ 83 (341)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=134.97 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=74.4
Q ss_pred CCCCEEEeCCCCCCC------CHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe-EE
Q 019418 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~------t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~-~l 75 (341)
..+++|||+|||+.+ |+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 7899999999999999999964 678899999999999999999999999999998 99
Q ss_pred EEEEccCC
Q 019418 76 RVELAHGG 83 (341)
Q Consensus 76 ~v~~~~~~ 83 (341)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.3e-19 Score=138.30 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999965 578899999999999999999999999999999999998
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=132.00 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=73.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC--CeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~--g~~l~v~~~ 80 (341)
..++++|||+|||+++|+++|.++|++||+|..|.|... +|||||+|.+.++|++|++.|||..|. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 357799999999999999999999999999999999743 789999999999999999999999999 999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=137.69 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=74.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHH---HHhhccCCEeEEEeecC------CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~I~~i~i~~~------~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
.+.++|||+|||+++|+++|. ++|++||+|..|.|+.+ +.++|||||+|.++++|++||+.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 99999999999999653 256799999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 019418 75 LRVELAHGGR 84 (341)
Q Consensus 75 l~v~~~~~~~ 84 (341)
|.|.++.+..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998754
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=3.1e-19 Score=141.25 Aligned_cols=82 Identities=34% Similarity=0.570 Sum_probs=76.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999975 578899999999999999999999999999999999999
Q ss_pred ccCCC
Q 019418 80 AHGGR 84 (341)
Q Consensus 80 ~~~~~ 84 (341)
+.+.+
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98654
No 95
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=136.16 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=76.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEe--------EEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~--------~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
..+.++|||+|||.++|+++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999999998 688864 5788999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 019418 72 GYRLRVELAHGGRR 85 (341)
Q Consensus 72 g~~l~v~~~~~~~~ 85 (341)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987553
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=8.9e-19 Score=129.29 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=73.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999964 6788999999999999999999 899999999999999997
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=135.63 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=75.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..+.++|||+|||.++|+++|+++|++||+|..|.|.. .+.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999965 35579999999999999999999999999999999999987
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
+.
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 98
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=139.72 Aligned_cols=84 Identities=31% Similarity=0.581 Sum_probs=77.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||.++|+++|.++|+.||+|+.|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999965 467799999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019418 80 AHGGRRH 86 (341)
Q Consensus 80 ~~~~~~~ 86 (341)
+......
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=135.88 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35788999999999999999999999999999999964 577899999999999999999999999999999999999
Q ss_pred ccCC
Q 019418 80 AHGG 83 (341)
Q Consensus 80 ~~~~ 83 (341)
+++.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=128.33 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=71.3
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
+.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46889999999999999999999999999999999964 57889999999999999999997 588899999999987
Q ss_pred c
Q 019418 80 A 80 (341)
Q Consensus 80 ~ 80 (341)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=134.08 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=76.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhc-cCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCce-eCCeEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~-i~g~~l~v~ 78 (341)
..+.++|||+|||+++|+++|.++|++ ||+|..|.|+. ++.++|||||+|.+.++|++||+.|||.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 457899999999999999999999999 99999999965 67789999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 019418 79 LAHGGRR 85 (341)
Q Consensus 79 ~~~~~~~ 85 (341)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=130.03 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=67.4
Q ss_pred CCEEEeCCCCCCC------CHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe-EEEE
Q 019418 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (341)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~-~l~v 77 (341)
+++|||+|||..+ |+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7899999999999999999964 788899999999999999999999999999999 8876
No 103
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=6.3e-19 Score=138.96 Aligned_cols=82 Identities=24% Similarity=0.492 Sum_probs=75.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999964 6778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 86543
No 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=133.21 Aligned_cols=79 Identities=29% Similarity=0.429 Sum_probs=73.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--------EEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
..+.++|||+|||.++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 357899999999999999999999999999999 88864 5788999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 019418 72 GYRLRVELAH 81 (341)
Q Consensus 72 g~~l~v~~~~ 81 (341)
|+.|.|.+++
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=132.55 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCC-EeEEEee-c---CCCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCeEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~i~i~-~---~~~~~g~afV~F~~~e~A~~Ai~~ln--g~~i~g~~l 75 (341)
+.+.++|||+|||+++|+++|.++|.+||+ |..|.|+ . ++.++|||||+|.+.++|++|++.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999997 3 46789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 019418 76 RVELAHGGRR 85 (341)
Q Consensus 76 ~v~~~~~~~~ 85 (341)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=132.74 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=74.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999865 899999999999999999999999999999999999876
Q ss_pred CC
Q 019418 84 RR 85 (341)
Q Consensus 84 ~~ 85 (341)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=134.12 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=75.8
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++||+. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999965 577889999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 986553
No 108
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=1.9e-18 Score=129.74 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=71.8
Q ss_pred CCCCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..++++|||+|||. ++|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 35789999999998 99999999999999999999995 8999999999999999999999999999999999987
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 109
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-19 Score=136.81 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=72.2
Q ss_pred CCCCCCEEEeCCCCCC-CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC--CceeCCeEEEEE
Q 019418 2 SSRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVE 78 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln--g~~i~g~~l~v~ 78 (341)
...++++|||+|||++ +|+++|.++|++||+|.+|.|+. .+|||||+|.+.++|++|++.|| +..|.|++|.|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3468899999999998 99999999999999999999973 48999999999999999999886 456999999999
Q ss_pred EccCCC
Q 019418 79 LAHGGR 84 (341)
Q Consensus 79 ~~~~~~ 84 (341)
+++...
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 997654
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.2e-18 Score=133.57 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=73.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+.+.++|||+|||.++|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999999999999999999999999999998 89999999999999999999999999999999999986
Q ss_pred CC
Q 019418 83 GR 84 (341)
Q Consensus 83 ~~ 84 (341)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 111
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-18 Score=128.49 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=72.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhcc--CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.+.++|||+|||+++|+++|+++|++| |.|..|.+. +|||||+|.+.++|++||+.|||..|+|+.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 467899999999999999999999999 999999886 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 112
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=132.06 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=71.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 4789999999999999999999999999999999965 4788999999999999999999975 59999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=130.85 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=72.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||+++|+++|+++|++||+|. +....++.++|||||+|.++++|++||+.|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 4789999999999999999999999999882 222236788999999999999999999999999999999999999876
Q ss_pred CC
Q 019418 84 RR 85 (341)
Q Consensus 84 ~~ 85 (341)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 114
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.7e-18 Score=135.01 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=76.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.++++|||+|||.++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4678999999999999999999999999999999965 57789999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7543
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=129.92 Aligned_cols=78 Identities=32% Similarity=0.464 Sum_probs=73.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||+++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4678999999999999999999999999999999974 3899999999999999999999999999999999999875
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 116
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=142.11 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC--CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++|||+|||+++|+++|.++|++|| +|.+|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999964 688899999999999999999999999999999999999
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=126.69 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=71.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhc-CCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~l-ng~~i~g~~l~v~~~~ 81 (341)
..+.++|||+|||.++|+++|.++|++||+|..|.|.. .+|||||+|.+.++|++|++.| ||..++|+.|.|.+++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35778999999999999999999999999999999985 3799999999999999999998 9999999999999974
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-19 Score=131.45 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999965 578899999999999999999999999999999988766
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 119
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=5.8e-19 Score=126.00 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.8
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999965 57889999999999999999998 9999999999999875
No 120
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=9.3e-19 Score=131.23 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.2
Q ss_pred CCCCCEEEeCCCCC-CCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
..++++|||+|||+ ++|+++|.++|++||+|..|.|. +|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 35889999999998 99999999999999999999996 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 121
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.6e-18 Score=140.66 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=76.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 122
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=131.93 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCCCCCEEEe--CCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee-----CCeE
Q 019418 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (341)
Q Consensus 2 ~~~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i-----~g~~ 74 (341)
+..++++||| +||+.++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4568999999 77999999999999999999999998864 389999999999999999999999998 6899
Q ss_pred EEEEEccCCC
Q 019418 75 LRVELAHGGR 84 (341)
Q Consensus 75 l~v~~~~~~~ 84 (341)
|.|.++...+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987543
No 123
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=127.40 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|++| .|..|.|+. ++.++|||||+|.++++|++||+ |||..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4578999999999999999999999999 999999975 57789999999999999999999 9999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8653
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-19 Score=132.69 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=72.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
...++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.++++|++||+.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999998666543 6778999999999999999999999999999999999998
Q ss_pred cC
Q 019418 81 HG 82 (341)
Q Consensus 81 ~~ 82 (341)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=133.74 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|| .|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 4788999999999999999999 899999999999999987
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=4.4e-19 Score=132.64 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=70.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.++++|++||+.|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 568999999999999999999999999998777643 67789999999999999999999999999999999999875
Q ss_pred C
Q 019418 82 G 82 (341)
Q Consensus 82 ~ 82 (341)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.5e-19 Score=134.78 Aligned_cols=77 Identities=27% Similarity=0.315 Sum_probs=71.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++.++|||+|||+++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999999874 5899999999999999999999999999999999999753
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=134.17 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=74.1
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCE----eEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I----~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.++++|||+|||.++|+++|.++|++||.| ..+.+. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 788999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-19 Score=133.16 Aligned_cols=80 Identities=35% Similarity=0.673 Sum_probs=74.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 568999999999999999999999999999999964 57789999999999999999999999999999999999998
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-18 Score=131.54 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
...++|||+|||.++|+++|.++|++||+|.+|.|. .++|||||+|.+.++|++|+..|||..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 4589999999999999999999999999999999999874
No 131
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=130.18 Aligned_cols=79 Identities=30% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
...++|||+|||+++|+++|+++|++||+|. +.++ ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4588999999999999999999999999996 5555 3577999999999999999999999999999999999999865
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=127.99 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=72.2
Q ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHhhccCC-EeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC-ceeCCeEEEEEE
Q 019418 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVEL 79 (341)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng-~~i~g~~l~v~~ 79 (341)
...+.++|||+|||+++|+++|+++|++||+ |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3567899999999999999999999999999 7666664 489999999999999999999999 999999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.+...
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987543
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=130.72 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..+.++|||+|||+++|+++|.++|++||+|..| ..++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3467899999999999999999999999999877 55788899999999999999999999999999999999999976
Q ss_pred CC
Q 019418 83 GR 84 (341)
Q Consensus 83 ~~ 84 (341)
..
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=130.44 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=72.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE-EEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~-i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|+++|++||.|.. |.|+. +++++|||||+|.++++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 87755 678899999999999999999997 999999999999998
Q ss_pred cCC
Q 019418 81 HGG 83 (341)
Q Consensus 81 ~~~ 83 (341)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 135
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.1e-18 Score=127.73 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=73.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 45789999999999999999999999999999999965 47889999999999999999998 57899999999999
Q ss_pred ccCCCC
Q 019418 80 AHGGRR 85 (341)
Q Consensus 80 ~~~~~~ 85 (341)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987543
No 136
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-19 Score=139.14 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--EEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----eeCCe
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~----~i~g~ 73 (341)
+.+.++|||+|||+++|+++|+++|++||+|.. |+|+. ++.++|||||+|.+. +|++||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457889999999999999999999999999976 88865 678999999999999 999999999999 99999
Q ss_pred EEEEEEccCCCC
Q 019418 74 RLRVELAHGGRR 85 (341)
Q Consensus 74 ~l~v~~~~~~~~ 85 (341)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 137
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3.9e-18 Score=133.99 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=73.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||.++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999999964 6888999999999999999999 799999999999999998
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=4e-18 Score=131.06 Aligned_cols=75 Identities=28% Similarity=0.595 Sum_probs=70.6
Q ss_pred CCCEEEeCCCCCC-CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+++|||+|||++ +|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999999864
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
+
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9e-19 Score=125.60 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=69.0
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++.++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 57889999999999999999999999 9999999999986
No 140
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=5.9e-18 Score=138.74 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999965 6789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.+...
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87543
No 141
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=131.39 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec----CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~----~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
...++|||+|||.++|+++|+++|++|| |..|.|+. +++++|||||+|.+.++|++|| .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999964 5778999999999999999999 7999999999999999
Q ss_pred ccCC
Q 019418 80 AHGG 83 (341)
Q Consensus 80 ~~~~ 83 (341)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9754
No 142
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=4.4e-18 Score=131.93 Aligned_cols=81 Identities=56% Similarity=1.006 Sum_probs=67.2
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
+....++|||+|||.++++++|+++|.+||+|..+.|..+
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---------------------------------------- 51 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---------------------------------------- 51 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------------------------------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------------------------------------
Confidence 3456789999999999999999999999999999998754
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc-ccceEEEeeccC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVRVREYDS 252 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~-~~~~~~~~~~~~ 252 (341)
++|||+|.+.++|++||+.|||..|+|+. ...++++.....
T Consensus 52 ---------------------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 ---------------------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ---------------------------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred ---------------------------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 38999999999999999999999999965 445677776543
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=133.37 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=73.4
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCE-eEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I-~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||.| ..|.|+. ++.++|||||+|.++++|++||+. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3578999999999999999999999999999 7888865 678899999999999999999996 99999999999999
Q ss_pred ccCC
Q 019418 80 AHGG 83 (341)
Q Consensus 80 ~~~~ 83 (341)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 144
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.6e-18 Score=138.32 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
+....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 145
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=131.34 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999976 478899999999999999999997 9999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 146
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=135.91 Aligned_cols=78 Identities=33% Similarity=0.569 Sum_probs=72.6
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999999965 578899999999999999999999999999999999987
Q ss_pred c
Q 019418 80 A 80 (341)
Q Consensus 80 ~ 80 (341)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=129.71 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=73.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
..+.++|||+|||.++|+++|+++|+.|+.|.-+....++.++|||||+|.++++|++||+.|||..|.|+.|.|.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35789999999999999999999999997655544445788899999999999999999999999999999999999987
Q ss_pred CCC
Q 019418 83 GRR 85 (341)
Q Consensus 83 ~~~ 85 (341)
...
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 148
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4e-18 Score=140.81 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4677899999999999999999999999999999964 6778999999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8654
No 149
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=131.68 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=73.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcee--------CCe
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i--------~g~ 73 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5779999999999999999999999999999999965 577799999999999999999999999999 578
Q ss_pred EEEEEEccC
Q 019418 74 RLRVELAHG 82 (341)
Q Consensus 74 ~l~v~~~~~ 82 (341)
+|.|.++.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 150
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=6.6e-19 Score=130.36 Aligned_cols=77 Identities=30% Similarity=0.592 Sum_probs=70.0
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.+ |++|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999965 4788999999999999 99999999999999999999999865
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 151
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=3.4e-18 Score=125.98 Aligned_cols=77 Identities=31% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
++..++|||+|||+++|+++|+++|++| +|..|.|. .++|||||+|.++++|++|++.|||..++|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999985 5689999999999999999999999999999999999865
Q ss_pred C
Q 019418 83 G 83 (341)
Q Consensus 83 ~ 83 (341)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=124.70 Aligned_cols=79 Identities=20% Similarity=0.420 Sum_probs=68.5
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
....++|||+|||+++|+++|.++|++||+|.+| +......+ ||||+|.++++|++||+ |||..|+|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3467899999999999999999999999999998 43221222 99999999999999999 999999999999998865
Q ss_pred CC
Q 019418 83 GR 84 (341)
Q Consensus 83 ~~ 84 (341)
..
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 153
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=138.40 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--------EEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
..++++|||+|||+++|+++|.++|++||.|.. |.+..++.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999999876 555568899999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 019418 75 LRVELAHGGR 84 (341)
Q Consensus 75 l~v~~~~~~~ 84 (341)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 154
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=2.7e-18 Score=133.71 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCC---EeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. +++++|||||+|.++++|++||+ |||..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999999 88999865 57889999999999999999999 99999999999999
Q ss_pred EccC
Q 019418 79 LAHG 82 (341)
Q Consensus 79 ~~~~ 82 (341)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=5e-18 Score=131.61 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=67.0
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE-----EEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~-----l~v~ 78 (341)
+..++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|.++++|++||+.|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 46789999999999999999999999999999999754 99999999999999999999999999998 7777
Q ss_pred EccCC
Q 019418 79 LAHGG 83 (341)
Q Consensus 79 ~~~~~ 83 (341)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76653
No 156
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=129.78 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|++||.| .|.|+. +++++|||||+|.++++|++||+ +|+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3577899999999999999999999999954 888865 67889999999999999999996 7999999999999998
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=123.75 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 47789999996 99999999999999999999995 56899999999999999999999999999999999999865
Q ss_pred CC
Q 019418 84 RR 85 (341)
Q Consensus 84 ~~ 85 (341)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-18 Score=131.34 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i--~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.+.++|||+|||+++|+++|+++|++||+|..+.+ ..++.++|||||+|.+.++|++||+ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999999887222 1257889999999999999999999 99999999999999998
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
+..
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 159
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=8.7e-18 Score=136.57 Aligned_cols=78 Identities=45% Similarity=0.735 Sum_probs=73.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||+++|+++|.++|++||+|..|.|+.+ ++|||||+|.+.++|++|+..|||..|+|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999765 6899999999999999999999999999999999999764
No 160
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.9e-18 Score=122.29 Aligned_cols=72 Identities=19% Similarity=0.443 Sum_probs=67.2
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
+|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++. ++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999965 478899999999999999999994 999999999999875
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=127.77 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
.++|||+|||+++|+++|+++|++| .|.+|.|+. +++++|||||+|.++++|++|| .||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999965 5788999999999999999999 5999999999999988753
No 162
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-18 Score=136.24 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=70.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEE-ee--cCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~-i~--~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||+++|+++|.++|++||.|..+. |. .++.++|||||+|.++++|++||+ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4668999999999999999999999999997733 32 378889999999999999999999 9999999999999998
Q ss_pred cC
Q 019418 81 HG 82 (341)
Q Consensus 81 ~~ 82 (341)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 163
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4.6e-18 Score=135.29 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=72.3
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCC---EeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
.+.++|||+|||+++|+++|+++|++||. |..|.|+. .++++|||||+|.++++|++||+ |||..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88999865 47889999999999999999999 99999999999999
Q ss_pred EccC
Q 019418 79 LAHG 82 (341)
Q Consensus 79 ~~~~ 82 (341)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9853
No 164
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=121.51 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=66.6
Q ss_pred CCCCE-EEeCCCCCCCCHHH----HHHHhhcc-CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 4 RSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 4 ~~~~~-l~V~nLp~~~t~~~----l~~~F~~~-G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
.|+.| |||+|||+.+++++ |.++|++| |+|.+| ++ |||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 35666 99999999999998 55899999 599998 33 99999999999999999999999999999999
Q ss_pred EEccCCC
Q 019418 78 ELAHGGR 84 (341)
Q Consensus 78 ~~~~~~~ 84 (341)
.+++...
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998654
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=124.11 Aligned_cols=79 Identities=15% Similarity=0.369 Sum_probs=70.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEE-eecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~-i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
...++|||+|||+++|+++|.++|++||+|..|. |+.+ ...+.|||+|.+.++|++|+..|||..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999995 6543 2345599999999999999999999999999999999986
Q ss_pred C
Q 019418 83 G 83 (341)
Q Consensus 83 ~ 83 (341)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 166
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.2e-18 Score=146.16 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=72.3
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC--CEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++|||+|||+++|+++|+++|++|| +|++|.|+. +++++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 678899999999999999999999999999999999999
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=138.50 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=74.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.++++|||+|||+++|+++|+++|++||+|+.|.|.. ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3578999999999999999999999999999999965 57889999999999999999999999999999999999997
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.1e-17 Score=128.48 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=69.1
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcE-EEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEccCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~-afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~~~~~ 83 (341)
-.|||+||++.+|+++|.++|++||+|.+|.|.. +.+|| |||+|.+.++|++|++.|||..|.| +.|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4677999999999999999999999999998864 23688 9999999999999999999999998 99999999865
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 3
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-18 Score=129.74 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCC---EeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
..+.++|||+|||+++|+++|+++|+.||. |..|.|+. .++++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 457889999999999999999999999998 89999965 47889999999999999999999 9999999999999
Q ss_pred EEccC
Q 019418 78 ELAHG 82 (341)
Q Consensus 78 ~~~~~ 82 (341)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=2.2e-17 Score=121.20 Aligned_cols=73 Identities=32% Similarity=0.594 Sum_probs=68.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhcc----C-------CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
..+.++|||+|||+++|+++|+++|++| | +|.+|.+..+ +|||||+|.++++|++|+ .|||..|+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4578999999999999999999999999 8 9999998743 899999999999999999 89999999
Q ss_pred CeEEEEEE
Q 019418 72 GYRLRVEL 79 (341)
Q Consensus 72 g~~l~v~~ 79 (341)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=3.1e-17 Score=133.30 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=70.5
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEccCC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~~~~~ 83 (341)
..+|||+||++.+|+++|+++|++||+|++|.|.. ..++|||||+|.+.++|++|++.|||..|.| +.|+|.+++..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35689999999999999999999999999999863 3357899999999999999999999999966 99999999875
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=132.75 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCE----eEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I----~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
..+.++|||+|||+++|+++|+++|++||+| ..|.|+. +++++|||||+|.++++|++||+. |+..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567899999999999999999999999986 5788864 688899999999999999999996 99999999999
Q ss_pred EEEccC
Q 019418 77 VELAHG 82 (341)
Q Consensus 77 v~~~~~ 82 (341)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=4.5e-17 Score=120.15 Aligned_cols=76 Identities=24% Similarity=0.462 Sum_probs=63.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCce--eCCeEEEEEEc
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~--i~g~~l~v~~~ 80 (341)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.++++|++ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 457899999999999999999999999999999999863 79999999999999984 45554 45999999998
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 174
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-16 Score=120.54 Aligned_cols=83 Identities=54% Similarity=0.968 Sum_probs=71.1
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+++.....+|||+|||.++++++|+++|.+||+|..+.|..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------------------------------------- 50 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------------------------------------- 50 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------------------------------------
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------------------------------------
Confidence 345566789999999999999999999999999999999765
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc-ccceEEEeeccC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVRVREYDS 252 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~-~~~~~~~~~~~~ 252 (341)
++|||+|.+.++|++||+.||+..+.|+. ....|.|.....
T Consensus 51 -----------------------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 51 -----------------------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp -----------------------------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred -----------------------------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 38999999999999999999999999954 334577766544
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.9e-19 Score=135.81 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=76.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeE--------EEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
..+.++|||+|||.++|+++|+++|++||+|.. |.|+. ++.++|||||+|.+.++|++||+.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 357899999999999999999999999999998 77754 5788999999999999999999999999999
Q ss_pred CeEEEEEEccCCCC
Q 019418 72 GYRLRVELAHGGRR 85 (341)
Q Consensus 72 g~~l~v~~~~~~~~ 85 (341)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987543
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.1e-17 Score=126.24 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=67.0
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcE-EEEEEcCHHHHHHHHHhcCCceeCC--eEEEEEEccCCC
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~-afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~~~~~~~ 84 (341)
.|||+||++.+|+++|.++|++||+|++|.|... .|| |||+|.+.++|++|++.|||..|.| +.|.|.++++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3679999999999999999999999999999642 386 9999999999999999999999988 699999998653
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=7.9e-18 Score=134.33 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.+.++|||+|||+++|+++|+++|++|| |+.|.|+. +++++|||||+|.++++|++|| .+|+..|.|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 67999865 5788999999999999999999 689999999999999987
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.7e-17 Score=125.68 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=72.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
.++++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++ ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3578999999999999999999999999999999966 57788999999999999999998 9999999999999987
Q ss_pred CCC
Q 019418 82 GGR 84 (341)
Q Consensus 82 ~~~ 84 (341)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=120.41 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=67.8
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~ 82 (341)
+.++++|||+|||.++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|++|+. .+..+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 457899999999999999999999999999999999754 78999999999999986533 23456899999999886
Q ss_pred CCC
Q 019418 83 GRR 85 (341)
Q Consensus 83 ~~~ 85 (341)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=6.1e-17 Score=126.82 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=69.3
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEe--EEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~--~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
.+.++|||+|||+++|+++|+++|++| .|. .|.|+. +++++|||||+|.++++|++||+ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 467899999999999999999999999 677 888865 57889999999999999999998 488999999999988
Q ss_pred ccC
Q 019418 80 AHG 82 (341)
Q Consensus 80 ~~~ 82 (341)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.1e-16 Score=125.02 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.++++|||+|| ++|+++|+++|++||+|.+|.|. .++|||||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 47899999996 79999999999999999999996 56899999999999999999999999999999999999865
Q ss_pred C
Q 019418 84 R 84 (341)
Q Consensus 84 ~ 84 (341)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.7e-17 Score=124.09 Aligned_cols=76 Identities=32% Similarity=0.496 Sum_probs=65.1
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---C---CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~---~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
..++++|||+|||+++|+++|+++|++||+|. +.++. + +.++|||||+|.++++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35789999999999999999999999999999 77754 2 6889999999999999999999884 36777777
Q ss_pred EEEcc
Q 019418 77 VELAH 81 (341)
Q Consensus 77 v~~~~ 81 (341)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66543
No 183
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.3e-16 Score=137.26 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
..++|||+|||+++|+++|.++|++||+|..|.|+. .+.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 457899999999999999999999999999999965 4557999999999999999999999999999999999998753
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.7e-16 Score=119.43 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCCCEEEeCCCCC-----CCCHHHHHHHhhccCCEeEEEeecC----CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 019418 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (341)
Q Consensus 3 ~~~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~I~~i~i~~~----~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~ 73 (341)
..++++|+|.||.. +-++++|+++|++||+|++|.|+.+ ++++|||||+|.++++|.+|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999963 2478999999999999999999753 57899999999999999999999999999999
Q ss_pred EEEEEEccC
Q 019418 74 RLRVELAHG 82 (341)
Q Consensus 74 ~l~v~~~~~ 82 (341)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=129.71 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=74.0
Q ss_pred CCCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..+.++|||+|||.++|+++|.++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34678999999999999999999999999999999964 578899999999999999999999999999999999999
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3e-16 Score=134.80 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.8
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019418 81 HGGRR 85 (341)
Q Consensus 81 ~~~~~ 85 (341)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 187
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=3.2e-16 Score=129.37 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=71.1
Q ss_pred EEEcCHHHHHHHHHhcCCceeC--CeEEEEEEccCCCCCCCCCCCCC--CCCCCCCCCCCCCCcceeeeeCCCCCCCHHH
Q 019418 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS--SYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (341)
Q Consensus 50 V~F~~~e~A~~Ai~~lng~~i~--g~~l~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 125 (341)
.+|.+.++|+.|+..|++.... |+.+.+.+........ ..... ........+......++|||+|||..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS--YERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC--ccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 7899999999999999987665 6666555532211000 00000 0000112223345568899999999999999
Q ss_pred HHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccc
Q 019418 126 LKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESY 205 (341)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~ 205 (341)
|+++|.+||.|..|.|..+.. +|.+
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~---------------------~g~~---------------------------------- 113 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRR---------------------TGFS---------------------------------- 113 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTT---------------------TSSE----------------------------------
T ss_pred HHHHhhcCCCEEEEEEEecCC---------------------CCcE----------------------------------
Confidence 999999999999999998765 2333
Q ss_pred cccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 206 HNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 206 ~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|..||..|||..|.| ..|.|.....
T Consensus 114 -----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~ 151 (165)
T 1rk8_A 114 -----KGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFV 151 (165)
T ss_dssp -----EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEE
T ss_pred -----eeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecC
Confidence 5699999999999999999999999999 4566655433
No 188
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.1e-16 Score=121.67 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=68.8
Q ss_pred CEEEeCCC----CCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcC----HHH----HHHHHH--hcCCce
Q 019418 7 RTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFED----YRD----AEDAIR--GRDGYN 69 (341)
Q Consensus 7 ~~l~V~nL----p~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~----~e~----A~~Ai~--~lng~~ 69 (341)
++|||+|| |+.+++++|.++|+.||+|.+|.++. ||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 99999999999999999999999965 78899999999996 444 888988 789999
Q ss_pred eCCeEEEEEEccCC
Q 019418 70 FDGYRLRVELAHGG 83 (341)
Q Consensus 70 i~g~~l~v~~~~~~ 83 (341)
|+|+.|.|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987653
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=4e-16 Score=129.18 Aligned_cols=76 Identities=29% Similarity=0.541 Sum_probs=71.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
..++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 5777999999999999999999999999999999999987
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=6.5e-16 Score=130.89 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~ 80 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 5777999999999999999999999999999999999999
Q ss_pred cCCC
Q 019418 81 HGGR 84 (341)
Q Consensus 81 ~~~~ 84 (341)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=3.5e-16 Score=135.48 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=71.1
Q ss_pred CCCCEEEeCCCCCCC---------CHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCcee----
Q 019418 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i---- 70 (341)
.+.++|||+||+..+ |+++|.++|++||+|++|.|+. ++|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 468999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCeEEEEEEccCCC
Q 019418 71 --------DGYRLRVELAHGGR 84 (341)
Q Consensus 71 --------~g~~l~v~~~~~~~ 84 (341)
.|+.|.|.||...+
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.8e-16 Score=128.63 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.7
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++ +||..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999965 57889999999999999999998 89999999999999997
Q ss_pred CC
Q 019418 82 GG 83 (341)
Q Consensus 82 ~~ 83 (341)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=5.4e-16 Score=128.86 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=72.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.+.++|||+|||.++|+++|.++|++||+|..+ ..++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999887 567889999999999999999999999999999999999999753
No 194
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=7.9e-16 Score=122.56 Aligned_cols=122 Identities=14% Similarity=0.045 Sum_probs=72.6
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHH
Q 019418 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (341)
Q Consensus 46 g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 125 (341)
-++|++|.++..|..|++.++|....|+.- +.+. ..++......+|||+|||.++++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------------~~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------------RPPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp -------------------------------CCSC--------------------CSCSSGGGCCCEEEECCCSSCHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------------CCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 367889999999999999988876555431 1110 1124445568999999999999999
Q ss_pred HHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccc
Q 019418 126 LKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESY 205 (341)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~ 205 (341)
|+++|.+||.|..+.|..+.. ++..
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~---------------------~g~~---------------------------------- 88 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRY---------------------TKES---------------------------------- 88 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSS---------------------SSSC----------------------------------
T ss_pred HHHHHHhcCCEEEEEEEecCC---------------------CCcc----------------------------------
Confidence 999999999999999987754 2222
Q ss_pred cccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 206 HNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 206 ~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|.....
T Consensus 89 -----~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~ 126 (135)
T 2lea_A 89 -----RGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARY 126 (135)
T ss_dssp -----CSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCC
T ss_pred -----ceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCC
Confidence 5699999999999999999999999999 4566665544
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=117.04 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=71.0
Q ss_pred CCCCCEEEeCCCCCCCC-----------HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 3 SRSSRTLYVGNLPGDTR-----------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
..++++|+|.||....+ +++|+++|++||+|.+|.| .+..++|||||+|.+.++|++|++.|||..|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999954432 6899999999999999977 44568999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 019418 72 GYRLRVELAHGGR 84 (341)
Q Consensus 72 g~~l~v~~~~~~~ 84 (341)
|++|.|.++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999997643
No 196
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.1e-15 Score=129.20 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=71.5
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+.++|||+|||+++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 577899999999999999999986 8999999999999998
Q ss_pred CCCC
Q 019418 82 GGRR 85 (341)
Q Consensus 82 ~~~~ 85 (341)
+...
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7653
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=8.1e-16 Score=127.51 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeC---CeEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~---g~~l~v~~ 79 (341)
+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..+. +++|.|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999965 5777999999999999999999999998776 49999998
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 198
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.1e-15 Score=129.18 Aligned_cols=77 Identities=16% Similarity=0.389 Sum_probs=70.2
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~ 83 (341)
.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++.+ +..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999965 5778999999999999999999865 56999999999998753
No 199
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.3e-15 Score=125.44 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC--eEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g--~~l~v~ 78 (341)
.+.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 56778999999999999999999999999988 999998
Q ss_pred Ec
Q 019418 79 LA 80 (341)
Q Consensus 79 ~~ 80 (341)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 200
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=112.99 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=68.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
+.+|||+|||.++++++|+++|.+||+|..+.|..+.. +|.+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------------tg~~----------------- 60 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV---------------------AGHS----------------- 60 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---------------------SCCE-----------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC---------------------CCcc-----------------
Confidence 47899999999999999999999999999999998765 3333
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.|...
T Consensus 61 ----------------------kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V~~A 96 (99)
T 4fxv_A 61 ----------------------LGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKVSYA 96 (99)
T ss_dssp ----------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred ----------------------cccEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEe
Confidence 5699999999999999999999999999 55666554
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=2.4e-15 Score=115.21 Aligned_cols=78 Identities=33% Similarity=0.528 Sum_probs=68.1
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
...+|||+|||.++++++|+++|.+|| +|..+.|.....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~---------------------------------------- 66 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDF---------------------------------------- 66 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSS----------------------------------------
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCC----------------------------------------
Confidence 447999999999999999999999999 999998864333
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+|+|||+|.+.++|++||+.|||..++| ..|+|......
T Consensus 67 ------------------------rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~a~~~ 105 (111)
T 2jvr_A 67 ------------------------DGTGALEFPSEEILVEALERLNNIEFRG----SVITVERDDNP 105 (111)
T ss_dssp ------------------------SCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEESCC-
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEECCCC
Confidence 5799999999999999999999999999 66787776543
No 202
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=2.4e-15 Score=123.54 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=69.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE--EEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--LRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~--l~v~~ 79 (341)
+.++|||+|||.++|+++|.++|++||+|..|.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999964 5677999999999999999999999999999965 88877
Q ss_pred c
Q 019418 80 A 80 (341)
Q Consensus 80 ~ 80 (341)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 203
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=6.9e-15 Score=115.63 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||..+++++|+++|.+||.|..+.|..+.. ++.+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------- 63 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---------------------TGYL------------- 63 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---------------------TSSB-------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCcc-------------
Confidence 344567999999999999999999999999999999988754 2332
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++|++.|||..+.| ..|.|....
T Consensus 64 --------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~ 100 (126)
T 3ex7_B 64 --------------------------KGYTLVEYETYKEAQAAMEGLNGQDLMG----QPISVDWCF 100 (126)
T ss_dssp --------------------------CSCEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEESE
T ss_pred --------------------------ceEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEEEEec
Confidence 5699999999999999999999999999 455655543
No 204
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=111.16 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|..+.. |..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~--------------- 47 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----------------------SKS--------------- 47 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----------------------TTC---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----------------------CCc---------------
Confidence 3447999999999999999999999999999999988754 222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.|......
T Consensus 48 ------------------------~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 86 (116)
T 2fy1_A 48 ------------------------RGFAFITFENPADAKNAAKDMNGKSLHG----KAIKVEQAKKP 86 (116)
T ss_dssp ------------------------CCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEEEECCCS
T ss_pred ------------------------ccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEECCCC
Confidence 5699999999999999999999999999 45666665443
No 205
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=108.43 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
++......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~----------- 54 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH---------------------TKAP----------- 54 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS---------------------SCSB-----------
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------------CCCC-----------
Confidence 34556668999999999999999999999999999999988755 2222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|......
T Consensus 55 ----------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~~ 93 (103)
T 2dnm_A 55 ----------------------------RGFAFVRFHDRRDAQDAEAAMDGAELDG----RELRVQVARYG 93 (103)
T ss_dssp ----------------------------CSCEEEEESSSSHHHHHHHHHSSCCBTT----BCCEEEECSSC
T ss_pred ----------------------------CeEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEECCcC
Confidence 5699999999999999999999999999 55676666544
No 206
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=7.7e-15 Score=111.40 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=69.9
Q ss_pred CCCCCEEEeCCC--CCCCC--------HHHHHHHhhccCCEeEEEeecC-----CCCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 3 SRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 3 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~I~~i~i~~~-----~~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
..|++.|.|.|+ |..+. +++|+++|++||+|++|.|+.+ +.++|||||+|.++++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 458999999999 43443 4789999999999999999763 35789999999999999999999999
Q ss_pred ceeCCeEEEEEEccC
Q 019418 68 YNFDGYRLRVELAHG 82 (341)
Q Consensus 68 ~~i~g~~l~v~~~~~ 82 (341)
..|+|+.|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 207
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=7.8e-15 Score=131.44 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~ 81 (341)
++++|||+|||.++|+++|+++|++||.|..|.|.... +|||||+|.+.++|.+|++.|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997432 689999999999999999999999999 9999999986
No 208
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=113.15 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=70.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+.|+.+.. +|++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~---------------------tg~~----------------- 47 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPR---------------------TRKH----------------- 47 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---------------------TCCE-----------------
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCC---------------------CCce-----------------
Confidence 46999999999999999999999999999999998876 3444
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++||+.|||..+.| ..|.|.....
T Consensus 48 ----------------------rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V~~a~~ 85 (110)
T 3s8s_A 48 ----------------------LGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHAQLDIK 85 (110)
T ss_dssp ----------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECST
T ss_pred ----------------------eeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 5699999999999999999999999999 5677665543
No 209
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=4.9e-15 Score=126.53 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCE--eEEEeecC-CCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe----EEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLRV 77 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I--~~i~i~~~-~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~----~l~v 77 (341)
++++|||+|||+++|+++|+++|++||.| ..|.|..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 56799999999999999999999999999 89988653 45579999999999999999999999999886 6777
Q ss_pred EEc
Q 019418 78 ELA 80 (341)
Q Consensus 78 ~~~ 80 (341)
+++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 664
No 210
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.5e-14 Score=105.32 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=73.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------------------------------------- 52 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT------------------------------------- 52 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------------------------
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------------------------
Confidence 3445668999999999999999999999999999999988755
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
.++++|||+|.+.++|++|+..||+..+.| ..+.|.......
T Consensus 53 -------------------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~~ 94 (103)
T 2cqi_A 53 -------------------------SNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVKVNWATTPS 94 (103)
T ss_dssp -------------------------SSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEECCCTT
T ss_pred -------------------------CCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEEEEECCCCc
Confidence 125799999999999999999999999999 567777665543
No 211
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=7.2e-15 Score=124.63 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEccC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~~ 82 (341)
++++|||+|||..+|+++|.++|++|| +|..|.|..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.++++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 588999999999999999999999999 9999999643 3799999999999999999999999999 99999999875
No 212
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=1.9e-14 Score=111.31 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=67.8
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.+|||+|||.++++++|+++|.+||.|..|.|..+..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~------------------------------------------- 42 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN------------------------------------------- 42 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------------------------------
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------------------------------
Confidence 5899999999999999999999999999999988754
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
.++++|||+|.+.++|++||+.|||..++| ..|.|.....
T Consensus 43 -------------------~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~a~~ 82 (115)
T 4f25_A 43 -------------------GSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRFKS 82 (115)
T ss_dssp -------------------EEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEESSC
T ss_pred -------------------CCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCC
Confidence 125799999999999999999999999999 5666665543
No 213
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.2e-14 Score=106.28 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~------------- 53 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE---------------------TQRS------------- 53 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSS---------------------SCSC-------------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------------CCCc-------------
Confidence 344558999999999999999999999999999999988754 1222
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|++.||+..++| ..+.|.....
T Consensus 54 --------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~ 91 (102)
T 1x5s_A 54 --------------------------RGFGFVTFENIDDAKDAMMAMNGKSVDG----RQIRVDQAGK 91 (102)
T ss_dssp --------------------------CSEEEEECSSHHHHHHHHHHHTTCCTTS----CCCEEEEEEC
T ss_pred --------------------------ccEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 5699999999999999999999999999 4566655543
No 214
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.6e-14 Score=125.58 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC-CeEEEEEEccC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~-g~~l~v~~~~~ 82 (341)
++++|||+|||.++|+++|.++|++|| +|..|.|... .+|||||+|.+.++|.+|++.|||..|. |+.|.|.++++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 478999999999999999999999999 9999999542 4799999999999999999999999999 99999999975
No 215
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=107.53 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=72.9
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~------------- 56 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT---------------------TGQS------------- 56 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS---------------------SCSE-------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC---------------------CCce-------------
Confidence 345568999999999999999999999999999999998754 2222
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|+..||+..+.| ..|.|.......
T Consensus 57 --------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~~ 96 (103)
T 2cq0_A 57 --------------------------KGFAFISFHRREDAARAIAGVSGFGYDH----LILNVEWAKPST 96 (103)
T ss_dssp --------------------------EEEEEEEESSHHHHHHHHHHTTTCEETT----EECEEEESSCCC
T ss_pred --------------------------eeEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEEECCCCC
Confidence 5699999999999999999999999999 567776665443
No 216
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-13 Score=105.64 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+..
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~------------------------------------- 59 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------------------------- 59 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-------------------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------------------------------
Confidence 4445668999999999999999999999999999999865432
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
.+++|||+|.+.++|++||+.||+..++| ..|.|......+
T Consensus 60 --------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~~~ 100 (109)
T 1x4a_A 60 --------------------------GPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLRVEFPRSGR 100 (109)
T ss_dssp --------------------------SSCCEEEEESCHHHHHHHHHHHTTCEETT----EECEEECCCCCC
T ss_pred --------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcccCC
Confidence 25799999999999999999999999999 567776665443
No 217
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=1.5e-13 Score=106.14 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+.. ++..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------ 56 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA---------------------TGKS------------ 56 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------------TCCE------------
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------------CCCc------------
Confidence 4445668999999999999999999999999999999998754 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.|||..+.| ..|.|......
T Consensus 57 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 95 (115)
T 2dgo_A 57 ---------------------------KGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIRTNWATRK 95 (115)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHHHHTTTCEETT----EECEEEESSCC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEccCC
Confidence 4699999999999999999999999999 56777766544
No 218
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4e-14 Score=106.89 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=72.4
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~-------------- 53 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------------TEKH-------------- 53 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSS---------------------SCCC--------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCC---------------------CCCc--------------
Confidence 34568999999999999999999999999999999988754 2222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|.......
T Consensus 54 -------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~~~ 93 (102)
T 2cqb_A 54 -------------------------RGFAFVEFELAEDAAAAIDNMNESELFG----RTIRVNLAKPMR 93 (102)
T ss_dssp -------------------------SSEEEECCSSHHHHHHHHHHHTTEEETT----EEEEEEECCCCC
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEeCCCCC
Confidence 5799999999999999999999999999 667777665543
No 219
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-13 Score=104.55 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~------------------------------------- 52 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER------------------------------------- 52 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------------------------
Confidence 4445568999999999999999999999999999999988754
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
..+++|||+|.+.++|++|+..||+..++| ..|.|......
T Consensus 53 -------------------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 93 (103)
T 2cq3_A 53 -------------------------GSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEVNNATAR 93 (103)
T ss_dssp -------------------------TTCCEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEECCSS
T ss_pred -------------------------CCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEcccC
Confidence 125799999999999999999999999999 56777665544
No 220
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=6.7e-14 Score=106.45 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=71.2
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------ 54 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF---------------------TGMH------------ 54 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSS---------------------SCSC------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---------------------CCCc------------
Confidence 3445568999999999999999999999999999999988755 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccc---ccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~---~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|++.||+..+ .| ..+.|......
T Consensus 55 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g----~~l~v~~a~~~ 96 (106)
T 2dgp_A 55 ---------------------------KGCAFLTYCERESALKAQSALHEQKTLPGMN----RPIQVKPADSE 96 (106)
T ss_dssp ---------------------------CSEEEEEESSHHHHHHHHHHHTTTCCCTTCS----SCCEEEECCCC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHhcCCcccCCCC----ceEEEEECCcc
Confidence 57999999999999999999999987 66 45666655443
No 221
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.5e-14 Score=104.51 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------ 51 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE---------------------KQRP------------ 51 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT---------------------TCSC------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------------CCCC------------
Confidence 3445568999999999999999999999999999999988754 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|++ ||+..+.| ..+.|.......
T Consensus 52 ---------------------------~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~l~V~~a~~~~ 90 (99)
T 2dgs_A 52 ---------------------------RGFGFITFEDEQSVDQAVN-MHFHDIMG----KKVEVKRAEPRD 90 (99)
T ss_dssp ---------------------------CSEEEEEESSHHHHHHHHH-HCCCBSSS----CBCEEEECCCCC
T ss_pred ---------------------------CceEEEEECCHHHHHHHHH-hCCCEECC----eEEEEEECCCCc
Confidence 5799999999999999998 99999999 556666655443
No 222
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=103.80 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=72.0
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~--------------- 49 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---------------------TKKP--------------- 49 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTT---------------------TCCC---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---------------------CCCc---------------
Confidence 3457999999999999999999999999999999988764 2222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|.......
T Consensus 50 ------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~~ 89 (99)
T 1whw_A 50 ------------------------KGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLHVLPSTIKK 89 (99)
T ss_dssp ------------------------CSEEEEEESSHHHHHHHHHHTTTEESSS----CEEEEEECCCCS
T ss_pred ------------------------CeEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEcCCCc
Confidence 5699999999999999999999999999 567777665554
No 223
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1e-13 Score=104.82 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+ . +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----------------------g~------------- 53 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----------------------GR------------- 53 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----------------------SS-------------
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----------------------CC-------------
Confidence 34456689999999999999999999999999999999877 3 11
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
.+++|||+|.+.++|++|+..||+..+.| ..+.|......
T Consensus 54 --------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~~ 93 (103)
T 2d9p_A 54 --------------------------SKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLYVALAQRK 93 (103)
T ss_dssp --------------------------EEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEECSSC
T ss_pred --------------------------cCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEEeccc
Confidence 15699999999999999999999999999 55676665544
No 224
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.7e-14 Score=103.27 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. ++..
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------------~~~~------------ 56 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---------------------SRRS------------ 56 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS---------------------SSSE------------
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---------------------CCCc------------
Confidence 4445568999999999999999999999999999999998765 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|...
T Consensus 57 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 92 (95)
T 2cqc_A 57 ---------------------------RGFAFVYFENVDDAKEAKERANGMELDG----RRIRVSGP 92 (95)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ---------------------------ccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEec
Confidence 4699999999999999999999999999 55666554
No 225
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=102.99 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=70.7
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+|||.++++++|+++|.+||.|..+.+..+.. ++.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------------~~~~---------------- 46 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSD---------------------TGRS---------------- 46 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSS---------------------SCCC----------------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCC---------------------CCce----------------
Confidence 347999999999999999999999999999999998765 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|++.||+..++| ..+.|.....+.
T Consensus 47 -----------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~~ 86 (95)
T 2dnz_A 47 -----------------------KGYGFITFSDSECARRALEQLNGFELAG----RPMRVGHVTERL 86 (95)
T ss_dssp -----------------------CSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEEEESSCCC
T ss_pred -----------------------eeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEEEccccc
Confidence 5699999999999999999999999999 556766665443
No 226
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=7.2e-14 Score=107.96 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------- 66 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ---------------------TNLS------------- 66 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS---------------------SCSE-------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC---------------------CCCc-------------
Confidence 334557999999999999999999999999999999998764 2222
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|.......
T Consensus 67 --------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~~ 106 (115)
T 2cpz_A 67 --------------------------KCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRLKVQLKRSKN 106 (115)
T ss_dssp --------------------------EEEEEEECSSHHHHHHHHHHHTTCEETT----EECEEECCCCSC
T ss_pred --------------------------CccEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEcCCCC
Confidence 5699999999999999999999999999 567777665443
No 227
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-13 Score=103.13 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCCcceeeeeCCCCCCCHHHHH----HHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccc
Q 019418 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLY 181 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~ 181 (341)
.....+|||+|||.++++++|+ ++|.+||.|..+.|..+..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~----------------------------------- 50 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD----------------------------------- 50 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-----------------------------------
Confidence 3455799999999999999999 9999999999999998765
Q ss_pred cceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 182 RFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 182 ~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
. +++|||+|.+.++|++||+.|||..++| ..++|......
T Consensus 51 ---------------------------~-rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~l~V~~a~~~ 90 (96)
T 2dgx_A 51 ---------------------------Y-QLKAVVQMENLQDAIGAVNSLHRYKIGS----KKILVSLATGA 90 (96)
T ss_dssp ---------------------------T-TCCEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEECCCS
T ss_pred ---------------------------C-CeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEcCCC
Confidence 0 3599999999999999999999999999 66777766443
No 228
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-13 Score=104.03 Aligned_cols=86 Identities=28% Similarity=0.355 Sum_probs=72.7
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------ 56 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV---------------------TGQH------------ 56 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---------------------SCSB------------
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCcC------------
Confidence 3445568999999999999999999999999999999988764 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+..||+..+.| ..+.|......
T Consensus 57 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 95 (105)
T 1x5u_A 57 ---------------------------QGYGFVEFLSEEDADYAIKIMDMIKLYG----KPIRVNKASAH 95 (105)
T ss_dssp ---------------------------CSCEEEEESSHHHHHHHHHHSSSCBCSS----CBCEEEETTTT
T ss_pred ---------------------------CcEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEECCCC
Confidence 5699999999999999999999999999 55777665443
No 229
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-13 Score=104.80 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=71.0
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. +..
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----------------------g~~------------ 55 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----------------------GKS------------ 55 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----------------------CSE------------
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----------------------CCe------------
Confidence 3445568999999999999999999999999999999988754 222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+..||+..+.| ..+.|.....
T Consensus 56 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 93 (114)
T 2do0_A 56 ---------------------------RGIGTVTFEQSIEAVQAISMFNGQLLFD----RPMHVKMDER 93 (114)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECSC
T ss_pred ---------------------------eeEEEEEECCHHHHHHHHHHhCCCEeCC----CEEEEEEccc
Confidence 4699999999999999999999999999 5566665543
No 230
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.7e-14 Score=130.13 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCCCCCEEEeCC--CCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC---Ce--E
Q 019418 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (341)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~---g~--~ 74 (341)
++.++.+|||+| |+..+|+++|+++|++||+|.+|.|.. .+|||||+|.+.++|++||+.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 467999999999 578999999999999999999998863 5899999999999999999999999884 44 6
Q ss_pred EEEEEcc
Q 019418 75 LRVELAH 81 (341)
Q Consensus 75 l~v~~~~ 81 (341)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 231
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=4.6e-15 Score=112.46 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=60.5
Q ss_pred eCCCCCCCCHHHHHHHh------------hccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 11 VGNLPGDTRMREVEDLF------------YKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 11 V~nLp~~~t~~~l~~~F------------~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
+.|||..+|+++|.++| ++||+|.+|.|+. +++++|||||+|.++++|++|++.|||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45556667777777666 9999999999976 467899999999999999999999999999999999
Q ss_pred EEEc
Q 019418 77 VELA 80 (341)
Q Consensus 77 v~~~ 80 (341)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 232
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-13 Score=105.36 Aligned_cols=86 Identities=9% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..|.|..+.. ++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------ 56 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD---------------------TEHS------------ 56 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS---------------------SCCB------------
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCCC------------
Confidence 4445568999999999999999999999999999999998755 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcC------ccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLD------RSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~------g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|+..|| +..++| ..+.|.....+
T Consensus 57 ---------------------------~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g----~~l~v~~a~~~ 101 (111)
T 1x4h_A 57 ---------------------------KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG----RQLKVDLAVTR 101 (111)
T ss_dssp ---------------------------CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS----CEEEEECCCCC
T ss_pred ---------------------------ccEEEEEECCHHHHHHHHHHhccccccCCcEEcC----EEEEEEECCCC
Confidence 5699999999999999999999 999999 56777766544
No 233
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=104.46 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeC-CchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-RGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+ .. ++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---------------------~~~------------ 56 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG---------------------TGA------------ 56 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSS---------------------SCS------------
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCC---------------------CCC------------
Confidence 44556689999999999999999999999999999999887 33 122
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc-CccccccccccceEEEeeccCCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l-~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
.+++|||+|.+.++|++|+..| |+..+.| ..+.|.......
T Consensus 57 ---------------------------~~g~afV~f~~~~~a~~A~~~l~~~~~~~g----~~l~v~~a~~~~ 98 (107)
T 2cph_A 57 ---------------------------HRGFGFVDFITKQDAKKAFNALCHSTHLYG----RRLVLEWADSEV 98 (107)
T ss_dssp ---------------------------SCSEEEEEESSHHHHHHHHHHHHTCCBSSS----CBCEEEECCCCC
T ss_pred ---------------------------cCceEEEEECCHHHHHHHHHHhccCCeECC----CEEEEEeCCCCC
Confidence 2579999999999999999999 9999999 456666655443
No 234
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.2e-13 Score=104.51 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.+.....+|||+|||.++++++|+++|.+|| |..+.|..+.. ++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~---------------------~g~~------------ 55 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKD---------------------TDKF------------ 55 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSS---------------------SCSE------------
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCC---------------------CCcc------------
Confidence 4455668999999999999999999999996 99999998865 2333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|+ .||+..+.| ..|.|.......
T Consensus 56 ---------------------------~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~a~~~~ 94 (103)
T 2dng_A 56 ---------------------------KGFCYVEFDEVDSLKEAL-TYDGALLGD----RSLRVDIAEGRK 94 (103)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHG-GGTTCEETT----EECEEEECCCCC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHH-hhCCCeECC----eEEEEEEecCCC
Confidence 569999999999999999 999999999 567776665443
No 235
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=105.17 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=67.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhC-CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
.+|||+|||.++++++|+++|.+|| +|..+.|+.+.. +|.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~---------------------t~~~----------------- 43 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKS---------------------SGQS----------------- 43 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSS---------------------SCCC-----------------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCC---------------------CCCc-----------------
Confidence 5899999999999999999999999 899999988765 3333
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc-CccccccccccceEEEeeccC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l-~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+|+|||+|.+.++|++|++.+ ++..++| ..+.|.....
T Consensus 44 ----------------------rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V~~a~~ 82 (91)
T 2lxi_A 44 ----------------------RGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSMHYSDP 82 (91)
T ss_dssp ----------------------SSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEEECCCS
T ss_pred ----------------------CceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEEEEcCC
Confidence 679999999999999999988 5667999 5677766544
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.9e-14 Score=105.25 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=65.5
Q ss_pred CCcceeeeeCCCC-CCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 107 ~~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.+..+|||+|||. ++++++|+++|.+||.|..+.|+.+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------------------------------------- 52 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------------------------------------- 52 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----------------------------------------
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----------------------------------------
Confidence 3557999999999 99999999999999999999997654
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc--cccccccceEEEeeccC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVREYDS 252 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~--~~g~~~~~~~~~~~~~~ 252 (341)
++|||+|++.++|..||+.||+.. +.| ..|.|.....
T Consensus 53 --------------------------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V~~a~~ 91 (102)
T 1x4d_A 53 --------------------------NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRVHLSQK 91 (102)
T ss_dssp --------------------------SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEEEEECC
T ss_pred --------------------------CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEEEECCC
Confidence 499999999999999999998754 888 5566665543
No 237
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=104.66 Aligned_cols=85 Identities=18% Similarity=0.355 Sum_probs=71.4
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhh-hhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREA-GRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a-g~~~g~~~~~~~~~ 182 (341)
.+..+..+|||+|||.++++++|+++|.+|| |..+.|..+.. + |..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~---------------------~~g~~----------- 56 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS---------------------NPERL----------- 56 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS---------------------CTTSB-----------
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC---------------------CCCCc-----------
Confidence 4445668999999999999999999999999 99999988765 1 222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++|| .||+..+.| ..+.|.....+.
T Consensus 57 ----------------------------~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~a~~~~ 95 (104)
T 1wi8_A 57 ----------------------------KGFGYAEFEDLDSLLSAL-SLNEESLGN----KRIRVDVADQAQ 95 (104)
T ss_dssp ----------------------------CSCEEEEESSHHHHHHHH-GGGTCEETT----EECEEEECCCCC
T ss_pred ----------------------------CeEEEEEECCHHHHHHHH-hcCCCEeCC----cEEEEEEccCCC
Confidence 569999999999999999 999999999 567776665543
No 238
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=7.9e-14 Score=101.99 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=67.7
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
+..+|||+|||.++++++|+++|.+||.|..+.+..+.. +|..
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~---------------- 47 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA---------------------TGKS---------------- 47 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------------TCCE----------------
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC---------------------CCcc----------------
Confidence 447999999999999999999999999999999998754 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|+..|||..++| ..+.+...
T Consensus 48 -----------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a 83 (87)
T 3bs9_A 48 -----------------------KGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIRTNWA 83 (87)
T ss_dssp -----------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEE
T ss_pred -----------------------ceEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEec
Confidence 5699999999999999999999999999 45555544
No 239
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-13 Score=102.13 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.|..+.. |..
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~------------- 57 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----------------------GKP------------- 57 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----------------------SCE-------------
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----------------------CCE-------------
Confidence 344567999999999999999999999999999999988754 222
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|.....+
T Consensus 58 --------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 96 (100)
T 2do4_A 58 --------------------------KGLAYVEYENESQASQAVMKMDGMTIKE----NIIKVAISNSG 96 (100)
T ss_dssp --------------------------EEEEEEEESSHHHHHHHHHHHTTEESSS----CEEEEEECCCC
T ss_pred --------------------------EeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEECCCC
Confidence 4699999999999999999999999999 56777666543
No 240
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=103.01 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=65.0
Q ss_pred CCCEEEeCCCC-------CCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEE
Q 019418 5 SSRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (341)
Q Consensus 5 ~~~~l~V~nLp-------~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v 77 (341)
...+|.|.-.. .++|+++|+++|++||+|.+|.|+ +.++|||||+|.+.++|+.||+.+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 34567776554 468999999999999999999998 57899999999999999999997555 68999999
Q ss_pred EEccCCC
Q 019418 78 ELAHGGR 84 (341)
Q Consensus 78 ~~~~~~~ 84 (341)
.++....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9988654
No 241
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=102.22 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.+..+.. ++..
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---------------------~~~~------------ 57 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKD---------------------TRKS------------ 57 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSS---------------------SCCC------------
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------------------CCCc------------
Confidence 4445668999999999999999999999999999999988765 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|..
T Consensus 58 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 92 (94)
T 2e5h_A 58 ---------------------------KGVAFILFLDKDSAQNCTRAINNKQLFG----RVIKASI 92 (94)
T ss_dssp ---------------------------TTCEEEEESCHHHHHHHHHHTTTEEETT----EEEEEEE
T ss_pred ---------------------------ccEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEEe
Confidence 5699999999999999999999999999 4565543
No 242
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=103.54 Aligned_cols=86 Identities=9% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCee-EEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
....+|||+|||.++++++|+++|.+||.|. .+.|..+.. ++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~---------------------~g~~-------------- 51 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL---------------------TGIP-------------- 51 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS---------------------SCCE--------------
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC---------------------CCCc--------------
Confidence 3457999999999999999999999999999 999998864 2222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+..|||..+.|+.....+++.....
T Consensus 52 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 52 -------------------------AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp -------------------------EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred -------------------------CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 469999999999999999999999999965333366665543
No 243
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=1.1e-13 Score=100.77 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=67.5
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+..+|||+|||.++++++|+++|.+||.|..+.+..+.. ++..
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~--------------- 48 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------------TEKH--------------- 48 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETT---------------------TTEE---------------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCC---------------------CCcc---------------
Confidence 3457999999999999999999999999999999987754 2333
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
+++|||+|.+.++|..|++.|||..++| ..+++..
T Consensus 49 ------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 83 (85)
T 3mdf_A 49 ------------------------RGFAFVEFELAEDAAAAIDNMNESELFG----RTIRVNL 83 (85)
T ss_dssp ------------------------CSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred ------------------------ccEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 5699999999999999999999999999 4455543
No 244
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=104.78 Aligned_cols=80 Identities=9% Similarity=0.068 Sum_probs=67.0
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCC--eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.-.+|||+|||+.+|+++|+++|++||. |..|.+..+.. +|.+
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~---------------------tg~s-------------- 52 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQ---------------------TQQN-------------- 52 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSS---------------------SSSC--------------
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCC---------------------CCCC--------------
Confidence 3369999999999999999999999995 67899888866 3444
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc----cccccccceEEEeecc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE----FRNAFSRSYVRVREYD 251 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~----~~g~~~~~~~~~~~~~ 251 (341)
+|+|||+|.+.++|++|++.|||.. ++| ..+.|...+
T Consensus 53 -------------------------rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G----r~i~V~~Ak 93 (95)
T 2lkz_A 53 -------------------------RGFAFVQLSSAMDASQLLQILQSLHPPLKIDG----KTIGVDFAK 93 (95)
T ss_dssp -------------------------SSEEEEECSSSHHHHHHHHHHHSSSSCEEETT----EEEEEEECC
T ss_pred -------------------------ceEeEEEECCHHHHHHHHHHhcCCCCCceECC----EEEEEEEcc
Confidence 5799999999999999999999974 788 556665543
No 245
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=4.2e-14 Score=104.30 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=65.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhC--CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
.+|||+|||.++++++|+++|.+|| .|..+.+..+.. +|++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~---------------------~g~~---------------- 44 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---------------------NGQS---------------- 44 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT---------------------TCCE----------------
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC---------------------CCcc----------------
Confidence 5799999999999999999999999 999999998865 3333
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+|+|||+|.+.++|++|++.|||..++| ..+.|.....
T Consensus 45 -----------------------kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V~~~~~ 82 (90)
T 3p5t_L 45 -----------------------KGFALVGVGSEASSKKLMDLLPKRELHG----QNPVVTPSNK 82 (90)
T ss_dssp -----------------------EEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEECCC--
T ss_pred -----------------------CcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEEEECCC
Confidence 5699999999999999999999999999 5566655443
No 246
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-13 Score=101.61 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|. +.+..+..
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~------------------------------------- 55 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGP------------------------------------- 55 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETT-------------------------------------
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCC-------------------------------------
Confidence 3445568999999999999999999999999986 56655443
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|++.|||..++| ..+.|.....
T Consensus 56 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~ 93 (97)
T 2e5j_A 56 ---------------------------RRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVALARQ 93 (97)
T ss_dssp ---------------------------TTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEEECCC
T ss_pred ---------------------------CcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEcCC
Confidence 6799999999999999999999999999 4566665544
No 247
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=3.8e-13 Score=102.05 Aligned_cols=85 Identities=21% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||..+++++|+++|.+||.|..+.|..+.. |.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~--------------- 55 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----------------------GSS--------------- 55 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----------------------SCE---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----------------------CCc---------------
Confidence 3468999999999999999999999999999999988754 222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++||+.|||..+.|.. ...+.|......
T Consensus 56 ------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V~~a~~~ 97 (105)
T 2dnh_A 56 ------------------------KGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVVKFADTD 97 (105)
T ss_dssp ------------------------EEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEEEESCSS
T ss_pred ------------------------CcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEEEECccC
Confidence 469999999999999999999999988721 123555555443
No 248
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=104.22 Aligned_cols=74 Identities=7% Similarity=0.081 Sum_probs=63.5
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
+..+|||+|||.++++++|+++|.+||+|..+.|..+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------------------------------------------- 51 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------------------------------------------- 51 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------------------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------------------------------------------
Confidence 3479999999999999999999999999999999865
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCc--cccccccccceEEEeecc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g--~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|..||+.|++ ..+.| ..+.|....
T Consensus 52 -----------------------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~~A~ 90 (105)
T 1sjq_A 52 -----------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQFSN 90 (105)
T ss_dssp -----------------------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBCCCS
T ss_pred -----------------------CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEEEcC
Confidence 35999999999999999998864 78888 445554443
No 249
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=102.49 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=69.4
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+.. +..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~------------ 56 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----------------------GKP------------ 56 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----------------------SCE------------
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----------------------CCC------------
Confidence 4445668999999999999999999999999999999988754 222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|...
T Consensus 57 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a 92 (95)
T 2ywk_A 57 ---------------------------KSFGFVCFKHPESVSYAIALLNGIRLYG----RPINVSGP 92 (95)
T ss_dssp ---------------------------EEEEEEEESSTHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----CEEEEEEc
Confidence 5699999999999999999999999999 45665543
No 250
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=102.69 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE--------EEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCC
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGG 175 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~ 175 (341)
.+.....+|||+|||.++++++|+++|.+||.|.. +.+..+.. +|.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------------~g~~---- 62 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---------------------TGKL---- 62 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT---------------------TCSE----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC---------------------CCCe----
Confidence 44555689999999999999999999999999999 89988755 2333
Q ss_pred CccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEe
Q 019418 176 MFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 248 (341)
Q Consensus 176 ~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~ 248 (341)
+++|||+|.+.++|++|++.|||..+.|+ .++|.
T Consensus 63 -----------------------------------~G~afV~f~~~~~a~~Ai~~l~g~~~~g~----~l~V~ 96 (99)
T 2la6_A 63 -----------------------------------KGEATVSFDDPPSAKAAIDWFDGKEFSGN----PIKVS 96 (99)
T ss_dssp -----------------------------------EEEEEEEBSSHHHHHHHHHHHTTCBSSSS----BCEEE
T ss_pred -----------------------------------eeEEEEEECCHHHHHHHHHHhCCCEeCCc----EEEEE
Confidence 56999999999999999999999999994 45554
No 251
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=1.8e-13 Score=98.64 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=64.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..-|||+||+..+++++|+++|.+||+|..+.+...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-------------------------------------------- 42 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-------------------------------------------- 42 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT--------------------------------------------
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC--------------------------------------------
Confidence 357999999999999999999999999999998653
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+|+|||+|.+.++|++||+.||+..+.| ..|+|...
T Consensus 43 ----------------------kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 43 ----------------------QGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp ----------------------TTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ----------------------CcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 5699999999999999999999999999 56776544
No 252
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=102.95 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=69.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEE-EEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
..+|||+|||.++++++|+++|.+||.|..+ .|..+.. ++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~---------------------~g~~---------------- 47 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD---------------------TGNS---------------- 47 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT---------------------TCSC----------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC---------------------CCCc----------------
Confidence 4799999999999999999999999999999 8887754 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+..||+..+.| ..+.|......
T Consensus 48 -----------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 86 (96)
T 1x5t_A 48 -----------------------KGYAFINFASFDASDAAIEAMNGQYLCN----RPITVSYAFKK 86 (96)
T ss_dssp -----------------------CSEEEEEBSSHHHHHHHHHTTTTCEETT----EECEEEESCCC
T ss_pred -----------------------CeEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEeccc
Confidence 5699999999999999999999999999 56777665443
No 253
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=5.4e-13 Score=100.89 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=66.2
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+..+|||+|||.++++++|+++|.+||.|..+.+..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------------------------------------------- 45 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------------------------------------------- 45 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------------------------------------------
Confidence 4457999999999999999999999999999998862
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
++|||+|.+.++|++|++.||+..+.| ..+.|......
T Consensus 46 -------------------------~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 83 (103)
T 2dgu_A 46 -------------------------DYAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVFAKPP 83 (103)
T ss_dssp -------------------------SCEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEECCCC
T ss_pred -------------------------CEEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEEcCCC
Confidence 389999999999999999999999999 56777666544
No 254
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=100.57 Aligned_cols=81 Identities=10% Similarity=0.164 Sum_probs=68.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+.+..+.. ++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------------------~~~------------------ 44 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM---------------------HPH------------------ 44 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---------------------EEE------------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC---------------------CCC------------------
Confidence 36899999999999999999999999999999988764 111
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
..+++|||+|.+.++|++|+..|||..++| ..+.+.....
T Consensus 45 --------------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 84 (88)
T 4a8x_A 45 --------------------LSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITATAVLA 84 (88)
T ss_dssp --------------------EECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEECC
T ss_pred --------------------CCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEEEECCC
Confidence 015799999999999999999999999999 5566665533
No 255
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=1.3e-13 Score=105.56 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=64.9
Q ss_pred CCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 107 ~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
....+|||+|||.+ +++++|+++|.+||.|..+.| .
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~--------------------------------------- 61 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----H--------------------------------------- 61 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----E---------------------------------------
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----e---------------------------------------
Confidence 34479999999999 999999999999999999988 2
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|++.||+..++| ..+.|.....
T Consensus 62 -------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~ 99 (110)
T 1wf1_A 62 -------------------------KGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINMAGE 99 (110)
T ss_dssp -------------------------TTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEESCC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEECCC
Confidence 4699999999999999999999999999 4566665543
No 256
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-13 Score=104.65 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCee--------EEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCC
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGM 176 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~ 176 (341)
......+|||+|||.++++++|+++|.+||.|. .+.|..+.. +|..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------------~g~~----- 64 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE---------------------TGKP----- 64 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT---------------------TCSB-----
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC---------------------CCCe-----
Confidence 445568999999999999999999999999998 688887754 2333
Q ss_pred ccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 177 FSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 177 ~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++||+.|||..+.| ..+.|......
T Consensus 65 ----------------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 103 (113)
T 2cpe_A 65 ----------------------------------KGDATVSYEDPPTAKAAVEWFDGKDFQG----SKLKVSLARKK 103 (113)
T ss_dssp ----------------------------------CSEEEEEBSSHHHHHHHHHHHTTCEETT----EECEEECSSCC
T ss_pred ----------------------------------eeEEEEEECCHHHHHHHHHHcCCCccCC----CEEEEEECCCC
Confidence 5699999999999999999999999999 56777666544
No 257
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.48 E-value=1.5e-13 Score=99.52 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=67.7
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.+|||+|||.++++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---------------------~~~~------------------ 42 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ---------------------TGSS------------------ 42 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT---------------------TCCE------------------
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC---------------------CCCc------------------
Confidence 5899999999999999999999999999999988755 2332
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++|+..|||..++| ..+.+....
T Consensus 43 ---------------------~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~a~ 79 (83)
T 3md1_A 43 ---------------------RGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINWAA 79 (83)
T ss_dssp ---------------------EEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEECC
T ss_pred ---------------------cceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEecC
Confidence 5699999999999999999999999999 556665543
No 258
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-13 Score=107.15 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
+......+|||+|||.++++++|+++|.+||.|..+.|..+.. +|..
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------ 83 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE---------------------TRQS------------ 83 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT---------------------TTEE------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------------CCCc------------
Confidence 3445568999999999999999999999999999999998765 2333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|++.|||..+.| ..|.|......
T Consensus 84 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 122 (139)
T 1u6f_A 84 ---------------------------RGYGFVKFQSGSSAQQAIAGLNGFNILN----KRLKVALAASG 122 (139)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHHHHTTTEECSS----CEEEEEESSCC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCC
Confidence 5699999999999999999999999999 56777766544
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-13 Score=99.37 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=66.2
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.+..
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------------------------------------------- 43 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------------------------------------------- 43 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------------------------------------------
Confidence 4457999999999999999999999999999999863
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
++|||+|.+.++|++|+..|||..++| ..+.|......
T Consensus 44 -------------------------~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 81 (90)
T 2dnp_A 44 -------------------------DYAFVHMEKEADAKAAIAQLNGKEVKG----KRINVELSTKG 81 (90)
T ss_dssp -------------------------SCEEEEESCHHHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred -------------------------CEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEECCCC
Confidence 389999999999999999999999999 56777666544
No 260
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=2e-13 Score=100.96 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=66.9
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.|..+.. .
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g-----------------------~--------------- 46 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENG-----------------------K--------------- 46 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSS-----------------------C---------------
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCC-----------------------C---------------
Confidence 34558999999999999999999999999999999987422 1
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
.+++|||+|.+.++|++|+..||+..+.|+ .+.|...
T Consensus 47 ------------------------~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~a 83 (92)
T 2dgv_A 47 ------------------------SKGCGVVKFESPEVAERACRMMNGMKLSGR----EIDVRID 83 (92)
T ss_dssp ------------------------EEEEEEEEESSHHHHHHHHHHHTTCCBTTB----CCCCEEC
T ss_pred ------------------------cceEEEEEECCHHHHHHHHHHhCCCEECCc----EEEEEEc
Confidence 156999999999999999999999999994 4554444
No 261
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=1.8e-13 Score=104.27 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+.......+|||+|||..+++++|+++|.+||.|..+.|..+.. |..
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~----------- 69 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----------------------GRS----------- 69 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----------------------SCE-----------
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----------------------CCc-----------
Confidence 34556678999999999999999999999999999999988754 222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.|..
T Consensus 70 ----------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~ 104 (107)
T 3ulh_A 70 ----------------------------LGTADVHFERKADALKAMKQYNGVPLDG----RPMNIQL 104 (107)
T ss_dssp ----------------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred ----------------------------ceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEE
Confidence 5699999999999999999999999999 4555543
No 262
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=2e-13 Score=107.61 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=72.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
....+..+|||+|||.++++++|+++|.+||.|..+.|..+.. +|..
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------------------tg~~------------ 87 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---------------------SRRS------------ 87 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSS---------------------SSCC------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCcc------------
Confidence 3345568999999999999999999999999999999998765 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++||..|||..+.| ..|.|......
T Consensus 88 ---------------------------~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~l~V~~a~~~ 126 (129)
T 2kxn_B 88 ---------------------------RGFAFVYFENVDDAKEAKERANGMELDG----RRIRVDFSITK 126 (129)
T ss_dssp ---------------------------CCEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEESCCSSS
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 5699999999999999999999999999 55666655443
No 263
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-13 Score=99.32 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=68.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.+..
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---------------------------------------- 44 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---------------------------------------- 44 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----------------------------------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----------------------------------------
Confidence 3445568999999999999999999999999999998863
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
++|||+|.+.++|++|+..||+..+.| ..+.|......
T Consensus 45 ----------------------------~~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 82 (92)
T 2dgt_A 45 ----------------------------DYAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQLSTSR 82 (92)
T ss_dssp ----------------------------SEEEEEESCHHHHHHHHHHHTTEEETT----EEEEEEESSCC
T ss_pred ----------------------------CEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEEEccCC
Confidence 389999999999999999999999999 66777776544
No 264
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=9.2e-14 Score=123.15 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=71.9
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec--CCCCCcEEEEEEcCHHHHHHHHHhc-CCceeC---CeEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFD---GYRLRV 77 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~--~~~~~g~afV~F~~~e~A~~Ai~~l-ng~~i~---g~~l~v 77 (341)
.+.++|||+|||+.+|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..| +|..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999965 6778999999999999999999999 455555 999999
Q ss_pred EEccCC
Q 019418 78 ELAHGG 83 (341)
Q Consensus 78 ~~~~~~ 83 (341)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998754
No 265
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-13 Score=102.24 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHH-hCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
......+|||+|||.++++++|+++|.+ ||.|..+.|..+.. |.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----------------------g~~------------ 50 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----------------------GVS------------ 50 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----------------------CCE------------
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----------------------CCc------------
Confidence 3445589999999999999999999999 99999999988754 222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc-cccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~-~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|.+|++.||+.. +.|+ .+.+...
T Consensus 51 ---------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~~g~----~l~v~~a 87 (104)
T 2dhg_A 51 ---------------------------KGYGFVKFTDELEQKRALTECQGAVGLGSK----PVRLSVA 87 (104)
T ss_dssp ---------------------------EEEEEEEESCHHHHHHHHHHTTTCCSSSSS----CCCCCBC
T ss_pred ---------------------------cceEEEEECCHHHHHHHHHHccCCcccCCE----eEEEEEc
Confidence 5699999999999999999999999 9994 4555444
No 266
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-13 Score=103.23 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=69.1
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||..+++++|+++|.+||.|..+.|..+.. +|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~-------------- 64 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR---------------------TGYL-------------- 64 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------------TSSE--------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---------------------CCce--------------
Confidence 34557899999999999999999999999999999998765 2333
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|+..|||..+.|+ .+.|...
T Consensus 65 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~V~~a 100 (106)
T 1p27_B 65 -------------------------KGYTLVEYETYKEAQAAMEGLNGQDLMGQ----PISVDWC 100 (106)
T ss_dssp -------------------------EEEEEEEESCHHHHHHHHHHHTTCBSSSS----BCEEEES
T ss_pred -------------------------eeEEEEEECCHHHHHHHHHHhcCCEECCc----EEEEEee
Confidence 56999999999999999999999999994 4555443
No 267
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=3e-13 Score=101.87 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=66.4
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
++|||+|||.++++++|+++|.+||+|..+.+..+ .
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~------------------------------------------- 36 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-P------------------------------------------- 36 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-S-------------------------------------------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-C-------------------------------------------
Confidence 37999999999999999999999999999999876 3
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.|......
T Consensus 37 ---------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 37 ---------------------PGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp ---------------------SSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred ---------------------CCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 4699999999999999999999999999 45666665443
No 268
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.1e-13 Score=107.17 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=68.6
Q ss_pred CCCCEEEeCCCCC--CC---CHHHHHHHhhccCCEeEEEeecC-------CCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 4 RSSRTLYVGNLPG--DT---RMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 4 ~~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~I~~i~i~~~-------~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
.++++|+|.|+-. ++ .+++|+++|++||+|.+|.|+.+ +.++|||||+|.++++|.+|++.|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999942 22 36899999999999999999652 345699999999999999999999999999
Q ss_pred CeEEEEEEccC
Q 019418 72 GYRLRVELAHG 82 (341)
Q Consensus 72 g~~l~v~~~~~ 82 (341)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 269
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.47 E-value=2.6e-13 Score=101.21 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=64.4
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
+..+|||+|||.++++++|+++|.+||.|..+.+.+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------------------------------------------- 56 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------------------------------------------- 56 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------------------------------------------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------------------------------------------
Confidence 4479999999999999999999999999999998754
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc--cccccccceEEEeecc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVREYD 251 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~--~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|..|++.|++.. +.| ..+.+....
T Consensus 57 -----------------------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~~S~ 95 (100)
T 3r27_A 57 -----------------------KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVNYST 95 (100)
T ss_dssp -----------------------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEEECS
T ss_pred -----------------------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEEecc
Confidence 4599999999999999999999986 678 556666543
No 270
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5e-13 Score=98.43 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=66.8
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.+. .
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~---------------------------------------- 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---K---------------------------------------- 42 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---T----------------------------------------
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---C----------------------------------------
Confidence 445899999999999999999999999999999986 2
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
++|||+|.+.++|++|+..||+..++| ..+.+.......
T Consensus 43 -------------------------g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~~ 81 (90)
T 2dnq_A 43 -------------------------NYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEASKNKS 81 (90)
T ss_dssp -------------------------TEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEECSSCCC
T ss_pred -------------------------CEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEECCCCC
Confidence 499999999999999999999999999 557776665543
No 271
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-13 Score=102.35 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=70.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+.. ++..
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---------------------~g~~------------ 57 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT---------------------TNQS------------ 57 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS---------------------SCCE------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---------------------CCCc------------
Confidence 3445668999999999999999999999999999999998855 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+.. ++..+.| ..+.|.....
T Consensus 58 ---------------------------~g~afV~f~~~~~a~~a~~~-~~~~~~g----~~l~V~~a~~ 94 (105)
T 2dh8_A 58 ---------------------------RGFGFVKFKDPNCVGTVLAS-RPHTLDG----RNIDPKPCTP 94 (105)
T ss_dssp ---------------------------EEEEEEEESSTTHHHHHHHH-CSEEETT----EEEBCCCSCC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHh-CCCeECC----EEEEEEEccC
Confidence 56999999999999999999 9999999 4566555443
No 272
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.47 E-value=2.7e-13 Score=101.19 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=69.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+.|..+.. +|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~----------------- 43 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQ---------------------TGRS----------------- 43 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT---------------------TCCB-----------------
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------------CCcc-----------------
Confidence 36899999999999999999999999999999988754 2333
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|++.|||..++| ..+.+......
T Consensus 44 ----------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 82 (96)
T 2x1f_A 44 ----------------------KGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCGYSSNS 82 (96)
T ss_dssp ----------------------CSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECSCS
T ss_pred ----------------------ceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEEcCCC
Confidence 5699999999999999999999999999 56666655443
No 273
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=103.51 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||..+++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------ 67 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSE---------------------TGRS------------ 67 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETT---------------------TTEE------------
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---------------------CCcc------------
Confidence 3344568999999999999999999999999999999988755 2333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|..|++.|||..+.| ..+.|....
T Consensus 68 ---------------------------~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~ 104 (108)
T 2jrs_A 68 ---------------------------KGYGFITFSDSECAKKALEQLNGFELAG----RPMKVGHVT 104 (108)
T ss_dssp ---------------------------EEEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEEECSC
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEEcc
Confidence 4699999999999999999999999999 456665543
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7.4e-13 Score=98.94 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+..+|||+|||.++++++|+++|.+||.|..+.+..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------------------------------------------ 52 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------------------------------------------ 52 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------------------------------------------
Confidence 34579999999999999999999999999999988754
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccc--cccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~--g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.||+..+. | ..+.|.....+
T Consensus 53 ------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~~a~~~ 93 (97)
T 1why_A 53 ------------------------DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVDFAKSG 93 (97)
T ss_dssp ------------------------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEEECCCC
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEEECCCC
Confidence 359999999999999999999999999 7 45666655443
No 275
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=103.05 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=68.1
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.+..+.. +|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---------------------~g~~-------------- 56 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---------------------KGMP-------------- 56 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---------------------SSCE--------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---------------------CCCe--------------
Confidence 34457999999999999999999999999998777766544 2222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.|....
T Consensus 57 -------------------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 93 (98)
T 2cqp_A 57 -------------------------TGEAMVAFESRDEATAAVIDLNDRPIGS----RKVKLVLGS 93 (98)
T ss_dssp -------------------------EEEEEEEESCHHHHHHHHHHTTTCEETT----EECEEEESS
T ss_pred -------------------------eeEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEEEEcC
Confidence 5699999999999999999999999999 556666543
No 276
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.8e-13 Score=101.78 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||..+++++|+++|.+||.|..+.|..+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----------------------------------------- 61 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK----------------------------------------- 61 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----------------------------------------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----------------------------------------
Confidence 345799999999999999999999999999999998763
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
++|||+|.+.++|.+|+..|||..+.| ..+.|.......
T Consensus 62 -------------------------g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 100 (109)
T 1x4g_A 62 -------------------------GYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWGKESP 100 (109)
T ss_dssp -------------------------TEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECCCCCC
T ss_pred -------------------------CEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEecCCCC
Confidence 499999999999999999999999999 567776665443
No 277
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.6e-13 Score=100.83 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=68.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+.|..+.... .++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~------------------gt~~------------------ 48 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA------------------GVLL------------------ 48 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT------------------CCEE------------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC------------------CCcC------------------
Confidence 4799999999999999999999999999999998764300 0011
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
.+++|||+|.+.++|++|+..|||..+.| ..+.|......
T Consensus 49 ---------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 88 (98)
T 2cpf_A 49 ---------------------SMGFGFVEYKKPEQAQKALKQLQGHTVDG----HKLEVRISERA 88 (98)
T ss_dssp ---------------------EEEEEEEEESSHHHHHHHHHHSTTCEETT----EECEEECSSCS
T ss_pred ---------------------cccEEEEEECCHHHHHHHHHHhCCCeeCC----eEEEEEEccCC
Confidence 15699999999999999999999999999 56777665443
No 278
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=9.5e-13 Score=99.57 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=64.6
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+..+|||+|||.++++++|+++|.+||.|..+.|..+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------------------------------------------ 50 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------------------------------------------ 50 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------------------------------------------
Confidence 44579999999999999999999999999999988754
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccc--cccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~--~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|++.|++.. +.| ..+.+.....
T Consensus 51 ------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V~~a~~ 90 (104)
T 1wex_A 51 ------------------------KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFFNYSTS 90 (104)
T ss_dssp ------------------------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEEEECSS
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEEEccC
Confidence 3599999999999999999997754 888 4566655543
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=3.8e-13 Score=102.95 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||..+++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------- 67 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---------------------TGFS------------- 67 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTT---------------------TSSB-------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------------CCCc-------------
Confidence 344558999999999999999999999999999999987754 2333
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|.+|+..|||..+.| ..+.|....
T Consensus 68 --------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 104 (110)
T 1oo0_B 68 --------------------------KGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCF 104 (110)
T ss_dssp --------------------------CSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESE
T ss_pred --------------------------ceEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEEcc
Confidence 5699999999999999999999999999 456665543
No 280
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=6e-13 Score=99.85 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=67.7
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||..+++++|+++|.+||.|..+.+..+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----------------------------------------- 50 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----------------------------------------- 50 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------------------------
Confidence 345579999999999999999999999999999998755
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|++.|||..+.| ..+.|......
T Consensus 51 -------------------------kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~a~~~ 89 (99)
T 2cpj_A 51 -------------------------KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRFACHS 89 (99)
T ss_dssp -------------------------TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEESSCC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEEcCCC
Confidence 3599999999999999999999999999 45666655443
No 281
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.8e-13 Score=104.07 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCCCCEEEeCCCCCCC----------CHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 3 SRSSRTLYVGNLPGDT----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 3 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
..+++.|.|.|+=... .+++|+++|++||+|++|.|..+ ..+|||||+|.+.++|++|++.|||..|+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3578999999994322 23578999999999999999654 358999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 019418 73 YRLRVELAH 81 (341)
Q Consensus 73 ~~l~v~~~~ 81 (341)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999975
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=97.24 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
+......+|||+|||..+++++|+++|.+||.|..+.+..+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--------------------------------------- 47 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--------------------------------------- 47 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------------------------------------
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------------------------------------
Confidence 34455689999999999999999999999999999999864
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc-Cccccccc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL-DRSEFRNA 239 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l-~g~~~~g~ 239 (341)
+++|||+|.+.++|.+|+..| ++..+.|+
T Consensus 48 ---------------------------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 48 ---------------------------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp ---------------------------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred ---------------------------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 359999999999999999999 99999994
No 283
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-13 Score=103.08 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.+..+..
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------------------------- 66 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------------------------- 66 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--------------------------------------
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--------------------------------------
Confidence 344568999999999999999999999999999999987644
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
..+++|||+|.+.++|++|+..|||..++| ..+.|....
T Consensus 67 ------------------------~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 105 (109)
T 2err_A 67 ------------------------GSKGFGFVTFENSADADRAREKLHGTVVEG----RKIEVNNAT 105 (109)
T ss_dssp ------------------------BCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECEEEECC
T ss_pred ------------------------CCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECC
Confidence 125799999999999999999999999999 556665543
No 284
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.7e-13 Score=98.58 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEE-EEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+......+|||+|||.++++++|+++|.+||.|..+ .|..+..
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~------------------------------------ 53 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE------------------------------------ 53 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS------------------------------------
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC------------------------------------
Confidence 334456899999999999999999999999999999 4777765
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
.+.|||+|.+.++|..|+..|||..++| ..+.|....
T Consensus 54 ----------------------------~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 90 (96)
T 2e44_A 54 ----------------------------TAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKVAYIP 90 (96)
T ss_dssp ----------------------------SEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEECC
T ss_pred ----------------------------CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEcC
Confidence 3459999999999999999999999999 456655443
No 285
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=9.3e-13 Score=99.02 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=65.6
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
...+..+|||+|||.++++++|+++|.+||.|..+.|..+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------------------------------------- 50 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------------------------------------- 50 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----------------------------------------
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----------------------------------------
Confidence 3345579999999999999999999999999999988765
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcC--ccccccccccceEEEeeccC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~--g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|++.|+ +..+.| ..+.|.....
T Consensus 51 --------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V~~a~~ 90 (101)
T 2cq1_A 51 --------------------------KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYIQYSNH 90 (101)
T ss_dssp --------------------------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEEEECSC
T ss_pred --------------------------CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEEEEcCc
Confidence 3599999999999999999875 567888 5566665543
No 286
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.44 E-value=1.2e-13 Score=103.97 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=65.3
Q ss_pred cceeeeeCCCC------CCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 109 DYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 109 ~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
..+|||+|||. ++++++|+++|.+||.|..+.|+.+.. +|++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~---------------------tg~~----------- 53 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEA---------------------TGKT----------- 53 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETT---------------------TTEE-----------
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCC---------------------CCcc-----------
Confidence 47999999999 999999999999999999999998876 4444
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccc-cc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRN-AF 240 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g-~~ 240 (341)
+|+|||+|.+.++|++||+.|||..+.| +.
T Consensus 54 ----------------------------kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 54 ----------------------------KGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp ----------------------------CSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred ----------------------------ceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 5699999999999999999999999998 53
No 287
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=5.3e-13 Score=97.97 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=68.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+.+..+.. ++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~----------------- 47 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF---------------------SGHP----------------- 47 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS---------------------SSSC-----------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC---------------------CCCc-----------------
Confidence 36899999999999999999999999999999998764 1222
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+ .|||..+.| ..+.+...+.
T Consensus 48 ----------------------~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~~a~~ 84 (89)
T 3ucg_A 48 ----------------------KGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVIPKRT 84 (89)
T ss_dssp ----------------------CEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEEETTT
T ss_pred ----------------------ceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEEEccC
Confidence 579999999999999999 999999999 5677766543
No 288
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=102.84 Aligned_cols=83 Identities=29% Similarity=0.385 Sum_probs=70.6
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---------------------~g~~--------------- 49 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE---------------------TGKP--------------- 49 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT---------------------TTEE---------------
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC---------------------CCcc---------------
Confidence 3457999999999999999999999999999999988754 2333
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.+......
T Consensus 50 ------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 88 (104)
T 1p1t_A 50 ------------------------KGYGFCEYQDQETALSAMRNLNGREFSG----RALRVDNAASE 88 (104)
T ss_dssp ------------------------EEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEEEETTCT
T ss_pred ------------------------ceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEEeCCCc
Confidence 4699999999999999999999999999 55666665443
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=6.8e-13 Score=108.18 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=70.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..|.|+.+.. ++..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~--------------- 80 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM---------------------KKTA--------------- 80 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------------------TCCE---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCcc---------------
Confidence 3458999999999999999999999999999999998865 2222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++||..||+..|.| ..|.|.....
T Consensus 81 ------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~ 118 (156)
T 1h2v_Z 81 ------------------------CGFCFVEYYSRADAENAMRYINGTRLDD----RIIRTDWDAG 118 (156)
T ss_dssp ------------------------EEEEEEEESSHHHHHHHHHHTTTSEETT----EECEEEEESC
T ss_pred ------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCC
Confidence 5699999999999999999999999999 5667666644
No 290
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-12 Score=101.25 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------ 58 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ---------------------TGKS------------ 58 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSS---------------------SCCC------------
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCC---------------------CCcc------------
Confidence 4445668999999999999999999999999999999988755 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++||+.|++ .+.| ..|.|....
T Consensus 59 ---------------------------~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~~l~V~~a~ 94 (116)
T 2cqd_A 59 ---------------------------RGYGFVTMADRAAAERACKDPNP-IIDG----RKANVNLAY 94 (116)
T ss_dssp ---------------------------CSEEEEEESSHHHHHHHHTCSSC-EETT----EECEEEEST
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHHhCCC-cCCC----EEEEEEEcc
Confidence 56999999999999999999998 8999 566666654
No 291
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.3e-13 Score=102.28 Aligned_cols=76 Identities=7% Similarity=0.069 Sum_probs=65.4
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.+..+|||+|||.++++++|+++|.+||.|..+.|+.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------------------------------------------ 66 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------------------------------------------ 66 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------------------------------------------
Confidence 44579999999999999999999999999999999865
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCc--cccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g--~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|++.++|.+|++.|++ ..+.| ..|.|.....
T Consensus 67 ------------------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V~~a~~ 106 (119)
T 2ad9_A 67 ------------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQFSNH 106 (119)
T ss_dssp ------------------------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEEEECSS
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEEEEccC
Confidence 35999999999999999999985 57888 5566665543
No 292
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=109.27 Aligned_cols=79 Identities=20% Similarity=0.134 Sum_probs=68.5
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhC--CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
...+|||+|||.++++++|+++|.+|| .|..+.|..+.. +|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~---------------------tg~s-------------- 98 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA---------------------NGQS-------------- 98 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT---------------------TCCE--------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC---------------------CCcc--------------
Confidence 457999999999999999999999999 999999998865 3444
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+|+|||+|.+.++|++||..|||..++| ..|.|...
T Consensus 99 -------------------------kGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l~V~~a 134 (156)
T 3n9u_C 99 -------------------------KGYAEVVVASENSVHKLLELLPGKVLNG----EKVDVRPA 134 (156)
T ss_dssp -------------------------EEEEEEEESCHHHHHHHHHHSTTCEETT----EECEEEEC
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHcCCCEECC----eEeEEEEc
Confidence 5699999999999999999999999999 55666544
No 293
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=106.21 Aligned_cols=82 Identities=6% Similarity=0.102 Sum_probs=68.6
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE--EEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.....+|||+|||.++++++|+++|.+||.|.. |.|+.+.. +|.+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~---------------------tg~~------------ 66 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ---------------------TQLN------------ 66 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS---------------------SSSB------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC---------------------CCCc------------
Confidence 345679999999999999999999999999966 99998875 3433
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcc----ccccccccceEEEeeccC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRS----EFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~----~~~g~~~~~~~~~~~~~~ 252 (341)
+|+|||+|.+. +|.+|+..|||. .++|+ .|.|.....
T Consensus 67 ---------------------------rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr----~l~V~~a~~ 107 (131)
T 2m2b_A 67 ---------------------------RGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK----TINVEFAKG 107 (131)
T ss_dssp ---------------------------CSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC----CCCCEECCC
T ss_pred ---------------------------ceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE----EEEEEECCC
Confidence 57999999999 999999999999 99994 455544433
No 294
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.1e-13 Score=100.87 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=64.6
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
+..+|||+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~---------------------~~~~---------------- 46 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT---------------------TNKC---------------- 46 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS---------------------SCSC----------------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCCc----------------
Confidence 347999999999999999999999999999999988755 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.++|+.|++.|||..+.|+.
T Consensus 47 -----------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 47 -----------------------KGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp -----------------------CSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred -----------------------CcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 569999999999999999999999999943
No 295
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=8.9e-14 Score=110.79 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHH
Q 019418 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (341)
Q Consensus 46 g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 125 (341)
++||.+|..++.+..|+..+..+ ..|...--.. .............+|||+|||.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888877776653322 1222110000 0001123334557999999999999999
Q ss_pred HHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccc
Q 019418 126 LKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESY 205 (341)
Q Consensus 126 l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~ 205 (341)
|+++|.+|| |+.|.|+.+.. |++
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~----------------------g~s---------------------------------- 85 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPD----------------------GRV---------------------------------- 85 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSS----------------------SCS----------------------------------
T ss_pred HHHHHHhcC-CeEEEEEECCC----------------------CCC----------------------------------
Confidence 999999999 77999887754 333
Q ss_pred cccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 206 HNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 206 ~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|| .+|+..+.|+ +|.|...
T Consensus 86 -----rGfaFV~F~~~e~A~~Al-~~~g~~l~gR----~i~V~~a 120 (139)
T 2hgn_A 86 -----TGEADVEFATHEEAVAAM-SKDRANMQHR----YIELFLN 120 (139)
T ss_dssp -----SCCCEEECSHHHHHHHHT-TCCSCSSSSC----CCCCEEC
T ss_pred -----ceEEEEEeCCHHHHHHHH-hhCCCEECCE----EEEEEEC
Confidence 579999999999999999 8999999994 4554443
No 296
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.8e-13 Score=100.13 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+|| ++.+.|+.+.. |++
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----------------------g~~------------ 54 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----------------------GRV------------ 54 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----------------------SCE------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----------------------CCE------------
Confidence 3445568999999999999999999999999 55899887755 333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|| ++|+..+.|+ .|.|...
T Consensus 55 ---------------------------~G~afV~F~~~~~a~~Al-~~~~~~~~gr----~i~V~~~ 89 (102)
T 1wez_A 55 ---------------------------TGEADVEFATHEDAVAAM-AKDKANMQHR----YVELFLN 89 (102)
T ss_dssp ---------------------------EEEEEEECSSSHHHHHHH-TTSSCCSSSS----CCEEEEE
T ss_pred ---------------------------eeEEEEEECCHHHHHHHH-HhCCCeECCc----EEEEEEC
Confidence 569999999999999999 5799999994 5665544
No 297
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=7.3e-13 Score=96.81 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------- 52 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN---------------------TGRS------------- 52 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT---------------------TCCE-------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---------------------CCcc-------------
Confidence 344557999999999999999999999999999999998765 2333
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEe
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 248 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~ 248 (341)
+++|||+|.+.++|.+|++. ++..++| ..+.+.
T Consensus 53 --------------------------~g~afV~f~~~~~a~~A~~~-~~~~~~g----~~i~v~ 85 (87)
T 3s7r_A 53 --------------------------RGFGFILFKDAASVEKVLDQ-KEHRLDG----RVIDPK 85 (87)
T ss_dssp --------------------------EEEEEEEESSTHHHHHHHHS-SCEEETT----EEEEEE
T ss_pred --------------------------ccEEEEEECCHHHHHHHHHh-CCCEECC----EEEEEE
Confidence 56999999999999999955 7778988 455543
No 298
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=6.2e-13 Score=101.99 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=71.3
Q ss_pred CCCcceeeeeCCCCCCCHHHHH---HHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 106 RRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.....+|||+|||.++++++|+ ++|.+||+|..+.|..+.. ++..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~---------------------~~~~----------- 59 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS---------------------YAGS----------- 59 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS---------------------CCSS-----------
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC---------------------cCcc-----------
Confidence 3445799999999999999999 9999999999999987754 1100
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
-..+++|||+|.+.++|++||+.|||..++| ..+.|.....+
T Consensus 60 -------------------------~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V~~a~~k 101 (111)
T 2cpi_A 60 -------------------------QGPSASAYVTYIRSEDALRAIQCVNNVVVDG----RTLKASLGTTK 101 (111)
T ss_dssp -------------------------SCCCEEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEESCCCC
T ss_pred -------------------------CCCCeEEEEEECcHHHHHHHHHHhCCCEECC----EEEEEEecccc
Confidence 0124799999999999999999999999999 56777766544
No 299
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6e-13 Score=100.19 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=65.7
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.| .+..+.. +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----------------------g~-------------- 51 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----------------------GK-------------- 51 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----------------------SC--------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----------------------CC--------------
Confidence 34456899999999999999999999999987 3444322 22
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
.+++|||+|.+.++|++|+..||+..+.| ..+.|.....+
T Consensus 52 -------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 91 (101)
T 2fc9_A 52 -------------------------SKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLELQGPR 91 (101)
T ss_dssp -------------------------BCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEECSSC
T ss_pred -------------------------EeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEEcCCC
Confidence 25799999999999999999999999999 56777766554
No 300
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.9e-13 Score=103.12 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------------------------------------------ 45 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------------------------------------------ 45 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------------------------------------------
Confidence 34579999999999999999999999999999988753
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|+.||..|||..+.|+ .+.|...
T Consensus 46 ------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a 81 (111)
T 1whx_A 46 ------------------------GITAIVEFLEPLEARKAFRHLAYSKFHHV----PLYLEWA 81 (111)
T ss_dssp ------------------------SSCEEEEESCHHHHHHHHHHHTTCBSSSS----BCEEEEE
T ss_pred ------------------------CCEEEEEeCCHHHHHHHHHHhCCCEECCe----EEEEEEC
Confidence 45999999999999999999999999994 4555443
No 301
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.1e-13 Score=100.54 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=63.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|+.+.. |.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----------------------g~~--------------- 51 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----------------------KAF--------------- 51 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----------------------TSC---------------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----------------------CCC---------------
Confidence 3447999999999999999999999999999999988754 222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|+|||+|.+.++|..|+. +++..++|+.
T Consensus 52 ------------------------rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 52 ------------------------KGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp ------------------------CCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred ------------------------ccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 6799999999999999998 9999999954
No 302
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.42 E-value=8.6e-13 Score=102.29 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=66.4
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. +|..
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------------------~g~~------------ 81 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQ---------------------TSLS------------ 81 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSS---------------------SSCC------------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC---------------------CCCc------------
Confidence 3445568999999999999999999999999999999988754 2222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++|||+|.+.++|++|++.|||..++|+
T Consensus 82 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 82 ---------------------------KCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp ---------------------------CCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred ---------------------------CcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 56999999999999999999999999994
No 303
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-12 Score=96.40 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHh--CCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
......+|||+|||..+++++|+++|.+| |.|..+.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------------------------------------- 50 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------------------------------------- 50 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----------------------------------------
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----------------------------------------
Confidence 33455799999999999999999999999 889888764
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|......
T Consensus 51 ----------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 89 (99)
T 2cpd_A 51 ----------------------------RDYAFVHFSNREDAVEAMKALNGKVLDG----SPIEVTLAKPV 89 (99)
T ss_dssp ----------------------------SSEEEEEESSHHHHHHHHHHHSSEEETT----EEEEEECCCCC
T ss_pred ----------------------------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 2599999999999999999999999999 56777766543
No 304
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.1e-13 Score=103.51 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|..+.. +|..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~--------------- 66 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN---------------------SRRS--------------- 66 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCC---------------------SSSC---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCC---------------------CCcc---------------
Confidence 4457999999999999999999999999999999988765 2222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|| .||+..+.| ..|.|.....
T Consensus 67 ------------------------~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~a~~ 103 (114)
T 2cq4_A 67 ------------------------KGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPIIVQASQA 103 (114)
T ss_dssp ------------------------CCCEEEEESCGGGHHHHH-HHTTEEETT----EEEEEEEHHH
T ss_pred ------------------------CcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEEEEecCC
Confidence 569999999999999999 999999999 5677765543
No 305
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-12 Score=96.89 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=68.9
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~------------ 56 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---------------------TGHS------------ 56 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS---------------------SCSE------------
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCCc------------
Confidence 3445568999999999999999999999999999999998865 2333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+.. +..++| ..+.|......
T Consensus 57 ---------------------------~g~afV~f~~~~~a~~A~~~--~~~~~g----~~l~v~~a~~~ 93 (103)
T 2cqg_A 57 ---------------------------KGFGFVRFTEYETQVKVMSQ--RHMIDG----RWCDCKLPNSK 93 (103)
T ss_dssp ---------------------------EEEEEEEESSHHHHHHHHHS--CEEETT----EEEEEECCCTT
T ss_pred ---------------------------cceEEEEECCHHHHHHHHHc--CCeeCC----eEEEEEecCCC
Confidence 56999999999999999984 668888 56777665443
No 306
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=6.3e-13 Score=104.02 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=68.6
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~---------------- 77 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF---------------------SGHP---------------- 77 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT---------------------TSSC----------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------------CCCc----------------
Confidence 357999999999999999999999999999999988754 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|+ .|||..+.| ..+.|...+.
T Consensus 78 -----------------------~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V~~a~~ 114 (124)
T 2jwn_A 78 -----------------------KGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKVLPKRT 114 (124)
T ss_dssp -----------------------EEEEEEEESSHHHHHHHH-TTTTCEETT----EECEEEESSC
T ss_pred -----------------------ccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEEECCC
Confidence 569999999999999999 899999999 5677766543
No 307
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=96.64 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.+.....+|||+|||.++++++|+++|.+| .|..+.|..+.. |..
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----------------------g~~------------ 49 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----------------------GNK------------ 49 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----------------------SCE------------
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----------------------CCC------------
Confidence 344556899999999999999999999999 999999998733 333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|+. ||+..+.| ..|.|.....
T Consensus 50 ---------------------------~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~v~~a~~ 86 (91)
T 2dgw_A 50 ---------------------------TGYIFVDFSNEEEVKQALK-CNREYMGG----RYIEVFREKS 86 (91)
T ss_dssp ---------------------------EEEEEEECSSHHHHHHHHH-SCSEEETT----EEEEEEEESS
T ss_pred ---------------------------ceEEEEEECCHHHHHHHHH-hCCceeCC----cEEEEEECCc
Confidence 5699999999999999999 99999999 5677766544
No 308
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=99.08 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCcceeeeeCCCCCC------CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 107 RSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
....+|||+|||..+ ++++|+++|.+||.|..+.|.. . +|.+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~---------------------~g~~--------- 60 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--E---------------------DGKT--------- 60 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--B---------------------TTBS---------
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--C---------------------CCCe---------
Confidence 345799999999999 7899999999999999999873 2 1222
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+|+|||+|.+.++|.+||..|||..+.|+ ..+.|....
T Consensus 61 ------------------------------~G~afV~f~~~~~A~~Ai~~l~g~~~~g~---~~l~V~~a~ 98 (105)
T 2nlw_A 61 ------------------------------KGYIFLEYASPAHAVDAVKNADGYKLDKQ---HTFRVNLFT 98 (105)
T ss_dssp ------------------------------CCEEEEEECSSSHHHHHHHHCSSEECSTT---CEEEEECSC
T ss_pred ------------------------------eeEEEEEECCHHHHHHHHHHhCCcccCCC---ceEEEEEcc
Confidence 57999999999999999999999999993 156666543
No 309
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=97.01 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=60.0
Q ss_pred ceeeeeCCCCCC------CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 110 ~~l~V~nlp~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.+|||+|||..+ ++++|+++|.+||.|..+.|... . |.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~----------------------g~~------------ 46 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----------------------GKT------------ 46 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-T----------------------TBC------------
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-C----------------------CcE------------
Confidence 589999999999 67999999999999999998732 1 222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++|||+|.+.++|++|++.|||..+.|+
T Consensus 47 ---------------------------~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 47 ---------------------------KGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp ---------------------------CCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred ---------------------------eEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57999999999999999999999999995
No 310
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=102.18 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCcceeeeeCCCCCCCHHHHH----HHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 107 RSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.+..+|||+|||..+++++|+ ++|.+||.|..|.+.....
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~------------------------------------ 70 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDD------------------------------------ 70 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCC------------------------------------
Confidence 345799999999999999876 6999999999988754322
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
.+|+|||+|.+.++|..||..|||..+.| ..+.|.....
T Consensus 71 ---------------------------~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~l~V~~a~~ 109 (127)
T 2a3j_A 71 ---------------------------NSGKAYIVFATQESAQAFVEAFQGYPFQG----NPLVITFSET 109 (127)
T ss_dssp ---------------------------SCCCEEEEESSHHHHHHHHHHSTTCCCTT----SCCEEEECCC
T ss_pred ---------------------------cCCEEEEEECCHHHHHHHHHHHCCCEeCC----CEEEEEEccC
Confidence 26799999999999999999999999999 4566655443
No 311
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=3.4e-12 Score=99.83 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=71.9
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+.......+|||+|||..+++++|+++|.+||.|..+.|..+.. |..
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----------------------g~~----------- 75 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----------------------GRS----------- 75 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----------------------SSC-----------
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----------------------CCE-----------
Confidence 34556678999999999999999999999999999999987754 222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|+..|||..++| ..+.|.....
T Consensus 76 ----------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~ 113 (124)
T 2kt5_A 76 ----------------------------LGTADVHFERRADALKAMKQYKGVPLDG----RPMDIQLVAS 113 (124)
T ss_dssp ----------------------------CSEEEEEESSHHHHHHHHHHHTTEESSS----CEEEEEEECC
T ss_pred ----------------------------eeEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEEeCC
Confidence 5799999999999999999999999999 5566655443
No 312
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=104.14 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=69.8
Q ss_pred CCCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 103 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+.......+|||+|||..+++++|+++|.+||.|..+.|..+.. +|..
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------------------~~~~----------- 104 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------------TEKH----------- 104 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTT---------------------TCCC-----------
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCC---------------------CCCc-----------
Confidence 34455678999999999999999999999999999999988754 2222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEe
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 248 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~ 248 (341)
+++|||+|.+.++|++|++.|||..+.| ..++|.
T Consensus 105 ----------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~ 138 (140)
T 2ku7_A 105 ----------------------------RGFAFVEFELAEDAAAAIDNMNESELFG----RTIRVN 138 (140)
T ss_dssp ----------------------------CSEEEEEESCHHHHHHHHHHSTEEEETT----EEEEEE
T ss_pred ----------------------------CcEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEE
Confidence 5799999999999999999999999999 455553
No 313
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-12 Score=100.73 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCe----eEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.+..+|||+|||.++++++|+++|.+||.| ..+.+.....
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~------------------------------------ 66 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM------------------------------------ 66 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc------------------------------------
Confidence 445899999999999999999999999988 4555442222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|+.|+..|||..+.| ..+.|.......
T Consensus 67 ----------------------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~a~~~~ 106 (115)
T 2cpx_A 67 ----------------------------RGQAFITFPNKEIAWQALHLVNGYKLYG----KILVIEFGKNKK 106 (115)
T ss_dssp ----------------------------CSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCEEEECCCCS
T ss_pred ----------------------------ceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEEccCCC
Confidence 5799999999999999999999999999 557776665443
No 314
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=8e-13 Score=100.85 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+||.|..+.+. .
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---k-------------------------------------- 65 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---N-------------------------------------- 65 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---T--------------------------------------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---C--------------------------------------
Confidence 34456899999999999999999999999999999987 2
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
++|||+|.+.++|++|+..|||..++| ..+.|......
T Consensus 66 ---------------------------g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 103 (108)
T 2jvo_A 66 ---------------------------GFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVVYSKLP 103 (108)
T ss_dssp ---------------------------TEEEEECSSHHHHHHHHHHHTTCEETT----EECEEESCSCC
T ss_pred ---------------------------CEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEecCC
Confidence 499999999999999999999999999 56777665443
No 315
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=99.50 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=67.8
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeE-EEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
++.....+|||+|||.++++++|+++|.+||.|.. +.|..+.. |++
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----------------------g~~----------- 56 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----------------------GRS----------- 56 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----------------------SCB-----------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----------------------CCc-----------
Confidence 44556689999999999999999999999999987 77877633 333
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++||.. |+..++| ..|.|...
T Consensus 57 ----------------------------~G~afV~F~~~~~a~~A~~~-~~~~~~g----r~i~v~~~ 91 (104)
T 1wg5_A 57 ----------------------------TGEAFVQFASQEIAEKALKK-HKERIGH----RYIEIFKS 91 (104)
T ss_dssp ----------------------------CSEEEEEESSHHHHHHHHTT-TTCCSSS----SCCEEEEE
T ss_pred ----------------------------ceEEEEEECCHHHHHHHHHh-CcchhCC----cEEEEEEC
Confidence 56999999999999999998 9999999 45666544
No 316
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.41 E-value=1.4e-12 Score=100.57 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=67.6
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||..+++++|+++|.+||.|..+.|..+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---------------------------------------- 45 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---------------------------------------- 45 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT----------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC----------------------------------------
Confidence 3447999999999999999999999999999999987644
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
.+++|||+|.+.++|..|+..|||..+.| ..+.+....
T Consensus 46 -----------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~ 83 (115)
T 3lqv_A 46 -----------------------TRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVLYYN 83 (115)
T ss_dssp -----------------------TTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEEECC
T ss_pred -----------------------CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEec
Confidence 15699999999999999999999999999 456665543
No 317
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.40 E-value=2e-13 Score=101.52 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=66.1
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+|||.++++++|+++|.+||.|..+.+..+.. ++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~---------------------~g~~---------------- 56 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---------------------KGMP---------------- 56 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECT---------------------TSCE----------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCC---------------------CCCE----------------
Confidence 348999999999999999999999999998877776644 2222
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++|++.||+..+.| ..+.|...
T Consensus 57 -----------------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~v~~a 92 (95)
T 2ek1_A 57 -----------------------TGEAMVAFESRDEATAAVIDLNDRPIGS----RKVKLSGP 92 (95)
T ss_dssp -----------------------EEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred -----------------------eeEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEec
Confidence 5699999999999999999999999999 45665543
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.8e-13 Score=97.43 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=63.4
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCC-eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
...+|||+|||.++++++|+++|.+||. |..+.+..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~------------------------------------------- 43 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------------------------------------------- 43 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-------------------------------------------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC-------------------------------------------
Confidence 4479999999999999999999999999 65555521
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCc-cccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g-~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|++.||| ..++| ..+.+......
T Consensus 44 ------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a~~~ 83 (93)
T 2cqh_A 44 ------------------------SGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVDYSVSK 83 (93)
T ss_dssp ------------------------TTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEEECCCC
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEEEccCc
Confidence 46999999999999999999999 99999 56777666544
No 319
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.5e-12 Score=100.57 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=70.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|..+.. ++..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------------------~g~~--------------- 68 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA---------------------SKRS--------------- 68 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT---------------------TSSC---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC---------------------CCCc---------------
Confidence 4457999999999999999999999999999999998755 2333
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++||.. ++..++| ..+.|.....+.
T Consensus 69 ------------------------~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~V~~a~~~~ 107 (116)
T 1x4b_A 69 ------------------------RGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVEPKRAVARE 107 (116)
T ss_dssp ------------------------CSEEEEECSSHHHHHHHHTS-CSEEETT----EEEEEECCSSCC
T ss_pred ------------------------CceEEEEeCCHHHHHHHHHh-CCcEECC----EEEEEEECCCCc
Confidence 56999999999999999998 9999999 567777665443
No 320
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=5e-13 Score=94.84 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=60.9
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEe
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYF 190 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~ 190 (341)
+|||+|||.++++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------------- 40 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT---------------------TNRH------------------- 40 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSS---------------------STTS-------------------
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------------------CCCc-------------------
Confidence 589999999999999999999999999999988764 2222
Q ss_pred ecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 191 KCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 191 ~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.++|++|++ ||+..++|+.
T Consensus 41 --------------------~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 41 --------------------RGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp --------------------CBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred --------------------CcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 5799999999999999997 9999999943
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=2.3e-12 Score=104.61 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=67.4
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
.....|||+||+..+++++|+++|.+||+|..+.|.....
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~---------------------------------------- 83 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN---------------------------------------- 83 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS----------------------------------------
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC----------------------------------------
Confidence 3446799999999999999999999999999999975543
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|++.|||..|.|.. +.++|...+.
T Consensus 84 ------------------------rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g--~~L~V~~Ak~ 123 (164)
T 1sjr_A 84 ------------------------QFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSKL 123 (164)
T ss_dssp ------------------------CEEEEEEESCHHHHHHHHHHSTTBCSSSSC--SCEEEEECSS
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHhCCCEecCCC--cEEEEEEecC
Confidence 569999999999999999999999996522 4566665543
No 322
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.6e-13 Score=100.38 Aligned_cols=79 Identities=29% Similarity=0.344 Sum_probs=67.3
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||.++++++|+++|.+| .|..+.|+.+.. |++
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----------------------g~~------------- 55 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----------------------GRN------------- 55 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----------------------CCC-------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----------------------CCC-------------
Confidence 33445799999999999999999999999 899999988754 333
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+|+|||+|.+.++|++|| .||+..+.| ..|.|...
T Consensus 56 --------------------------~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~V~~a 90 (109)
T 2dnn_A 56 --------------------------NGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVEVSPA 90 (109)
T ss_dssp --------------------------CSEEEEECSSHHHHHHHH-HTTTEEETT----EEEEEEEC
T ss_pred --------------------------CeEEEEEECCHHHHHHHH-hcCCCeECC----eEEEEEEC
Confidence 579999999999999999 799999999 56776544
No 323
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.3e-13 Score=98.23 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCcceeeeeCCCC-CCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 107 ~~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.+..+|||+|||. .+++++|+++|.+||.|..+.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------------------------------------------- 44 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------------------------------------------- 44 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------------------------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------------------------
Confidence 3457999999998 99999999999999999999884
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|..|+..|||..+.|+ .+.|...
T Consensus 45 -------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~V~~a 80 (96)
T 2kvi_A 45 -------------------------NAFGFIQFDNPQSVRDAIECESQEMNFGK----KLILEVS 80 (96)
T ss_dssp -------------------------TTEEEEEESCHHHHHHHHHHHTCSSCBTT----TBCEEEE
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHcCCCeeCCc----EEEEEEc
Confidence 25999999999999999999999999994 4454444
No 324
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=7.6e-13 Score=105.04 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=69.9
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC---eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
++.....+|||+|||.++++++|+++|.+||. |..+.|..+.. |++
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----------------------g~s--------- 87 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----------------------GRQ--------- 87 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----------------------SCE---------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----------------------CCC---------
Confidence 45556789999999999999999999999999 88999988765 333
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+|+|||+|.+.++|++||+ ||+..++| ..|.|...
T Consensus 88 ------------------------------rG~aFV~F~~~e~a~~Al~-~~g~~l~g----r~i~V~~a 122 (136)
T 2hgl_A 88 ------------------------------SGEAFVELGSEDDVKMALK-KDRESMGH----RYIEVFKS 122 (136)
T ss_dssp ------------------------------EEEEEEECSSHHHHHHHHT-TTEEESSS----SEEEEEEC
T ss_pred ------------------------------CeEEEEEECCHHHHHHHHh-cCCCEECC----EEEEEEEC
Confidence 5699999999999999999 99999999 56776544
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=2.4e-12 Score=96.15 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=64.8
Q ss_pred CCCCcceeeeeCCCC-CCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 105 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
......+|||+|||. ++++++|+++|.+||.|..+.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----------------------------------------- 56 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----------------------------------------- 56 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------------------------------------
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------------------------------------
Confidence 344568999999998 99999999999999999999883
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|.+|+..|||..+.| ..+.+....
T Consensus 57 ---------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~ 93 (97)
T 2xnq_A 57 ---------------------------NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLILEVSS 93 (97)
T ss_dssp ---------------------------SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEEEECC
T ss_pred ---------------------------CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEecC
Confidence 3599999999999999999999999999 556665543
No 326
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.38 E-value=1.8e-12 Score=99.04 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=67.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|..+.|..+.. +|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---------------------tg~~--------------- 66 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---------------------TKRS--------------- 66 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTT---------------------TCCC---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCC---------------------CCCc---------------
Confidence 4457999999999999999999999999999999988765 2333
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+|+..++ ..++| ..+.+.....+
T Consensus 67 ------------------------kg~afV~f~~~~~A~~Ai~~~~-~~l~g----~~l~V~~a~~~ 104 (109)
T 2rs2_A 67 ------------------------RGFGFVTFMDQAGVDKVLAQSR-HELDS----KTIDPKVAFPR 104 (109)
T ss_dssp ------------------------TTCEEEEESSHHHHHHHHHSSC-EEETT----EEEEEEECCCC
T ss_pred ------------------------CcEEEEEECCHHHHHHHHHHCC-CcCCC----EEEEEEEccCC
Confidence 5699999999999999999875 88999 56777665544
No 327
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.5e-13 Score=103.65 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.+.....+|||+|||.++++++|+++|.+||.|..+.++.+.. +|..
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~---------------------~g~~------------ 66 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP---------------------NGKA------------ 66 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT---------------------TSSE------------
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC---------------------CCCC------------
Confidence 3445668999999999999999999999999998744444333 2333
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++||. ||+..|+|+ .|.|...
T Consensus 67 ---------------------------~G~afV~F~~~~~a~~Al~-~~g~~~~gr----~i~V~~a 101 (124)
T 1wel_A 67 ---------------------------TGEGFVEFRNEADYKAALC-RHKQYMGNR----FIQVHPI 101 (124)
T ss_dssp ---------------------------EEEEEEEBSSSHHHHHHHT-SCSBCSTTS----CBEEEEE
T ss_pred ---------------------------CeEEEEEECCHHHHHHHHH-hCCCeECCc----EEEEEEC
Confidence 5699999999999999999 999999994 5665443
No 328
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=101.74 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=69.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC---eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
++.....+|||+|||.++++++|+++|.+||. |..+.|..+.. |++
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----------------------g~~--------- 60 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----------------------GRQ--------- 60 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----------------------SCE---------
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----------------------CCC---------
Confidence 44455689999999999999999999999998 89999988755 222
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|++||+ ||+..+.| ..|.|...
T Consensus 61 ------------------------------~G~afV~F~~~~~a~~Al~-~~g~~~~g----r~i~V~~a 95 (118)
T 2db1_A 61 ------------------------------SGEAFVELESEDDVKLALK-KDRESMGH----RYIEVFKS 95 (118)
T ss_dssp ------------------------------EEEEEEEBSSHHHHHHHGG-GTTEEETT----EEEEEEEE
T ss_pred ------------------------------CeEEEEEECCHHHHHHHHh-cCCCeECC----eEEEEEEC
Confidence 5699999999999999999 99999999 56776544
No 329
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.4e-12 Score=97.10 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=69.9
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.|..+.. +.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----------------------g~~-------------- 65 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----------------------GTS-------------- 65 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----------------------SCE--------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----------------------CCc--------------
Confidence 34558999999999999999999999999999999988754 222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc----ccceEEEeecc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SRSYVRVREYD 251 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~----~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++|+..|||..+.+.. ....+.+...+
T Consensus 66 -------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 66 -------------------------RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp -------------------------EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 569999999999999999999999997654 23445555443
No 330
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=7.7e-13 Score=101.01 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=63.6
Q ss_pred CCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
..+..+|||+|||.+ +++++|+++|.+||+|..+.|...
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------------------------------------- 61 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------------------------------------- 61 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----------------------------------------
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----------------------------------------
Confidence 345689999999998 999999999999999999999753
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCc--cccccccccceEEEeec
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVREY 250 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g--~~~~g~~~~~~~~~~~~ 250 (341)
+++|||+|.+.++|..||+.|++ ..+.| ..+.|...
T Consensus 62 --------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~~a 99 (112)
T 1x4f_A 62 --------------------------KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVKVDLS 99 (112)
T ss_dssp --------------------------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCEEEEE
T ss_pred --------------------------CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEEEC
Confidence 45999999999999999999875 45888 44555544
No 331
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.4e-12 Score=98.13 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=60.7
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
...+|||+|||.++++++|+++|.+||.|..+.+...
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~------------------------------------------- 62 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE------------------------------------------- 62 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-------------------------------------------
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-------------------------------------------
Confidence 3479999999999999999999999999999998743
Q ss_pred EEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++|||+|.+.++|..|+..|||..++|+
T Consensus 63 -----------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 63 -----------------------KGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp -----------------------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred -----------------------CCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 46999999999999999999999999994
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.7e-12 Score=93.34 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|| ++++++|+++|.+||.|..+.|...
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----------------------------------------- 48 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----------------------------------------- 48 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT-----------------------------------------
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC-----------------------------------------
Confidence 345579999996 8999999999999999999998532
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|.+||..||+..+.| ..+.|.......
T Consensus 49 -------------------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~a~~~~ 88 (97)
T 1x5p_A 49 -------------------------RNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIARKQP 88 (97)
T ss_dssp -------------------------TTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEECCSSCC
T ss_pred -------------------------CCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEECCCCC
Confidence 4699999999999999999999999999 567777665543
No 333
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=93.30 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=61.9
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.+|||+|||.++++++|+++|.+||+|..+.+..+.. +|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---------------------~~~~------------------ 41 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---------------------TKRS------------------ 41 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCC---------------------SSSC------------------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCC---------------------CCCc------------------
Confidence 3799999999999999999999999999999988765 2222
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.++|++|++.++ ..++|+.
T Consensus 42 ---------------------~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 42 ---------------------RGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp ---------------------SSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred ---------------------CceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 5699999999999999999999 9999943
No 334
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.37 E-value=1.3e-12 Score=97.48 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCCcceeeeeCCCCCCCHHHHH----HHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccc
Q 019418 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLY 181 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~ 181 (341)
..+..+|||+|||.++++++|+ ++|.+||.|..+.+... |..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------------------------~~~---------- 50 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------------------------LKM---------- 50 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------------------------HHH----------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------------------------CCc----------
Confidence 3445799999999999999999 99999999999988632 222
Q ss_pred cceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 182 RFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 182 ~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|..|+..|||..+.| ..+.+.....
T Consensus 51 -----------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~a~~ 88 (97)
T 1nu4_A 51 -----------------------------RGQAFVIFKEVSSATNALRSMQGFPFYD----KPMRIQYAKT 88 (97)
T ss_dssp -----------------------------TTCEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECSS
T ss_pred -----------------------------CcEEEEEeCCHHHHHHHHHHhCCCEECC----cEEEEEEccC
Confidence 4699999999999999999999999999 5566665544
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.7e-12 Score=98.08 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCcceeee--eCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 107 ~~~~~l~V--~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
.+..+||| +||+.++++++|+++|.+||+|..+.|..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------------------------------------- 62 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------------------------------------- 62 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----------------------------------------
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----------------------------------------
Confidence 34578999 679999999999999999999999887643
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEF 236 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~ 236 (341)
+++|||+|.+.++|++|++.|||.++
T Consensus 63 --------------------------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 63 --------------------------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp --------------------------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred --------------------------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46999999999999999999999988
No 336
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-12 Score=100.02 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=67.8
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCe-eEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
.....+|||+|||.++++++|+++|.+||.| ..+.|+.+.. |..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----------------------g~~------------- 56 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----------------------GQG------------- 56 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----------------------SSC-------------
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----------------------CCc-------------
Confidence 3455899999999999999999999999999 8888887654 222
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++||+. |+..|.| ..|.|....
T Consensus 57 --------------------------~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i~v~~a~ 92 (114)
T 2cpy_A 57 --------------------------LGQALVQFKNEDDARKSERL-HRKKLNG----REAFVHVVT 92 (114)
T ss_dssp --------------------------SSCEEEECSSHHHHHHHGGG-CSEEETT----EEEEEEEEC
T ss_pred --------------------------ceEEEEEECCHHHHHHHHHh-CCCccCC----eEEEEEECC
Confidence 67999999999999999988 9999999 566665543
No 337
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.7e-12 Score=96.62 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=66.9
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCC-eeEEEEe-eCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
...+|||+|||.++++++|+++|.+||. |..+.+. .+.. +|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~---------------------~g~~-------------- 51 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD---------------------KMKN-------------- 51 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCT---------------------TTTT--------------
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCC---------------------CCCc--------------
Confidence 3479999999999999999999999998 9999987 4433 2222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcC--ccccccccccceEEEeeccC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~--g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|..|+..|| +..+.| ..+.|.....
T Consensus 52 -------------------------~g~afV~f~~~~~A~~A~~~l~~g~~~~~g----~~l~V~~a~~ 91 (109)
T 2dis_A 52 -------------------------RGFAFVEYESHRAAAMARRKLMPGRIQLWG----HQIAVDWAEP 91 (109)
T ss_dssp -------------------------CCEEEEEESSHHHHHHHHTTTTTCCSCBTT----BCCEEEESCS
T ss_pred -------------------------CcEEEEEecCHHHHHHHHHHhhCCCceecC----CeEEEEEcCC
Confidence 5799999999999999999996 589999 4566665543
No 338
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.5e-12 Score=95.47 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
.......+|||+|||.++++++|+++|.+|+ .+.++.+.. ++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~---------------------~~~~------------ 53 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRE---------------------TGSS------------ 53 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSS---------------------SCSE------------
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCC---------------------CCCc------------
Confidence 3445568999999999999999999999774 555665543 1222
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
+++|||+|.+.++|++||+.||+..+.| ..|.|.....+.
T Consensus 54 ---------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~a~~~~ 93 (102)
T 2fc8_A 54 ---------------------------KGFGFVDFNSEEDAKAAKEAMEDGEIDG----NKVTLDWAKPKG 93 (102)
T ss_dssp ---------------------------EEEEEEECSSHHHHHHHHHHHTTCEETT----EECEEEECCCCC
T ss_pred ---------------------------CcEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEEecCCC
Confidence 5699999999999999999999999999 567776665443
No 339
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.35 E-value=1.7e-12 Score=112.60 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=67.9
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhC--CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
...+|||+|||.++++++|+++|.+|| .|..|.|+.+.. +|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~---------------------tg~s-------------- 111 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA---------------------NGQS-------------- 111 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT---------------------TCCE--------------
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC---------------------CCcc--------------
Confidence 456899999999999999999999999 999999998865 3444
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
++||||+|.+.++|++||+.||+..|.|+ .|.|...
T Consensus 112 -------------------------kGfaFV~f~~~~~a~~Ai~~lng~~~~Gr----~l~V~~a 147 (229)
T 3q2s_C 112 -------------------------KGFALVGVGSEASSKKLMDLLPKRELHGQ----NPVVTPV 147 (229)
T ss_dssp -------------------------EEEEEEEESCTTHHHHHHTTSTTSCBTTB----CCEEEEC
T ss_pred -------------------------ceEEEEEECCHHHHHHHHHHcCCCeECCE----EeEEEEC
Confidence 56999999999999999999999999994 4565543
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=9.3e-12 Score=96.84 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=64.7
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEE
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFF 187 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~f 187 (341)
....|||+|||..+++++|+++|.+||+|..+.|... .
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~----------------------------------------- 61 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N----------------------------------------- 61 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S-----------------------------------------
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C-----------------------------------------
Confidence 3356789999999999999999999999999998642 2
Q ss_pred EEeecchhhHHhhhcccccccCCCce-EEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 188 IYFKCMRLSYFKHFRESYHNIFAGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 188 i~~~~~~~s~~~~~~~~~~~~~~~~~-gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
++ |||+|.+.++|..|++.|||..|.|.. +.+++.....
T Consensus 62 ------------------------Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak~ 101 (124)
T 2e5i_A 62 ------------------------GIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYARP 101 (124)
T ss_dssp ------------------------SEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCSC
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEecC
Confidence 45 999999999999999999999998842 4567665543
No 341
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.35 E-value=7.5e-13 Score=97.42 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=62.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.+|||+|||.++++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------------ 42 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRE---------------------TKKP------------------ 42 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSS---------------------SCCC------------------
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCC---------------------CCCc------------------
Confidence 4799999999999999999999999999999988765 2222
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.+ |.+|+..|||..++|+.
T Consensus 43 ---------------------~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 43 ---------------------KGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp ---------------------CEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred ---------------------ceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 579999999999 99999999999999954
No 342
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.34 E-value=9.5e-13 Score=98.98 Aligned_cols=75 Identities=16% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCC-chhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.......+|||+|||.++++++|+++|.+|| |..+.|..+. . +|++
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~---------------------~g~~----------- 60 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN---------------------PERL----------- 60 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT---------------------TCCC-----------
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc---------------------CCcc-----------
Confidence 3445568999999999999999999999999 9999998875 2 1222
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.++|.+|+ .|||..++|+.
T Consensus 61 ----------------------------~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 61 ----------------------------KGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ----------------------------CSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred ----------------------------CeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 579999999999999999 99999999954
No 343
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=2.8e-12 Score=95.52 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||..+++++|+++|.+||.|..+ ... +..
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~------------------------~~~------------- 52 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQD------------------------GKS------------- 52 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EET------------------------TEE-------------
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCC------------------------CCc-------------
Confidence 34456899999999999999999999999988776 111 111
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|.+|+..|||..+.| ..+.+.....
T Consensus 53 --------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~ 90 (96)
T 1fjc_A 53 --------------------------KGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYYTGE 90 (96)
T ss_dssp --------------------------EEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEECSS
T ss_pred --------------------------ceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEcCC
Confidence 5799999999999999999999999999 5677766543
No 344
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=97.81 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|.. .++.+.. +|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~---------------------~g~~--------------- 57 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR---------------------TGTN--------------- 57 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE---------------------EETT---------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC---------------------CCCc---------------
Confidence 34679999999999999999999999998876 4443322 1222
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|++|++ |||..+.| ..+.|.....
T Consensus 58 ------------------------~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V~~a~~ 94 (101)
T 1fj7_A 58 ------------------------RKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKLEKPKG 94 (101)
T ss_dssp ------------------------TTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEEECCSC
T ss_pred ------------------------CcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEEEEcCC
Confidence 5799999999999999998 99999999 5566665543
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.7e-12 Score=93.12 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=56.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+||.|..+ ..+..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~------------------------------------------ 43 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD------------------------------------------ 43 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS------------------------------------------
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC------------------------------------------
Confidence 3699999999999999999999999999987 33332
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
.+. +|||+|.+.++|++|+. |||..++|+
T Consensus 44 --------------------~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 44 --------------------KGV-FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp --------------------SCC-EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred --------------------CCc-EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 012 89999999999999999 999999994
No 346
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=7.2e-12 Score=97.95 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
..-..|||+||+..+++++|+++|.+||+|..+.|.....
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~---------------------------------------- 65 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN---------------------------------------- 65 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETT----------------------------------------
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCC----------------------------------------
Confidence 3446789999999999999999999999999998876433
Q ss_pred EEEeecchhhHHhhhcccccccCCCce-EEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~-gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
++ |||+|.+.++|..|++.|||..+.|.. +.+++...+.
T Consensus 66 -------------------------gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~--~~LrI~~ak~ 105 (130)
T 3zzy_A 66 -------------------------QFQALLQYADPVSAQHAKLSLDGQNIYNAC--CTLRIDFSKL 105 (130)
T ss_dssp -------------------------EEEEEEEESCHHHHHHHHHHHTTCEEETTE--EEEEEEECSC
T ss_pred -------------------------CcEEEEEECCHHHHHHHHHHcCCCeecCCC--cEEEEEecCC
Confidence 46 999999999999999999999998833 4566655543
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=9.7e-12 Score=103.40 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
......+|||+|||..+++++|+++|.+||.|..|.|..+.. |.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----------------------g~-------------- 127 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----------------------GR-------------- 127 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----------------------SS--------------
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----------------------CC--------------
Confidence 445568999999999999999999999999999999987654 22
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.+++|||+|.+.++|++|++.|||..++|+.
T Consensus 128 -------------------------~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 128 -------------------------SLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp -------------------------CSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred -------------------------EeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 2579999999999999999999999999943
No 348
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=98.85 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCC---eeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
.......+|||+|||.++++++|+++|.+||. |..+.|..+.. |++
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----------------------g~~--------- 54 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----------------------GKR--------- 54 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----------------------STT---------
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----------------------CCE---------
Confidence 34455689999999999999999999999887 89999987754 333
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|+|||+|.+.++|++||. +|+..++|+.
T Consensus 55 ------------------------------~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 55 ------------------------------RGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp ------------------------------CSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred ------------------------------eeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 5699999999999999999 9999999943
No 349
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=6.3e-12 Score=91.69 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=59.4
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHh----C-------CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCC
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGM 176 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~ 176 (341)
...+|||+|||.++++++|+++|.+| | .|..+.+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------------------------------- 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------------------------------- 52 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--------------------------------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--------------------------------
Confidence 45799999999999999999999999 8 8998888755
Q ss_pred ccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 177 FSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 177 ~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++|||+|.+.++|.+|+ .|||..+.|+
T Consensus 53 ----------------------------------kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 53 ----------------------------------KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp ----------------------------------SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred ----------------------------------CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 359999999999999999 9999999994
No 350
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.31 E-value=3.7e-12 Score=93.31 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=63.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEE
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFI 188 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi 188 (341)
..+|||+|||.++++++|+++|.+| +|..+.+. ..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~------------------------------------------ 39 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RN------------------------------------------ 39 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GG------------------------------------------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CC------------------------------------------
Confidence 4789999999999999999999999 99999885 22
Q ss_pred EeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 189 YFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 189 ~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
+++|||+|.+.++|++|++.|||..+.| ..+.+....
T Consensus 40 ----------------------~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 40 ----------------------KRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp ----------------------GTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred ----------------------CcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 4699999999999999999999999999 556665543
No 351
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=89.87 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=60.1
Q ss_pred ceeeeeCCCCCCCHHH----HHHHHHHhC-CeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 110 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~----l~~~f~~~G-~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
+.|||.|||..+++++ |+++|.+|| +|..+ .
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t-------------------------------------- 45 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T-------------------------------------- 45 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C--------------------------------------
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e--------------------------------------
Confidence 4499999999999887 558999995 99888 2
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCCC
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 254 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~r 254 (341)
.|+|||.|.+.++|..|++.|+|..+.| ..+++......+
T Consensus 46 --------------------------gG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v~~A~~~s 85 (96)
T 2diu_A 46 --------------------------GCSAILRFINQDSAERAQKRMENEDVFG----NRIIVSFTPKNR 85 (96)
T ss_dssp --------------------------TTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEEESSCCSC
T ss_pred --------------------------cCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEEEecCCCc
Confidence 2489999999999999999999999999 567776665443
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.30 E-value=3.5e-12 Score=90.35 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=60.2
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEe
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYF 190 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~ 190 (341)
+|||+|||.++++++|+++|.+||.|..+.+..+.. +|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------------------~~~~------------------- 40 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK---------------------TNKR------------------- 40 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC---------------------CSSS-------------------
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCCc-------------------
Confidence 589999999999999999999999999999987755 2222
Q ss_pred ecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 191 KCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 191 ~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+++|||+|.+.++|.+|++. ++..+.|+.
T Consensus 41 --------------------~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 41 --------------------RGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp --------------------CCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred --------------------CCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 56999999999999999985 888899954
No 353
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=99.40 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCe----eEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
....+|||+|||.++++++|+++|.+||.| ..+.|+.+.. |++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----------------------gr~----------- 67 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----------------------GRP----------- 67 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----------------------SCE-----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----------------------CCE-----------
Confidence 445799999999999999999999999975 6888887744 333
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
+++|||+|.+.++|++||+. |+..+.| .+|.|..
T Consensus 68 ----------------------------~G~aFV~F~~~~~A~~Al~~-~~~~l~g----R~i~V~~ 101 (123)
T 2dha_A 68 ----------------------------TGDAFVLFACEEYAQNALRK-HKDLLGK----RYIELFR 101 (123)
T ss_dssp ----------------------------EEEEEECCSSHHHHHHHHTT-TTEESSS----CEECCEE
T ss_pred ----------------------------eeEEEEEECCHHHHHHHHHh-CCCeeCC----eEEEEEE
Confidence 56999999999999999987 9999998 4555543
No 354
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.29 E-value=7.4e-12 Score=96.40 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=69.0
Q ss_pred ceeeeeCC----CCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 110 ~~l~V~nl----p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
..|||+|| |+.+++++|+++|.+||+|..+.+..|+. +|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~---------------------Tg~s-------------- 47 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN---------------------SALP-------------- 47 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT---------------------TCCE--------------
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC---------------------CCce--------------
Confidence 58999999 99999999999999999999999999998 6666
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecC----hhh----HHHHHH--hcCccccccccccceEEEeeccCC
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTS----YDD----MKYAIR--KLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~----~~~----a~~Ai~--~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+|+|||+|.+ +++ |.+||. .|||..|.| ..++|..++..
T Consensus 48 -------------------------lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~G----r~irV~ln~~g 96 (136)
T 2j8a_A 48 -------------------------LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMG----FKFEVILNKHS 96 (136)
T ss_dssp -------------------------EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETT----EEEEEEECCTT
T ss_pred -------------------------eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecC----cEEEEEECccc
Confidence 4599999996 444 789999 899999999 67888776653
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.28 E-value=8.9e-12 Score=99.95 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEE--------EEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcc
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS--------QVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFS 178 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~ 178 (341)
.+..+|||+|||..+++++|+++|.+||.|..+ .+... |.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------------------------g~-------- 90 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------------------------GR-------- 90 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------------------------TT--------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------------------------CC--------
Confidence 344799999999999999999999999998764 22221 11
Q ss_pred ccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 179 CLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 179 ~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
.+++|||+|.+.++|.+|+..|||..+.| ..+.|......
T Consensus 91 -------------------------------~~g~afV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~a~~~ 130 (143)
T 3egn_A 91 -------------------------------MKGQAFIGLPNEKAAAKALKEANGYVLFG----KPMVVQFARSA 130 (143)
T ss_dssp -------------------------------TEEEEEEECSSHHHHHHHHHHHTTBEETT----EECEEEECCCS
T ss_pred -------------------------------cccEEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 25799999999999999999999999999 56777666443
No 356
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.28 E-value=6.2e-12 Score=98.22 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCCcceeeeeCCCCCCCHHHHHHHHHHhCCee--EEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccc
Q 019418 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLY 181 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~ 181 (341)
.+.....+|||+|||.++++++|+++|.+| .|+ .|.|+.+.. |++
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----------------------Grs---------- 83 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----------------------GKI---------- 83 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----------------------SSS----------
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----------------------CCC----------
Confidence 344556889999999999999999999999 777 888887755 333
Q ss_pred cceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 182 RFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 182 ~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+|+|||+|.+.++|++||+. ++..+.|+.
T Consensus 84 -----------------------------rGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 84 -----------------------------TGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp -----------------------------CSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred -----------------------------ceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 57999999999999999985 779999953
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=1.6e-11 Score=90.17 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=34.1
Q ss_pred CCCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeC
Q 019418 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 144 (341)
Q Consensus 105 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 144 (341)
...+..+|||+|||.++++++|+++|.+||.|..+.|+.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 3345589999999999999999999999999999999875
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.26 E-value=9.2e-12 Score=93.78 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=61.1
Q ss_pred CCCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccccee
Q 019418 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRI 185 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~ 185 (341)
.....+|||+|||.++++++|+++|.+||.|..+.|..+.. |..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------------------g~~-------------- 49 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----------------------GVS-------------- 49 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----------------------SCE--------------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----------------------CCc--------------
Confidence 34457999999999999999999999999999999988754 222
Q ss_pred EEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 186 FFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 186 ~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
+++|||+|.+.++|++|+. ++..++|+
T Consensus 50 -------------------------~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 50 -------------------------KGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp -------------------------EEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred -------------------------cceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 5799999999999999998 77777773
No 359
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=5.4e-13 Score=103.15 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=67.7
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHhCCeeE--------EEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccc
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSC 179 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~ 179 (341)
...+|||+|||.++++++|+++|.+||.|.. +.|..+.. ++..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~---------------------~g~~-------- 56 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE---------------------TGKL-------- 56 (116)
Confidence 4479999999999999999999999999988 77776644 2222
Q ss_pred cccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 180 LYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 180 ~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|++|+..|||..+.| ..+.|.....+
T Consensus 57 -------------------------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 95 (116)
T 2lcw_A 57 -------------------------------KGEATVSFDDPPSAKAAIDWFDGKEFSG----NPIKVSFATRR 95 (116)
Confidence 5699999999999999999999999999 45666555433
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.25 E-value=2.3e-11 Score=94.59 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=64.1
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|| ++++++|+++|.+||.|..+.|...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~------------------------------------------ 72 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP------------------------------------------ 72 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT------------------------------------------
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC------------------------------------------
Confidence 45689999996 6999999999999999999988632
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
+++|||+|.+.++|.+||..|||..+.| ..+.|......
T Consensus 73 ------------------------kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~a~~~ 111 (121)
T 2bz2_A 73 ------------------------RNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIARKQ 111 (121)
T ss_dssp ------------------------TTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEECCSS
T ss_pred ------------------------CCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEEeCCC
Confidence 4699999999999999999999999999 55666655443
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.6e-12 Score=95.78 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....+|||+|||.++++++|+++|.+||.|. +.++.+.. +.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~---------------------~~----------------- 46 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE---------------------SK----------------- 46 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS---------------------SC-----------------
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC---------------------CC-----------------
Confidence 3457999999999999999999999999999 77766544 10
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhc
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKL 231 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l 231 (341)
.....+++|||+|.+.++|++||+.|
T Consensus 47 -------------------~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 47 -------------------SYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp -------------------CCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred -------------------CCCCcccEEEEEECCHHHHHHHHHhh
Confidence 00122679999999999999999998
No 362
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=87.54 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=62.8
Q ss_pred CCCEEEeCCCC----CCCCH----HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEE
Q 019418 5 SSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (341)
Q Consensus 5 ~~~~l~V~nLp----~~~t~----~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~ 76 (341)
+.-||+|.-++ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+||+ |||..++|+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 56788888877 34444 67899999999999999984 459999999999999999 999999999999
Q ss_pred EEEccCC
Q 019418 77 VELAHGG 83 (341)
Q Consensus 77 v~~~~~~ 83 (341)
|..+.+.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998753
No 363
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=3.6e-11 Score=92.47 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCCCEEEeCCCCCC-CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcC-HHHHHHHHHhcC--CceeCCeEEEEEE
Q 019418 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (341)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~-~e~A~~Ai~~ln--g~~i~g~~l~v~~ 79 (341)
.+.+.|||+||+.+ +++++|+++|++||+|..|.+... ...|||.|.+ +++|..|+..|| +..|.|..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46889999999999 999999999999999999999764 2379999999 899999999994 7889999988887
Q ss_pred cc
Q 019418 80 AH 81 (341)
Q Consensus 80 ~~ 81 (341)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=6.9e-11 Score=99.66 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhc--CCceeCCeEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCCHHHHHHHHH
Q 019418 54 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 131 (341)
Q Consensus 54 ~~e~A~~Ai~~l--ng~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~ 131 (341)
+.+.+..|+... ....+.+....|......+ .+.... .........+|||+|||.++++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p-~p~~~~----------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP-LPEVTD----------EYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC-CCCCCH----------HHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC-Ccccch----------hhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 667888888876 5556666555555542111 000000 000112347899999999999999999999
Q ss_pred HhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhhhcccccccCCC
Q 019418 132 RAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAG 211 (341)
Q Consensus 132 ~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~ 211 (341)
+||.|..+.|..+.. |.. +
T Consensus 132 ~~G~v~~v~i~~~~~----------------------~~~---------------------------------------k 150 (193)
T 2voo_A 132 DKGQVLNIQMRRTLH----------------------KAF---------------------------------------K 150 (193)
T ss_dssp TSCCEEEEEEEECTT----------------------CCE---------------------------------------E
T ss_pred cCCCEEEEEEEECCC----------------------CCc---------------------------------------c
Confidence 999999999988654 222 5
Q ss_pred ceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 212 MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 212 ~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
|+|||+|.+.++|.+|+..++ ..++| ..+.|..
T Consensus 151 G~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~ 183 (193)
T 2voo_A 151 GSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILF 183 (193)
T ss_dssp EEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEE
T ss_pred cEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEE
Confidence 799999999999999998765 48888 4455543
No 365
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.6e-11 Score=89.80 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeC
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD 144 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 144 (341)
..+|||+|||.++++++|+++|.+||.|..+.|..+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 479999999999999999999999999999998765
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.7e-10 Score=86.49 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=63.4
Q ss_pred CCcceeeeeCCCCCCC-----------HHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCC
Q 019418 107 RSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGG 175 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~-----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~ 175 (341)
.+..+|+|.||..... +++|+++|.+||.|..+.|. +..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~----------------------------- 62 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH----------------------------- 62 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC-----------------------------
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC-----------------------------
Confidence 4457899999954432 57999999999999999663 322
Q ss_pred CccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccCC
Q 019418 176 MFSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 253 (341)
Q Consensus 176 ~~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~~ 253 (341)
.+|+|||+|.+.++|.+|+..|||..++| ..+.+......
T Consensus 63 ----------------------------------~~G~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~v~~a~~~ 102 (112)
T 2dit_A 63 ----------------------------------PDGVASVSFRDPEEADYCIQTLDGRWFGG----RQITAQAWDGT 102 (112)
T ss_dssp ----------------------------------TTCEEEEECSCHHHHHHHHHHSTTCEETT----EECEEEECCSC
T ss_pred ----------------------------------CCEEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEEeCCC
Confidence 15799999999999999999999999999 56777665543
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.15 E-value=2.3e-10 Score=86.52 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=63.8
Q ss_pred CcceeeeeCCCC-----CCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 108 SDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 108 ~~~~l~V~nlp~-----~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
+..+|+|.||.. +-.+++|+++|.+||.|..+.|..++.. ++.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--------------------~~~------------ 54 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--------------------PDD------------ 54 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--------------------CTT------------
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--------------------CCC------------
Confidence 346899999963 2368999999999999999999887530 011
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
.+|+|||+|.+.++|.+|+..|||+.+.| ..+.+...
T Consensus 55 ---------------------------~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G----r~i~v~~a 91 (105)
T 2pe8_A 55 ---------------------------EAVRIFLEFERVESAIKAVVDLNGRYFGG----RVVKACFY 91 (105)
T ss_dssp ---------------------------TSEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred ---------------------------CcEEEEEEECCHHHHHHHHHHHCCCEECC----cEEEEEEc
Confidence 26799999999999999999999999999 45666544
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.11 E-value=1.2e-10 Score=100.65 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCcceeeeeCCCCCC---------CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCC
Q 019418 106 RRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGM 176 (341)
Q Consensus 106 ~~~~~~l~V~nlp~~~---------~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~ 176 (341)
.....+|||+|||..+ ++++|+++|.+||+|..+.|+..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------------------------------- 178 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------------------------------- 178 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--------------------------------
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--------------------------------
Confidence 4456899999999998 79999999999999999999754
Q ss_pred ccccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccc
Q 019418 177 FSCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEF 236 (341)
Q Consensus 177 ~~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~ 236 (341)
+++|||+|.+.++|+.|+++|+|..|
T Consensus 179 ----------------------------------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 179 ----------------------------------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp ----------------------------------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ----------------------------------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45999999999999999999999999
No 369
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3e-10 Score=82.26 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=61.3
Q ss_pred CCCEEEeCCCCCC-----CCH----HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEE
Q 019418 5 SSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (341)
Q Consensus 5 ~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l 75 (341)
|.-||+|.-++.. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+||+ |||..++|+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 6779999988743 333 568899999999999999843 39999999999999999 99999999999
Q ss_pred EEEEcc
Q 019418 76 RVELAH 81 (341)
Q Consensus 76 ~v~~~~ 81 (341)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998764
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=9e-10 Score=83.25 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=62.2
Q ss_pred cceeeeeCC--CCCCC--------HHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcc
Q 019418 109 DYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFS 178 (341)
Q Consensus 109 ~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~ 178 (341)
...|.|.|+ |.++. .++|++.|.+||.|..+.|+.+.. ++
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~---------------------~~--------- 54 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD---------------------GV--------- 54 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT---------------------TB---------
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC---------------------CC---------
Confidence 368899997 33443 368999999999999999987754 00
Q ss_pred ccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 179 CLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 179 ~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
...++|++||+|.+.++|.+|+..|||+.++| ..|.+...
T Consensus 55 ----------------------------~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G----R~i~v~~~ 94 (105)
T 3v4m_A 55 ----------------------------EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN----RVVVTKYC 94 (105)
T ss_dssp ----------------------------CCTTTTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEE
T ss_pred ----------------------------CcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC----CEEEEEEe
Confidence 00125799999999999999999999999999 45665544
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=8.2e-10 Score=100.60 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCcceeeeeC--CCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 106 ~~~~~~l~V~n--lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
..+..+|||+| |+..+++++|+++|.+||+|..+.+.. .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~------------------------------------- 55 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--N------------------------------------- 55 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--T-------------------------------------
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--C-------------------------------------
Confidence 34457999999 578999999999999999999887754 2
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccc
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFR 237 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~ 237 (341)
++||||+|.+.++|++||+.|||+++-
T Consensus 56 ---------------------------kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 56 ---------------------------KPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp ---------------------------CSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred ---------------------------CCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 569999999999999999999999884
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.94 E-value=3.6e-09 Score=81.00 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=59.7
Q ss_pred CcceeeeeCCCCCCC----------HHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCc
Q 019418 108 SDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMF 177 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~ 177 (341)
+..+|.|.|+-.... +++|++.|.+||.|..+.|..+..
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~------------------------------- 54 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA------------------------------- 54 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCT-------------------------------
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCC-------------------------------
Confidence 346788888643322 347899999999999999876543
Q ss_pred cccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 178 SCLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 178 ~~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
+|++||+|.+.++|.+|+..|||+.++| ..|.+...
T Consensus 55 ---------------------------------~G~~fV~f~~~e~A~~Ai~~lnG~~f~G----R~i~v~~~ 90 (114)
T 3s6e_A 55 ---------------------------------QGNVYVKCPSIAAAIAAVNALHGRWFAG----KMITAAYV 90 (114)
T ss_dssp ---------------------------------TCCEEEECSSHHHHHHHHHHHTTCEETT----EECEEEEE
T ss_pred ---------------------------------cEEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEE
Confidence 5799999999999999999999999999 45655544
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.4e-09 Score=82.27 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCCcceeeeeCCCCC-CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 104 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 104 ~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
.....+..|+|+||+.+ ++.++|+++|.+||+|.+|.+..+..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------------------------------------ 56 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------------------------------------ 56 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------------------------------------
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------------------------------------
Confidence 45566789999999999 99999999999999999999988877
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecC-hhhHHHHHHhcC--ccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNA 239 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~-~~~a~~Ai~~l~--g~~~~g~ 239 (341)
.|||.|.+ .++|..|+++|| +..|.|.
T Consensus 57 ------------------------------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 57 ------------------------------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp ------------------------------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ------------------------------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 89999999 899999999994 6778884
No 374
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=3.6e-09 Score=81.52 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=62.2
Q ss_pred cceeeeeCCCC--CC---CHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccc
Q 019418 109 DYRVLVTGLPS--SA---SWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRF 183 (341)
Q Consensus 109 ~~~l~V~nlp~--~~---~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~ 183 (341)
..+|+|.|+-. ++ -+++|++.|.+||.|..+.|+.+.... ..++.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~-----------------~~~~~------------- 69 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGE-----------------EEDAE------------- 69 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESS-----------------STTCE-------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCc-----------------ccCCc-------------
Confidence 46899999742 22 268999999999999999999875400 00011
Q ss_pred eeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 184 RIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 184 ~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
++|++||+|.+.++|.+|+..|||+.++| ..|.+...
T Consensus 70 --------------------------~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G----R~i~v~~~ 106 (118)
T 3ue2_A 70 --------------------------IIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 106 (118)
T ss_dssp --------------------------EEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEEE
T ss_pred --------------------------ceEEEEEEECCHHHHHHHHHHHCCCEECC----cEEEEEEc
Confidence 14699999999999999999999999999 45665544
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=2.8e-09 Score=91.80 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=63.9
Q ss_pred CCEEEeCCCC-----CCCCHHHHHHHhhccCCEeEEEeec-------CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCe
Q 019418 6 SRTLYVGNLP-----GDTRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (341)
Q Consensus 6 ~~~l~V~nLp-----~~~t~~~l~~~F~~~G~I~~i~i~~-------~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~ 73 (341)
+..+.+.|+- ..-.+++|.+.|++||+|.+|.|.. +++++|++||+|.+.++|++|++.|||..++|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555552 2346788999999999999999953 347789999999999999999999999999999
Q ss_pred EEEEEEcc
Q 019418 74 RLRVELAH 81 (341)
Q Consensus 74 ~l~v~~~~ 81 (341)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 376
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.88 E-value=6.5e-10 Score=83.90 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=53.6
Q ss_pred eeCCCCCCCHHHHHHHH------------HHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccc
Q 019418 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLY 181 (341)
Q Consensus 114 V~nlp~~~~~~~l~~~f------------~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~ 181 (341)
+.|||..+++++|++.| .+||.|..+.|..+.. +.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----------------------~~----------- 66 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----------------------DH----------- 66 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----------------------SS-----------
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----------------------CC-----------
Confidence 55677777777766666 9999999999987653 12
Q ss_pred cceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 182 RFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 182 ~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.+|+|||+|.+.++|.+|+..|||..++|+.
T Consensus 67 ----------------------------~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 67 ----------------------------LVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp ----------------------------SEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ----------------------------ccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 2579999999999999999999999999943
No 377
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=6.4e-08 Score=72.14 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHH
Q 019418 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYF 198 (341)
Q Consensus 119 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~ 198 (341)
..+++++|+++|.+||+|..+.|... .
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~-~---------------------------------------------------- 53 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSK-K---------------------------------------------------- 53 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESS-S----------------------------------------------------
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccC-C----------------------------------------------------
Confidence 56899999999999999999998742 2
Q ss_pred hhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeeccC
Q 019418 199 KHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 252 (341)
Q Consensus 199 ~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~~ 252 (341)
+++|||+|.+.++|..||+.+++ +.| ..+.|.....
T Consensus 54 ------------rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~ 89 (100)
T 2d9o_A 54 ------------PGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEG 89 (100)
T ss_dssp ------------SSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSC
T ss_pred ------------CCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccC
Confidence 57999999999999999999665 445 4466655433
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.5e-07 Score=69.46 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhcc-----CCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEE
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~ 79 (341)
..++|-|-|||-.+++..|+.+.+++ |.|..|.+..+ -+=|+|+|.+...|-+|.-.|+|..|.|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 47899999999999999999999999 99999999754 45799999999999999988999999999999975
Q ss_pred c
Q 019418 80 A 80 (341)
Q Consensus 80 ~ 80 (341)
.
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1e-06 Score=64.56 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhc-----cCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-----~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
...++|.|.|||+.+.++.|.-+|+. =|+|..|... .+-|+|+|.+.+.|+..|+. ..+.|++..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 45689999999999999999999987 2599999886 37899999999999999873 4788999999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeeCCCCCCC
Q 019418 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSAS 122 (341)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~ 122 (341)
...+.. ..+|++.+|++.++
T Consensus 80 P~~~~~------------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPPRA------------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp ECCCCC------------------------CCCCCCCSCCCCCC
T ss_pred cCCCCC------------------------cceEeeecCCCCCC
Confidence 755432 26899999999876
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=3.5e-07 Score=65.85 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=56.2
Q ss_pred cceeeeeCCCC----CCCH----HHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccc
Q 019418 109 DYRVLVTGLPS----SASW----QDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCL 180 (341)
Q Consensus 109 ~~~l~V~nlp~----~~~~----~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~ 180 (341)
+.+|+|.-+|. .+-. .+|.+.|.+||+|..+++..+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------------------------------------ 50 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------------------------------------ 50 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------------------------------------
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------------------------------------
Confidence 35777776662 2333 579999999999999998764
Q ss_pred ccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeecc
Q 019418 181 YRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 251 (341)
Q Consensus 181 ~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~~ 251 (341)
.+||+|.+.++|.+||+ |||..+.| ..++|....
T Consensus 51 --------------------------------~~fVtF~d~~sAlaAi~-mnG~~v~G----r~LkV~lkt 84 (91)
T 2dnr_A 51 --------------------------------KMWVTFLEGSSALNVLS-LNGKELLN----RTITIALKS 84 (91)
T ss_dssp --------------------------------SEEEEESSHHHHHHGGG-GTTCEETT----EEEEEEECC
T ss_pred --------------------------------CEEEEECChHHHHHHHh-cCCeEeCC----eEEEEEeCC
Confidence 47999999999999998 99999999 567776553
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=1.1e-06 Score=63.62 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=57.3
Q ss_pred CcceeeeeCCCCC-----CCH----HHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcc
Q 019418 108 SDYRVLVTGLPSS-----ASW----QDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFS 178 (341)
Q Consensus 108 ~~~~l~V~nlp~~-----~~~----~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~ 178 (341)
++.+|+|.-++.. +-. .+|.+.|.+||+|..+++..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---------------------------------- 59 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---------------------------------- 59 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----------------------------------
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----------------------------------
Confidence 3468988887643 222 468999999999999998765
Q ss_pred ccccceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 179 CLYRFRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 179 ~~~~~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
.+||+|.+.++|.+||+ |||..+.| ..++|...
T Consensus 60 ----------------------------------~~fVtF~d~~sAl~AI~-ldG~~v~G----r~L~V~~k 92 (95)
T 1ufw_A 60 ----------------------------------QMLVTFADSHSALSVLD-VDGMKVKG----RAVKISGP 92 (95)
T ss_dssp ----------------------------------EEEEECSCSHHHHHHHH-GGGSEETT----EEEEEECC
T ss_pred ----------------------------------cEEEEEcChHHHHHHHh-cCCeeeCC----eEEEEecc
Confidence 48999999999999998 99999999 66777654
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=7.3e-06 Score=70.15 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEEeecchhhHHhh
Q 019418 121 ASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIYFKCMRLSYFKH 200 (341)
Q Consensus 121 ~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~~~~~~~s~~~~ 200 (341)
-.+++|.+.|.+||+|..+.|..+..+ ...++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~-----------------~~~~~~------------------------------ 173 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQG-----------------EEEDAE------------------------------ 173 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECC-----------------SSTTCC------------------------------
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCC-----------------cccCcC------------------------------
Confidence 346789999999999999999866440 000112
Q ss_pred hcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 201 FRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 201 ~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
++|++||+|.+.++|.+||..|||+.++| ..|.+...
T Consensus 174 ---------~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~ 210 (222)
T 3dxb_A 174 ---------IIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 210 (222)
T ss_dssp ---------EEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEEC
T ss_pred ---------ceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEc
Confidence 25799999999999999999999999999 45655544
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.5e-05 Score=58.57 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCCCEEEeCCCCCCC-C----HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEE
Q 019418 4 RSSRTLYVGNLPGDT-R----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~-t----~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~ 78 (341)
.-.++|+|.||+..+ + .+.++++|..|+++........ -.=..|.|.++++|.+|-..|++..++|+.|+|-
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 346789999998865 3 2578999999998888777532 3357999999999999999999999999999999
Q ss_pred EccCC
Q 019418 79 LAHGG 83 (341)
Q Consensus 79 ~~~~~ 83 (341)
++++.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99843
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=8.9e-05 Score=54.74 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=61.1
Q ss_pred CcceeeeeCCCCCCCHHHHHHHHHHh-----CCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCcccccc
Q 019418 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYR 182 (341)
Q Consensus 108 ~~~~l~V~nlp~~~~~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~ 182 (341)
...+|-+-|||..+++..|+.++.++ |.|+.+.+..+..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------------------------------------ 63 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------------------------------------ 63 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------------------------------------
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------------------------------------
Confidence 34789999999999999999999999 9999999998866
Q ss_pred ceeEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccc
Q 019418 183 FRIFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 239 (341)
Q Consensus 183 ~~~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~ 239 (341)
-|+|+|.+...|.+|.=.|+|.+|.|+
T Consensus 64 ------------------------------GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 64 ------------------------------GAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp ------------------------------EEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred ------------------------------ceEEEEccchhhHHHHhhcCCeeecCe
Confidence 689999999999999999999999983
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=6e-05 Score=54.49 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=54.6
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec-----CCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~-----~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
++|.|.+||+++||+++.+.+..+.++....... ......-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998776555532 12334679999999999999999999988753
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.71 E-value=0.00019 Score=54.28 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=60.0
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCC-eEEEEEEcc
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 81 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g-~~l~v~~~~ 81 (341)
..+-|.|-+.|+.. ...|...|++||+|.+.... ...++-.|.|.+..+|++||. .||..|.| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 46778999999885 77888899999999998873 236799999999999999999 59999985 667777753
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.64 E-value=0.00012 Score=52.83 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=44.3
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
..++| ++|+.+...||.++|+.||.| .|..+. -.-|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999965 333332 3489999999999999998753
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.52 E-value=0.00014 Score=52.69 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
.++| ++|+.+...||.++|+.||.| .|..+. -.-|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999944 444432 3479999999999999999764
No 389
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.07 E-value=0.0011 Score=50.84 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=56.4
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEE-eec---------------CC-CCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~-i~~---------------~~-~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
.....|.|-+.|+. ....|.+.|++||.|.+-. +.. .. ...++..|+|.++.+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 35677888888766 4566778899999998732 110 00 135688999999999999999 59
Q ss_pred CceeCCeEEEEEEcc
Q 019418 67 GYNFDGYRLRVELAH 81 (341)
Q Consensus 67 g~~i~g~~l~v~~~~ 81 (341)
|..|.|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888875
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.00089 Score=48.61 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=50.6
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeec---C--CCCCcEEEEEEcCHHHHHHHHHhcCCceeCC
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~---~--~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g 72 (341)
-+-+|.|..||+.+||+++.+.+..+=++....... + .....-|||.|.+.+++....+.++|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356899999999999999988877664442221111 1 1223568999999999999999999988753
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.0012 Score=48.53 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=55.7
Q ss_pred ceeeeeCCCCCC-C----HHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccce
Q 019418 110 YRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFR 184 (341)
Q Consensus 110 ~~l~V~nlp~~~-~----~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~ 184 (341)
++|+|+||+.++ . .+.++++|.+|+++....+.+.-.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-------------------------------------- 47 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-------------------------------------- 47 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--------------------------------------
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--------------------------------------
Confidence 689999998764 2 257799999999887777665543
Q ss_pred eEEEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccce
Q 019418 185 IFFIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 244 (341)
Q Consensus 185 ~~fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 244 (341)
-..|.|.+.++|.+|-..||+..+.|..-+.|
T Consensus 48 ----------------------------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 48 ----------------------------RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp ----------------------------EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ----------------------------EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46899999999999999999999999653333
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0073 Score=44.16 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=29.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHHHH---h--CCeeEEEEee
Q 019418 109 DYRVLVTGLPSSASWQDLKDHMRR---A--GDVCFSQVFR 143 (341)
Q Consensus 109 ~~~l~V~nlp~~~~~~~l~~~f~~---~--G~i~~~~i~~ 143 (341)
..+|.|.|||+++.++.|.-+|+. - |+|..++...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~ 47 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG 47 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC
Confidence 469999999999999999999997 2 3788777654
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.31 E-value=0.002 Score=60.63 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=43.3
Q ss_pred CCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHh
Q 019418 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64 (341)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ 64 (341)
..+.|+|. .|..+++.+|.+.|++||+|.++.+-.+ ..-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHhc
Confidence 45789997 7999999999999999999999988643 246999999999999988653
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.25 E-value=0.02 Score=41.38 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.4
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCCee
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGDVC 137 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~i~ 137 (341)
.||+-++|+++...||.++|..||.|.
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~ 43 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQ 43 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCC
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEE
Confidence 444449999999999999999999543
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.15 E-value=0.035 Score=39.87 Aligned_cols=73 Identities=14% Similarity=0.306 Sum_probs=54.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeEEEE
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIFFIY 189 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~fi~ 189 (341)
.+|.|.+||+.++++++.+.+....++.......... ..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~--------------s~--------------------------- 40 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--------------SL--------------------------- 40 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--------------SS---------------------------
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc--------------CC---------------------------
Confidence 4789999999999999999999887665554433322 00
Q ss_pred eecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCcccccccc
Q 019418 190 FKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 190 ~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
+. ..-..++|.|.+.+++..-.+.++|..+.+.+
T Consensus 41 ---------------~~--~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 41 ---------------YP--HMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp ---------------TT--CCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred ---------------CC--CcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 00 01236899999999999999999999887654
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.11 E-value=0.015 Score=43.79 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=55.1
Q ss_pred CCcceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhHhhhhccCCCCccccccceeE
Q 019418 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIREAGRILGGGMFSCLYRFRIF 186 (341)
Q Consensus 107 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~g~~~~~~~~~~~~~ 186 (341)
....-|.|-+.|+.. ...|...|++||+|+.......
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------------------------------------------ 58 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------------------------------------------ 58 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------------------------------------------
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------------------------------------------
Confidence 345788999999885 6677888999999998876322
Q ss_pred EEEeecchhhHHhhhcccccccCCCceEEEEecChhhHHHHHHhcCccccccccccceEEEee
Q 019418 187 FIYFKCMRLSYFKHFRESYHNIFAGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 249 (341)
Q Consensus 187 fi~~~~~~~s~~~~~~~~~~~~~~~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~ 249 (341)
.+.-.|.|.+..+|++|+.+ ||..+.|. .-|.+..
T Consensus 59 ------------------------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~---~mIGV~p 93 (119)
T 1wwh_A 59 ------------------------GNWMHIRYQSKLQARKALSK-DGRIFGES---IMIGVKP 93 (119)
T ss_dssp ------------------------SSEEEEEESSHHHHHHHHTT-TTCEETTT---EECEEEE
T ss_pred ------------------------CCeEEEEeCCHHHHHHHHHh-CCeEecCC---EEEEEEE
Confidence 24789999999999999965 99988763 3444443
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.65 E-value=0.021 Score=41.31 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred eeeeeCCCCCCCHHHHHHHHHHhCC
Q 019418 111 RVLVTGLPSSASWQDLKDHMRRAGD 135 (341)
Q Consensus 111 ~l~V~nlp~~~~~~~l~~~f~~~G~ 135 (341)
.||+-++|+++.-.||.++|..||.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg 31 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN 31 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC
Confidence 4444499999999999999999993
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.54 E-value=0.057 Score=50.74 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=29.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCeeEEEEeeCCc
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 146 (341)
..|+|. .|..+++.+|.++|.+||.|..+.+..+..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g 89 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG 89 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC
Confidence 679997 799999999999999999999999887543
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.02 E-value=0.18 Score=36.45 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.9
Q ss_pred eEEEEecChhhHHHHHHhcCcccccccc
Q 019418 213 TGIVDYTSYDDMKYAIRKLDRSEFRNAF 240 (341)
Q Consensus 213 ~gfV~f~~~~~a~~Ai~~l~g~~~~g~~ 240 (341)
.|+|.|.+.+++..-.+.++|..+-+..
T Consensus 55 RAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 55 RAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 6899999999999999999999887655
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.24 E-value=0.26 Score=47.13 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=45.0
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
..++|+ +|..+...+|.++|+.||.| +|.... ...|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 467776 99999999999999999965 444432 4579999999999999999875
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.89 E-value=0.62 Score=35.56 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=25.1
Q ss_pred CceEEEEecChhhHHHHHHhcCccccccccccceEEEeec
Q 019418 211 GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 250 (341)
Q Consensus 211 ~~~gfV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~~~~~~ 250 (341)
.+-..|+|.+..+|.+|+ ..||+.+.| .-|.+..+
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G----~mIGV~Py 96 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNG----VLLGVIPY 96 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETT----EECEEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCc----EEEEEEEC
Confidence 456688888888888888 458888887 45555444
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.47 E-value=3.8 Score=28.70 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCCCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 019418 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (341)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~l 65 (341)
..+|-|-|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++...|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHH
Confidence 467889999999999999998888888866677776 678999999999999999765
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.89 E-value=2.7 Score=28.44 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred EEEeC-CCCCCCCHHHHHHHhhccC-----CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 019418 8 TLYVG-NLPGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (341)
Q Consensus 8 ~l~V~-nLp~~~t~~~l~~~F~~~G-----~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~l~v~~~~ 81 (341)
+|||. +--..++..+|..++..-+ .|-.|.|. ..|.||+-.. +.|..+++.|++..+.|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45653 2234577788888776544 56677776 5699999865 56888999999999999999988764
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.78 E-value=12 Score=35.56 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.4
Q ss_pred ceeeeeCCCCCCCHHHHHHHHHHhCCe
Q 019418 110 YRVLVTGLPSSASWQDLKDHMRRAGDV 136 (341)
Q Consensus 110 ~~l~V~nlp~~~~~~~l~~~f~~~G~i 136 (341)
..++|+ +|..+...+|.++|+.||.|
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v 466 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI 466 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE
Confidence 445555 99999999999999999954
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.75 E-value=12 Score=29.93 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=35.6
Q ss_pred CEEEeCCCCC-C--------CCHHHHHHHh--hccCCEeEEEeecCCCCCcEEEEEEcCHH
Q 019418 7 RTLYVGNLPG-D--------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDYR 56 (341)
Q Consensus 7 ~~l~V~nLp~-~--------~t~~~l~~~F--~~~G~I~~i~i~~~~~~~g~afV~F~~~e 56 (341)
-++.|-|+|. . ....+|.+.| ..|.++.-..+-....+.|+|.|.|..--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 3677889987 2 3457899977 99988754444334445899999998643
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=57.32 E-value=35 Score=23.91 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 019418 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (341)
Q Consensus 32 ~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng 67 (341)
+|.+|.++. ..+||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 466776653 4799999999999999889877665
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.64 E-value=41 Score=23.39 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=40.2
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
-|+=.+...++..+|.+.+++ || +|..|..........-|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 455556779999999999877 55 67777765544344569999998888876544
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=44.87 E-value=4.1 Score=31.80 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHhhccCCEeEEEeecCCCCCcEEEEEEc
Q 019418 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (341)
Q Consensus 21 ~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~ 53 (341)
+|+.++|...|.|+..... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5666778888888766554 899999976
No 409
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=42.37 E-value=56 Score=22.63 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai 62 (341)
-|+=.++..+|..+|.+.+++ || +|..|.........--|||.+...++|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 455566789999999998876 56 7777776554433456999998887765543
No 410
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.74 E-value=17 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=14.2
Q ss_pred CCEeEEEeecCCCCCcEEEEEEcCH
Q 019418 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (341)
Q Consensus 31 G~I~~i~i~~~~~~~g~afV~F~~~ 55 (341)
|+|..|... +..|||.|.|-
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTT
T ss_pred eEEEEEecC-----CcEEEEEEccC
Confidence 566666443 77999999864
No 411
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.16 E-value=28 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.9
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i 38 (341)
..-+.|+|||++++..-|..++.. +.+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346799999999999999999988 66655444
No 412
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=33.80 E-value=20 Score=24.16 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=14.3
Q ss_pred CCEeEEEeecCCCCCcEEEEEEcCH
Q 019418 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (341)
Q Consensus 31 G~I~~i~i~~~~~~~g~afV~F~~~ 55 (341)
|+|..|... +..|||.|.|.
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEeccC-----CCEEEEEEcCC
Confidence 566665443 77999999874
No 413
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.39 E-value=22 Score=23.32 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=9.7
Q ss_pred CCcEEEEEEcCH
Q 019418 44 PPGYAFLEFEDY 55 (341)
Q Consensus 44 ~~g~afV~F~~~ 55 (341)
..+.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 378999999863
No 414
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=32.25 E-value=17 Score=31.40 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCEEEeCCCCCCCCHHHHHHHhhccCCEeEEEee
Q 019418 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (341)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~ 39 (341)
...+.|+|||++++..-|..++.....+..+.++
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 3467999999999999999999876566555543
No 415
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.42 E-value=1e+02 Score=23.54 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=38.2
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
-|+=-+...++..+|.+.++. || +|..|.........--|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 344456778999999988876 45 67777765433334569999988877766433
No 416
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=29.65 E-value=42 Score=32.91 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHh----hccCCEeEEEeecC--CCCCcEEEEEEcCHHHHHHHHHhcC
Q 019418 13 NLPGDTRMREVEDLF----YKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRD 66 (341)
Q Consensus 13 nLp~~~t~~~l~~~F----~~~G~I~~i~i~~~--~~~~g~afV~F~~~e~A~~Ai~~ln 66 (341)
..+.+.+--||..+| ..+|-|+++.|... .....+++|.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 345555555788888 47899999999653 3345678999999999999987653
No 417
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=28.83 E-value=1.1e+02 Score=23.53 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=38.1
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
-|+=-+...++..||.+.++. || +|..|.........--|||.+....+|.....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 344456678999999988876 45 67777765433334569999988777766533
No 418
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.45 E-value=12 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.6
Q ss_pred CCcEEEEEEcCH
Q 019418 44 PPGYAFLEFEDY 55 (341)
Q Consensus 44 ~~g~afV~F~~~ 55 (341)
.+..|||.|.|.
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 378999999864
No 419
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=27.84 E-value=95 Score=24.05 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
-|+=-+...++..+|.+.++. || +|..|.........--|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344456678899999888876 45 67777765544345569999998877766543
No 420
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.68 E-value=1.3e+02 Score=23.42 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred EEeCCCCCCCCHHHHHHHhhc-cC-CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHH
Q 019418 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~ 63 (341)
-|+=.++..+|..||.+.++. || +|..|.........--|||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 345556778999999998876 56 77777765432234569999988877655443
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.29 E-value=1.4e+02 Score=23.65 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=36.0
Q ss_pred ceeeeeCCCCC---------CCHHHHHHHH--HHhCCeeEEEEeeCCchhhhhhhhhcccccchhhhH
Q 019418 110 YRVLVTGLPSS---------ASWQDLKDHM--RRAGDVCFSQVFRDRGELHWRMLRFWGGEVNWGEIR 166 (341)
Q Consensus 110 ~~l~V~nlp~~---------~~~~~l~~~f--~~~G~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
+.+.|.|+|.. .+.++|++.| ..|..+.-..+.-...-.+.+++.|...-..|.++.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 56778888862 3457899977 888776655555444434456777766555554433
No 422
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=25.93 E-value=59 Score=29.89 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=41.2
Q ss_pred EEeCCCCCCCC----HHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeCCeE
Q 019418 9 LYVGNLPGDTR----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (341)
Q Consensus 9 l~V~nLp~~~t----~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~g~~ 74 (341)
-+||||+.-.. ...+.++..+||+|..+++- +.-+|...+++.|+.++.. ++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~~-~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLIK-KGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHTT-TTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 47888864321 35677888999999888773 3557778899999999864 444454443
No 423
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.84 E-value=72 Score=23.06 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.3
Q ss_pred CEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 019418 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (341)
Q Consensus 32 ~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~ 68 (341)
.|.+|... ...+||-|||=.++.++..|++.+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46676554 446999999999999999998766543
No 424
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=25.59 E-value=1.9e+02 Score=20.90 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.2
Q ss_pred CCcEEEEEEcCHH-----HHHHHHHhcCC
Q 019418 44 PPGYAFLEFEDYR-----DAEDAIRGRDG 67 (341)
Q Consensus 44 ~~g~afV~F~~~e-----~A~~Ai~~lng 67 (341)
.+||.||++...+ ++-..+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6899999998877 67777776655
No 425
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=25.13 E-value=43 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.3
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEEEe
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i 38 (341)
..+.|+|||+.++...|..++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999999999876444444433
No 426
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=24.95 E-value=40 Score=30.73 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred EeCCCCCC---CCHHHHHHHhhccCCEeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCceeC
Q 019418 10 YVGNLPGD---TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (341)
Q Consensus 10 ~V~nLp~~---~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~~i~ 71 (341)
+||||..- -....+.++..+||+|..+++- +.-+|...+++.++.++.. ++..+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~~-~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALVT-HGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHTT-TGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHHh-CChhhc
Confidence 46776432 2345577888999999888773 2345666788888888752 344343
No 427
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.22 E-value=36 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhhc
Q 019418 8 TLYVGNLPGDTRMREVEDLFYK 29 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~ 29 (341)
.++|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
No 428
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.20 E-value=21 Score=30.39 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=25.7
Q ss_pred EEEeCCCCCCCCHHHHHHHhhccCCEeEEEee
Q 019418 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (341)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~i~i~ 39 (341)
-..|+|||++++...|..++...+.+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 45899999999999999999876666555443
No 429
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.51 E-value=44 Score=21.24 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=13.6
Q ss_pred CCEeEEEeecCCCCCcEEEEEEcCH
Q 019418 31 GPIVDIDLKIPPRPPGYAFLEFEDY 55 (341)
Q Consensus 31 G~I~~i~i~~~~~~~g~afV~F~~~ 55 (341)
|+|..|... ...|+|.|.+.
T Consensus 22 GtI~~V~~~-----~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSA-----REVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEEecC-----CCEEEEEEcCC
Confidence 566555433 66899999864
No 430
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.83 E-value=1.6e+02 Score=22.46 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=27.1
Q ss_pred EeEEEeecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 019418 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (341)
Q Consensus 33 I~~i~i~~~~~~~g~afV~F~~~e~A~~Ai~~lng~ 68 (341)
|.+|.++. ..+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 66776653 36999999999999998999877764
No 431
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.45 E-value=66 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=29.6
Q ss_pred HHHHHh--hccCCEeEEEeecCCCC--CcEEEEEEcCHHHHHHHHH
Q 019418 22 EVEDLF--YKYGPIVDIDLKIPPRP--PGYAFLEFEDYRDAEDAIR 63 (341)
Q Consensus 22 ~l~~~F--~~~G~I~~i~i~~~~~~--~g~afV~F~~~e~A~~Ai~ 63 (341)
+|..+| +.+|-|+++.+.....+ ...+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 345666 46899999999663333 3467899999888776543
No 432
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.11 E-value=43 Score=28.19 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.7
Q ss_pred CEEEeCCCCCCCCHHHHHHHhhccCCEeEE
Q 019418 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDI 36 (341)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~i 36 (341)
..+.|+|||++++..-|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 458899999999999999999865444443
No 433
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=21.09 E-value=76 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCHHHHHHHhhccCCEeEEEeecCCCCCcEEE
Q 019418 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAF 49 (341)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~i~i~~~~~~~g~af 49 (341)
.+++.|.++|+.+|+|+.-.+. -||||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEE
Confidence 4678899999999999887775 55665
Done!