Query 019419
Match_columns 341
No_of_seqs 115 out of 130
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 97.4 0.00062 1.3E-08 73.9 9.1 22 173-194 495-516 (1102)
2 KOG1924 RhoA GTPase effector D 97.3 0.0011 2.4E-08 72.0 10.1 27 168-194 483-509 (1102)
3 PF06005 DUF904: Protein of un 96.0 0.085 1.8E-06 42.0 9.6 60 133-192 6-65 (72)
4 COG3883 Uncharacterized protei 95.4 0.13 2.9E-06 50.0 10.1 70 125-194 25-94 (265)
5 PF07106 TBPIP: Tat binding pr 95.1 0.067 1.5E-06 47.1 6.7 61 129-194 77-137 (169)
6 PF06156 DUF972: Protein of un 95.1 0.17 3.6E-06 43.0 8.6 55 133-187 3-57 (107)
7 PRK11637 AmiB activator; Provi 95.0 0.25 5.4E-06 49.4 11.3 64 130-193 46-116 (428)
8 PRK10884 SH3 domain-containing 94.7 0.24 5.1E-06 46.2 9.3 64 131-194 93-160 (206)
9 COG3883 Uncharacterized protei 94.4 0.3 6.5E-06 47.6 9.7 64 129-192 36-99 (265)
10 PRK13169 DNA replication intia 94.3 0.31 6.8E-06 41.8 8.5 55 133-187 3-57 (110)
11 PF08172 CASP_C: CASP C termin 94.2 0.4 8.6E-06 45.9 9.9 68 130-197 5-124 (248)
12 COG4026 Uncharacterized protei 94.0 0.26 5.6E-06 47.7 8.3 62 133-194 137-198 (290)
13 PF08614 ATG16: Autophagy prot 93.9 0.56 1.2E-05 42.4 10.0 62 133-194 111-172 (194)
14 PRK15422 septal ring assembly 93.9 0.71 1.5E-05 37.9 9.3 58 133-190 6-70 (79)
15 PF07888 CALCOCO1: Calcium bin 93.8 0.52 1.1E-05 50.0 10.8 97 10-112 9-114 (546)
16 PRK10884 SH3 domain-containing 93.6 0.44 9.6E-06 44.4 8.8 66 129-194 98-167 (206)
17 KOG4603 TBP-1 interacting prot 93.2 0.41 8.9E-06 44.7 7.8 63 127-189 82-146 (201)
18 PRK11637 AmiB activator; Provi 92.8 0.74 1.6E-05 46.1 9.7 54 134-187 64-117 (428)
19 PF11932 DUF3450: Protein of u 92.7 0.77 1.7E-05 42.9 9.0 61 134-194 38-98 (251)
20 PRK09039 hypothetical protein; 92.4 1.4 3E-05 43.7 10.9 64 130-193 115-178 (343)
21 TIGR02894 DNA_bind_RsfA transc 92.3 0.71 1.5E-05 42.2 8.0 56 138-193 90-145 (161)
22 KOG1923 Rac1 GTPase effector F 92.0 0.39 8.4E-06 52.7 6.9 40 149-188 193-232 (830)
23 PRK13729 conjugal transfer pil 91.6 0.99 2.1E-05 47.2 9.2 66 121-189 55-120 (475)
24 PF06005 DUF904: Protein of un 91.6 1.7 3.8E-05 34.6 8.6 52 138-189 4-55 (72)
25 COG3074 Uncharacterized protei 91.4 2.3 5.1E-05 34.6 9.1 28 133-160 6-33 (79)
26 PF08826 DMPK_coil: DMPK coile 91.1 3.1 6.7E-05 32.5 9.3 58 136-193 2-59 (61)
27 PF13851 GAS: Growth-arrest sp 90.3 2.1 4.6E-05 39.5 9.2 56 133-188 29-84 (201)
28 PF00170 bZIP_1: bZIP transcri 90.2 5.2 0.00011 30.1 9.7 41 148-188 22-62 (64)
29 PF15290 Syntaphilin: Golgi-lo 90.2 3 6.6E-05 41.4 10.5 49 133-183 70-118 (305)
30 PF02183 HALZ: Homeobox associ 89.4 1.4 3E-05 32.3 5.8 41 149-189 2-42 (45)
31 PF08614 ATG16: Autophagy prot 89.3 4.6 9.9E-05 36.6 10.3 51 133-183 132-182 (194)
32 PF10473 CENP-F_leu_zip: Leuci 89.0 3.3 7.1E-05 36.9 9.0 40 156-195 63-102 (140)
33 PRK04406 hypothetical protein; 88.9 4 8.6E-05 32.7 8.5 54 131-184 4-57 (75)
34 PF07106 TBPIP: Tat binding pr 88.8 1.7 3.7E-05 38.3 7.1 60 138-197 72-133 (169)
35 PF12718 Tropomyosin_1: Tropom 88.7 3.9 8.4E-05 36.0 9.2 55 135-189 11-65 (143)
36 PF06810 Phage_GP20: Phage min 88.7 2.7 5.8E-05 37.5 8.3 51 133-183 15-68 (155)
37 PF04859 DUF641: Plant protein 88.5 1.7 3.6E-05 38.5 6.7 53 130-182 79-131 (131)
38 smart00338 BRLZ basic region l 88.5 7.8 0.00017 29.2 9.5 40 149-188 23-62 (65)
39 PF00170 bZIP_1: bZIP transcri 88.1 2.6 5.5E-05 31.8 6.7 33 148-180 29-61 (64)
40 COG2433 Uncharacterized conser 88.0 3.8 8.3E-05 44.3 10.2 44 129-172 420-463 (652)
41 PF08317 Spc7: Spc7 kinetochor 87.7 4.5 9.7E-05 39.5 9.8 58 131-188 209-266 (325)
42 PF14197 Cep57_CLD_2: Centroso 87.5 9.4 0.0002 30.2 9.8 59 131-189 5-63 (69)
43 PF04156 IncA: IncA protein; 87.3 5.8 0.00013 35.1 9.5 64 130-193 87-150 (191)
44 smart00338 BRLZ basic region l 86.8 3 6.5E-05 31.5 6.4 37 146-182 27-63 (65)
45 PF06156 DUF972: Protein of un 86.7 6.1 0.00013 33.6 8.9 49 146-194 9-57 (107)
46 PF04102 SlyX: SlyX; InterPro 86.6 4.4 9.5E-05 31.6 7.4 39 148-186 14-52 (69)
47 PRK10803 tol-pal system protei 86.5 5.7 0.00012 37.9 9.6 60 130-189 39-98 (263)
48 PRK00888 ftsB cell division pr 86.4 2.2 4.7E-05 35.9 6.0 42 148-189 30-71 (105)
49 PF05008 V-SNARE: Vesicle tran 86.3 3.2 7E-05 32.0 6.5 54 129-182 23-77 (79)
50 PF06637 PV-1: PV-1 protein (P 86.1 4.3 9.4E-05 41.9 8.9 10 287-296 418-427 (442)
51 PF12718 Tropomyosin_1: Tropom 85.7 4.9 0.00011 35.4 8.1 36 132-167 22-57 (143)
52 PRK13729 conjugal transfer pil 85.6 2.6 5.5E-05 44.3 7.3 57 130-186 68-124 (475)
53 COG4026 Uncharacterized protei 85.5 5 0.00011 39.1 8.7 13 284-296 261-273 (290)
54 KOG4005 Transcription factor X 85.5 5.6 0.00012 39.0 9.0 52 142-193 94-145 (292)
55 KOG2264 Exostosin EXT1L [Signa 85.1 4.3 9.4E-05 44.1 8.8 67 131-197 85-152 (907)
56 COG4942 Membrane-bound metallo 85.1 8.3 0.00018 40.1 10.5 63 131-193 38-107 (420)
57 PF12777 MT: Microtubule-bindi 85.0 6.6 0.00014 38.6 9.5 62 133-194 230-291 (344)
58 PHA01732 proline-rich protein 85.0 1.8 4E-05 36.4 4.8 8 283-290 43-50 (94)
59 PF14282 FlxA: FlxA-like prote 84.6 3.6 7.7E-05 34.5 6.5 21 130-150 18-38 (106)
60 PF12329 TMF_DNA_bd: TATA elem 84.5 12 0.00026 29.7 9.1 37 157-193 31-67 (74)
61 KOG0946 ER-Golgi vesicle-tethe 84.0 3.7 8E-05 45.9 7.8 56 130-185 642-697 (970)
62 KOG1962 B-cell receptor-associ 83.8 3.7 8.1E-05 39.1 6.9 58 136-193 149-206 (216)
63 PF10224 DUF2205: Predicted co 83.7 8.7 0.00019 31.4 8.1 47 142-188 20-66 (80)
64 PF04977 DivIC: Septum formati 83.5 4.1 8.8E-05 30.8 5.8 35 149-183 21-55 (80)
65 PF02403 Seryl_tRNA_N: Seryl-t 83.2 8.7 0.00019 31.3 8.1 60 130-189 28-90 (108)
66 PRK09039 hypothetical protein; 83.1 8.6 0.00019 38.2 9.5 62 131-192 123-184 (343)
67 KOG1962 B-cell receptor-associ 83.1 4.3 9.2E-05 38.7 7.0 49 134-182 161-209 (216)
68 PRK13169 DNA replication intia 82.8 12 0.00027 32.2 9.0 48 146-193 9-56 (110)
69 COG4467 Regulator of replicati 82.7 7.9 0.00017 33.8 7.8 52 133-184 3-54 (114)
70 PF05266 DUF724: Protein of un 82.6 9.9 0.00021 35.2 9.0 57 133-189 112-175 (190)
71 PHA02562 46 endonuclease subun 82.5 6.7 0.00015 39.8 8.6 8 289-296 517-524 (562)
72 TIGR02449 conserved hypothetic 82.5 20 0.00044 28.4 9.4 50 134-183 3-52 (65)
73 PF04111 APG6: Autophagy prote 82.3 11 0.00023 37.2 9.7 13 287-299 249-261 (314)
74 PF00957 Synaptobrevin: Synapt 82.2 23 0.00049 28.0 10.6 57 130-186 2-58 (89)
75 KOG0250 DNA repair protein RAD 82.2 9 0.0002 43.8 10.1 65 130-194 660-724 (1074)
76 PF09738 DUF2051: Double stran 82.2 11 0.00023 37.5 9.6 64 130-193 83-153 (302)
77 PF00038 Filament: Intermediat 82.1 22 0.00049 33.6 11.5 31 148-178 219-249 (312)
78 PF05667 DUF812: Protein of un 82.1 17 0.00037 39.1 11.7 62 133-194 330-391 (594)
79 KOG0946 ER-Golgi vesicle-tethe 81.9 7.2 0.00016 43.7 9.1 97 125-221 640-761 (970)
80 PF11559 ADIP: Afadin- and alp 81.9 17 0.00036 31.4 9.8 46 148-193 62-107 (151)
81 COG5185 HEC1 Protein involved 81.9 6.3 0.00014 42.0 8.2 63 129-191 293-355 (622)
82 PRK02119 hypothetical protein; 81.8 14 0.00029 29.5 8.4 37 148-184 19-55 (73)
83 PF11544 Spc42p: Spindle pole 81.3 19 0.00042 29.5 9.2 51 131-181 5-55 (76)
84 PF11932 DUF3450: Protein of u 81.3 14 0.00031 34.5 9.8 54 141-194 38-91 (251)
85 PF04102 SlyX: SlyX; InterPro 81.2 8.8 0.00019 29.9 7.0 50 144-193 3-52 (69)
86 PF09304 Cortex-I_coil: Cortex 80.7 7.2 0.00016 33.7 6.9 57 136-192 14-70 (107)
87 TIGR03185 DNA_S_dndD DNA sulfu 80.7 8.9 0.00019 40.7 9.1 45 148-192 424-468 (650)
88 PF08581 Tup_N: Tup N-terminal 80.3 24 0.00052 28.7 9.4 56 135-193 15-70 (79)
89 PRK00295 hypothetical protein; 80.3 17 0.00036 28.5 8.3 48 131-185 5-52 (68)
90 PF07888 CALCOCO1: Calcium bin 80.2 12 0.00026 40.1 9.8 22 151-172 170-191 (546)
91 PF12777 MT: Microtubule-bindi 80.2 5.5 0.00012 39.2 6.9 63 128-190 218-280 (344)
92 PF08317 Spc7: Spc7 kinetochor 80.1 10 0.00022 37.1 8.7 36 154-189 211-246 (325)
93 PHA03211 serine/threonine kina 80.1 1.8 3.8E-05 44.0 3.6 28 264-291 51-79 (461)
94 PF04156 IncA: IncA protein; 79.6 19 0.0004 31.9 9.5 57 133-189 104-160 (191)
95 PF10805 DUF2730: Protein of u 79.4 17 0.00037 30.5 8.6 53 133-185 37-91 (106)
96 PRK00295 hypothetical protein; 79.2 17 0.00037 28.5 8.1 50 144-193 4-53 (68)
97 KOG4005 Transcription factor X 79.2 10 0.00022 37.3 8.1 57 133-189 92-148 (292)
98 PF06103 DUF948: Bacterial pro 78.9 23 0.0005 28.1 8.9 63 131-193 19-81 (90)
99 PF11559 ADIP: Afadin- and alp 78.8 21 0.00045 30.8 9.3 52 142-193 49-100 (151)
100 KOG4571 Activating transcripti 78.8 24 0.00052 35.3 10.7 34 149-182 252-285 (294)
101 PHA02562 46 endonuclease subun 78.8 9.8 0.00021 38.6 8.4 9 133-141 308-316 (562)
102 PF03962 Mnd1: Mnd1 family; I 78.6 15 0.00033 33.7 8.8 61 133-194 71-131 (188)
103 PF12325 TMF_TATA_bd: TATA ele 78.4 8.9 0.00019 33.3 6.9 9 209-217 105-113 (120)
104 KOG4343 bZIP transcription fac 78.1 18 0.0004 39.1 10.3 92 94-189 245-339 (655)
105 smart00787 Spc7 Spc7 kinetocho 78.0 19 0.00041 35.7 9.8 37 150-186 223-259 (312)
106 PF10473 CENP-F_leu_zip: Leuci 78.0 20 0.00043 32.1 9.0 43 130-172 2-44 (140)
107 PRK02793 phi X174 lysis protei 77.8 21 0.00045 28.3 8.2 47 131-184 8-54 (72)
108 PF10146 zf-C4H2: Zinc finger- 77.8 17 0.00037 34.7 9.1 28 133-160 3-30 (230)
109 PF10146 zf-C4H2: Zinc finger- 77.8 22 0.00047 34.0 9.9 53 136-188 51-103 (230)
110 COG4942 Membrane-bound metallo 77.8 15 0.00032 38.2 9.4 50 133-182 54-103 (420)
111 PF09304 Cortex-I_coil: Cortex 77.4 37 0.00081 29.4 10.2 49 144-192 8-56 (107)
112 PF07889 DUF1664: Protein of u 77.2 20 0.00044 31.5 8.8 60 133-192 49-108 (126)
113 COG1579 Zn-ribbon protein, pos 77.2 21 0.00045 34.5 9.6 43 151-193 88-130 (239)
114 PF05308 Mito_fiss_reg: Mitoch 77.1 9.3 0.0002 36.9 7.3 17 168-184 124-140 (253)
115 PRK04325 hypothetical protein; 77.0 22 0.00048 28.3 8.2 48 131-185 9-56 (74)
116 PF15397 DUF4618: Domain of un 77.0 22 0.00049 34.7 9.8 90 130-225 62-159 (258)
117 PF05266 DUF724: Protein of un 76.9 18 0.00038 33.6 8.8 17 178-194 150-166 (190)
118 KOG2675 Adenylate cyclase-asso 76.8 1.6 3.5E-05 45.5 2.2 10 289-298 266-275 (480)
119 PF04977 DivIC: Septum formati 76.8 8.2 0.00018 29.1 5.6 34 152-185 17-50 (80)
120 PF04880 NUDE_C: NUDE protein, 76.6 4.4 9.5E-05 37.2 4.7 45 134-182 3-47 (166)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.6 30 0.00064 29.7 9.5 7 215-221 123-129 (132)
122 PRK00736 hypothetical protein; 76.3 21 0.00045 28.0 7.8 48 130-184 4-51 (68)
123 PRK00846 hypothetical protein; 76.0 18 0.0004 29.4 7.6 53 127-186 9-61 (77)
124 smart00787 Spc7 Spc7 kinetocho 75.9 35 0.00076 33.8 11.1 58 135-192 162-223 (312)
125 COG1579 Zn-ribbon protein, pos 75.7 25 0.00054 34.0 9.7 12 285-296 174-185 (239)
126 PRK03918 chromosome segregatio 75.4 16 0.00034 39.4 9.2 12 284-295 830-841 (880)
127 PRK04325 hypothetical protein; 75.3 20 0.00043 28.5 7.5 50 144-193 8-57 (74)
128 PF00261 Tropomyosin: Tropomyo 75.3 27 0.00059 32.6 9.7 64 130-193 140-217 (237)
129 PHA01750 hypothetical protein 75.2 11 0.00024 30.5 6.1 33 151-183 41-73 (75)
130 PF12325 TMF_TATA_bd: TATA ele 75.2 29 0.00062 30.2 9.1 21 136-156 35-55 (120)
131 KOG0995 Centromere-associated 74.7 18 0.00038 39.1 9.1 24 149-172 298-321 (581)
132 KOG0250 DNA repair protein RAD 74.6 19 0.00042 41.3 9.8 63 133-195 353-423 (1074)
133 PRK00736 hypothetical protein; 74.6 27 0.00059 27.4 8.0 49 145-193 5-53 (68)
134 PF00038 Filament: Intermediat 74.5 28 0.00061 33.0 9.7 63 133-195 84-150 (312)
135 PF09738 DUF2051: Double stran 74.5 18 0.00039 35.9 8.6 58 132-189 78-135 (302)
136 PF04949 Transcrip_act: Transc 74.5 39 0.00084 31.1 10.0 33 157-189 110-142 (159)
137 PF07200 Mod_r: Modifier of ru 74.2 44 0.00096 28.7 10.1 12 215-226 96-107 (150)
138 PF14197 Cep57_CLD_2: Centroso 74.1 21 0.00045 28.2 7.3 52 143-194 3-54 (69)
139 PF09726 Macoilin: Transmembra 74.0 19 0.00041 39.5 9.4 33 164-196 543-575 (697)
140 PRK02793 phi X174 lysis protei 73.9 23 0.0005 28.0 7.5 52 143-194 6-57 (72)
141 PF05377 FlaC_arch: Flagella a 73.8 16 0.00034 28.3 6.3 25 149-173 4-28 (55)
142 PF05667 DUF812: Protein of un 73.3 29 0.00063 37.4 10.4 60 130-189 320-379 (594)
143 PRK04406 hypothetical protein; 73.1 35 0.00077 27.3 8.5 46 144-189 10-55 (75)
144 PF01213 CAP_N: Adenylate cycl 72.9 1.1 2.5E-05 44.2 0.0 15 284-298 259-273 (312)
145 PF13851 GAS: Growth-arrest sp 72.8 14 0.00031 34.1 7.1 42 132-173 35-76 (201)
146 PF00769 ERM: Ezrin/radixin/mo 72.7 18 0.00039 34.4 8.0 62 133-194 35-96 (246)
147 PF07889 DUF1664: Protein of u 72.6 31 0.00067 30.4 8.7 61 133-193 63-123 (126)
148 PRK15422 septal ring assembly 72.6 29 0.00062 28.7 7.9 54 140-193 6-59 (79)
149 PF09728 Taxilin: Myosin-like 72.5 34 0.00074 33.7 10.0 68 130-197 21-88 (309)
150 KOG4657 Uncharacterized conser 72.5 40 0.00088 32.9 10.2 15 214-228 135-149 (246)
151 KOG3809 Microtubule-binding pr 72.5 21 0.00047 37.8 8.9 58 132-189 480-555 (583)
152 PF01166 TSC22: TSC-22/dip/bun 72.4 6.8 0.00015 30.7 4.1 30 153-182 15-44 (59)
153 KOG3433 Protein involved in me 72.2 47 0.001 31.6 10.3 62 133-194 83-144 (203)
154 KOG0964 Structural maintenance 72.2 19 0.00041 41.3 9.0 64 130-193 677-740 (1200)
155 TIGR00634 recN DNA repair prot 71.9 22 0.00049 37.1 9.1 18 208-225 368-385 (563)
156 TIGR03752 conj_TIGR03752 integ 71.8 31 0.00067 36.5 10.0 43 124-166 52-94 (472)
157 PF06657 Cep57_MT_bd: Centroso 71.8 28 0.00061 28.1 7.7 50 144-193 16-77 (79)
158 COG5185 HEC1 Protein involved 71.6 29 0.00062 37.2 9.6 24 174-197 331-354 (622)
159 TIGR02449 conserved hypothetic 71.5 39 0.00085 26.8 8.3 40 154-193 2-41 (65)
160 PRK02119 hypothetical protein; 71.5 26 0.00056 27.9 7.3 51 143-193 7-57 (73)
161 COG3074 Uncharacterized protei 71.0 47 0.001 27.3 8.7 40 154-193 20-59 (79)
162 COG2433 Uncharacterized conser 70.7 21 0.00045 39.0 8.6 21 19-39 301-322 (652)
163 PF03961 DUF342: Protein of un 70.6 32 0.0007 35.0 9.6 27 132-158 335-361 (451)
164 PRK12704 phosphodiesterase; Pr 70.5 50 0.0011 34.9 11.3 13 318-330 319-331 (520)
165 KOG0860 Synaptobrevin/VAMP-lik 70.1 52 0.0011 28.9 9.5 50 130-179 28-77 (116)
166 KOG4603 TBP-1 interacting prot 70.1 49 0.0011 31.3 9.9 66 132-197 80-147 (201)
167 PF02183 HALZ: Homeobox associ 70.0 23 0.00049 26.0 6.2 40 144-183 4-43 (45)
168 PRK10803 tol-pal system protei 70.0 15 0.00033 35.1 6.8 49 146-194 41-89 (263)
169 PF15619 Lebercilin: Ciliary p 69.9 28 0.0006 32.4 8.3 59 131-189 68-134 (194)
170 PF00261 Tropomyosin: Tropomyo 69.7 50 0.0011 30.9 10.0 57 133-189 129-192 (237)
171 PF10805 DUF2730: Protein of u 69.7 30 0.00064 29.0 7.7 57 137-193 34-92 (106)
172 TIGR02894 DNA_bind_RsfA transc 69.5 26 0.00057 32.3 7.9 35 156-190 101-135 (161)
173 PF02403 Seryl_tRNA_N: Seryl-t 69.2 40 0.00086 27.4 8.2 61 130-190 35-98 (108)
174 PRK00846 hypothetical protein; 69.1 42 0.00091 27.4 8.2 52 143-194 11-62 (77)
175 PRK11448 hsdR type I restricti 68.9 37 0.0008 39.2 10.6 64 130-193 148-211 (1123)
176 KOG0804 Cytoplasmic Zn-finger 68.7 26 0.00056 37.1 8.5 50 145-194 375-424 (493)
177 PF14916 CCDC92: Coiled-coil d 68.5 8.9 0.00019 30.0 4.0 34 137-170 2-39 (60)
178 PF05700 BCAS2: Breast carcino 68.5 52 0.0011 30.7 9.9 36 156-191 179-214 (221)
179 PRK05431 seryl-tRNA synthetase 68.2 26 0.00055 35.8 8.4 22 171-192 71-92 (425)
180 PF14662 CCDC155: Coiled-coil 68.2 44 0.00095 31.6 9.2 36 151-186 73-108 (193)
181 PF14282 FlxA: FlxA-like prote 68.2 52 0.0011 27.6 8.9 51 144-194 18-72 (106)
182 PF06810 Phage_GP20: Phage min 68.1 45 0.00097 29.9 9.0 66 132-197 28-99 (155)
183 TIGR02231 conserved hypothetic 68.1 42 0.00092 34.6 10.0 32 130-161 70-101 (525)
184 PF06120 Phage_HK97_TLTM: Tail 67.9 76 0.0016 31.7 11.3 32 133-164 76-107 (301)
185 KOG1853 LIS1-interacting prote 67.8 47 0.001 33.2 9.7 36 136-171 32-71 (333)
186 PF08826 DMPK_coil: DMPK coile 67.8 50 0.0011 25.8 8.0 30 156-185 29-58 (61)
187 PF10224 DUF2205: Predicted co 67.7 51 0.0011 27.0 8.4 48 146-193 17-64 (80)
188 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.6 47 0.001 28.5 8.7 32 159-190 59-90 (132)
189 TIGR03185 DNA_S_dndD DNA sulfu 67.6 29 0.00063 36.9 8.9 39 133-171 423-461 (650)
190 TIGR03319 YmdA_YtgF conserved 67.4 64 0.0014 34.1 11.2 10 321-330 316-325 (514)
191 PF08537 NBP1: Fungal Nap bind 67.3 28 0.0006 35.2 8.2 66 128-193 172-239 (323)
192 PRK00888 ftsB cell division pr 67.3 15 0.00033 30.8 5.6 34 153-186 28-61 (105)
193 PF03980 Nnf1: Nnf1 ; InterPr 67.1 35 0.00077 28.1 7.6 30 157-186 78-107 (109)
194 KOG0996 Structural maintenance 67.1 21 0.00046 41.5 8.1 90 133-225 937-1026(1293)
195 PRK11519 tyrosine kinase; Prov 67.0 56 0.0012 35.4 11.0 11 287-297 506-516 (719)
196 TIGR01554 major_cap_HK97 phage 67.0 30 0.00065 34.0 8.4 19 134-152 2-20 (378)
197 PF05911 DUF869: Plant protein 66.9 30 0.00066 38.5 9.1 59 129-187 587-645 (769)
198 TIGR03007 pepcterm_ChnLen poly 66.9 57 0.0012 33.0 10.5 32 130-161 253-291 (498)
199 PRK10869 recombination and rep 66.6 34 0.00073 36.1 9.1 18 208-225 363-380 (553)
200 PF09744 Jnk-SapK_ap_N: JNK_SA 66.6 48 0.001 30.1 8.9 35 159-193 89-123 (158)
201 PF15290 Syntaphilin: Golgi-lo 66.5 41 0.00088 33.8 9.0 60 130-189 74-140 (305)
202 PF03961 DUF342: Protein of un 66.2 33 0.00071 34.9 8.7 33 134-166 330-362 (451)
203 PF06818 Fez1: Fez1; InterPro 66.1 42 0.00092 31.9 8.7 65 126-190 5-69 (202)
204 COG1196 Smc Chromosome segrega 66.0 35 0.00076 38.9 9.7 51 132-182 377-427 (1163)
205 PF15358 TSKS: Testis-specific 65.7 57 0.0012 34.6 10.3 43 133-175 127-169 (558)
206 KOG0804 Cytoplasmic Zn-finger 65.6 41 0.0009 35.6 9.3 29 143-171 380-408 (493)
207 PF15369 KIAA1328: Uncharacter 65.5 34 0.00075 34.7 8.5 51 133-183 14-64 (328)
208 COG2919 Septum formation initi 65.5 17 0.00038 30.9 5.6 40 149-188 54-93 (117)
209 PF05278 PEARLI-4: Arabidopsis 65.1 60 0.0013 32.1 9.9 48 146-193 194-241 (269)
210 PF04849 HAP1_N: HAP1 N-termin 65.0 43 0.00092 33.6 9.0 43 151-193 212-254 (306)
211 PF10779 XhlA: Haemolysin XhlA 65.0 31 0.00068 26.8 6.5 43 151-193 5-47 (71)
212 PF05565 Sipho_Gp157: Siphovir 64.9 44 0.00095 29.8 8.3 51 135-185 37-87 (162)
213 PRK14127 cell division protein 64.8 48 0.001 28.6 8.2 31 153-183 38-68 (109)
214 PRK14127 cell division protein 64.7 22 0.00048 30.6 6.1 35 159-193 37-71 (109)
215 KOG1003 Actin filament-coating 64.4 33 0.00072 32.7 7.7 60 130-189 143-202 (205)
216 PRK11020 hypothetical protein; 64.4 17 0.00037 32.0 5.4 54 150-203 3-61 (118)
217 TIGR02209 ftsL_broad cell divi 64.2 28 0.0006 27.0 6.2 28 155-182 27-54 (85)
218 KOG4571 Activating transcripti 64.2 21 0.00046 35.6 6.6 59 130-189 227-285 (294)
219 KOG4797 Transcriptional regula 64.1 31 0.00066 30.4 6.8 41 139-179 49-94 (123)
220 KOG3215 Uncharacterized conser 63.4 51 0.0011 31.8 8.7 19 204-222 157-175 (222)
221 KOG0976 Rho/Rac1-interacting s 63.3 43 0.00093 38.2 9.3 54 129-182 97-150 (1265)
222 PRK02224 chromosome segregatio 63.3 52 0.0011 35.7 10.0 9 286-294 468-476 (880)
223 PF04728 LPP: Lipoprotein leuc 63.2 70 0.0015 24.9 8.6 28 139-166 4-31 (56)
224 KOG0161 Myosin class II heavy 63.1 45 0.00098 40.8 10.1 60 133-192 910-969 (1930)
225 PF12709 Kinetocho_Slk19: Cent 63.1 59 0.0013 27.3 8.1 39 151-189 33-72 (87)
226 PF13815 Dzip-like_N: Iguana/D 62.8 36 0.00079 28.7 7.1 39 150-188 78-116 (118)
227 KOG0161 Myosin class II heavy 62.7 48 0.001 40.5 10.3 80 133-213 1472-1551(1930)
228 PF04012 PspA_IM30: PspA/IM30 62.5 72 0.0016 29.0 9.4 9 206-214 164-172 (221)
229 PF14739 DUF4472: Domain of un 62.5 40 0.00086 29.2 7.2 37 137-173 3-49 (108)
230 PF09730 BicD: Microtubule-ass 62.4 37 0.0008 37.6 8.7 22 166-187 97-118 (717)
231 KOG1925 Rac1 GTPase effector F 62.0 7.5 0.00016 41.9 3.4 16 235-250 224-239 (817)
232 PRK09841 cryptic autophosphory 61.9 94 0.002 33.7 11.6 37 135-171 257-293 (726)
233 PF09755 DUF2046: Uncharacteri 61.8 1.1E+02 0.0024 30.9 11.1 20 144-163 105-124 (310)
234 PF10168 Nup88: Nuclear pore c 61.7 77 0.0017 35.0 10.9 11 95-105 512-522 (717)
235 PF04880 NUDE_C: NUDE protein, 61.7 12 0.00026 34.3 4.2 40 154-193 2-44 (166)
236 KOG1923 Rac1 GTPase effector F 61.7 13 0.00028 41.4 5.1 9 148-156 135-143 (830)
237 TIGR00414 serS seryl-tRNA synt 61.6 51 0.0011 33.6 9.1 18 133-150 39-56 (418)
238 PF10234 Cluap1: Clusterin-ass 61.5 67 0.0015 31.6 9.5 54 133-186 171-238 (267)
239 KOG3397 Acetyltransferases [Ge 61.5 14 0.00029 35.2 4.6 11 265-275 189-199 (225)
240 PF10205 KLRAQ: Predicted coil 61.4 32 0.00069 29.6 6.4 41 150-190 31-71 (102)
241 PF05278 PEARLI-4: Arabidopsis 61.4 1.2E+02 0.0025 30.2 11.0 14 137-150 148-161 (269)
242 cd00632 Prefoldin_beta Prefold 61.0 36 0.00077 28.0 6.5 33 149-181 67-99 (105)
243 PF11365 DUF3166: Protein of u 60.9 36 0.00077 28.9 6.6 46 148-193 4-49 (96)
244 PF04912 Dynamitin: Dynamitin 60.8 73 0.0016 31.9 9.9 69 126-194 290-364 (388)
245 PLN02678 seryl-tRNA synthetase 60.8 49 0.0011 34.5 8.9 17 134-150 43-59 (448)
246 PF15619 Lebercilin: Ciliary p 60.6 48 0.001 30.8 8.0 23 133-155 127-149 (194)
247 PRK08475 F0F1 ATP synthase sub 60.6 1E+02 0.0022 27.5 9.8 89 130-218 52-145 (167)
248 KOG4593 Mitotic checkpoint pro 60.6 65 0.0014 35.7 10.0 36 174-209 201-236 (716)
249 PF14662 CCDC155: Coiled-coil 60.4 71 0.0015 30.3 9.1 8 186-193 101-108 (193)
250 KOG0243 Kinesin-like protein [ 60.4 84 0.0018 36.4 11.2 22 146-167 449-470 (1041)
251 PF10226 DUF2216: Uncharacteri 60.4 41 0.0009 31.9 7.5 35 146-180 42-76 (195)
252 TIGR02209 ftsL_broad cell divi 60.0 34 0.00073 26.5 6.0 32 148-179 27-58 (85)
253 KOG0243 Kinesin-like protein [ 59.9 55 0.0012 37.8 9.6 26 130-155 447-472 (1041)
254 TIGR03017 EpsF chain length de 59.7 1.2E+02 0.0027 30.0 11.2 14 149-162 286-299 (444)
255 KOG2751 Beclin-like protein [S 59.7 40 0.00086 35.5 7.9 61 131-191 160-222 (447)
256 PF06008 Laminin_I: Laminin Do 59.5 98 0.0021 29.2 10.0 63 155-218 76-138 (264)
257 PF05529 Bap31: B-cell recepto 59.4 64 0.0014 29.0 8.4 24 170-193 158-181 (192)
258 PRK13182 racA polar chromosome 59.3 64 0.0014 29.6 8.5 58 133-194 87-146 (175)
259 KOG0964 Structural maintenance 58.9 68 0.0015 37.2 10.0 61 133-193 399-459 (1200)
260 PF05911 DUF869: Plant protein 58.8 50 0.0011 36.8 9.0 27 132-158 618-644 (769)
261 PF05701 WEMBL: Weak chloropla 58.5 94 0.002 32.6 10.6 60 137-196 294-360 (522)
262 PF05103 DivIVA: DivIVA protei 58.3 7.7 0.00017 32.1 2.2 18 170-187 57-74 (131)
263 PF07716 bZIP_2: Basic region 58.1 61 0.0013 23.8 6.7 16 169-184 35-50 (54)
264 KOG4001 Axonemal dynein light 58.0 62 0.0013 31.5 8.3 21 148-168 202-222 (259)
265 COG5178 PRP8 U5 snRNP spliceos 57.5 6.8 0.00015 45.8 2.2 19 320-340 66-84 (2365)
266 COG3352 FlaC Putative archaeal 57.3 1.1E+02 0.0025 28.1 9.6 40 129-168 70-109 (157)
267 PF05377 FlaC_arch: Flagella a 57.2 43 0.00092 25.9 5.9 38 141-178 3-40 (55)
268 KOG0996 Structural maintenance 57.1 69 0.0015 37.6 9.8 7 208-214 480-486 (1293)
269 KOG0288 WD40 repeat protein Ti 56.8 1.3E+02 0.0027 31.9 10.9 13 284-296 195-207 (459)
270 PRK14154 heat shock protein Gr 56.8 1.7E+02 0.0037 27.8 11.0 40 133-172 54-93 (208)
271 PRK04863 mukB cell division pr 56.8 60 0.0013 38.7 9.6 16 130-145 320-335 (1486)
272 PRK00106 hypothetical protein; 56.7 1.3E+02 0.0028 32.3 11.3 11 321-331 337-347 (535)
273 PF06637 PV-1: PV-1 protein (P 56.3 2.6E+02 0.0056 29.5 12.9 15 175-189 358-372 (442)
274 COG1340 Uncharacterized archae 56.3 1.4E+02 0.0031 29.9 10.8 14 131-144 138-151 (294)
275 PF10883 DUF2681: Protein of u 56.3 27 0.00059 29.1 5.0 35 159-193 23-57 (87)
276 COG1729 Uncharacterized protei 55.8 31 0.00067 33.8 6.1 47 147-194 58-104 (262)
277 cd00632 Prefoldin_beta Prefold 55.8 62 0.0013 26.6 7.1 30 134-163 66-95 (105)
278 KOG4643 Uncharacterized coiled 55.7 54 0.0012 38.0 8.6 47 130-176 183-229 (1195)
279 PF15035 Rootletin: Ciliary ro 55.6 1E+02 0.0022 28.4 9.2 60 130-189 59-118 (182)
280 KOG0980 Actin-binding protein 55.4 97 0.0021 35.5 10.4 25 147-171 412-436 (980)
281 TIGR02977 phageshock_pspA phag 54.9 1.3E+02 0.0029 27.8 9.9 21 148-168 55-75 (219)
282 PTZ00446 vacuolar sorting prot 54.8 1.1E+02 0.0024 28.7 9.3 86 107-194 4-102 (191)
283 PRK14160 heat shock protein Gr 54.8 66 0.0014 30.6 8.0 40 154-193 56-95 (211)
284 PF01486 K-box: K-box region; 54.7 85 0.0018 25.5 7.7 50 131-182 49-98 (100)
285 TIGR00219 mreC rod shape-deter 54.7 43 0.00093 32.5 6.9 18 168-185 93-110 (283)
286 KOG2264 Exostosin EXT1L [Signa 54.6 30 0.00065 38.0 6.3 73 136-210 81-156 (907)
287 PF09726 Macoilin: Transmembra 54.6 36 0.00079 37.3 7.1 61 133-193 427-494 (697)
288 PF10267 Tmemb_cc2: Predicted 54.5 92 0.002 32.2 9.5 30 130-159 211-240 (395)
289 COG5178 PRP8 U5 snRNP spliceos 54.5 9.2 0.0002 44.8 2.6 8 281-288 38-45 (2365)
290 PF07716 bZIP_2: Basic region 54.5 45 0.00098 24.4 5.5 29 151-179 24-52 (54)
291 PF10267 Tmemb_cc2: Predicted 54.4 80 0.0017 32.7 9.1 14 203-216 293-307 (395)
292 TIGR03752 conj_TIGR03752 integ 54.3 28 0.0006 36.9 5.9 47 144-190 58-104 (472)
293 KOG4593 Mitotic checkpoint pro 54.3 60 0.0013 36.0 8.5 48 146-193 276-326 (716)
294 KOG0483 Transcription factor H 54.3 36 0.00079 32.0 6.1 59 132-190 79-150 (198)
295 PRK14160 heat shock protein Gr 54.2 41 0.0009 31.9 6.5 28 146-173 55-82 (211)
296 PF12795 MscS_porin: Mechanose 54.1 1.3E+02 0.0028 28.0 9.8 67 128-194 75-141 (240)
297 PRK01156 chromosome segregatio 54.0 78 0.0017 34.7 9.5 9 286-294 845-853 (895)
298 PF13863 DUF4200: Domain of un 53.9 1.3E+02 0.0027 24.9 9.8 19 173-191 81-99 (126)
299 PF00769 ERM: Ezrin/radixin/mo 53.9 2.1E+02 0.0045 27.4 11.3 63 131-193 5-67 (246)
300 PF03962 Mnd1: Mnd1 family; I 53.8 63 0.0014 29.7 7.5 64 130-194 61-124 (188)
301 TIGR01843 type_I_hlyD type I s 53.8 1E+02 0.0023 29.7 9.4 16 178-193 208-223 (423)
302 PF05103 DivIVA: DivIVA protei 53.4 6.9 0.00015 32.4 1.2 33 133-165 27-59 (131)
303 PF13094 CENP-Q: CENP-Q, a CEN 53.3 1.2E+02 0.0026 26.5 9.0 45 133-177 29-73 (160)
304 PF04728 LPP: Lipoprotein leuc 53.2 1.1E+02 0.0023 23.9 8.1 36 148-183 6-41 (56)
305 PHA03011 hypothetical protein; 53.2 1.3E+02 0.0028 26.4 8.7 61 133-193 59-119 (120)
306 KOG0978 E3 ubiquitin ligase in 53.0 75 0.0016 35.3 9.0 13 133-145 526-538 (698)
307 PF03233 Cauli_AT: Aphid trans 52.8 65 0.0014 29.8 7.3 55 131-189 104-158 (163)
308 KOG0963 Transcription factor/C 52.8 1.8E+02 0.0038 32.1 11.6 42 148-189 299-340 (629)
309 PF07439 DUF1515: Protein of u 52.6 1.6E+02 0.0035 25.8 9.6 58 133-193 10-67 (112)
310 KOG4196 bZIP transcription fac 52.6 66 0.0014 29.0 7.1 27 167-193 75-101 (135)
311 PF10481 CENP-F_N: Cenp-F N-te 52.5 71 0.0015 32.1 8.0 43 152-194 60-102 (307)
312 PRK10636 putative ABC transpor 52.2 60 0.0013 34.5 8.1 15 94-108 479-493 (638)
313 KOG0709 CREB/ATF family transc 52.2 26 0.00057 37.0 5.3 55 137-191 264-318 (472)
314 KOG0612 Rho-associated, coiled 52.1 69 0.0015 37.7 8.9 57 132-188 466-523 (1317)
315 PRK13922 rod shape-determining 52.1 42 0.00091 31.6 6.3 21 163-183 73-93 (276)
316 PF11382 DUF3186: Protein of u 52.0 49 0.0011 32.4 6.9 48 142-189 29-76 (308)
317 PF15188 CCDC-167: Coiled-coil 52.0 65 0.0014 26.8 6.6 49 146-194 13-64 (85)
318 PF15233 SYCE1: Synaptonemal c 51.9 1.2E+02 0.0026 27.4 8.6 35 133-167 22-56 (134)
319 PF15397 DUF4618: Domain of un 51.7 1E+02 0.0022 30.3 8.9 84 131-214 38-137 (258)
320 PTZ00454 26S protease regulato 51.7 53 0.0011 33.4 7.3 32 130-161 14-45 (398)
321 PRK13923 putative spore coat p 51.7 80 0.0017 29.3 7.8 37 157-193 109-145 (170)
322 smart00435 TOPEUc DNA Topoisom 51.7 81 0.0018 32.7 8.6 49 99-158 256-304 (391)
323 PF05529 Bap31: B-cell recepto 51.6 95 0.0021 27.9 8.2 7 182-188 177-183 (192)
324 PF13805 Pil1: Eisosome compon 51.6 52 0.0011 32.5 6.9 23 171-193 170-192 (271)
325 TIGR00606 rad50 rad50. This fa 51.5 1.2E+02 0.0025 35.3 10.7 42 131-172 970-1011(1311)
326 PF12128 DUF3584: Protein of u 51.5 75 0.0016 36.6 9.2 12 94-105 582-593 (1201)
327 PF09789 DUF2353: Uncharacteri 51.4 71 0.0015 32.2 8.0 28 168-195 191-218 (319)
328 COG1842 PspA Phage shock prote 51.4 54 0.0012 31.2 6.9 45 149-193 96-140 (225)
329 PF07989 Microtub_assoc: Micro 51.3 1.3E+02 0.0027 24.2 8.8 55 135-189 4-59 (75)
330 TIGR01005 eps_transp_fam exopo 51.3 1.1E+02 0.0024 32.9 10.0 94 131-224 288-403 (754)
331 PF15254 CCDC14: Coiled-coil d 51.3 88 0.0019 35.3 9.2 46 144-189 433-485 (861)
332 KOG3119 Basic region leucine z 51.3 1.3E+02 0.0028 29.1 9.6 64 124-193 186-249 (269)
333 PRK12705 hypothetical protein; 51.2 1.3E+02 0.0029 32.0 10.3 11 321-331 310-320 (508)
334 KOG0976 Rho/Rac1-interacting s 51.2 72 0.0016 36.5 8.6 48 135-182 96-143 (1265)
335 PRK14068 exodeoxyribonuclease 50.9 36 0.00078 27.5 4.8 64 133-200 5-68 (76)
336 PRK11546 zraP zinc resistance 50.8 1.3E+02 0.0029 27.1 8.9 16 149-164 65-80 (143)
337 PF02050 FliJ: Flagellar FliJ 50.2 1.2E+02 0.0026 23.5 9.1 57 133-189 14-75 (123)
338 PF11068 YlqD: YlqD protein; 49.7 1.5E+02 0.0032 26.3 8.8 68 125-192 14-86 (131)
339 PRK14162 heat shock protein Gr 49.7 1.3E+02 0.0029 28.2 9.0 46 124-169 32-77 (194)
340 PRK12704 phosphodiesterase; Pr 49.6 1.3E+02 0.0029 31.8 10.1 7 283-289 283-289 (520)
341 PF07407 Seadorna_VP6: Seadorn 49.6 24 0.00052 36.2 4.4 29 160-188 33-61 (420)
342 PRK09343 prefoldin subunit bet 49.6 98 0.0021 26.5 7.6 22 168-189 87-108 (121)
343 COG0497 RecN ATPase involved i 49.5 1.1E+02 0.0023 33.2 9.4 18 208-225 364-381 (557)
344 PRK14158 heat shock protein Gr 49.5 1.2E+02 0.0026 28.5 8.7 45 126-170 35-79 (194)
345 PTZ00454 26S protease regulato 49.4 68 0.0015 32.6 7.7 47 150-196 20-66 (398)
346 TIGR02338 gimC_beta prefoldin, 49.4 77 0.0017 26.3 6.8 37 131-167 67-103 (110)
347 PLN02320 seryl-tRNA synthetase 49.4 86 0.0019 33.4 8.6 12 286-297 238-249 (502)
348 KOG0796 Spliceosome subunit [R 49.3 71 0.0015 32.4 7.6 42 130-171 96-141 (319)
349 PRK10698 phage shock protein P 49.3 1.8E+02 0.0039 27.3 9.9 23 147-169 54-76 (222)
350 TIGR03017 EpsF chain length de 48.8 2.5E+02 0.0054 27.9 11.4 17 177-193 258-274 (444)
351 PF06216 RTBV_P46: Rice tungro 48.8 89 0.0019 31.4 8.1 56 131-186 57-112 (389)
352 COG4913 Uncharacterized protei 48.4 1.6E+02 0.0035 33.6 10.6 8 215-222 733-740 (1104)
353 COG1382 GimC Prefoldin, chaper 48.4 1.3E+02 0.0028 26.5 8.1 6 154-159 79-84 (119)
354 PF06818 Fez1: Fez1; InterPro 48.4 76 0.0016 30.2 7.2 14 169-182 90-103 (202)
355 PF11544 Spc42p: Spindle pole 48.3 1.2E+02 0.0026 25.0 7.4 28 147-174 7-34 (76)
356 PF06273 eIF-4B: Plant specifi 48.3 34 0.00075 36.3 5.5 87 98-192 321-415 (492)
357 PF10498 IFT57: Intra-flagella 48.2 1.1E+02 0.0024 31.1 8.8 21 170-190 298-318 (359)
358 PRK09343 prefoldin subunit bet 48.0 83 0.0018 26.9 6.9 42 146-187 72-113 (121)
359 PF08286 Spc24: Spc24 subunit 48.0 6 0.00013 33.4 0.0 8 288-295 64-71 (118)
360 PF06717 DUF1202: Protein of u 47.9 1.1E+02 0.0024 30.9 8.6 65 149-217 135-199 (308)
361 COG1340 Uncharacterized archae 47.8 1.4E+02 0.003 30.0 9.3 33 131-163 13-45 (294)
362 PTZ00464 SNF-7-like protein; P 47.8 1.8E+02 0.004 27.5 9.7 32 130-161 17-48 (211)
363 KOG0933 Structural maintenance 47.6 1E+02 0.0022 35.9 9.2 40 151-190 821-860 (1174)
364 KOG3156 Uncharacterized membra 47.6 2.6E+02 0.0056 27.2 10.6 72 151-225 107-184 (220)
365 TIGR01730 RND_mfp RND family e 47.5 1.5E+02 0.0032 27.4 9.0 28 136-163 62-89 (322)
366 KOG4196 bZIP transcription fac 47.4 67 0.0015 29.0 6.3 26 164-189 86-111 (135)
367 PRK03947 prefoldin subunit alp 47.3 94 0.002 26.5 7.2 45 129-173 92-136 (140)
368 PF15188 CCDC-167: Coiled-coil 47.3 56 0.0012 27.2 5.5 24 157-180 41-64 (85)
369 PF04799 Fzo_mitofusin: fzo-li 47.2 1.2E+02 0.0026 28.2 8.2 44 146-193 121-164 (171)
370 PF04799 Fzo_mitofusin: fzo-li 47.2 1.3E+02 0.0028 28.0 8.4 21 169-189 123-143 (171)
371 PRK14143 heat shock protein Gr 47.1 2.7E+02 0.006 26.9 12.2 42 129-170 65-106 (238)
372 PF14073 Cep57_CLD: Centrosome 47.1 1.4E+02 0.003 28.0 8.7 66 129-194 55-134 (178)
373 PF01763 Herpes_UL6: Herpesvir 46.9 72 0.0016 34.5 7.6 47 142-188 360-406 (557)
374 KOG1029 Endocytic adaptor prot 46.9 76 0.0017 36.1 7.9 7 155-161 489-495 (1118)
375 PRK04778 septation ring format 46.8 67 0.0015 33.9 7.4 9 323-331 479-487 (569)
376 PF07111 HCR: Alpha helical co 46.8 4.1E+02 0.009 29.9 13.3 135 130-278 520-699 (739)
377 KOG0933 Structural maintenance 46.7 97 0.0021 36.0 8.9 21 173-193 829-849 (1174)
378 KOG4570 Uncharacterized conser 46.5 1.8E+02 0.0038 30.3 9.9 69 149-225 329-401 (418)
379 PF01025 GrpE: GrpE; InterPro 46.4 1E+02 0.0022 26.6 7.4 39 130-168 10-48 (165)
380 KOG4674 Uncharacterized conser 46.4 1.6E+02 0.0035 36.2 10.9 82 130-224 1256-1352(1822)
381 PF07798 DUF1640: Protein of u 46.2 2E+02 0.0044 25.8 9.4 10 164-173 78-87 (177)
382 KOG0977 Nuclear envelope prote 46.2 1E+02 0.0022 33.3 8.6 45 149-193 145-189 (546)
383 PF05531 NPV_P10: Nucleopolyhe 46.0 1.4E+02 0.0031 24.4 7.5 44 151-194 10-56 (75)
384 PF05615 THOC7: Tho complex su 46.0 1.9E+02 0.0041 24.7 9.3 62 132-193 47-108 (139)
385 PRK05431 seryl-tRNA synthetase 45.9 92 0.002 31.9 8.0 60 130-189 34-96 (425)
386 TIGR02680 conserved hypothetic 45.6 1.1E+02 0.0024 35.9 9.5 35 162-196 293-327 (1353)
387 KOG0980 Actin-binding protein 45.6 1.1E+02 0.0025 35.0 9.1 18 148-165 462-479 (980)
388 PF07246 Phlebovirus_NSM: Phle 45.3 1.6E+02 0.0034 29.3 9.1 21 173-193 216-236 (264)
389 PF08172 CASP_C: CASP C termin 45.3 1.2E+02 0.0025 29.4 8.2 55 140-194 81-135 (248)
390 PRK00409 recombination and DNA 45.3 1.4E+02 0.0031 33.0 9.9 14 317-330 746-759 (782)
391 TIGR00998 8a0101 efflux pump m 45.2 1.6E+02 0.0034 27.9 9.0 9 181-189 154-162 (334)
392 PF08647 BRE1: BRE1 E3 ubiquit 45.2 1.7E+02 0.0038 24.0 9.0 57 138-194 24-80 (96)
393 KOG1656 Protein involved in gl 45.0 2.8E+02 0.0062 26.9 10.5 68 128-195 18-97 (221)
394 PF10174 Cast: RIM-binding pro 44.9 1.1E+02 0.0024 34.3 8.9 51 137-187 307-357 (775)
395 KOG4343 bZIP transcription fac 44.9 33 0.00071 37.2 4.8 31 164-194 307-337 (655)
396 PF07989 Microtub_assoc: Micro 44.9 1.6E+02 0.0034 23.7 7.6 31 158-188 42-72 (75)
397 PF10152 DUF2360: Predicted co 44.7 2.2E+02 0.0049 25.2 11.6 31 164-194 19-49 (148)
398 COG1842 PspA Phage shock prote 44.7 2.2E+02 0.0047 27.2 9.7 46 142-187 96-141 (225)
399 PF12808 Mto2_bdg: Micro-tubul 44.6 85 0.0018 24.0 5.7 26 161-186 24-49 (52)
400 PF04899 MbeD_MobD: MbeD/MobD 44.5 1.6E+02 0.0036 23.5 8.3 41 150-190 26-66 (70)
401 PF10779 XhlA: Haemolysin XhlA 44.5 1.4E+02 0.0031 23.1 7.2 21 167-187 28-48 (71)
402 KOG0977 Nuclear envelope prote 44.1 1E+02 0.0022 33.3 8.2 46 289-334 380-434 (546)
403 KOG1029 Endocytic adaptor prot 43.9 1.3E+02 0.0028 34.4 9.1 18 146-163 543-560 (1118)
404 PF09730 BicD: Microtubule-ass 43.9 1.2E+02 0.0027 33.7 9.0 56 139-194 35-90 (717)
405 PF10046 BLOC1_2: Biogenesis o 43.8 1.8E+02 0.004 23.9 9.6 25 149-173 39-63 (99)
406 PF07412 Geminin: Geminin; In 43.6 61 0.0013 30.8 5.8 37 133-173 117-153 (200)
407 TIGR00344 alaS alanine--tRNA l 43.6 1.5E+02 0.0033 33.3 9.8 55 132-186 699-753 (851)
408 PRK14155 heat shock protein Gr 43.5 2.9E+02 0.0064 26.2 10.4 37 133-169 15-51 (208)
409 TIGR01242 26Sp45 26S proteasom 43.1 58 0.0013 31.8 5.9 33 153-185 7-39 (364)
410 PF08232 Striatin: Striatin fa 43.1 1.2E+02 0.0026 26.6 7.2 47 148-194 28-74 (134)
411 PF12709 Kinetocho_Slk19: Cent 43.0 79 0.0017 26.5 5.8 30 159-188 49-78 (87)
412 PF02388 FemAB: FemAB family; 42.8 96 0.0021 31.3 7.5 25 131-155 242-266 (406)
413 KOG2391 Vacuolar sorting prote 42.7 1E+02 0.0022 31.8 7.5 16 169-184 256-271 (365)
414 PF06160 EzrA: Septation ring 42.7 1.1E+02 0.0024 32.4 8.2 54 135-188 98-151 (560)
415 PF10212 TTKRSYEDQ: Predicted 42.5 1.8E+02 0.0039 31.4 9.7 57 137-193 419-475 (518)
416 PF02388 FemAB: FemAB family; 42.5 1.7E+02 0.0037 29.5 9.3 47 146-192 243-292 (406)
417 KOG2129 Uncharacterized conser 42.5 79 0.0017 33.6 6.9 21 164-184 206-226 (552)
418 TIGR02977 phageshock_pspA phag 42.5 2.5E+02 0.0053 26.0 9.6 6 207-212 166-171 (219)
419 PRK03992 proteasome-activating 42.4 87 0.0019 31.3 7.1 36 157-192 13-48 (389)
420 KOG1853 LIS1-interacting prote 42.4 1.6E+02 0.0035 29.6 8.7 37 152-188 44-81 (333)
421 PF14988 DUF4515: Domain of un 42.3 2E+02 0.0042 27.0 9.0 11 287-297 154-164 (206)
422 PF12711 Kinesin-relat_1: Kine 42.3 69 0.0015 26.7 5.3 20 164-183 49-68 (86)
423 PF09755 DUF2046: Uncharacteri 42.1 2.2E+02 0.0047 28.9 9.7 59 135-193 110-169 (310)
424 KOG0612 Rho-associated, coiled 42.0 2.1E+02 0.0046 34.0 10.6 63 133-195 450-516 (1317)
425 KOG0981 DNA topoisomerase I [R 42.0 80 0.0017 34.8 7.1 31 128-158 633-663 (759)
426 PRK13922 rod shape-determining 42.0 73 0.0016 30.0 6.2 24 167-190 70-93 (276)
427 PF06785 UPF0242: Uncharacteri 41.8 2.3E+02 0.005 29.5 9.9 57 133-189 87-157 (401)
428 PF08657 DASH_Spc34: DASH comp 41.8 1.4E+02 0.003 29.2 8.1 50 137-186 160-214 (259)
429 KOG0963 Transcription factor/C 41.8 1.6E+02 0.0034 32.5 9.2 38 156-193 171-209 (629)
430 PF05852 DUF848: Gammaherpesvi 41.7 1.1E+02 0.0024 27.8 6.9 53 131-183 54-106 (146)
431 PHA03161 hypothetical protein; 41.5 2.4E+02 0.0052 25.9 9.1 54 130-183 53-106 (150)
432 KOG1937 Uncharacterized conser 41.5 2.9E+02 0.0062 29.8 10.8 40 133-172 233-275 (521)
433 PRK15396 murein lipoprotein; P 41.4 1.6E+02 0.0035 24.1 7.2 9 150-158 37-45 (78)
434 KOG0995 Centromere-associated 41.3 2.3E+02 0.0051 31.0 10.3 13 316-328 456-468 (581)
435 PF10174 Cast: RIM-binding pro 41.1 1.5E+02 0.0033 33.3 9.2 65 130-194 321-385 (775)
436 PRK13182 racA polar chromosome 41.0 2.4E+02 0.0052 25.9 9.2 20 174-193 119-138 (175)
437 PF14257 DUF4349: Domain of un 41.0 87 0.0019 29.4 6.5 52 131-183 142-193 (262)
438 KOG0288 WD40 repeat protein Ti 40.6 2.1E+02 0.0047 30.3 9.6 12 211-222 124-135 (459)
439 KOG1118 Lysophosphatidic acid 40.5 1.5E+02 0.0031 30.6 8.2 60 122-182 171-231 (366)
440 PF13815 Dzip-like_N: Iguana/D 40.4 2.2E+02 0.0047 24.1 8.2 38 156-193 77-114 (118)
441 PF10212 TTKRSYEDQ: Predicted 40.4 2.1E+02 0.0046 30.9 9.8 56 132-187 421-476 (518)
442 PRK07352 F0F1 ATP synthase sub 40.4 2.1E+02 0.0045 25.4 8.5 40 131-170 50-89 (174)
443 PF08647 BRE1: BRE1 E3 ubiquit 40.1 2.1E+02 0.0045 23.5 7.9 22 142-163 49-70 (96)
444 PRK05771 V-type ATP synthase s 40.1 2.3E+02 0.005 30.3 10.1 35 128-162 212-246 (646)
445 COG4372 Uncharacterized protei 40.1 1.4E+02 0.0031 31.6 8.3 39 159-197 137-175 (499)
446 COG4467 Regulator of replicati 40.1 1.5E+02 0.0032 26.2 7.1 46 146-191 9-54 (114)
447 KOG2391 Vacuolar sorting prote 40.0 1.4E+02 0.0031 30.8 8.1 45 156-200 250-294 (365)
448 PF10552 ORF6C: ORF6C domain; 40.0 1.5E+02 0.0032 24.9 7.1 41 149-189 12-52 (116)
449 CHL00118 atpG ATP synthase CF0 39.9 2.6E+02 0.0056 24.5 9.6 42 130-171 52-93 (156)
450 PRK14161 heat shock protein Gr 39.9 1.9E+02 0.004 26.7 8.3 8 215-222 106-113 (178)
451 cd00890 Prefoldin Prefoldin is 39.9 1.5E+02 0.0032 24.2 7.1 36 132-167 88-123 (129)
452 PRK11519 tyrosine kinase; Prov 39.7 1.6E+02 0.0034 32.0 9.0 26 139-164 261-286 (719)
453 PF07798 DUF1640: Protein of u 39.7 1.8E+02 0.004 26.0 8.1 19 169-187 76-94 (177)
454 KOG4403 Cell surface glycoprot 39.6 1.9E+02 0.004 31.1 9.1 18 173-190 309-326 (575)
455 PRK03947 prefoldin subunit alp 39.6 1.7E+02 0.0038 24.9 7.6 47 134-180 90-136 (140)
456 TIGR03007 pepcterm_ChnLen poly 39.5 2.9E+02 0.0063 28.0 10.4 11 215-225 373-383 (498)
457 PF07195 FliD_C: Flagellar hoo 39.4 1.2E+02 0.0025 28.3 7.1 44 147-193 195-238 (239)
458 PF15294 Leu_zip: Leucine zipp 39.4 1.5E+02 0.0033 29.4 8.1 16 172-187 159-174 (278)
459 PF14389 Lzipper-MIP1: Leucine 39.3 1.9E+02 0.004 23.7 7.4 19 175-193 56-74 (88)
460 CHL00019 atpF ATP synthase CF0 39.1 2.2E+02 0.0047 25.6 8.5 21 137-157 68-88 (184)
461 COG1792 MreC Cell shape-determ 39.0 1.3E+02 0.0028 29.3 7.6 24 160-183 84-107 (284)
462 TIGR01730 RND_mfp RND family e 39.0 2.5E+02 0.0054 25.9 9.1 29 129-157 62-90 (322)
463 PRK13455 F0F1 ATP synthase sub 38.9 2.9E+02 0.0062 24.7 9.5 39 130-168 57-95 (184)
464 COG3879 Uncharacterized protei 38.6 1.6E+02 0.0034 29.0 7.9 31 135-165 54-84 (247)
465 PF10046 BLOC1_2: Biogenesis o 38.5 2.3E+02 0.0049 23.4 9.5 34 138-171 21-54 (99)
466 KOG4674 Uncharacterized conser 38.4 1.4E+02 0.003 36.7 8.8 57 133-192 1316-1372(1822)
467 KOG1003 Actin filament-coating 38.3 2.5E+02 0.0053 27.0 8.9 98 130-230 94-191 (205)
468 PRK14064 exodeoxyribonuclease 38.3 63 0.0014 25.9 4.4 60 129-192 1-60 (75)
469 TIGR03495 phage_LysB phage lys 38.1 3E+02 0.0064 24.7 9.4 66 132-198 27-92 (135)
470 PF14257 DUF4349: Domain of un 38.1 1.6E+02 0.0035 27.6 7.8 62 134-195 128-191 (262)
471 KOG0971 Microtubule-associated 38.1 1.1E+02 0.0023 35.5 7.5 56 132-187 418-476 (1243)
472 PF04201 TPD52: Tumour protein 38.0 91 0.002 28.8 5.9 41 142-182 26-66 (162)
473 PF04129 Vps52: Vps52 / Sac2 f 38.0 4.3E+02 0.0094 27.7 11.6 95 131-225 21-118 (508)
474 PF09766 FimP: Fms-interacting 37.9 2.6E+02 0.0056 28.1 9.6 69 121-193 81-149 (355)
475 PRK10636 putative ABC transpor 37.8 1.6E+02 0.0034 31.5 8.5 62 131-192 563-631 (638)
476 PF06632 XRCC4: DNA double-str 37.8 3.9E+02 0.0085 27.1 10.9 65 136-219 128-192 (342)
477 PF07058 Myosin_HC-like: Myosi 37.8 69 0.0015 32.6 5.5 48 146-193 1-48 (351)
478 KOG0979 Structural maintenance 37.8 3.5E+02 0.0075 31.7 11.4 95 127-221 286-381 (1072)
479 KOG0241 Kinesin-like protein [ 37.8 1.9E+02 0.0042 34.1 9.4 66 120-185 353-430 (1714)
480 KOG4657 Uncharacterized conser 37.7 4.1E+02 0.0089 26.2 10.7 77 132-221 52-128 (246)
481 KOG1899 LAR transmembrane tyro 37.6 93 0.002 34.7 6.8 71 135-221 108-178 (861)
482 PRK09841 cryptic autophosphory 37.6 1.8E+02 0.0038 31.7 8.9 59 134-192 256-330 (726)
483 PF09763 Sec3_C: Exocyst compl 37.6 1.7E+02 0.0037 31.5 8.8 69 140-222 25-93 (701)
484 KOG0614 cGMP-dependent protein 37.5 1.2E+02 0.0026 33.5 7.5 56 139-194 18-73 (732)
485 TIGR00414 serS seryl-tRNA synt 37.4 1.9E+02 0.0041 29.6 8.7 64 131-194 30-97 (418)
486 PF06428 Sec2p: GDP/GTP exchan 37.3 2.6E+02 0.0056 23.7 8.8 79 131-212 1-80 (100)
487 PF11180 DUF2968: Protein of u 37.2 3.3E+02 0.0071 25.9 9.5 69 130-198 118-186 (192)
488 COG2900 SlyX Uncharacterized p 37.1 2.3E+02 0.0049 23.2 7.3 56 126-181 3-58 (72)
489 KOG0239 Kinesin (KAR3 subfamil 37.0 2.2E+02 0.0049 31.3 9.6 66 130-195 240-315 (670)
490 PF05701 WEMBL: Weak chloropla 37.0 2E+02 0.0044 30.3 9.0 64 131-194 288-351 (522)
491 PF01920 Prefoldin_2: Prefoldi 37.0 1E+02 0.0022 24.3 5.5 44 128-171 59-102 (106)
492 PF11068 YlqD: YlqD protein; 36.9 1.6E+02 0.0034 26.0 7.1 69 141-222 16-85 (131)
493 PF15450 DUF4631: Domain of un 36.9 1.8E+02 0.0039 31.4 8.6 94 128-225 409-503 (531)
494 TIGR00998 8a0101 efflux pump m 36.9 2.5E+02 0.0054 26.6 8.9 59 135-193 77-135 (334)
495 PF06632 XRCC4: DNA double-str 36.7 3E+02 0.0065 27.9 9.9 63 131-193 137-200 (342)
496 PRK14153 heat shock protein Gr 36.6 1.4E+02 0.0031 28.0 7.1 54 135-189 24-77 (194)
497 PRK14148 heat shock protein Gr 36.6 1.9E+02 0.0042 27.1 7.9 56 122-177 31-86 (195)
498 PRK13902 alaS alanyl-tRNA synt 36.5 2.3E+02 0.005 32.2 9.9 93 80-188 698-790 (900)
499 PF08580 KAR9: Yeast cortical 36.5 3E+02 0.0065 30.4 10.5 76 133-222 237-317 (683)
500 PF08657 DASH_Spc34: DASH comp 36.5 1.5E+02 0.0034 28.8 7.6 63 131-193 180-259 (259)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.40 E-value=0.00062 Score=73.91 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 019419 173 KQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 173 kENkELqqQLa~aEaEI~sL~~ 194 (341)
.|.+++..++.-++++..+|.+
T Consensus 495 ael~k~e~Ki~~l~ae~~al~s 516 (1102)
T KOG1924|consen 495 AELQKHEEKIKLLEAEKQALSS 516 (1102)
T ss_pred HHHHHhhhhcccCchhhhhccC
Confidence 3333333444444444444443
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.33 E-value=0.0011 Score=71.96 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 168 NAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 168 NeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++.....++.+.+++..+++|-.|++
T Consensus 483 ~~ke~ta~qe~qael~k~e~Ki~~l~a 509 (1102)
T KOG1924|consen 483 FDKELTARQEAQAELQKHEEKIKLLEA 509 (1102)
T ss_pred HHHHHhHHHHHHHHHHHhhhhcccCch
Confidence 333444555666666666666655554
No 3
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.03 E-value=0.085 Score=41.97 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
..+|++++...=+.|.-|+.++..|+.+...+.+.|..|+.+|..|+++-.....-|.+|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888888888888888888887777766666443
No 4
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.13 Score=49.96 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=42.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 125 EDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 125 ~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..+.-.++|..-.-+|...++-..+++++|.+|..++..++...+++++++.+++.++..++.+|..|..
T Consensus 25 ~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 25 FAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555666666666666666666666666666666666666666666666666666655553
No 5
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.12 E-value=0.067 Score=47.08 Aligned_cols=61 Identities=33% Similarity=0.433 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
++..+.+|+++|.+.+..++.|+.++..|.+.+. +++|..+..+|+.++..++..+..|.+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777777777777777777777777776653 245555555555555555555555554
No 6
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.06 E-value=0.17 Score=42.97 Aligned_cols=55 Identities=31% Similarity=0.303 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+++|-..|...++.+..|-.++.+|+..+..+.+.|..|+-||..|+..|...+.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888999999999999999999999999999999999999999999988776
No 7
>PRK11637 AmiB activator; Provisional
Probab=95.05 E-value=0.25 Score=49.37 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~Lik-------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+++++++.+++..++.++ +++.++..+..++..+....+.++.+...++.++..++.+|..++
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 444444444444444444444444455555555555555444443
No 8
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.67 E-value=0.24 Score=46.22 Aligned_cols=64 Identities=14% Similarity=0.315 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 131 KKKKEFEEKLMLSENLVKDL----QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeL----QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++.+++.+|+..++-..++ .+....+..++........+|+.+|.+|+++|+.+..++..|..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555443332222 23333334444445555555666666666666666666655543
No 9
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.3 Score=47.55 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
.+.+++++++.+.-.++.+..|.+++..+.+++..+++++++++.+.++|+++++.++..|.+.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999999999999999999998888877543
No 10
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.31 E-value=0.31 Score=41.76 Aligned_cols=55 Identities=35% Similarity=0.262 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+++|=..+...+..+..+-.++.+|+..+..+.+.|..|+-||..|+..|...+.
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3788889999999999999999999999999999999999999999999987643
No 11
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=94.21 E-value=0.4 Score=45.92 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAE------------------------------------------------- 160 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkE------------------------------------------------- 160 (341)
.++..++..+|++.+.|+..||++|..++.+
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIV 84 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIV 84 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHH
Confidence 4568889999999999999999999887733
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 161 ---FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 161 ---LekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
-++.+.+|.+||.|+..+.+++..++.++.+|++-+.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2347889999999999999999999999999996433
No 12
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.05 E-value=0.26 Score=47.74 Aligned_cols=62 Identities=27% Similarity=0.289 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.++.|||++.+..+.+|..++..|..|++..+++...|+.||..|...+..+..+...|+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888877777764
No 13
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.95 E-value=0.56 Score=42.43 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
++.....|...+..+..|+.++..|..++......++.|..|+.-|+-++..++.++..|+.
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555555555555555556666666666666666665553
No 14
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.88 E-value=0.71 Score=37.90 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeE-------LEkENkELqqQLa~aEaEI~ 190 (341)
..+|++|++.+=+-|.-||.+|+.|+.+...+.+.++. |+.+|.+|+++...-...+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888777776666555 55555555555554444443
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.83 E-value=0.52 Score=49.99 Aligned_cols=97 Identities=24% Similarity=0.151 Sum_probs=51.8
Q ss_pred ccCcccccccCccc--cccccccCCCCccccccccCccCCchhh--hccc-ccCccccccCCcccccceeecC---CCC-
Q 019419 10 TNNMSHSTAATTTF--RLRANSKTRESPKQEAGINGVSLSPELK--ARAK-SVPADVKTNNISKSRRALILNK---PKS- 80 (341)
Q Consensus 10 ~~~~~~~~~~~~~~--r~r~~sk~~~~~~~~~~~~~~~~~~~~~--~~~~-s~~~d~k~~~~sk~~rs~~~nk---~ks- 80 (341)
.+|+..+--|-+.- ...+.....-++.+-|||-.+..++.-- +-.- .+|.+.. +++.....|.++. |+.
T Consensus 9 F~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~~~--~~s~~~~~V~F~ayyLPk~~ 86 (546)
T PF07888_consen 9 FNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPENYV--EGSAVNCQVQFQAYYLPKDD 86 (546)
T ss_pred EeccccccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCcccc--CCCccceEEEECcccCCCCC
Confidence 35666665555543 5555666678889999987766666211 1111 2333433 6777777888775 553
Q ss_pred CCCccCCCCCcceeEEEeecCccccccccCcc
Q 019419 81 AEGAVGSHKDDEVKVFGRSLNRPVVEQFARPR 112 (341)
Q Consensus 81 ~~~~lgs~~~e~~~v~~~~~~r~~~~~~~~~r 112 (341)
++-|.----+....|+|+|.| -||..++
T Consensus 87 ~e~YqfcYv~~~g~V~G~S~p----Fqf~~~~ 114 (546)
T PF07888_consen 87 DEFYQFCYVDQKGEVRGASTP----FQFRAPK 114 (546)
T ss_pred CCeEEEEEECCCccEEEecCC----cccCCCC
Confidence 333332211112336666654 2455444
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.56 E-value=0.44 Score=44.44 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 129 MDKKKKEFEEKLMLSENL----VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~L----ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
-.+++++++.+|....+. ..++++++.+.+..+..+.++|.+|..|+..++.+++.+++++..++.
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888876553 457788888888888889999999999999999999999999888874
No 17
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=93.20 E-value=0.41 Score=44.67 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV--KAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 127 ~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELe--kLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.-.+.+|..|+|+++..+..+...+.||..|.+-|. .+++..++|.++....+..|...++-+
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667999999999999999999999999988765 344455555555555555555444443
No 18
>PRK11637 AmiB activator; Provisional
Probab=92.81 E-value=0.74 Score=46.07 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
++++.++...+..+..++.+|..+..++..+......++.+...++.++..++.
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555444444444444444444444433333333333
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.65 E-value=0.77 Score=42.89 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.++++.+.......+|+.++.+|..|++.+...|+.|++....++++++.++.++.++..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777777877777777777777777777777777777766664
No 20
>PRK09039 hypothetical protein; Validated
Probab=92.44 E-value=1.4 Score=43.71 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+...++.+|...+....+...++..|+.++..|+.+...|+.+...++.+...+..+|.+|.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677776666666665566666666555555555555555544444444444444443
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.32 E-value=0.71 Score=42.21 Aligned_cols=56 Identities=30% Similarity=0.256 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.|+........++++...|..|+..|+.+|+.|+.|+..|.+++...+.+-..|-
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455677888888999999999999999999999998888887765443
No 22
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.01 E-value=0.39 Score=52.68 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.|...+.+|++|.+....+-..|..|...|+.-.-..++.
T Consensus 193 ~l~~~s~sl~~er~~~~~~~~~~~dels~m~k~~~~~e~~ 232 (830)
T KOG1923|consen 193 PLPGASSSLNKEREPQSYQRKALLDELSCMQKLSIEKERS 232 (830)
T ss_pred cCchhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4566666777776666556666666666555544444433
No 23
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.63 E-value=0.99 Score=47.23 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=40.4
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 121 ~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++|..+-+++. =+-+|.+.+.-..+||.+|++|+.|++.+..+..+++.++++|+.++..++.++
T Consensus 55 ~~vV~~~FddkV---nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 55 TGVVDTTFDDKV---RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred cceecchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456666544442 234555566666677777777777766666666666666666666666666555
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.61 E-value=1.7 Score=34.58 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
|-++..+.-++.+=.-|..|+.|+..+++.|..|..+|..|..+..+++.+-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666777777777777777777777777777777776544
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.40 E-value=2.3 Score=34.64 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAE 160 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkE 160 (341)
..+|++|++.+=..|.-||.+|..|+.+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEk 33 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766544
No 26
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.14 E-value=3.1 Score=32.47 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|+.-|+.--.-+..++.+|...+.....+..+..+.+..|.+|..++..++.++..|.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333433333334444444444444445555666666677777777777777765554
No 27
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.31 E-value=2.1 Score=39.50 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
|+.|.+++.++..-...++..+..+..|...+.+-...++.++.+|+.+|...+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333444444444444444444444444444444433333
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.22 E-value=5.2 Score=30.15 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
..-+..+..|..++..|...|..|..++..|..++..+..+
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555555555555554443
No 29
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.20 E-value=3 Score=41.40 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
|--|..+|+++++-..+-+.||..|+..|.+.++ +=.|+|.+....||+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE--DWIEEECHRVEAQLA 118 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMRE--DWIEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5666777777777666666666666666655332 223344444444444
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.41 E-value=1.4 Score=32.29 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.|+.+...|+.....+...++.|..||..|+.++..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777877777888888888888888888887777655
No 31
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.26 E-value=4.6 Score=36.61 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++.+.+.|++....+..++.|+.+|+-++..+.+++..|+.||.+|-..+-
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555553
No 32
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.03 E-value=3.3 Score=36.93 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
.+..++..+......|..++..|.+++.....+|..|.++
T Consensus 63 ~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 63 ELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334445555555555555555555543
No 33
>PRK04406 hypothetical protein; Provisional
Probab=88.88 E-value=4 Score=32.71 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
|.+..+++.|...|..+...+.=|..|+..+...+...+.|+.+.+.|..+|..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666666666666666665555555543
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.80 E-value=1.7 Score=38.29 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccccch
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk--ENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
++|...+..+.+|+.++..|..++..+......|.. -+.+|..++..++.+|..|.+.=.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666888888888888888888888888887 667899999999999988886444
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.72 E-value=3.9 Score=36.03 Aligned_cols=55 Identities=29% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
...++++..+..+++|+.+...+..++..|...+..||.+...+..+|..+...+
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555554443
No 36
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=88.68 E-value=2.7 Score=37.54 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS---LNAELEKQNKKLVEDLV 183 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqe---rNeELEkENkELqqQLa 183 (341)
+.....++...+...+.|+.+|...++.|..|+. -|++|+.++..|+.++.
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444 33444444444444444
No 37
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=88.53 E-value=1.7 Score=38.46 Aligned_cols=53 Identities=26% Similarity=0.279 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.-.+++++..+..-|...+.|+.++.+...|+..|+...+++...|..|..+|
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44588999999999999999999999999999999999999999999887653
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=88.47 E-value=7.8 Score=29.21 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.-+..+..|..++..+...|..|..++..|..++..++.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554445555555444444444444433
No 39
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=88.12 E-value=2.6 Score=31.81 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
.+|+.++..|..+...|...+..|+.++..|..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444433
No 40
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.97 E-value=3.8 Score=44.34 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
..+.++++.+.++..+..+.+|+.++.+++.+++.|..+.+++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888888777777777777777666664
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.71 E-value=4.5 Score=39.55 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.+...++++|...+..+..++.++..|+.++..+....+++..+..++..+++.++..
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555544433
No 42
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.55 E-value=9.4 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
-.+..|++.|+....-+.-.+..+..|..|-.....+....-.++.+|+.++..+..++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777766666666666667777777777666665
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.29 E-value=5.8 Score=35.08 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
......++++++..++.+.++++++..++.......+....++.+...+...+..+..++..|.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557778888888888888888888877777666665556666666666666666666655554
No 44
>smart00338 BRLZ basic region leucin zipper.
Probab=86.84 E-value=3 Score=31.47 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.+.+|+.++..|..+...|..++..|+.++..|..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555656666666665555554
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.68 E-value=6.1 Score=33.61 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+..++.++.++..++..++....+|..||..|+-+-+.+...+..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999988888876654
No 46
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.57 E-value=4.4 Score=31.57 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
..++.-|..|+..+...+.+.+.|+.+.+.|..+|..+.
T Consensus 14 a~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 14 AFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444444444444444555555555555554443
No 47
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.47 E-value=5.7 Score=37.95 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
++.+..|+..+.......-+|+++|..|+.|+..|+.+++++.-+..+++++-.....+|
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555556677777777777777777777666666655555554444444
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.41 E-value=2.2 Score=35.90 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.+++.++.+++.++.+++.+|+.|+.|...|+...+..+...
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 456677777777777777777777777777666444444433
No 49
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=86.27 E-value=3.2 Score=31.97 Aligned_cols=54 Identities=28% Similarity=0.270 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALK-AEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALk-kELekLqerNeELEkENkELqqQL 182 (341)
....+.+++..|+++++++..++.|+-.+. .+-..++.+......+...|+.+|
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344489999999999999999999988775 333445555555555555555544
No 50
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=86.06 E-value=4.3 Score=41.95 Aligned_cols=10 Identities=0% Similarity=0.225 Sum_probs=6.3
Q ss_pred HHHHHHHHhh
Q 019419 287 FAQLYHSLTK 296 (341)
Q Consensus 287 vVEfY~sL~k 296 (341)
+-||-+-++-
T Consensus 418 leefkrrile 427 (442)
T PF06637_consen 418 LEEFKRRILE 427 (442)
T ss_pred HHHHHHHHHh
Confidence 5677666653
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.75 E-value=4.9 Score=35.41 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
++|.+.+.+...+.-|..|+.++..|..+|..+..+
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~ 57 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQ 57 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544444444444443333
No 52
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.58 E-value=2.6 Score=44.27 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
..+..+-++++++.|.-+..|+.++..+......+..+.++|+.|+..|+.|+..+.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555566666666666666666665555555666666666666666666664444
No 53
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.54 E-value=5 Score=39.15 Aligned_cols=13 Identities=0% Similarity=-0.051 Sum_probs=9.1
Q ss_pred chHHHHHHHHHhh
Q 019419 284 TPSFAQLYHSLTK 296 (341)
Q Consensus 284 aPevVEfY~sL~k 296 (341)
|=++++.|++-.+
T Consensus 261 ave~l~iik~a~~ 273 (290)
T COG4026 261 AVEELEIIKEAIE 273 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 4478888887644
No 54
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.49 E-value=5.6 Score=39.01 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+++..++||.-+-.-|..|.+.|+..|+.|-.+|.+|...|..+..++..|+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 3444555665555555556666666666666666677766666666665444
No 55
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.11 E-value=4.3 Score=44.11 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 131 KKKKEF-EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 131 ~~~kel-~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
+.|+.. .++|-+.|.-.++|+++|+.++..++.++.....-+.|...|++.+++++.+...|..+++
T Consensus 85 ~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 85 KRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 334443 5666777777778888888877777777766666666667777777777766665555444
No 56
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.08 E-value=8.3 Score=40.05 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~Lik-------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++.+.++-+|+..++.+. .|+.+|..++.++..+..+.-+.+.++++++.+++.++..+..|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 444444545544444444 344444444444444444444444444444444444444444444
No 57
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.04 E-value=6.6 Score=38.61 Aligned_cols=62 Identities=31% Similarity=0.356 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++.+++|+..+....+++.+|..|..++.........|+.+....+.+|..+..=+..|.+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 56667777777777777777788888887777777788888888888888888888888886
No 58
>PHA01732 proline-rich protein
Probab=84.97 E-value=1.8 Score=36.38 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=4.7
Q ss_pred CchHHHHH
Q 019419 283 KTPSFAQL 290 (341)
Q Consensus 283 raPevVEf 290 (341)
-||.|-+-
T Consensus 43 ~apki~~~ 50 (94)
T PHA01732 43 EAPKIREA 50 (94)
T ss_pred chhHHHHH
Confidence 56666553
No 59
>PF14282 FlxA: FlxA-like protein
Probab=84.63 E-value=3.6 Score=34.50 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDL 150 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeL 150 (341)
+..|+.|++++...+.-+.+|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444444
No 60
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.51 E-value=12 Score=29.69 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+..-+.+|+..+.+++.++..|..+++..+.++.+|.
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666777777777776666555
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=3.7 Score=45.87 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
+++-+...+.++...+++..|+..+..++-+++.+++.+.+|+.||.+|+.++...
T Consensus 642 e~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 642 EEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666666555555555555555555555554433
No 62
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.84 E-value=3.7 Score=39.12 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++|+.+...+....|+.++....++++.++.....|+++..+++.+++++-++-..|+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555555555556667777777777777777777777777777777776666665555
No 63
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=83.66 E-value=8.7 Score=31.45 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
..-..+..||..|..|-..++..++.++.|+.||+.|+.=+..+-..
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667888888888888888888888999998888877766443
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.47 E-value=4.1 Score=30.83 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
.++.++.+|++++..++..|++|+.+...|+...+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~ 55 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPD 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45556666666666666666666666655533333
No 65
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.20 E-value=8.7 Score=31.28 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer---NeELEkENkELqqQLa~aEaEI 189 (341)
.+.+-++-++......-..+|+.+-..+.+++..++.. .++|..+.+.+..++..++.++
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444332 2334444444444444444444
No 66
>PRK09039 hypothetical protein; Validated
Probab=83.15 E-value=8.6 Score=38.21 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
....+....+.+....+.-|+.||++|+..+..+....+.+|.+..+.+.+++.++..|..+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555666666666666666666666666666566666666655555443
No 67
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.06 E-value=4.3 Score=38.73 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
++++++|+..+..-+..+.+.++|++..+.++...+.|-+|+..|+.++
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3334444443333333444444444444444444444444444444333
No 68
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.75 E-value=12 Score=32.16 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
....++.++.++..++..++....+|.+||..|+-+-+.+...+..+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345778888888889999998889999999999888888888887663
No 69
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=82.71 E-value=7.9 Score=33.77 Aligned_cols=52 Identities=29% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
+|+|=.++...++-+..|-.|+..|+..+..+.+.|.-|+-||..|+..|..
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 5677778888888888888888888888888888888888888888888865
No 70
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.61 E-value=9.9 Score=35.20 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE-------KQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE-------kENkELqqQLa~aEaEI 189 (341)
.+++++++...+.+...++.++..|..++..++.+...|. .++..|+.....++.+|
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666644555555555555555555555544444 44444444444444444
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.52 E-value=6.7 Score=39.79 Aligned_cols=8 Identities=25% Similarity=0.247 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 019419 289 QLYHSLTK 296 (341)
Q Consensus 289 EfY~sL~k 296 (341)
.|++.|.+
T Consensus 517 ~~~~~l~~ 524 (562)
T PHA02562 517 ALLSILDS 524 (562)
T ss_pred HHHHHHHh
Confidence 34444433
No 72
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.51 E-value=20 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
+.|+++++..=.++..|+.+=..|..++..|......|...|..-+++++
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444444444444444444444444444444444333333333
No 73
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.27 E-value=11 Score=37.17 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhc
Q 019419 287 FAQLYHSLTKQVE 299 (341)
Q Consensus 287 vVEfY~sL~kr~~ 299 (341)
|-+||.-+.+++.
T Consensus 249 ~~q~~~~~~~~~~ 261 (314)
T PF04111_consen 249 LQQLAEFVEKRDP 261 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC
Confidence 3445555555543
No 74
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=82.24 E-value=23 Score=28.00 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.+++.++++++++..+...+.=.++..=...++.+.++.++|...-..++.+-..++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467888999999998888777666666666666666666666665555554444333
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.24 E-value=9 Score=43.82 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+..|+.|+-.+...++.+.+++++..+.++.|+.+.....+|..+..+++.++..+..++.+|.+
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777777777777777776666666666666666667777777777765
No 76
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.18 E-value=11 Score=37.51 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQS-------EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQs-------EL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
....++++||+..++=....|-| +|+-|+.+|..+.+.+.+|.+++.+...++...+..+..|.
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888866655555544 44455555555555555555666666666666666665555
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.08 E-value=22 Score=33.60 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
.+++.++..|..++..+..+|..|+..+.+|
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3445555555555555555555555444433
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.06 E-value=17 Score=39.12 Aligned_cols=62 Identities=24% Similarity=0.328 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.+|+++|+....-+..++.++..+..++.++.+..++++.++.++.+++...+.-+.=|..
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d 391 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD 391 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55556666666666666666666666666666666666666777777777766665544554
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.94 E-value=7.2 Score=43.69 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=48.3
Q ss_pred cCCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh---
Q 019419 125 EDGLMDKKKKEFEEKLML----SENLVKDLQSEVFALKAEFVKAQSLNAELEK-------QNKKLVEDLVAAEAKIA--- 190 (341)
Q Consensus 125 ~~~~~~~~~kel~EKLEe----sE~LikeLQsEL~ALkkELekLqerNeELEk-------ENkELqqQLa~aEaEI~--- 190 (341)
++++..+--+|-.|+|+- -..+|.++.-++.+++.....++-.+++|+. ++..|..|+..++.++.
T Consensus 640 eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 640 EEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555655555555555442 2234455555555555555555555555554 33345555555555443
Q ss_pred -----------hccccchhccccccCCchhhHHHHHHHHhhh
Q 019419 191 -----------SLSSREQREAVGEYQSPKFKDVQKLIANKLE 221 (341)
Q Consensus 191 -----------sL~~~~~~~~~~e~q~~~~kdiqkl~a~KLe 221 (341)
.++..+.+...-..+..+++.-|.++-++|+
T Consensus 720 ~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~ 761 (970)
T KOG0946|consen 720 SKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELN 761 (970)
T ss_pred cchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444445555555555555553
No 80
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.93 E-value=17 Score=31.43 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+.+++..|...+..+.+++++++.++.-++.+...+..++..+.
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554444
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=81.87 E-value=6.3 Score=41.97 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
...+++.|.|+....+...+.+++-..+++.+-..|-.....|..++..-..++..+.+++.+
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345688888888887777776666666666555544444444444444334444444333333
No 82
>PRK02119 hypothetical protein; Provisional
Probab=81.76 E-value=14 Score=29.46 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
...+.-|..|+.-+.+.+...+.|+.+.+.|..+|..
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444555554444444433
No 83
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=81.35 E-value=19 Score=29.46 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
++-|+|..+|...++.+..|..-+.+|+.+|.++.+.|..|+.++..++..
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888888888888888888888888888888888888776666554
No 84
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.33 E-value=14 Score=34.52 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..++..++.+..+-..|..++..+..+.+.|+..|..|...++..+.++.+|..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666677777777777777777777777777777777777763
No 85
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.23 E-value=8.8 Score=29.87 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.-+.+|+.+++.+..-++.|.+.....+.++..|+.++..+..++.++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445666666666666666555555556666666666666666665554
No 86
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.70 E-value=7.2 Score=33.71 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
++.+|.-.+..+..++.....|.++-+.|...+..|+.++.-+.+.+.-++++|..+
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444334433333333333333333344444444444444444444444444433
No 87
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.65 E-value=8.9 Score=40.68 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
..|+.++..+++++.++......++.+...++.++..++.++..+
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555443
No 88
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=80.31 E-value=24 Score=28.72 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+...+-.......+++.++.+.-.|+..++...-+||..+..+++++ +.+|..|+
T Consensus 15 ~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr 70 (79)
T PF08581_consen 15 NLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 334444455557789999999999999999999999999888888877 45554444
No 89
>PRK00295 hypothetical protein; Provisional
Probab=80.30 E-value=17 Score=28.53 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
..+-+|+++|..-+..+.+|..-|..... +.+.|+.+.+.|..+|...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~-------~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR-------VIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 34555666665555555555444444433 4445555555555555443
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.24 E-value=12 Score=40.05 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELE 172 (341)
+.++..|..+|...++.++.|+
T Consensus 170 ~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 170 REEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 91
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.17 E-value=5.5 Score=39.17 Aligned_cols=63 Identities=24% Similarity=0.292 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
|...+..+++++|+..+....+.+.+|..++.++..++...++...+...|+.++...+..+.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456667788888888888888888999999888888888888888888888888887776663
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.12 E-value=10 Score=37.08 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
|.+++.+|..+....+.+..+..+|+.++..+..+|
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 93
>PHA03211 serine/threonine kinase US3; Provisional
Probab=80.12 E-value=1.8 Score=44.01 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCcccccccCCchHHH-HHH
Q 019419 264 APLPPPPPPRPPARAAATQKTPSFA-QLY 291 (341)
Q Consensus 264 pPpPPp~P~~~~~~~~~v~raPevV-EfY 291 (341)
||+|||+++++..-+....++-|++ ++|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (461)
T PHA03211 51 PEHDPPSPHGARDEAARLCQIQELLAEMR 79 (461)
T ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHh
Confidence 3334444444444455566777776 555
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.61 E-value=19 Score=31.92 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.+++..|+..++....++.++.....++..+......+.++..++.+.+...+..+
T Consensus 104 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 160 (191)
T PF04156_consen 104 IQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEV 160 (191)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444445555555555555555555553333333333
No 95
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.39 E-value=17 Score=30.46 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFAL--KAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~AL--kkELekLqerNeELEkENkELqqQLa~a 185 (341)
+.++.+.++..++-...++.++.+| ..+++.++-...+|+.+.+.+..+++..
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555 4555444444444444444444444333
No 96
>PRK00295 hypothetical protein; Provisional
Probab=79.24 E-value=17 Score=28.46 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++-+.+|+.+++.+..-++.|.+.....++++..|+.+|..+..++.++.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467788888888777777777777777788888888888877776654
No 97
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=79.17 E-value=10 Score=37.30 Aligned_cols=57 Identities=21% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.|++.++....+...-|++|-..|+...+.|..+|.+|..+...++++|..++.+|
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 455555555555566678888888888888899999999888888888888777776
No 98
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=78.92 E-value=23 Score=28.11 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.-++++.+-+++....+..++.++..+..|...+....+++-.+..+-.++++..-..+.++.
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346788889999999999999999999999999887777777665555555555554444433
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.80 E-value=21 Score=30.84 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
...+...+|..++..+..++..+...++.|+.++.+++.++..++.+..+|.
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555555555555555555554444444444
No 100
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=78.78 E-value=24 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.|..|+..|.++.++|+++..+||+|+.||++-+
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666666665555544
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.76 E-value=9.8 Score=38.62 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019419 133 KKEFEEKLM 141 (341)
Q Consensus 133 ~kel~EKLE 141 (341)
++.|+.+|+
T Consensus 308 i~~l~~~l~ 316 (562)
T PHA02562 308 LKELQHSLE 316 (562)
T ss_pred HHHHHHHHH
Confidence 333333333
No 102
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.59 E-value=15 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.+|+.+++..+.-+.+|+.+|..+...-....++. .+-.+..+|+.++..++.++..+..
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555554442222221221 1233445555555555555554443
No 103
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.37 E-value=8.9 Score=33.29 Aligned_cols=9 Identities=11% Similarity=0.456 Sum_probs=4.0
Q ss_pred hhHHHHHHH
Q 019419 209 FKDVQKLIA 217 (341)
Q Consensus 209 ~kdiqkl~a 217 (341)
+.|++.|.+
T Consensus 105 v~DlK~myr 113 (120)
T PF12325_consen 105 VQDLKEMYR 113 (120)
T ss_pred HHHHHHHHH
Confidence 344444444
No 104
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.12 E-value=18 Score=39.06 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=56.3
Q ss_pred eEEEeecCccccccccCccccccccCCCCcccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019419 94 KVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVK---DLQSEVFALKAEFVKAQSLNAE 170 (341)
Q Consensus 94 ~v~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~kel~EKLEesE~Lik---eLQsEL~ALkkELekLqerNeE 170 (341)
-|.+-+-|+++-+--+-++... -++|..++-| .+.++.-|-.++--|.-+. ..+-=+..|+..|.++...|+.
T Consensus 245 ~v~ap~sn~~vr~ks~~p~~vl--~~stp~~~~d--~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~ 320 (655)
T KOG4343|consen 245 VVPAPSSNSPVRGKSSVPKPVL--QSSTPNVGSD--IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQ 320 (655)
T ss_pred cccCCCCCcccccccccccccc--cCCCCCCccC--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777655555555332 3456667665 5666666666665554442 2222234677777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 171 LEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 171 LEkENkELqqQLa~aEaEI 189 (341)
|.+||.-|+.+|+.++.+-
T Consensus 321 Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 321 LKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHhhhHHHHHHHHHHhhcC
Confidence 8888888888887777643
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.01 E-value=19 Score=35.69 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.++++..++.++..+....++...+..+++.+++.++
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.97 E-value=20 Score=32.07 Aligned_cols=43 Identities=30% Similarity=0.233 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
.++.-...++|..++.-...|+..|.+|..+|...+.-...+.
T Consensus 2 e~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLI 44 (140)
T ss_pred cHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455566677777777666666666666666655444444443
No 107
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.82 E-value=21 Score=28.31 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
..+-+|+++|-.-+..+.+| ++.+.+.+.+.+.|+.+.+.|..+|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443 344444344444555554455444443
No 108
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.82 E-value=17 Score=34.71 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAE 160 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkE 160 (341)
+++|..|+.+.+.+..++..++..++.|
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~e 30 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENE 30 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665544
No 109
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.80 E-value=22 Score=33.98 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
..|.|.+....|+.|++.|.++..|..+.++....|..|...|..++.....+
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666666666666666666655555
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.79 E-value=15 Score=38.24 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+...+.++...+..+++++.++.++..++.+....+..+++.+.++...|
T Consensus 54 i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 54 IREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 33334444444444455555555544444444444444444333333333
No 111
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.36 E-value=37 Score=29.43 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+....++++++..|..+++..+.-.++|-++...|+..+..+.++..++
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666666554333
No 112
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.22 E-value=20 Score=31.52 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
-|.|+.-.+....-++.|.+.|..+...+++..+..+..+++..+++..++....++.++
T Consensus 49 ~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555556666788888888888888888888888888888888887777766443
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.21 E-value=21 Score=34.54 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.++.+|+.|+..|+++...|+.+..+|...+..++.++..|.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777777777777777766666666555
No 114
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=77.05 E-value=9.3 Score=36.95 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 168 NAELEKQNKKLVEDLVA 184 (341)
Q Consensus 168 NeELEkENkELqqQLa~ 184 (341)
...||.|...|+.|+++
T Consensus 124 IsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 124 ISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455554445555543
No 115
>PRK04325 hypothetical protein; Provisional
Probab=77.03 E-value=22 Score=28.29 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
..+-+|+.+|-.-+..|.+|. ..+...+.+.+.|+.+.+.|..+|...
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN-------~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLN-------ATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555554444444444 444444444455555555555555443
No 116
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.96 E-value=22 Score=34.73 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHhhccccchhccc
Q 019419 130 DKKKKEFEEKLMLS----ENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNKKLVE--DLVAAEAKIASLSSREQREAV 201 (341)
Q Consensus 130 ~~~~kel~EKLEes----E~LikeLQsEL~ALkkELekLqerNeELEk--ENkELqq--QLa~aEaEI~sL~~~~~~~~~ 201 (341)
.++++.++.+|++. ++-+..|+.++.+|+.++...++...-|-. ++.|.-. +++.+..+|.+|+...++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd--- 138 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD--- 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34445555555443 345568888888888888887777666653 4444433 334555566666654443
Q ss_pred cccCCchhhHHHHHHHHhhhhhhh
Q 019419 202 GEYQSPKFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 202 ~e~q~~~~kdiqkl~a~KLe~s~~ 225 (341)
...+|..+++++-.+|++-++
T Consensus 139 ---Eldel~e~~~~el~~l~~~~q 159 (258)
T PF15397_consen 139 ---ELDELNEMRQMELASLSRKIQ 159 (258)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777666
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.91 E-value=18 Score=33.58 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhccc
Q 019419 178 LVEDLVAAEAKIASLSS 194 (341)
Q Consensus 178 LqqQLa~aEaEI~sL~~ 194 (341)
+..+......+|..|++
T Consensus 150 ~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 150 LKEKKEAKDKEISRLKS 166 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444443
No 118
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=76.81 E-value=1.6 Score=45.52 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=5.9
Q ss_pred HHHHHHhhhh
Q 019419 289 QLYHSLTKQV 298 (341)
Q Consensus 289 EfY~sL~kr~ 298 (341)
-+|.+|..-+
T Consensus 266 AlFaqlNqGe 275 (480)
T KOG2675|consen 266 ALFAQLNQGE 275 (480)
T ss_pred HHHHHHhccc
Confidence 3666666554
No 119
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.76 E-value=8.2 Score=29.14 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
..+.+++.++..++.+++.|+.++.+|+.+++.+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555554444
No 120
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=76.61 E-value=4.4 Score=37.16 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.+++.+|-.+=+-...||+|| .|-+.|+..++.|..|..+|+++|
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555655555555666666 334455555555555666666555
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.56 E-value=30 Score=29.71 Aligned_cols=7 Identities=43% Similarity=0.823 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 019419 215 LIANKLE 221 (341)
Q Consensus 215 l~a~KLe 221 (341)
+|-.-||
T Consensus 123 lLh~QlE 129 (132)
T PF07926_consen 123 LLHDQLE 129 (132)
T ss_pred HHHHHHh
Confidence 4444333
No 122
>PRK00736 hypothetical protein; Provisional
Probab=76.35 E-value=21 Score=28.00 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
...+.+|+++|..-+..+.+|...|..... +.+.|+++...|..+|..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~-------~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWK-------TVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555554444444 445555555555555544
No 123
>PRK00846 hypothetical protein; Provisional
Probab=75.96 E-value=18 Score=29.44 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 127 ~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
......+-+|+.+|..-+..+.+|...+... +...+.|+.+.+.|..+|...+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~q-------q~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADA-------RLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666655555555554444433 3344444455445555454444
No 124
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.92 E-value=35 Score=33.83 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhc
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk----ENkELqqQLa~aEaEI~sL 192 (341)
.|...++....+...|......|..|+..+++..++++. +...++.+|.....++...
T Consensus 162 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~ 223 (312)
T smart00787 162 LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK 223 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666667777777777777766653 5555555555555555333
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.68 E-value=25 Score=34.02 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhh
Q 019419 285 PSFAQLYHSLTK 296 (341)
Q Consensus 285 PevVEfY~sL~k 296 (341)
|++..||+-+++
T Consensus 174 ~ell~~yeri~~ 185 (239)
T COG1579 174 PELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHh
Confidence 789999999988
No 126
>PRK03918 chromosome segregation protein; Provisional
Probab=75.37 E-value=16 Score=39.37 Aligned_cols=12 Identities=0% Similarity=0.099 Sum_probs=6.4
Q ss_pred chHHHHHHHHHh
Q 019419 284 TPSFAQLYHSLT 295 (341)
Q Consensus 284 aPevVEfY~sL~ 295 (341)
.-.+++++..+.
T Consensus 830 ~~~l~~~l~~~~ 841 (880)
T PRK03918 830 RRKLVDIMERYL 841 (880)
T ss_pred HHHHHHHHHHHH
Confidence 335666655553
No 127
>PRK04325 hypothetical protein; Provisional
Probab=75.34 E-value=20 Score=28.55 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.-+.+||.+++-+..=++.|.+.....++++..|+.+|..+..++.++.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34467788888888777777777777777788888888888877776655
No 128
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.30 E-value=27 Score=32.60 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVK--------------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~Lik--------------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..++++|++.|..+.+.++ .++.+|..|...+..+-.+++.++.....|..++..++.++...+
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777776665444 456666666666666667777777777777777777777774444
No 129
>PHA01750 hypothetical protein
Probab=75.21 E-value=11 Score=30.49 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++|+..|..|+..+..+.+.|+.+..++..+++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 778888888888888888888888777777765
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.16 E-value=29 Score=30.19 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFA 156 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~A 156 (341)
++++|.-.+..++.+..||..
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 131
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.72 E-value=18 Score=39.12 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELE 172 (341)
.|+.+++....|++.++..+++|+
T Consensus 298 ~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 298 MLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555543
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.61 E-value=19 Score=41.32 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN--------AELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerN--------eELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
+-++++++...++.++.++.+++.+.+.+..+..+. .+++.+...|..+++.++.++.+|..-
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666655555555555554433333 333334455555555555555555543
No 133
>PRK00736 hypothetical protein; Provisional
Probab=74.55 E-value=27 Score=27.36 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.-+.+|+.+++.+..=++.|.+.....++++..|+.+|..+..++.++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777766666666655555566666666666666666664443
No 134
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.53 E-value=28 Score=32.96 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA----KIASLSSR 195 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa----EI~sL~~~ 195 (341)
+.++..+|+.....+..++.++..|++++.........|+.+...|+.+|..+.. ++..|...
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 5556666666666667777777777777776666666666666666666654433 45555543
No 135
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.49 E-value=18 Score=35.92 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
-+.+|...|.++|+--+.-=-.-++|.+|-..+.=+.+.|.....+|+..+..+..++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666543333233344555555554444555444444444444444443
No 136
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=74.46 E-value=39 Score=31.13 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+|...|.+..++..++...|-+.|..+..+.
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~eLv~eS 142 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLMELVSES 142 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555566666666666666666666655554
No 137
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=74.22 E-value=44 Score=28.66 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.9
Q ss_pred HHHHhhhhhhhh
Q 019419 215 LIANKLEHSIVM 226 (341)
Q Consensus 215 l~a~KLe~s~~~ 226 (341)
.|..+|+.....
T Consensus 96 ~l~~~L~~~~~e 107 (150)
T PF07200_consen 96 ALLARLQAAASE 107 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 138
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=74.07 E-value=21 Score=28.23 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+..+..|++.++++..++......+..|-.|+...-.+|.-+..+|..|++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888888888888888877774
No 139
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.04 E-value=19 Score=39.46 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~~~~ 196 (341)
++.+-.+||.|.+.|+.+|..++.++..|...-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999999999999988887633
No 140
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.91 E-value=23 Score=28.04 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++-+.+|+.+++.+..=++.|.+.....+.++..|+.+|..+..++.++..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556678888888888877777777777778888888888888888766654
No 141
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.83 E-value=16 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEk 173 (341)
++++++-.+...+.-++.+|++|.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333
No 142
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.28 E-value=29 Score=37.40 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.....+-+.+|++.++.++++..++..+..++..+......++.+..+.+.+...++.+.
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555566666666677777777777777777766666666666666666666666665
No 143
>PRK04406 hypothetical protein; Provisional
Probab=73.05 E-value=35 Score=27.33 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.-+.+|+.+++.+..=++.|.+.....++++..|+.+|..+..++
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444444444444444444444444444
No 144
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=72.87 E-value=1.1 Score=44.23 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhhhh
Q 019419 284 TPSFAQLYHSLTKQV 298 (341)
Q Consensus 284 aPevVEfY~sL~kr~ 298 (341)
.+..-.+|-.|.+-+
T Consensus 259 ~~~~~AlFaeLN~G~ 273 (312)
T PF01213_consen 259 SGGMSALFAELNQGE 273 (312)
T ss_dssp ---------------
T ss_pred cccHHHHHHHHhccC
Confidence 456667777777655
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.84 E-value=14 Score=34.13 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
++.++..+.+..+.+..++..+...|..-|..+....++|++
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555543
No 146
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.72 E-value=18 Score=34.40 Aligned_cols=62 Identities=27% Similarity=0.331 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+..|.+++...+.-...|+.+...+..+...|.......+.+...|..++..+...|..|..
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555555655555555555555555555555666666677766666665553
No 147
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.65 E-value=31 Score=30.40 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+++|..+|+-+..-.++..-=..+.++|+..++.....+..+...++.-+..++.+|..|.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444443333333222222233444444444445555555566666666666665554
No 148
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.59 E-value=29 Score=28.73 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|+..|.-|+..=.-|.-|+.|++.+++.|..|..++..+.+.-..++.+...|+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444455667778888888888888777775555555555555554
No 149
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=72.53 E-value=34 Score=33.73 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
..++..|..+|.+.......++.++..+.+....+....+.+..|+......-..++.=|..|+-++.
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk 88 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNK 88 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666777766666666666666666666666666555666666666665443
No 150
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.51 E-value=40 Score=32.88 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=9.2
Q ss_pred HHHHHhhhhhhhhhh
Q 019419 214 KLIANKLEHSIVMTD 228 (341)
Q Consensus 214 kl~a~KLe~s~~~~~ 228 (341)
.+..+++|.|.+.-+
T Consensus 135 e~~~kRkQdsa~~~e 149 (246)
T KOG4657|consen 135 ENAGKRKQDSADIHE 149 (246)
T ss_pred HHHHHHHhhhhccHH
Confidence 356667777766444
No 151
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=72.49 E-value=21 Score=37.83 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSE-------NLVKDLQSEVFALKAEFVKAQSLNAELEKQNK-----------KLVEDLVAAEAKI 189 (341)
Q Consensus 132 ~~kel~EKLEesE-------~LikeLQsEL~ALkkELekLqerNeELEkENk-----------ELqqQLa~aEaEI 189 (341)
+++.|+++|+-.- .|....+-++++.+.||+-|...+..-+.+.+ -|..+|+.+++.|
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I 555 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEI 555 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence 3555555555332 23445588889999999999877754443222 3556666666555
No 152
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.42 E-value=6.8 Score=30.72 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
|++-|++.+..|.++|..||.||.-|++..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455566666677777777777777766543
No 153
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.22 E-value=47 Score=31.61 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++|+..|+..-.-+..|...+...+.-.+...+++++|..+..-|+.++..+..++..++.
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555555555555666666666655555566666666655543
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.22 E-value=19 Score=41.34 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+.++|+++|++..+.+.+--+++.++..++.++..+......++..|..++..+..+...+.
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~ 740 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQ 740 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4568899999999999999999999999999888888888888888888888888887776555
No 155
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.89 E-value=22 Score=37.11 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 019419 208 KFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 208 ~~kdiqkl~a~KLe~s~~ 225 (341)
++..+|+-.+.+|+....
T Consensus 368 ~Ls~~R~~~a~~l~~~v~ 385 (563)
T TIGR00634 368 ALSLIRRKAAERLAKRVE 385 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666777776655
No 156
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.84 E-value=31 Score=36.51 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=19.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 124 ~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
|+-|-+.+.+..|--++.+.+.....|..+=+.|++|.++|+.
T Consensus 52 iegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 52 IEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444444444444444444444433
No 157
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=71.77 E-value=28 Score=28.06 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNA------------ELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNe------------ELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..++..||.|+.+++.++..+.++.. .|+.+.+.|-.+++.+..+|..|.
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666665544444 445566677777777777776664
No 158
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.55 E-value=29 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccch
Q 019419 174 QNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
-..+|+.++...|.+|.+|+++..
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 445788888888889988887543
No 159
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.52 E-value=39 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.+|...++.+....+.|+.||..|++++.....+-..|.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666665554444
No 160
>PRK02119 hypothetical protein; Provisional
Probab=71.48 E-value=26 Score=27.87 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.++=+.+|+.+++.+..-++.|.+.....++++..|+.+|..+..++..+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666666655555556666666666666666654444
No 161
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.04 E-value=47 Score=27.27 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|.-|+-|++.+++.|+.|..|..++++.-+.++.+..+|+
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666665555554
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.70 E-value=21 Score=39.00 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=12.4
Q ss_pred cCccccccccccCC-CCccccc
Q 019419 19 ATTTFRLRANSKTR-ESPKQEA 39 (341)
Q Consensus 19 ~~~~~r~r~~sk~~-~~~~~~~ 39 (341)
|-|-.+++++-.|+ -+|....
T Consensus 301 P~~V~KiAasf~A~ly~P~~dL 322 (652)
T COG2433 301 PETVKKIAASFNAVLYTPDRDL 322 (652)
T ss_pred hHHHHHHHHHcCCcccCCcccC
Confidence 33334777777774 5565555
No 163
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=70.57 E-value=32 Score=34.97 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
++++|.++|+..++.+.+++..+..+.
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555544443
No 164
>PRK12704 phosphodiesterase; Provisional
Probab=70.52 E-value=50 Score=34.85 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=8.7
Q ss_pred ccccchhhccchh
Q 019419 318 HSSIVGEIQNRSA 330 (341)
Q Consensus 318 ~~~mIGEIeNRS~ 330 (341)
--.|+|-++-|+.
T Consensus 319 i~~ll~~l~~R~~ 331 (520)
T PRK12704 319 LIKLLGRLKYRTS 331 (520)
T ss_pred HHHHHHHhhccCc
Confidence 3467777777773
No 165
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.13 E-value=52 Score=28.91 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELq 179 (341)
+++++.++.+++++-.+..+.=.++..=...|..|.++.+.|+.-....+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~ 77 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE 77 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999988888877777777777777776433333
No 166
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.11 E-value=49 Score=31.30 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN--AELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerN--eELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
....|..++.-.++-++.|+..+.....|+..|..-. ++|++++.+|+.++......|.+|++.-+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3555666666666777777888877778888766544 78888999999999999999999987655
No 167
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.05 E-value=23 Score=25.98 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
|....-|+...++|..+...+...|+.|..|...|...+.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445556666666666666666666777766666666553
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.99 E-value=15 Score=35.09 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
-+..|+..+.+-..-+..++.+.+.|+.|+.+|+++++...-++.++..
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3345555555555555667778888888888888888888877766663
No 169
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.89 E-value=28 Score=32.37 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--------QNKKLVEDLVAAEAKI 189 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk--------ENkELqqQLa~aEaEI 189 (341)
..+.-|.+.|.-+++-..+++.++.....++..+.+.+..|+. |..+|..+|+.++.++
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 3455555666655555555555555555555555555544442 3445555555555544
No 170
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.69 E-value=50 Score=30.87 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK-------AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELek-------LqerNeELEkENkELqqQLa~aEaEI 189 (341)
+....++++..++-+.+|+.+|..+...+.. ...+.+.++..++.|..+|..++.-+
T Consensus 129 Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 129 LERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666655544433 33344455555666666665554433
No 171
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.68 E-value=30 Score=29.04 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKA--QSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekL--qerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+.++..++-...+.+.+..+..++..+ .+....|+.+..++++++....+++.++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666666667788888888888776 67777778888888888888888876654
No 172
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.49 E-value=26 Score=32.25 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
.+..|...++..+.+|+.+|.+|+.++..++.++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555543
No 173
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=69.16 E-value=40 Score=27.44 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA---EFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkk---ELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
+.+..++..+++....-.+.+-.+|..+.. +...+..+...+..+...+..++..++.++.
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888877777777776665 4666666777777777777777777776663
No 174
>PRK00846 hypothetical protein; Provisional
Probab=69.10 E-value=42 Score=27.37 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+.-+.+|+.+++-...=++.|.+.....+.++..|+.++..+..++.++.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567777777776666666666666777777888888777777766654
No 175
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=68.87 E-value=37 Score=39.17 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+++.|+++|++-......++..+.+...++..+.....+++.++.+|+.+|+.+.++..+.+
T Consensus 148 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1123)
T PRK11448 148 QQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETS 211 (1123)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567777888876667777778888888888888888888888888888888887776665443
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.66 E-value=26 Score=37.13 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..++-.++.+.+++..++++..+...++++|+.|...+..-..++..+..
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444566666677777777777766666777666666555555544443
No 177
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=68.54 E-value=8.9 Score=30.04 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEV----FALKAEFVKAQSLNAE 170 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL----~ALkkELekLqerNeE 170 (341)
+.++.-.+..+.+||.|= ..|..|++.|+.+|.+
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKD 39 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345666677777776653 3344444444444433
No 178
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.54 E-value=52 Score=30.66 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
.|..+-..+...|-+++..+..|++++..++++...
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455555555555555544433
No 179
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.24 E-value=26 Score=35.84 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 019419 171 LEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 171 LEkENkELqqQLa~aEaEI~sL 192 (341)
|..+.++|..++..++.++..+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444333
No 180
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.23 E-value=44 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
+.-+..|..+-..+..++..||+|+.-|..++..+.
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443333333333333
No 181
>PF14282 FlxA: FlxA-like protein
Probab=68.16 E-value=52 Score=27.58 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQS----LNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqe----rNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+.|..|+.+|..|..+|..|.. ..+.-......|+.++..++++|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655 2234444666666667777777655553
No 182
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.11 E-value=45 Score=29.87 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHhhccccch
Q 019419 132 KKKEFEEKLMLSENLVKDLQS---EVFALKAEFVKAQSLNAELEKQNK--KLVEDL-VAAEAKIASLSSREQ 197 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQs---EL~ALkkELekLqerNeELEkENk--ELqqQL-a~aEaEI~sL~~~~~ 197 (341)
.++.+..+|....+.+.+|+. .+..|+.+++.|+..|.....+.. --..++ ..++..|..+.+++.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~ 99 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNP 99 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 466777777777777777766 666677777777777764433211 111122 244455666665543
No 183
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.06 E-value=42 Score=34.63 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkEL 161 (341)
...+++|+++|+..+..+..++.++.++...+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666555555444
No 184
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=67.90 E-value=76 Score=31.72 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekL 164 (341)
+-++.+.|.+-+..+.+++.++..|+.++..+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888888877777543
No 185
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.82 E-value=47 Score=33.20 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLV----KDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 136 l~EKLEesE~Li----keLQsEL~ALkkELekLqerNeEL 171 (341)
.+|+|-+-+.-. .+|+.+|.++...+..+..+|+.|
T Consensus 32 ~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 32 MREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 344444444444444444444444
No 186
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.80 E-value=50 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++...|...-.+|.+|+.+...|+.++..+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555655555555555443
No 187
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=67.70 E-value=51 Score=27.05 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
....|..++.+|+.-|..+..+.+..+.||.+|.++=..+..=|..|-
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888888887777777766665554
No 188
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.63 E-value=47 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
++|..++.....++.+...|+.++..+...+.
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554443
No 189
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.59 E-value=29 Score=36.91 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
++++.++|+..++-+.+++.++..+..++..+.++.+.+
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333333333333333333333333
No 190
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=67.40 E-value=64 Score=34.08 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=4.4
Q ss_pred cchhhccchh
Q 019419 321 IVGEIQNRSA 330 (341)
Q Consensus 321 mIGEIeNRS~ 330 (341)
++|-+.=|+.
T Consensus 316 ~l~~l~~r~~ 325 (514)
T TIGR03319 316 LLGRLKFRTS 325 (514)
T ss_pred HHHHhhcccc
Confidence 3444444433
No 191
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=67.27 E-value=28 Score=35.25 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk--ENkELqqQLa~aEaEI~sL~ 193 (341)
...++.-=|+.++++.+.-+.+++.||..+++.|.=.++.|..||. .-.++...+-...+.|..|.
T Consensus 172 ~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~~y~ksRR~i~Nl~ 239 (323)
T PF08537_consen 172 SNSDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDSEYVKSRRDIKNLQ 239 (323)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHhhhhccccc
Confidence 3346777778888888888888888888888888888888888886 44466667777777776665
No 192
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.27 E-value=15 Score=30.84 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
....++.++..++.+|+.|+.+|..|+.++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555554443
No 193
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.11 E-value=35 Score=28.05 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
+..++..|....+.++.+|..|.++|...+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446666677777777777777777776554
No 194
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.09 E-value=21 Score=41.53 Aligned_cols=90 Identities=26% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDV 212 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdi 212 (341)
+++++.+|...+..+.+++.+++.|..++..+.....+++.+.++-.+-+.-+..++..+.. ..-..+++.-+|+..
T Consensus 937 i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~---~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen 937 IAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKS---ELENIKKSENELKAE 1013 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 33344444444444445555555555554444444444444433333333333333333331 222333444455554
Q ss_pred HHHHHHhhhhhhh
Q 019419 213 QKLIANKLEHSIV 225 (341)
Q Consensus 213 qkl~a~KLe~s~~ 225 (341)
|--+-.|||....
T Consensus 1014 rId~~~K~e~~~~ 1026 (1293)
T KOG0996|consen 1014 RIDIENKLEAING 1026 (1293)
T ss_pred hccHHHHHHHHHH
Confidence 4445555555433
No 195
>PRK11519 tyrosine kinase; Provisional
Probab=67.00 E-value=56 Score=35.36 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=8.4
Q ss_pred HHHHHHHHhhh
Q 019419 287 FAQLYHSLTKQ 297 (341)
Q Consensus 287 vVEfY~sL~kr 297 (341)
+.|-||+|...
T Consensus 506 ~~Ea~r~lrt~ 516 (719)
T PRK11519 506 AIEAIRSLRTS 516 (719)
T ss_pred HHHHHHHHHHH
Confidence 78999998643
No 196
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=66.96 E-value=30 Score=34.02 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQS 152 (341)
Q Consensus 134 kel~EKLEesE~LikeLQs 152 (341)
++|++++......+..|..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4566666655555555544
No 197
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.92 E-value=30 Score=38.46 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+.....+++++|+..+..+.+|+..+.....+++.++.+..++|....+|+.+|..+..
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447788889998888888888887777777777777777777777777777765443
No 198
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.91 E-value=57 Score=33.00 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSEN-------LVKDLQSEVFALKAEF 161 (341)
Q Consensus 130 ~~~~kel~EKLEesE~-------LikeLQsEL~ALkkEL 161 (341)
..++.+++.+|..... .+.+++.++.+++..+
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 4456666655554432 2335555555555443
No 199
>PRK10869 recombination and repair protein; Provisional
Probab=66.65 E-value=34 Score=36.12 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 019419 208 KFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 208 ~~kdiqkl~a~KLe~s~~ 225 (341)
++...|+-.|++|+....
T Consensus 363 ~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 363 KLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777888888776
No 200
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.56 E-value=48 Score=30.07 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|...|..+.+.|+.+|+.|..++..+..++..|.
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 34444555556666666666655555444444444
No 201
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.54 E-value=41 Score=33.78 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALK-----AEFVKAQSLN--AELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALk-----kELekLqerN--eELEkENkELqqQLa~aEaEI 189 (341)
.-+.|+.+..|..-+..|.+|++||...+ +|.++...|. .+..+|+++|++=+++.+.-+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45689999999999999999999998754 7777765555 444568888888888887655
No 202
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=66.21 E-value=33 Score=34.92 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
.++.++++..++.+.+++.++..+++.+..+..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 566777777777777777777777777666554
No 203
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.08 E-value=42 Score=31.86 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 126 ~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
=|...+.|.=|...|.+++..+...-++|.+|+..+..+...++..+.+...|+..+.....++.
T Consensus 5 vCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE 69 (202)
T PF06818_consen 5 VCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELE 69 (202)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Confidence 35567778889999999999999888999999888888777777777777777776665555543
No 204
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.01 E-value=35 Score=38.92 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.+..+.+++......+.++++++..++.++..+..+.+.|..+...+..++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 427 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544444444444333333333
No 205
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=65.71 E-value=57 Score=34.56 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkEN 175 (341)
|--|.|+-.-+-..++.||+|..-|.+.|+.-.+..++||.-.
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyC 169 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYC 169 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHH
Confidence 6667788888888999999999999999999999999998533
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.57 E-value=41 Score=35.65 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
+++...+++.++..+.+|+...++.|..|
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 207
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=65.51 E-value=34 Score=34.65 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
|++|.--=++.|.+..+|+.+-..+...|..+.++|+.+-+|...|+.|+.
T Consensus 14 i~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyr 64 (328)
T PF15369_consen 14 IKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYR 64 (328)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444445667777888888888889999999999888887777776553
No 208
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=65.51 E-value=17 Score=30.85 Aligned_cols=40 Identities=30% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.++.+++++++|++.+..++..|+.|+++|+...+..+..
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~ 93 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEER 93 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4566666777777777777777777777777774444433
No 209
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=65.09 E-value=60 Score=32.12 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+.....++...+.|++.+.+...+.|++.++++.++....+.+..|.
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666677777777766666665554
No 210
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.04 E-value=43 Score=33.64 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..++..|..||....+.+...+.|+..|..++..++..|.++.
T Consensus 212 n~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 212 NQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555444433
No 211
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=65.03 E-value=31 Score=26.78 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.++..++..+..+.++.+.||.....+..++..++.++.++.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 212
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=64.89 E-value=44 Score=29.80 Aligned_cols=51 Identities=31% Similarity=0.409 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++.+|++-.-.++..++.++.+++.|...+.++...++.....|++-|...
T Consensus 37 ~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 37 EIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556667788888888888888888888888887777777666543
No 213
>PRK14127 cell division protein GpsB; Provisional
Probab=64.81 E-value=48 Score=28.56 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++..+..|+..|++++..|+.++.+++.++.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444444444333
No 214
>PRK14127 cell division protein GpsB; Provisional
Probab=64.71 E-value=22 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+.+.+...+.+|+.++..|+.+|..++.++....
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44455556666666666666666666666665443
No 215
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.43 E-value=33 Score=32.71 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+++.+.+||.+++---.+.+..+..|.+++..|...+..+..++..++..|+..-..+
T Consensus 143 e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 143 EEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777777776666666777777777777777666666666666666666555443
No 216
>PRK11020 hypothetical protein; Provisional
Probab=64.35 E-value=17 Score=31.99 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccccchhccccc
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEK-----QNKKLVEDLVAAEAKIASLSSREQREAVGE 203 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEk-----ENkELqqQLa~aEaEI~sL~~~~~~~~~~e 203 (341)
+++||..|++.|..++.....++. -..++..+++.++.+|.+|++....+.+.|
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske 61 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKE 61 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555543 345677777888888877776444433333
No 217
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.18 E-value=28 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 155 FALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 155 ~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.++..++..++.+.+.++.||.+|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 218
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.18 E-value=21 Score=35.64 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..++|-.+-|+ -+....+..+-+-++|..|++.|..+|++|..+...|..+++.++.-|
T Consensus 227 ~~~rkr~qnk~-AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 227 KLRRKRQQNKA-AATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 455566666666666666666666666666666555555555555444
No 219
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=64.07 E-value=31 Score=30.41 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKD-----LQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 139 KLEesE~Like-----LQsEL~ALkkELekLqerNeELEkENkELq 179 (341)
|++..+.|++. .+-|++-|+..+..|.++|..||.||.-|+
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554442 255555555555555555555555555444
No 220
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=51 Score=31.79 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=14.2
Q ss_pred cCCchhhHHHHHHHHhhhh
Q 019419 204 YQSPKFKDVQKLIANKLEH 222 (341)
Q Consensus 204 ~q~~~~kdiqkl~a~KLe~ 222 (341)
+.+.++.++++..|.|||-
T Consensus 157 keleel~~~~~s~~~klel 175 (222)
T KOG3215|consen 157 KELEELDDLNNSTETKLEL 175 (222)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 4467788888888888764
No 221
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=63.35 E-value=43 Score=38.18 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
..+.++.++-+|.+.++-+..|++|+..|+.-+..++++..+-+.|..++..++
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srl 150 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRL 150 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345566777777777777777777777776666655555544444433333333
No 222
>PRK02224 chromosome segregation protein; Provisional
Probab=63.25 E-value=52 Score=35.70 Aligned_cols=9 Identities=0% Similarity=-0.296 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 019419 286 SFAQLYHSL 294 (341)
Q Consensus 286 evVEfY~sL 294 (341)
++++-|+..
T Consensus 468 ~~~~~~~~~ 476 (880)
T PRK02224 468 ETIEEDRER 476 (880)
T ss_pred hhHHHHHHH
Confidence 344334433
No 223
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.16 E-value=70 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
|++...+.+..|.+++.+|..++..++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 224
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.10 E-value=45 Score=40.76 Aligned_cols=60 Identities=30% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
.+++.++++..+.....|+.+...+..++..+.+..++++....+++.++..++.+|..|
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l 969 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL 969 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555544444444444444444333
No 225
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=63.09 E-value=59 Score=27.27 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFV-KAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 151 QsEL~ALkkELe-kLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.+|.+|++--+ .|..+.++|+.++..|..++..+..++
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777764443 366666666666666666666665555
No 226
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=62.84 E-value=36 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
|...+..+..++..+...++.|+...+++..++..++.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555555555555555555555544444443
No 227
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.70 E-value=48 Score=40.52 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDV 212 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdi 212 (341)
...+...|++..+.+..++.+-..+..++..+..+..++.+-..+|+..+..++.++..|+ ...++...+.+..+-+++
T Consensus 1472 l~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ-~aLeElE~~le~eE~~~l 1550 (1930)
T KOG0161|consen 1472 LQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQ-AALEELEAALEAEEDKKL 1550 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHH
Confidence 4444445555555555555555555555555555555555544455554555555554444 233444445555555554
Q ss_pred H
Q 019419 213 Q 213 (341)
Q Consensus 213 q 213 (341)
+
T Consensus 1551 r 1551 (1930)
T KOG0161|consen 1551 R 1551 (1930)
T ss_pred H
Confidence 4
No 228
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.51 E-value=72 Score=29.00 Aligned_cols=9 Identities=11% Similarity=0.387 Sum_probs=4.5
Q ss_pred CchhhHHHH
Q 019419 206 SPKFKDVQK 214 (341)
Q Consensus 206 ~~~~kdiqk 214 (341)
+..|.++..
T Consensus 164 ~~~~er~e~ 172 (221)
T PF04012_consen 164 MDSFERMEE 172 (221)
T ss_pred HHHHHHHHH
Confidence 445555544
No 229
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=62.47 E-value=40 Score=29.18 Aligned_cols=37 Identities=41% Similarity=0.533 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVK----------DLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 137 ~EKLEesE~Lik----------eLQsEL~ALkkELekLqerNeELEk 173 (341)
++||++++.+++ ..++++..|++++-.+..+.-+|+.
T Consensus 3 EeKLqISKeLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLel 49 (108)
T PF14739_consen 3 EEKLQISKELVDLQIETNRLREQHEAEKFELKNEVLRLENRVLELEL 49 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888877664 4566666666666666666655554
No 230
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.36 E-value=37 Score=37.59 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 166 SLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 166 erNeELEkENkELqqQLa~aEa 187 (341)
..+.+||.||.-|+.++..++.
T Consensus 97 ~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 97 QDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666655544
No 231
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=61.98 E-value=7.5 Score=41.86 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCccc
Q 019419 235 INTPPSEPKIPIRNAA 250 (341)
Q Consensus 235 ~~~~~~ppp~p~P~~~ 250 (341)
.+-+..|++||.|..+
T Consensus 224 ~~~~~~P~~P~~P~~~ 239 (817)
T KOG1925|consen 224 APEPKEPLIPASPKEL 239 (817)
T ss_pred CCCCCCCCCCCChhcc
Confidence 3444445444444444
No 232
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.89 E-value=94 Score=33.74 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
.++.+.+...+-..+|+.++..++.++.......+.+
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443333333
No 233
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=61.81 E-value=1.1e+02 Score=30.95 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 144 ENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELek 163 (341)
+-+.++|..+|.+|..|...
T Consensus 105 E~ltn~L~rkl~qLr~EK~~ 124 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVE 124 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33556777777766655443
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.75 E-value=77 Score=34.97 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=6.2
Q ss_pred EEEeecCcccc
Q 019419 95 VFGRSLNRPVV 105 (341)
Q Consensus 95 v~~~~~~r~~~ 105 (341)
++.+....|.+
T Consensus 512 lL~r~~~qPil 522 (717)
T PF10168_consen 512 LLQRSSSQPIL 522 (717)
T ss_pred HhcCCCCCCee
Confidence 45566666654
No 235
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=61.72 E-value=12 Score=34.33 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcc
Q 019419 154 VFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 154 L~ALkkELekLqerNeELEk---ENkELqqQLa~aEaEI~sL~ 193 (341)
|+.+...+.+..++|.-||. |...|+.++++++-++..|+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888886 55568888889998888887
No 236
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=61.66 E-value=13 Score=41.43 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 019419 148 KDLQSEVFA 156 (341)
Q Consensus 148 keLQsEL~A 156 (341)
++|+.++.+
T Consensus 135 e~l~~Q~~s 143 (830)
T KOG1923|consen 135 EELQRQFQS 143 (830)
T ss_pred HHHHHHHHH
Confidence 344444444
No 237
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=61.60 E-value=51 Score=33.63 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDL 150 (341)
Q Consensus 133 ~kel~EKLEesE~LikeL 150 (341)
.+++..+++.....++.+
T Consensus 39 ~r~~~~~~~~l~~erN~~ 56 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNEL 56 (418)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444433333333
No 238
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.49 E-value=67 Score=31.60 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEK-------QNKKLVEDLVAAE 186 (341)
Q Consensus 133 ~kel~EKLEesE~Lik-------eLQsEL~ALkkELekLqerNeELEk-------ENkELqqQLa~aE 186 (341)
++.+.++++.++..+. .|+.+|...+.|+++.+.+...|+. |-..|+.+|..+-
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4555555555555444 4555566666777777777777763 5555555554443
No 239
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=61.49 E-value=14 Score=35.20 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=4.1
Q ss_pred CCCCCCCCCCc
Q 019419 265 PLPPPPPPRPP 275 (341)
Q Consensus 265 PpPPp~P~~~~ 275 (341)
|||||+-|+-+
T Consensus 189 ~pppp~~p~~~ 199 (225)
T KOG3397|consen 189 PPPPPMAPKMV 199 (225)
T ss_pred cccCCCCccce
Confidence 33333333433
No 240
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.43 E-value=32 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
|..+|......|..+...++.|.=.|..|...++.+..++.
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444455555554444443
No 241
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.40 E-value=1.2e+02 Score=30.20 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDL 150 (341)
Q Consensus 137 ~EKLEesE~LikeL 150 (341)
+.+|.++.+.+.||
T Consensus 148 ~~dl~e~~~~l~DL 161 (269)
T PF05278_consen 148 ESDLKEMIATLKDL 161 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 242
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.98 E-value=36 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
.|+..+..+..++..+....+.++++..+++.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333333333
No 243
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=60.91 E-value=36 Score=28.91 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.||+.+|.=...|-.-+.....+|+.+|+.|..+|.+.+.+...+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3566666655667777777788999999999999999888764443
No 244
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.80 E-value=73 Score=31.90 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=44.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 126 DGLMDKKKKEFEEKLMLSENLVK---DLQSE---VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 126 ~~~~~~~~kel~EKLEesE~Lik---eLQsE---L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.....||.+|-+.|...+.+.. .+=.. |..|+.+...+......|+....++..++...+.-+..+..
T Consensus 290 ~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~ 364 (388)
T PF04912_consen 290 DAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEE 364 (388)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777766666554 23333 34455666667777777887777888877777777766553
No 245
>PLN02678 seryl-tRNA synthetase
Probab=60.76 E-value=49 Score=34.51 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDL 150 (341)
Q Consensus 134 kel~EKLEesE~LikeL 150 (341)
++++.+++.....++.+
T Consensus 43 r~l~~~~e~lr~erN~~ 59 (448)
T PLN02678 43 RQRQFELDSLRKEFNKL 59 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334443333333333
No 246
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=60.61 E-value=48 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ 155 (341)
...++.+|+..+.-+..|+.++.
T Consensus 127 L~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 127 LSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444
No 247
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=60.60 E-value=1e+02 Score=27.53 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHhhccccchhcccccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVED-LVAAEAKIASLSSREQREAVGEY 204 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk----ENkELqqQ-La~aEaEI~sL~~~~~~~~~~e~ 204 (341)
++..+++.+.|+.+++...+.+..+...+..+........++-. +......+ +..++.+...+...-......|+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek 131 (167)
T PRK08475 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEV 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777766666666555555555555554444432 22222222 24555555444443333333333
Q ss_pred CCchhhHHHHHHHH
Q 019419 205 QSPKFKDVQKLIAN 218 (341)
Q Consensus 205 q~~~~kdiqkl~a~ 218 (341)
+.....-.+.|+..
T Consensus 132 ~~a~~elk~eii~~ 145 (167)
T PRK08475 132 RKMEREVVEEVLNE 145 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333334443
No 248
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.59 E-value=65 Score=35.75 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhccccccCCchh
Q 019419 174 QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~ 209 (341)
+..+..+++..+.+.+.++..+.+-...+++|--.+
T Consensus 201 ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~ 236 (716)
T KOG4593|consen 201 QLQEENQKIQELQASLEERADHEQQNAELEQQLSLS 236 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 334445555555566666677777777777774444
No 249
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=60.44 E-value=71 Score=30.26 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.0
Q ss_pred HHHHhhcc
Q 019419 186 EAKIASLS 193 (341)
Q Consensus 186 EaEI~sL~ 193 (341)
.++|..|.
T Consensus 101 ~~~i~~Lq 108 (193)
T PF14662_consen 101 VAEIETLQ 108 (193)
T ss_pred HHHHHHHH
Confidence 33343333
No 250
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.42 E-value=84 Score=36.37 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqer 167 (341)
++.+|+.+|.++.+++..+.+.
T Consensus 449 ~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 251
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.40 E-value=41 Score=31.88 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
++++...+|...-.|+..|++-|..|+.+|++|+.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666667778888888888877776654
No 252
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.02 E-value=34 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELq 179 (341)
.+++.++..++.++..++..|+.|+.|...|.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555666666666666666666666555544
No 253
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.90 E-value=55 Score=37.79 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ 155 (341)
..++++++++|+..+..+.+++..+.
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467777777766666665554444
No 254
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=59.69 E-value=1.2e+02 Score=30.04 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFV 162 (341)
Q Consensus 149 eLQsEL~ALkkELe 162 (341)
.++.++.+++..+.
T Consensus 286 ~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 286 RAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555544443
No 255
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=59.66 E-value=40 Score=35.47 Aligned_cols=61 Identities=26% Similarity=0.189 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 131 KKKKEFEEKLMLSENL--VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 131 ~~~kel~EKLEesE~L--ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
++++...+.|++.-.. ..++..++..+..|-.++-++..+|+++..+|..+|...+.+-..
T Consensus 160 ~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 160 DTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777765554 357777888888777778888888888888777777766665433
No 256
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.51 E-value=98 Score=29.17 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHH
Q 019419 155 FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (341)
Q Consensus 155 ~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~ 218 (341)
..+.........+...|......+...+..+-.++..|.. +......+.-...+++++.||..
T Consensus 76 ~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~e 138 (264)
T PF06008_consen 76 QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEE 138 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777765 22223333445567777776663
No 257
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.42 E-value=64 Score=28.96 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 170 ELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.++.|..+|+.+|+.++.++..|+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554
No 258
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=59.25 E-value=64 Score=29.60 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE--KQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE--kENkELqqQLa~aEaEI~sL~~ 194 (341)
+.-|++.++..++-+.+|+..+..+..++.- .+.|+ .|..++..+|..+++.|..+..
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs----Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVS----YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555544444332 12232 4667777777777777755543
No 259
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.91 E-value=68 Score=37.19 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|.+|...+.......+-|+.++..+..+++...++..+|+....++..++..+.+++.+++
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k 459 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELK 459 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHH
Confidence 6666666666677777888888888888888888888888888888888888888887776
No 260
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.83 E-value=50 Score=36.84 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
+++.++-+|.+++..+.+|+.+|..++
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 261
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=58.47 E-value=94 Score=32.65 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccccc
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL-------EKQNKKLVEDLVAAEAKIASLSSRE 196 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL-------EkENkELqqQLa~aEaEI~sL~~~~ 196 (341)
...|+...+....|+..+..|+.||...+.....| ......|..+|.....++..+....
T Consensus 294 k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 294 KKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Confidence 34444444444455555555555555544444443 3455677777777777766555433
No 262
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=58.33 E-value=7.7 Score=32.11 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019419 170 ELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 170 ELEkENkELqqQLa~aEa 187 (341)
.++.....|+..|..++.
T Consensus 57 ~~~~~~~~l~~~l~~aq~ 74 (131)
T PF05103_consen 57 ELREEEESLQRALIQAQE 74 (131)
T ss_dssp ------------------
T ss_pred hhhhHHHHHHHhhhhhhh
Confidence 333333334444433333
No 263
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.11 E-value=61 Score=23.78 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVA 184 (341)
Q Consensus 169 eELEkENkELqqQLa~ 184 (341)
..|+.+|..|.+++..
T Consensus 35 ~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 264
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=58.00 E-value=62 Score=31.48 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLN 168 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerN 168 (341)
++|+.+|.+++.+++....++
T Consensus 202 ~~Le~~ia~~k~K~e~~e~r~ 222 (259)
T KOG4001|consen 202 KELELKIAQLKKKLETDEIRS 222 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444443333333
No 265
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.45 E-value=6.8 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=9.2
Q ss_pred ccchhhccchhhhhhhhcccc
Q 019419 320 SIVGEIQNRSAHLLAVSIADI 340 (341)
Q Consensus 320 ~mIGEIeNRS~hLlAIK~aDv 340 (341)
.|.|-.. |-.|++..| ||+
T Consensus 66 ~k~g~ka-k~~~v~t~k-a~~ 84 (2365)
T COG5178 66 VKLGNKA-KTLHVLTLK-API 84 (2365)
T ss_pred hHhhhhh-hheeeeccC-CCC
Confidence 4555443 233555555 543
No 266
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=57.29 E-value=1.1e+02 Score=28.13 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN 168 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerN 168 (341)
-.|.+..+.++|+..++-+++|.+...-+..++.-+++++
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~ 109 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKT 109 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 3455677777777777777777777766666555555444
No 267
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.24 E-value=43 Score=25.94 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
++.|+-+..+.+.+..+++|+..+.+..+++++-.++|
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555544443
No 268
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.14 E-value=69 Score=37.63 Aligned_cols=7 Identities=14% Similarity=0.506 Sum_probs=3.0
Q ss_pred hhhHHHH
Q 019419 208 KFKDVQK 214 (341)
Q Consensus 208 ~~kdiqk 214 (341)
+..++++
T Consensus 480 e~~~~ek 486 (1293)
T KOG0996|consen 480 EIEKLEK 486 (1293)
T ss_pred HHHHHHH
Confidence 3444444
No 269
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.84 E-value=1.3e+02 Score=31.94 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=7.0
Q ss_pred chHHHHHHHHHhh
Q 019419 284 TPSFAQLYHSLTK 296 (341)
Q Consensus 284 aPevVEfY~sL~k 296 (341)
.-..|.+|+-+--
T Consensus 195 ~Dr~Ik~W~v~~~ 207 (459)
T KOG0288|consen 195 SDRIIKLWNVLGE 207 (459)
T ss_pred hhhhhhhhhcccc
Confidence 4455666665443
No 270
>PRK14154 heat shock protein GrpE; Provisional
Probab=56.80 E-value=1.7e+02 Score=27.84 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
+..|+++|+..++.+.+|+.++..+..+++.++.+.+.-.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~ 93 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREK 93 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777778888888888888888777665443
No 271
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.80 E-value=60 Score=38.72 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSEN 145 (341)
Q Consensus 130 ~~~~kel~EKLEesE~ 145 (341)
..++++|+++++..+.
T Consensus 320 e~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 320 NEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554433
No 272
>PRK00106 hypothetical protein; Provisional
Probab=56.71 E-value=1.3e+02 Score=32.32 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.8
Q ss_pred cchhhccchhh
Q 019419 321 IVGEIQNRSAH 331 (341)
Q Consensus 321 mIGEIeNRS~h 331 (341)
+||-+--|..|
T Consensus 337 ~lg~l~~r~sy 347 (535)
T PRK00106 337 IMGRLQFRTSY 347 (535)
T ss_pred HHHHHhhhccC
Confidence 44444444433
No 273
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.32 E-value=2.6e+02 Score=29.52 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019419 175 NKKLVEDLVAAEAKI 189 (341)
Q Consensus 175 NkELqqQLa~aEaEI 189 (341)
...|..+|+..+.++
T Consensus 358 rd~L~keLeekkrel 372 (442)
T PF06637_consen 358 RDSLAKELEEKKREL 372 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 274
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.27 E-value=1.4e+02 Score=29.91 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSE 144 (341)
Q Consensus 131 ~~~kel~EKLEesE 144 (341)
++|++|.++|+..+
T Consensus 138 q~I~~L~k~le~~~ 151 (294)
T COG1340 138 QKIKELRKELEDAK 151 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555444
No 275
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.25 E-value=27 Score=29.11 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
=.+.+++.+|+.|++||..|..+.+.++.++-..+
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888888888888874443
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.76 E-value=31 Score=33.82 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.+|+.+|.+|+-+++.++. +++|+.++.....++...+..+..+.+
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~ 104 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLES 104 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 45777777777777777777 777777776666666666666666654
No 277
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.76 E-value=62 Score=26.56 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
..|.+.++..+..++.++.++..+.+++..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~e 95 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKE 95 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 278
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.68 E-value=54 Score=37.97 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENk 176 (341)
.++|..|+.+|++.-+...+|+++|..|+.|+..++..+.++..+.+
T Consensus 183 e~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ 229 (1195)
T KOG4643|consen 183 EKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH 229 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998999999999999999999888888765443
No 279
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.62 E-value=1e+02 Score=28.41 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.-.+.++--+|++.+.=+.+|..--.-|...++.....|+.|..++..|.+++..+..++
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777666677777777888888888888887777777765554
No 280
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=55.43 E-value=97 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeEL 171 (341)
+.+.+++..+..+..+++++...+|
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l 436 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTEL 436 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333333333333
No 281
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.91 E-value=1.3e+02 Score=27.76 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLN 168 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerN 168 (341)
..++.++..+...+..|..+.
T Consensus 55 k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 55 KELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 282
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=54.83 E-value=1.1e+02 Score=28.71 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=50.8
Q ss_pred cccCcccccc-ccCCCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q 019419 107 QFARPRRQRI-VDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA------------ELEK 173 (341)
Q Consensus 107 ~~~~~r~~~~-~~~~~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNe------------ELEk 173 (341)
-||.++.+-+ +++. +-..+...+-|-+|.+.++-.+.-...|+.+|..+..+..++...+. -+|.
T Consensus 4 ~fgk~~~~~~~~~~~--~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ 81 (191)
T PTZ00446 4 WFGKKKNSSECSDNK--KKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQ 81 (191)
T ss_pred ccCCCCCCCcchhhh--hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3666664432 3332 12223346668899999998888888888888876655443222222 2234
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 019419 174 QNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~sL~~ 194 (341)
+...+.+++..++..+..+.+
T Consensus 82 ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 82 EIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655554
No 283
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.82 E-value=66 Score=30.60 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+..|+.++..+...+..|+.+..+|+.++.++.+++..++
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555554444
No 284
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.71 E-value=85 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+....|+..|+.+=.-+..-+.++. ..++..++.....|+.+|..|+.++
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l--~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLL--MEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555444444333322 2333444444455555555555544
No 285
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=54.66 E-value=43 Score=32.53 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019419 168 NAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 168 NeELEkENkELqqQLa~a 185 (341)
+++|+.||.+|++-|...
T Consensus 93 ~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 93 TQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 344667777777666543
No 286
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.61 E-value=30 Score=38.01 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhh
Q 019419 136 FEEKLMLSENLVK---DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK 210 (341)
Q Consensus 136 l~EKLEesE~Lik---eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~k 210 (341)
+.|.-.+.+.-.. +||.+-..|++|++++....++|++++-+-+.+|.+++..|.+.+- ..+ -.+|.+.+++-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~-~~~-El~~~n~pkl~ 156 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR-QLE-ELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH-HHH-HHHhhcCCcee
Confidence 4444444444333 3455555677777777777777777777777777777777766552 222 23455555543
No 287
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.59 E-value=36 Score=37.32 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFA-------LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~A-------LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+|+|+-.|.-+-..=.||+++|.. ++.||.+++..|++|+..+..|.....+-+..+.+|.
T Consensus 427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555667777543 3355666666666666665555555554444444443
No 288
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.53 E-value=92 Score=32.24 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkk 159 (341)
....+.+.++|.+..+....|+.+++.|+.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666655555555554
No 289
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=54.52 E-value=9.2 Score=44.80 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.6
Q ss_pred cCCchHHH
Q 019419 281 TQKTPSFA 288 (341)
Q Consensus 281 v~raPevV 288 (341)
.++-+++|
T Consensus 38 ~~k~~~~~ 45 (2365)
T COG5178 38 SRKQLSIV 45 (2365)
T ss_pred ccccHHHh
Confidence 34444444
No 290
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.52 E-value=45 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELq 179 (341)
+..+..|..++..|...|..|+.++..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444
No 291
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.36 E-value=80 Score=32.69 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=8.0
Q ss_pred ccCC-chhhHHHHHH
Q 019419 203 EYQS-PKFKDVQKLI 216 (341)
Q Consensus 203 e~q~-~~~kdiqkl~ 216 (341)
+||+ .+++||+..|
T Consensus 293 ~Yqs~eRaRdi~E~~ 307 (395)
T PF10267_consen 293 AYQSYERARDIWEVM 307 (395)
T ss_pred HHHHHHHHhHHHHHH
Confidence 4553 3577777644
No 292
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.30 E-value=28 Score=36.86 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
..-+..|=.++.++++++..+..+|+.|.+||..|+++......+|.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455556666666666666666666666666666665555555543
No 293
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.28 E-value=60 Score=36.01 Aligned_cols=48 Identities=29% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFV---KAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELe---kLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+..|+-|+..|+.++. .++.+...||.||-+|..+|..-+.-...+.
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34456666666665444 3566666677777777777776665554444
No 294
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=54.27 E-value=36 Score=31.99 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 132 KKKEFEEKLMLSENLVK-------------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 132 ~~kel~EKLEesE~Lik-------------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
++..|..+|-+....+. .|+.+...|+.++..+...+..|+.++.+|..++..+...+.
T Consensus 79 ~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 79 RKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred HHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 35555555555444443 566667777777777777777777777777777776666653
No 295
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.22 E-value=41 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
...+|+.++..|..++..+.....+|..
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd 82 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKD 82 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 296
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=54.10 E-value=1.3e+02 Score=27.99 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..+-...+|+..|....+-..+++..+...++++..+..+-+.+.....+.+.++......+..+..
T Consensus 75 ~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~ 141 (240)
T PF12795_consen 75 LANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPP 141 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344577788888888887788888888888888887777777777778888888888877766654
No 297
>PRK01156 chromosome segregation protein; Provisional
Probab=54.03 E-value=78 Score=34.66 Aligned_cols=9 Identities=0% Similarity=0.072 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 019419 286 SFAQLYHSL 294 (341)
Q Consensus 286 evVEfY~sL 294 (341)
.++++++.+
T Consensus 845 ~l~~~l~~~ 853 (895)
T PRK01156 845 NLKDIIEYS 853 (895)
T ss_pred HHHHHHHHH
Confidence 355554443
No 298
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.94 E-value=1.3e+02 Score=24.92 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019419 173 KQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 173 kENkELqqQLa~aEaEI~s 191 (341)
.++..|..+|..+...+..
T Consensus 81 ~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444433
No 299
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.93 E-value=2.1e+02 Score=27.38 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+++|+++|...+.-....+.+|.....-...|-+....++.+...|..+...++..+..|.
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666555555544444433334444444444444444444444444444433
No 300
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.80 E-value=63 Score=29.68 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
....+.++.+++..++.+.+++.++..|..++........+ ..+...+-.+|..++.++..|..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~-~~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE-SEEREELLEELEELKKELKELKK 124 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777776666677777777776666655321111 13666777888888888877774
No 301
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=53.76 E-value=1e+02 Score=29.68 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhcc
Q 019419 178 LVEDLVAAEAKIASLS 193 (341)
Q Consensus 178 LqqQLa~aEaEI~sL~ 193 (341)
++.++..+++++.++.
T Consensus 208 ~~~~l~~~~~~l~~~~ 223 (423)
T TIGR01843 208 AQGELGRLEAELEVLK 223 (423)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3444444444444444
No 302
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=53.42 E-value=6.9 Score=32.37 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+..+...|+.....+.+|+.++..|+.++..+.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444444444444444444444443333333
No 303
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.32 E-value=1.2e+02 Score=26.50 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkE 177 (341)
+..++..|.-....+..|+.++......++.-.+...+|+...+.
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~ 73 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKA 73 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433344444433333
No 304
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.17 E-value=1.1e+02 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
..|.++|..|+.++.++......|..+....+.+.+
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333333
No 305
>PHA03011 hypothetical protein; Provisional
Probab=53.17 E-value=1.3e+02 Score=26.41 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+-.+.|.|++.-..-++|-.|-.-+..|...+....++--.+...|+.++++++.+++.+.
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
Confidence 5566666665555556666666666677666655555556688889999999988887654
No 306
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=52.98 E-value=75 Score=35.27 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSEN 145 (341)
Q Consensus 133 ~kel~EKLEesE~ 145 (341)
+.+|+|++....+
T Consensus 526 i~~leeq~~~lt~ 538 (698)
T KOG0978|consen 526 IGKLEEQERGLTS 538 (698)
T ss_pred HHHHHHHHHHhhH
Confidence 4444444443333
No 307
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=52.85 E-value=65 Score=29.82 Aligned_cols=55 Identities=25% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.+.-++-+.|++..+-+.+|+.++..|.+.+ ..+.+++...+++...|...+..+
T Consensus 104 ~k~~~~l~~L~e~snki~kLe~~~k~L~d~I----v~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 104 QKQLKLLPTLEEISNKIRKLETEVKKLKDNI----VTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhc----cccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578888888888888888888887653 355667777777777777666555
No 308
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.81 E-value=1.8e+02 Score=32.14 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.++++-=.++.++.+.|..+...|+.+++...+.|..++.++
T Consensus 299 ~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 299 NDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556667777777777766665555555555443
No 309
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=52.58 E-value=1.6e+02 Score=25.83 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
...|.++++...+.+++.+.+.+.-+...++ +.++|.+....|++-+...++.++.++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhr---RlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHR---RLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---hHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 4445555554444444444444433333333 667777777777777888888777666
No 310
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.58 E-value=66 Score=29.01 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 167 LNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 167 rNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+-.+||+++.+|.+||+++..+++.+.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665554
No 311
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=52.53 E-value=71 Score=32.09 Aligned_cols=43 Identities=33% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++.+|+.|+..+++.-+.|++-..+|.++|..++.++.-|.+
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 3444555566666666677777777777777777766655554
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=52.22 E-value=60 Score=34.54 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.8
Q ss_pred eEEEeecCccccccc
Q 019419 94 KVFGRSLNRPVVEQF 108 (341)
Q Consensus 94 ~v~~~~~~r~~~~~~ 108 (341)
.|+.+|-.|-.+.++
T Consensus 479 tvi~vSHd~~~~~~~ 493 (638)
T PRK10636 479 ALVVVSHDRHLLRST 493 (638)
T ss_pred eEEEEeCCHHHHHHh
Confidence 344444444444443
No 313
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.20 E-value=26 Score=37.00 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
||.-.-.+++|.-|+..+..-..|...|+.+-++||.+|.-|.+||.++...+.+
T Consensus 264 QESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 264 QESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 4444455556666677777666777777777777888888888888777776643
No 314
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.09 E-value=69 Score=37.70 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQS-EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQs-EL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
..++|+|.++..+....+|+. +.+-++.+.....++..+.+.++++|..++..++.+
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~ee 523 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEE 523 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566555544444444442 322233333333333333333333333333333333
No 315
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.08 E-value=42 Score=31.63 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 163 KAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 163 kLqerNeELEkENkELqqQLa 183 (341)
.+.++|++|++|+.+|+.++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 73 DLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 316
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.03 E-value=49 Score=32.44 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.+.+...|+.++.+|+.|...++.+++.|+.++....+-+......+
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888888877777776666654
No 317
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.98 E-value=65 Score=26.82 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 146 LVKDLQSEVFALKAEFVK---AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 146 LikeLQsEL~ALkkELek---LqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
-+...+.+|++.+..+.. .-+.-..||+|...+..++...+.++..|.-
T Consensus 13 kl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 13 KLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 334445555555544443 2234467778888888888888888877773
No 318
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=51.93 E-value=1.2e+02 Score=27.37 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
+|+..|.|-++..+...|+.++++|+-|--.+.+-
T Consensus 22 KKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeei 56 (134)
T PF15233_consen 22 KKKSSEELGEAQALWEALQRELDSLNGEKVHLEEI 56 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77788999999999999999999998665544433
No 319
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.71 E-value=1e+02 Score=30.30 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccccc------
Q 019419 131 KKKKEFEEKLMLSENLVKDL----QSEVFALKAEFVKAQSLN----AELEKQNKKLVEDLVAAEAKIASLSSRE------ 196 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeL----QsEL~ALkkELekLqerN----eELEkENkELqqQLa~aEaEI~sL~~~~------ 196 (341)
.+-.++-.+++.-...+.-| ..++.+++.||..|.+.. ..|+.+..+|..++..+..++.-|...-
T Consensus 38 ~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPv 117 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPV 117 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34567777788777776654 567778888888776443 3444555555555555555554443211
Q ss_pred --hhccccccCCchhhHHHH
Q 019419 197 --QREAVGEYQSPKFKDVQK 214 (341)
Q Consensus 197 --~~~~~~e~q~~~~kdiqk 214 (341)
-.+....+|...++|-|+
T Consensus 118 K~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 118 KAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 133444445555555555
No 320
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.68 E-value=53 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkEL 161 (341)
.-..+.+.++++..+..+..|+.++..+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQ 45 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444444444444443333
No 321
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=51.68 E-value=80 Score=29.31 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|..++..++..|+.|+.+++.|.++....+.....|-
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888888888888888887777655444
No 322
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=51.66 E-value=81 Score=32.73 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=34.3
Q ss_pred ecCccccccccCccccccccCCCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 99 SLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 99 ~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
..||-|-...++-| .| -- .++.++++|++++++.+..+.+++..+..++
T Consensus 256 ~Anr~VAi~cnntr---aV-------~k-~~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~ 304 (391)
T smart00435 256 RANREVAILCNHQR---TV-------SK-THEKSMEKLQEKIKALKYQLKRLKKMILLFE 304 (391)
T ss_pred HHHHHHHHHhCCCC---CC-------CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555555544 33 22 4578899999999999998888888887554
No 323
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.58 E-value=95 Score=27.87 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019419 182 LVAAEAK 188 (341)
Q Consensus 182 La~aEaE 188 (341)
++.++.|
T Consensus 177 ~~~LkkQ 183 (192)
T PF05529_consen 177 IEALKKQ 183 (192)
T ss_pred HHHHHHH
Confidence 3333333
No 324
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.57 E-value=52 Score=32.51 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 019419 171 LEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 171 LEkENkELqqQLa~aEaEI~sL~ 193 (341)
||.|...++.+..-+|+++..++
T Consensus 170 LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 170 LEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhh
Confidence 33344444444444444444333
No 325
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.53 E-value=1.2e+02 Score=35.34 Aligned_cols=42 Identities=7% Similarity=-0.006 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
.++++++.+|...+..+.+++.++..+..++..+....+.++
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~ 1011 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK 1011 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555544444444444433
No 326
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.45 E-value=75 Score=36.60 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=6.8
Q ss_pred eEEEeecCcccc
Q 019419 94 KVFGRSLNRPVV 105 (341)
Q Consensus 94 ~v~~~~~~r~~~ 105 (341)
-++|++.+--.+
T Consensus 582 slyGl~LdL~~I 593 (1201)
T PF12128_consen 582 SLYGLSLDLSAI 593 (1201)
T ss_pred ccceeEeehhhc
Confidence 566666654443
No 327
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.40 E-value=71 Score=32.23 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 168 NAELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 168 NeELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
.+.|--||+||+.+|.+++.+...+..+
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444569999999999999998777753
No 328
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.40 E-value=54 Score=31.20 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|++.+..+..++..+.+..+.|+.....|..++..++.+...|.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443333
No 329
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=51.33 E-value=1.3e+02 Score=24.19 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVK-AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELek-LqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.++.++......=+|+.+|--|...+.+ .-+...++.++|-+|+-++..+..++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el 59 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKREL 59 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333445555555555543 22333444455555555555555554
No 330
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.33 E-value=1.1e+02 Score=32.86 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENL--------------VKDLQSEVFALKAEFVKAQS--------LNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 131 ~~~kel~EKLEesE~L--------------ikeLQsEL~ALkkELekLqe--------rNeELEkENkELqqQLa~aEaE 188 (341)
..+.+|..+|...+.. +..++.++..|+.++.+... ..+.++.....|+.+++.++.+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~ 367 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA 367 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776665543 23455566555544433111 1222223334556666666666
Q ss_pred HhhccccchhccccccCCchhhHHHHHHHHhhhhhh
Q 019419 189 IASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSI 224 (341)
Q Consensus 189 I~sL~~~~~~~~~~e~q~~~~kdiqkl~a~KLe~s~ 224 (341)
+..+.....+....+++..-.+++-..+-.++|...
T Consensus 368 ~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 368 SAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444433333333333333444444555443
No 331
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=51.32 E-value=88 Score=35.35 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEK-------QNKKLVEDLVAAEAKI 189 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEk-------ENkELqqQLa~aEaEI 189 (341)
++|...||++|....+.++.++..|++|-+ ||+.|...+.-++.++
T Consensus 433 qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l 485 (861)
T PF15254_consen 433 QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL 485 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777877777777777777777754 5555555554444444
No 332
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=51.30 E-value=1.3e+02 Score=29.13 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=32.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 124 ~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.++-+++++.+..++=-++-....+... ....+...+...|++||..|+.++.+++.++..|.
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k------~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRK------QKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666665544333332222111 11134444666677777777777776666664444
No 333
>PRK12705 hypothetical protein; Provisional
Probab=51.20 E-value=1.3e+02 Score=32.03 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=5.7
Q ss_pred cchhhccchhh
Q 019419 321 IVGEIQNRSAH 331 (341)
Q Consensus 321 mIGEIeNRS~h 331 (341)
++|-+.-|+.|
T Consensus 310 ~Lg~L~~R~sy 320 (508)
T PRK12705 310 LLGRLYFRTSY 320 (508)
T ss_pred HHHHHhhcccC
Confidence 35555555544
No 334
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.20 E-value=72 Score=36.52 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.+++.|..-++.+..||+.+..+..|+..+++....++.+.++-.-+|
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel 143 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI 143 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555444444444333333
No 335
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=50.86 E-value=36 Score=27.49 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREA 200 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~ 200 (341)
...+++.++..+.++..|++.=..|..=+. ..++--.-.++.+.+|..++.+|..|-..+....
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~Leesl~----lyeeG~~L~k~C~~~L~~ae~kv~~l~~~~~~~~ 68 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSLEESLD----LYQRGMKLSAACDTTLKNAEKKVNDLIKEEAEDV 68 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 346789999999999999887666644333 3344444556777888888888877665444433
No 336
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.83 E-value=1.3e+02 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKA 164 (341)
Q Consensus 149 eLQsEL~ALkkELekL 164 (341)
+|+.+|.+.+.||..+
T Consensus 65 ~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 65 ALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 337
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.23 E-value=1.2e+02 Score=23.54 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALK-----AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALk-----kELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.....++|+..+..+.++...+.... ..+..+..-..-|+.....++.++..++.++
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 75 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEV 75 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444 4444444444445555555555555555554
No 338
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=49.71 E-value=1.5e+02 Score=26.27 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=30.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 125 EDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV-----KAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 125 ~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELe-----kLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
-+..+.+-.+++++.+...+..+..|+-+...+-.|.. ....--..++.|..++..+...+..++.++
T Consensus 14 Te~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 14 TEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333555555555555555555555555544443 122222333444444444444444444333
No 339
>PRK14162 heat shock protein GrpE; Provisional
Probab=49.67 E-value=1.3e+02 Score=28.17 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (341)
Q Consensus 124 ~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNe 169 (341)
-+|.+....+.+++++|+..+..+.+|+.++..+..+++.++.+..
T Consensus 32 ~~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 32 EEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788999999999998889999999999999988877664
No 340
>PRK12704 phosphodiesterase; Provisional
Probab=49.62 E-value=1.3e+02 Score=31.78 Aligned_cols=7 Identities=0% Similarity=0.249 Sum_probs=2.9
Q ss_pred CchHHHH
Q 019419 283 KTPSFAQ 289 (341)
Q Consensus 283 raPevVE 289 (341)
|..+||+
T Consensus 283 ~iee~~~ 289 (520)
T PRK12704 283 RIEEMVE 289 (520)
T ss_pred CHHHHHH
Confidence 3444443
No 341
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.58 E-value=24 Score=36.23 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
|+..|++.|..|.+||.+|+.+|+++|++
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444
No 342
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.57 E-value=98 Score=26.48 Aligned_cols=22 Identities=55% Similarity=0.599 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 168 NAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 168 NeELEkENkELqqQLa~aEaEI 189 (341)
...|+++..+|+.++...+.++
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433333
No 343
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=49.50 E-value=1.1e+02 Score=33.21 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 019419 208 KFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 208 ~~kdiqkl~a~KLe~s~~ 225 (341)
.+..+|+-.|++|+....
T Consensus 364 ~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 364 ALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888999999877
No 344
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.48 E-value=1.2e+02 Score=28.50 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (341)
Q Consensus 126 ~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeE 170 (341)
+......+..++++|+..+..+.+|+.++..+..+++.++.+.+.
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466788999999999988899999999999999888777643
No 345
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.45 E-value=68 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~ 196 (341)
++.++..+..++..+..++..|+.+...++.++..++.++..|.+-.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444445555555556666666666666666666666666555443
No 346
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.43 E-value=77 Score=26.35 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
+-+..|.++++..+..++.|+.++..|.+++..++..
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666555555555555555555444433
No 347
>PLN02320 seryl-tRNA synthetase
Probab=49.35 E-value=86 Score=33.40 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhh
Q 019419 286 SFAQLYHSLTKQ 297 (341)
Q Consensus 286 evVEfY~sL~kr 297 (341)
+|+.|...+..+
T Consensus 238 ALi~f~ld~~~~ 249 (502)
T PLN02320 238 ALVNWTLSEVMK 249 (502)
T ss_pred HHHHHHHHHHHH
Confidence 566666555543
No 348
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=49.35 E-value=71 Score=32.35 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLS-ENLVKDL---QSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 130 ~~~~kel~EKLEes-E~LikeL---QsEL~ALkkELekLqerNeEL 171 (341)
+.+|.+..++|.+. |....+. +.+|..|..++..+.+..++|
T Consensus 96 ~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~L 141 (319)
T KOG0796|consen 96 DRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEEL 141 (319)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667776666 2222222 455777777777777777666
No 349
>PRK10698 phage shock protein PspA; Provisional
Probab=49.31 E-value=1.8e+02 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNA 169 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNe 169 (341)
.+.++.++..+..+...|..+..
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~ 76 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAE 76 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555543
No 350
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=48.82 E-value=2.5e+02 Score=27.91 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q 019419 177 KLVEDLVAAEAKIASLS 193 (341)
Q Consensus 177 ELqqQLa~aEaEI~sL~ 193 (341)
.|++++..++.++..|.
T Consensus 258 ~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 258 NLKTDIARAESKLAELS 274 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 351
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=48.78 E-value=89 Score=31.40 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.+.-=|.+-|...|..+..+.+|...|+.++.-|+.++.++..+....+..++-+.
T Consensus 57 rklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 57 RKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455666666666666666666666555555555555555444444444443
No 352
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.43 E-value=1.6e+02 Score=33.60 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=7.0
Q ss_pred HHHHhhhh
Q 019419 215 LIANKLEH 222 (341)
Q Consensus 215 l~a~KLe~ 222 (341)
|+|+|+++
T Consensus 733 ~~~~k~~s 740 (1104)
T COG4913 733 MLSRKVHS 740 (1104)
T ss_pred HHHHHHhh
Confidence 89999886
No 353
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.36 E-value=1.3e+02 Score=26.54 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.1
Q ss_pred HHHHHH
Q 019419 154 VFALKA 159 (341)
Q Consensus 154 L~ALkk 159 (341)
++-|..
T Consensus 79 ~E~Le~ 84 (119)
T COG1382 79 KETLEL 84 (119)
T ss_pred HHHHHH
Confidence 333333
No 354
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.35 E-value=76 Score=30.20 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDL 182 (341)
Q Consensus 169 eELEkENkELqqQL 182 (341)
..|+.|+..|+..+
T Consensus 90 ~~le~El~~Lr~~l 103 (202)
T PF06818_consen 90 GQLEAELAELREEL 103 (202)
T ss_pred hhhHHHHHHHHHHH
Confidence 33333333333333
No 355
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=48.34 E-value=1.2e+02 Score=25.00 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
.++|..+|...+.|+.+|......|+..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~K 34 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGK 34 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777778888888877777777753
No 356
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=48.25 E-value=34 Score=36.34 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=45.8
Q ss_pred eecCccccccccCccccccccCCCCcccCCchhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 98 RSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSE------NLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 98 ~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~kel~EKLEesE------~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
....||.+.-|+--|+-|-|- + +.+.-.++|-++|+... +--+.|+.+|.+|+++|+........-
T Consensus 321 ~~~~~~k~npfG~ArPRe~vl------~--e~G~D~~~~d~~le~~~~~r~e~~~ek~lKeeI~~lk~~l~~~~~~~~~~ 392 (492)
T PF06273_consen 321 VVKPRPKVNPFGAARPREVVL------Q--EKGQDWRKIDLELEHRAVDRPETEEEKFLKEEINALKERLEEEEASSEKS 392 (492)
T ss_pred ccCCCCCCCCccccChHHHHH------H--HhCcCHHHHHHHhhcccccccccccchhhhhhHHHHHHHHHhhhhhhhhc
Confidence 345677788888877665432 2 23455777888887643 112355666666666655543311100
Q ss_pred -H-HHHHHHHHHHHHHHHHHhhc
Q 019419 172 -E-KQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 172 -E-kENkELqqQLa~aEaEI~sL 192 (341)
+ .+...|..+|.++|.++..|
T Consensus 393 ~~~~~~~~~~e~i~~kE~eLe~L 415 (492)
T PF06273_consen 393 KGSGEEESLREEISQKEKELEKL 415 (492)
T ss_pred cccccchhHHHHHHHHHHHHHHH
Confidence 0 01244555555555555333
No 357
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.25 E-value=1.1e+02 Score=31.11 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019419 170 ELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI~ 190 (341)
++-.+..++..+|.+.+.++.
T Consensus 298 ~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555553
No 358
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.01 E-value=83 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
.+.+++.+++.+..++..+..+.+.|++...+++.+|..+-.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556555566665555443
No 359
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=47.99 E-value=6 Score=33.36 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=4.4
Q ss_pred HHHHHHHh
Q 019419 288 AQLYHSLT 295 (341)
Q Consensus 288 VEfY~sL~ 295 (341)
..|||||.
T Consensus 64 lkLYrsLG 71 (118)
T PF08286_consen 64 LKLYRSLG 71 (118)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 45566654
No 360
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=47.90 E-value=1.1e+02 Score=30.86 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIA 217 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a 217 (341)
...-+|.+++.++..-+.....|+.+..+|+.+...++.+|...++-+- +| +++.+-.-+|+|+-
T Consensus 135 ~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda---~g-k~~tR~~~q~k~~k 199 (308)
T PF06717_consen 135 DFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKDA---NG-KQLTRYEVQRKLLK 199 (308)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CC-CcccHHHHHHHHHH
Confidence 3455666677777777777788888888888888888889988886332 23 37777555555643
No 361
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.84 E-value=1.4e+02 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
.+.+.|.+.+++..+..++|..++.++..+-..
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRde 45 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDE 45 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555554444445555444444433333
No 362
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.79 E-value=1.8e+02 Score=27.46 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkEL 161 (341)
.+.++.+...++..+.-++.+..|+...++.+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777766666666666655554444
No 363
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.62 E-value=1e+02 Score=35.87 Aligned_cols=40 Identities=33% Similarity=0.266 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
+.++++++.|+..++.+...++.+...|..++..+++.+.
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444443
No 364
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.60 E-value=2.6e+02 Score=27.19 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccccchhccccccCCchhhHHHH-HHHHhhhhhh
Q 019419 151 QSEVFAL-KAEFVKAQSLNAELEKQNKKLVEDLV----AAEAKIASLSSREQREAVGEYQSPKFKDVQK-LIANKLEHSI 224 (341)
Q Consensus 151 QsEL~AL-kkELekLqerNeELEkENkELqqQLa----~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqk-l~a~KLe~s~ 224 (341)
++++..+ +.|...++..|+.|..+..+++++|. ...++. +=.=|=+--..++.+-++|.+. -+..||++-+
T Consensus 107 Rsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~---rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev 183 (220)
T KOG3156|consen 107 RSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEF---RLDLNLEKGRIKDESSSHDLQIKEISTKIDQEV 183 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc---eeecchhhccccchhhhcchhHhHHHHHHHHHH
Confidence 4444432 24555555555555554444444432 222111 1111222334566777777776 6667777655
Q ss_pred h
Q 019419 225 V 225 (341)
Q Consensus 225 ~ 225 (341)
+
T Consensus 184 ~ 184 (220)
T KOG3156|consen 184 T 184 (220)
T ss_pred H
Confidence 4
No 365
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=47.48 E-value=1.5e+02 Score=27.44 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
++.+|+..+.....++.++..++.++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r 89 (322)
T TIGR01730 62 YQLALQAALAQLAAAEAQLELAQRSFER 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 366
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.36 E-value=67 Score=28.96 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI 189 (341)
|..+.+.|..||..++.+++.++.++
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555
No 367
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.28 E-value=94 Score=26.47 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
-++-++.|..+++..+..+..++.++..+.+++..+.....+|..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577777777777777777777777777777666666655544
No 368
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.27 E-value=56 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqq 180 (341)
+.+|+..++.+....|++.+.|++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 345555555555555555555554
No 369
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.18 E-value=1.2e+02 Score=28.19 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
-.++|+.||..|.++++. .+.++...+.|+++...++.++..|.
T Consensus 121 ~~~eL~~eI~~L~~~i~~----le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQR----LEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666554 34445555555555555555554443
No 370
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.15 E-value=1.3e+02 Score=28.02 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI 189 (341)
.+|+.|+++|..+++.++.-.
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~ 143 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQ 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555433
No 371
>PRK14143 heat shock protein GrpE; Provisional
Probab=47.11 E-value=2.7e+02 Score=26.86 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeE 170 (341)
..+.+..|+++|+..+..+.+|+.++..+..+++.++.+...
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999988877743
No 372
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.07 E-value=1.4e+02 Score=27.97 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHH---HHHHHHHHHHhhccc
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEF-------VKAQSLNAELEKQ----NKKLV---EDLVAAEAKIASLSS 194 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkEL-------ekLqerNeELEkE----NkELq---qQLa~aEaEI~sL~~ 194 (341)
..++.+++.-+|.-++.=|.-|+.+|...++=+ ....++...|+.+ ..+++ .+|+.+|.+|..|..
T Consensus 55 ~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~ 134 (178)
T PF14073_consen 55 LSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTA 134 (178)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345578888899999988888888887665322 2344444555544 34455 445666777777764
No 373
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=46.89 E-value=72 Score=34.48 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.+.++++=|+.+|..+=++++.|++.|+.++..+++++.+|.+...+
T Consensus 360 v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 360 VSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667788899999999999999999999999999999999888876
No 374
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.86 E-value=76 Score=36.14 Aligned_cols=7 Identities=29% Similarity=0.221 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019419 155 FALKAEF 161 (341)
Q Consensus 155 ~ALkkEL 161 (341)
.+|..+|
T Consensus 489 ~qlqari 495 (1118)
T KOG1029|consen 489 DQLQARI 495 (1118)
T ss_pred HHHHHHH
Confidence 3333333
No 375
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.84 E-value=67 Score=33.87 Aligned_cols=9 Identities=11% Similarity=0.051 Sum_probs=3.4
Q ss_pred hhhccchhh
Q 019419 323 GEIQNRSAH 331 (341)
Q Consensus 323 GEIeNRS~h 331 (341)
-+++.|=.+
T Consensus 479 ~e~~~~~~~ 487 (569)
T PRK04778 479 EEATEDVET 487 (569)
T ss_pred HHHHHHHHH
Confidence 333333333
No 376
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=46.77 E-value=4.1e+02 Score=29.93 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccccch-hccccccC--
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV-AAEAKIASLSSREQ-REAVGEYQ-- 205 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa-~aEaEI~sL~~~~~-~~~~~e~q-- 205 (341)
.++...|+.+|...++.+.+++.++....+.+....+....|..|....+..+. .+..+++.+.++=- ..+.+|++
T Consensus 520 se~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLN 599 (739)
T PF07111_consen 520 SEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLN 599 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------------------------CchhhHHHHHHHHh-----------hhhhhh----hhhhhccCCCCCCCCCCCC
Q 019419 206 --------------------------SPKFKDVQKLIANK-----------LEHSIV----MTDAISETSINTPPSEPKI 244 (341)
Q Consensus 206 --------------------------~~~~kdiqkl~a~K-----------Le~s~~----~~~a~~~~s~~~~~~ppp~ 244 (341)
+.++..+|.-.|++ ||+-+- .--+......-+..+|.|+
T Consensus 600 eARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l~rl~~~lps~~~k~~~~~~~ 679 (739)
T PF07111_consen 600 EARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLMLQRLLAVLPSLLEKESSPRPP 679 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCcccccccCCCC
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCCCCCcccc
Q 019419 245 PIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARA 278 (341)
Q Consensus 245 p~P~~~~~~rK~~~~~~~ppPpPPp~P~~~~~~~ 278 (341)
+ ...+.|+|++.|++...+.
T Consensus 680 ~--------------~s~~~~~~~~~~~r~~~~g 699 (739)
T PF07111_consen 680 E--------------SSKPASLPAAFPTRESTKG 699 (739)
T ss_pred c--------------cccCCCCCCCCCCccccCC
No 377
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.72 E-value=97 Score=36.04 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 019419 173 KQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 173 kENkELqqQLa~aEaEI~sL~ 193 (341)
.+...+++++...+.+|..|.
T Consensus 829 ~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 829 KEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444
No 378
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.51 E-value=1.8e+02 Score=30.35 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHHhhhhhh
Q 019419 149 DLQSEVFALKAEFVK-AQSLNAELEK---QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSI 224 (341)
Q Consensus 149 eLQsEL~ALkkELek-LqerNeELEk---ENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~KLe~s~ 224 (341)
+++-.+.+++.++.+ |..+-+-|-. .-.-++..+++.++++.+|-..+ +..-|=|.|.+||.|-+.-.
T Consensus 329 ~~e~~l~A~~~kl~~ew~~~~eal~~rQl~~qlv~er~~ti~~el~~l~eq~--------~q~wff~nr~li~~kr~~~~ 400 (418)
T KOG4570|consen 329 QYEERLKALHSKLQAEWKIESEALLSRQLTTQLVKERLSTIEAELIALYEQN--------LQQWFFDNRQLIQRKRQQRE 400 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHhHHHHhhh
Confidence 456667777777664 5544443322 33345555666777776666432 23557777889998866554
Q ss_pred h
Q 019419 225 V 225 (341)
Q Consensus 225 ~ 225 (341)
.
T Consensus 401 ~ 401 (418)
T KOG4570|consen 401 Q 401 (418)
T ss_pred h
Confidence 4
No 379
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=46.45 E-value=1e+02 Score=26.62 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN 168 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerN 168 (341)
..++.+++++|+..++-+.+|+.++..+..+++.++.+.
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666666666666665555444
No 380
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.44 E-value=1.6e+02 Score=36.17 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ---------------NKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE---------------NkELqqQLa~aEaEI~sL~~ 194 (341)
...+-.|+..|.+.+.-+.....++.-|+.|...|+.++++|... +..|..+|..++..|..|..
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchhccccccCCchhhHHHHHHHHhhhhhh
Q 019419 195 REQREAVGEYQSPKFKDVQKLIANKLEHSI 224 (341)
Q Consensus 195 ~~~~~~~~e~q~~~~kdiqkl~a~KLe~s~ 224 (341)
+|.+.|.-+-++|...+
T Consensus 1336 -------------~~~~~q~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1336 -------------ELNRLQEKIKKQLDELN 1352 (1822)
T ss_pred -------------HHHHHHHHHHHHHHHHH
No 381
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.19 E-value=2e+02 Score=25.75 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019419 164 AQSLNAELEK 173 (341)
Q Consensus 164 LqerNeELEk 173 (341)
++..++.|+.
T Consensus 78 lr~~~e~L~~ 87 (177)
T PF07798_consen 78 LRSENEKLQR 87 (177)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 382
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=46.15 E-value=1e+02 Score=33.27 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++..-+..++.|+.-++.+...|+.+.+.|+.+..++..+|..+.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445555556666666666666666666666666655555554444
No 383
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.03 E-value=1.4e+02 Score=24.39 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEk---ENkELqqQLa~aEaEI~sL~~ 194 (341)
+..+.++..++..++.+.+.|+. ...+|..+|+...+++..|..
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666665 334577777777777766663
No 384
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.98 E-value=1.9e+02 Score=24.70 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
-+..+...|+..+-.+..++.-+.+-..|.+.+...+.+++.+...++.++..++.++...+
T Consensus 47 ~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 47 LYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777788888888888888877777777777777664433
No 385
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.90 E-value=92 Score=31.89 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA---EFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkk---ELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++.++++.+++.....++.+..++..+.+ +.+.++++..+|.++.++|..++..++.++
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555555555543211 223344455555555555555555555544
No 386
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=45.63 E-value=1.1e+02 Score=35.88 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 019419 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (341)
Q Consensus 162 ekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~ 196 (341)
+.++.....++.+...|..++..++.++..|..++
T Consensus 293 ~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~ 327 (1353)
T TIGR02680 293 ETAREEERELDARTEALEREADALRTRLEALQGSP 327 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 33333333444444455555555555555555443
No 387
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.62 E-value=1.1e+02 Score=34.95 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 148 keLQsEL~ALkkELekLq 165 (341)
.+.+.+..+|...+++++
T Consensus 462 ~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 388
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=45.35 E-value=1.6e+02 Score=29.28 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 019419 173 KQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 173 kENkELqqQLa~aEaEI~sL~ 193 (341)
.+++.|..++..++..+..++
T Consensus 216 ~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 216 NESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 389
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.31 E-value=1.2e+02 Score=29.37 Aligned_cols=55 Identities=24% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
|-++.+..+..+.....|..|+.++......|+.|...|+..=.++.++|.=|++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666666666666666666666666666666666644443
No 390
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.29 E-value=1.4e+02 Score=33.04 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=5.8
Q ss_pred cccccchhhccchh
Q 019419 317 AHSSIVGEIQNRSA 330 (341)
Q Consensus 317 ~~~~mIGEIeNRS~ 330 (341)
+-+.+|.+.=.+..
T Consensus 746 ~Lr~~v~~~L~~~~ 759 (782)
T PRK00409 746 KLRKGVQEFLKKHP 759 (782)
T ss_pred HHHHHHHHHHcCCC
Confidence 34444444433333
No 391
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=45.21 E-value=1.6e+02 Score=27.90 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019419 181 DLVAAEAKI 189 (341)
Q Consensus 181 QLa~aEaEI 189 (341)
++..++.++
T Consensus 154 ~~~~a~~~l 162 (334)
T TIGR00998 154 ALLSAKAAL 162 (334)
T ss_pred HHHHHHHHH
Confidence 333333333
No 392
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=45.17 E-value=1.7e+02 Score=23.99 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.++-..++.+..|..++..-..+.-.++...+.|..|++.|..++.....-|.+|..
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444555555555555555555556666677777777777777776666666664
No 393
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.03 E-value=2.8e+02 Score=26.87 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFAL-KAEFVKAQSLN-----------AELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~AL-kkELekLqerN-----------eELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
...+.|.+|.|-++..+.-...|+.+|.+- ...-......| ..+|.+...+.+-+.+.+.|..+|.+-
T Consensus 18 t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA 97 (221)
T KOG1656|consen 18 TPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENA 97 (221)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 345668888888877777666777777654 22122222223 334556666666677777776666643
No 394
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.89 E-value=1.1e+02 Score=34.27 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+.+|+...+.-.+++.-|.-|+..+......++.|+.++..|+.+|..++.
T Consensus 307 qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 307 QTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344443333333444444444444444444444444444444333333333
No 395
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=44.86 E-value=33 Score=37.21 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+..+.+.|+.||..|+.+=.+++.+|..|-+
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4444455555555555555555555555543
No 396
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.86 E-value=1.6e+02 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 158 kkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.++.-.++.....|.+|+++++..|..++..
T Consensus 42 ~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 42 LKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343444444455555555555555544443
No 397
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=44.75 E-value=2.2e+02 Score=25.17 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.++...++..+.++...|..+|+++.++.+
T Consensus 19 cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpg 49 (148)
T PF10152_consen 19 CEEKLSDMEQRLQRLEATLNILEAKLSSIPG 49 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556677777777888888888888877764
No 398
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.68 E-value=2.2e+02 Score=27.23 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
..++.+..++.++..+..-+.+++.....|+..+.+++.+...+.+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 399
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=44.59 E-value=85 Score=23.99 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 161 FVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 161 LekLqerNeELEkENkELqqQLa~aE 186 (341)
-.....+..+|+.||..|+.+|....
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888888888887543
No 400
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.51 E-value=1.6e+02 Score=23.53 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
.++...+|+..+.....+|..|..++..|..+|..+-.++.
T Consensus 26 Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 26 WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555444443
No 401
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=44.49 E-value=1.4e+02 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 167 LNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 167 rNeELEkENkELqqQLa~aEa 187 (341)
....++.+.+.+..+|...+.
T Consensus 28 ~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 28 RDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 402
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.12 E-value=1e+02 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHhhhhcccCCCCCCCC------CCC---cccccccccchhhccchhhhhh
Q 019419 289 QLYHSLTKQVEKKDLPSPVNQ------KRP---AVSIAHSSIVGEIQNRSAHLLA 334 (341)
Q Consensus 289 EfY~sL~kr~~k~d~~~~~~~------~~~---~~~~~~~~mIGEIeNRS~hLlA 334 (341)
.-|+-|+-.+.-+....+..+ ..+ ..+.-.+.+|||.+-||+|-=.
T Consensus 380 ~~YRkLLegee~r~~~~~s~~~~~~s~~s~~~~~~~~~~r~~~ge~~~~ss~~r~ 434 (546)
T KOG0977|consen 380 AAYRKLLEGEEERTGSLSSLVVQNVSTSSPRAVRDTRSSRTVIGESESRSSYSRS 434 (546)
T ss_pred HHHHHHhccccCCCCccceeEEeecccCCCcccccCCCcccccCccccccccccc
Confidence 458888877766532111000 011 1112334588999888876543
No 403
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.87 E-value=1.3e+02 Score=34.42 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 146 LikeLQsEL~ALkkELek 163 (341)
+++.++.+++.|.+|.+.
T Consensus 543 irq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 543 IRQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 404
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=43.85 E-value=1.2e+02 Score=33.72 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
++.+.+...+.++.++.....|.+.+...+.+|.+++..+..+...++.+|..++.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444443333333
No 405
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.78 E-value=1.8e+02 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEk 173 (341)
++...+..+...+..+..++++|+.
T Consensus 39 ~~~~~~~~l~~~~~~l~~k~~~l~~ 63 (99)
T PF10046_consen 39 KMKDIAAGLEKNLEDLNQKYEELQP 63 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555543
No 406
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=43.62 E-value=61 Score=30.83 Aligned_cols=37 Identities=32% Similarity=0.406 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
-+-|.+-|++.+. |..+|.+++.|+..+++.|.+|..
T Consensus 117 R~AL~eaL~ENe~----Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 117 RKALEEALEENEK----LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 444566777777777777766654
No 407
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=43.56 E-value=1.5e+02 Score=33.31 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
-++-+++..+...++...|......+-..++++.+.+.+|++++++|+.++...+
T Consensus 699 A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~~ 753 (851)
T TIGR00344 699 AIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQK 753 (851)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666555556666677778888888888888888876544
No 408
>PRK14155 heat shock protein GrpE; Provisional
Probab=43.49 E-value=2.9e+02 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNe 169 (341)
..++.++|+..+..+.+|+.++..+..|++.++.+.+
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777888888888888887776663
No 409
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=43.15 E-value=58 Score=31.83 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++.+|+.++..++...+.+++|..++++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443334444444444444444333
No 410
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.12 E-value=1.2e+02 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+|+..|+.|.-|...+...+.+|.+.++-|+-.|.+-.++...+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35555555555555555555555555555555555555555544443
No 411
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=42.99 E-value=79 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
+.+..+..++..|..|+..|+.+|+....+
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666655544
No 412
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.84 E-value=96 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ 155 (341)
+-++.|+++++..++.+.+|+.++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555544443
No 413
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=1e+02 Score=31.84 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVA 184 (341)
Q Consensus 169 eELEkENkELqqQLa~ 184 (341)
+.||.+...|+.+.+-
T Consensus 256 etLEqq~~~L~~niDI 271 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDI 271 (365)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 3444444444444433
No 414
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.70 E-value=1.1e+02 Score=32.39 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
+....+...++++..++.++..+..+|..+.+..+.-..+...|..++..++.+
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ 151 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKE 151 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444433333333444444444444433
No 415
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.51 E-value=1.8e+02 Score=31.37 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.++.+.-..+....++......|...+..+.+..+++.+.+..+|..+...|..|+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666666666655555555555555555555554444443
No 416
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.51 E-value=1.7e+02 Score=29.53 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNA---ELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNe---ELEkENkELqqQLa~aEaEI~sL 192 (341)
....|+.++..+.+++.++.+..+ ..+.+.++++.|++.++.++..+
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444322 23345556666666666555433
No 417
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.49 E-value=79 Score=33.63 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~ 184 (341)
|-.+.+.|+.|.++|+.+|++
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 444667777777777777653
No 418
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.49 E-value=2.5e+02 Score=26.04 Aligned_cols=6 Identities=17% Similarity=0.612 Sum_probs=2.7
Q ss_pred chhhHH
Q 019419 207 PKFKDV 212 (341)
Q Consensus 207 ~~~kdi 212 (341)
..|.+|
T Consensus 166 ~~fer~ 171 (219)
T TIGR02977 166 ARFEQY 171 (219)
T ss_pred HHHHHH
Confidence 344444
No 419
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.43 E-value=87 Score=31.32 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+..++.+++.++.+|..+...++.++..++.++..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444444444333
No 420
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=42.42 E-value=1.6e+02 Score=29.61 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=27.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVF-ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 152 sEL~-ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.|++ .|..+|.++..+|.+|+.+|..|.-++.+.+.+
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454 466788888899999999998888777655543
No 421
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=42.27 E-value=2e+02 Score=27.03 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=5.7
Q ss_pred HHHHHHHHhhh
Q 019419 287 FAQLYHSLTKQ 297 (341)
Q Consensus 287 vVEfY~sL~kr 297 (341)
+++|++++.+.
T Consensus 154 l~e~~~~i~~E 164 (206)
T PF14988_consen 154 LDEFTRSIKRE 164 (206)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 422
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=42.25 E-value=69 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa 183 (341)
.--.|..|..|++.|+.-..
T Consensus 49 ~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 49 FAMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544443
No 423
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=42.06 E-value=2.2e+02 Score=28.91 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALK-AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALk-kELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|.-+|.....-+-+|++.+.+-+ -.+.+|+.+...|+.+...++..|.++..+-..|.
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 344444444444445555555433 33455556666666555555555655555544444
No 424
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.05 E-value=2.1e+02 Score=34.02 Aligned_cols=63 Identities=29% Similarity=0.328 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 133 KKEFEEKLMLSE---NLVKDLQSEVFALKAEFVKAQS-LNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 133 ~kel~EKLEesE---~LikeLQsEL~ALkkELekLqe-rNeELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
++++.++.+... .+.++|+..+..+..+...++. +-..++.+.++...++...+++...|...
T Consensus 450 ~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~ 516 (1317)
T KOG0612|consen 450 KEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL 516 (1317)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 566666665444 5667888777777766666663 44555666667777777666666666643
No 425
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=42.03 E-value=80 Score=34.81 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
.+++++++|+++++..+..+.+++.++....
T Consensus 633 ~h~~smekl~~kI~~~keql~e~~~~l~~ak 663 (759)
T KOG0981|consen 633 THEKSMEKLAEKIKAKKEQLKEAEAELKSAK 663 (759)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688899999999999998888888877553
No 426
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=42.01 E-value=73 Score=30.02 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 167 LNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 167 rNeELEkENkELqqQLa~aEaEI~ 190 (341)
...+|.+||++|+.+++.++.++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544444443
No 427
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=41.84 E-value=2.3e+02 Score=29.45 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK--------------AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELek--------------LqerNeELEkENkELqqQLa~aEaEI 189 (341)
.++|.|-+++-+....+|+.+-..|.++|.. +......+++||..|+-+|+.+..+|
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445555555555445554444444444433 22223333457777777777777777
No 428
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.82 E-value=1.4e+02 Score=29.17 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVK-----DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 137 ~EKLEesE~Lik-----eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.-=|+..+.||. ..+.++.+|..+...+....+.||.+..+.+.+|+...
T Consensus 160 evLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 160 EVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777776 44666777766666666666666666666666665554
No 429
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=41.76 E-value=1.6e+02 Score=32.53 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 156 ALKAEFV-KAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 156 ALkkELe-kLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
-...++. .|.++...|..++..++.++..++.+|.+|+
T Consensus 171 ~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq 209 (629)
T KOG0963|consen 171 ETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQ 209 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 2666677777777777888888777777664
No 430
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=41.75 E-value=1.1e+02 Score=27.83 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++..+++.++...+..+...+.|+..|..=-..--+..+.|.....+|+.+|.
T Consensus 54 r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLkeel~ 106 (146)
T PF05852_consen 54 REECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKEELE 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555442111222333444445555555554
No 431
>PHA03161 hypothetical protein; Provisional
Probab=41.52 E-value=2.4e+02 Score=25.89 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
-++..+++.++...+..|.+.+.|+..|..=-..-.+..+.|.....+|+..|.
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~ 106 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIH 106 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555542111222333444444444444443
No 432
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=2.9e+02 Score=29.78 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSE---VFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsE---L~ALkkELekLqerNeELE 172 (341)
+.++.|.+++.+++..+.+.. +.+|+.+-.++.+++.+||
T Consensus 233 ~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 233 VEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELE 275 (521)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677777777777766555433 3344444444555554444
No 433
>PRK15396 murein lipoprotein; Provisional
Probab=41.38 E-value=1.6e+02 Score=24.09 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019419 150 LQSEVFALK 158 (341)
Q Consensus 150 LQsEL~ALk 158 (341)
|..++.++.
T Consensus 37 L~~kvdql~ 45 (78)
T PRK15396 37 LNAKVDQLS 45 (78)
T ss_pred HHHHHHHHH
Confidence 333333333
No 434
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.34 E-value=2.3e+02 Score=30.95 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.7
Q ss_pred ccccccchhhccc
Q 019419 316 IAHSSIVGEIQNR 328 (341)
Q Consensus 316 ~~~~~mIGEIeNR 328 (341)
+-..++.|+|+-+
T Consensus 456 ~E~~~~l~~~~~e 468 (581)
T KOG0995|consen 456 EEKIQILGEIELE 468 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 3445556666543
No 435
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=41.06 E-value=1.5e+02 Score=33.27 Aligned_cols=65 Identities=25% Similarity=0.234 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..-|..|++.|.-.+....-|++++++|..+++....+.+.....+..++.++..+..+|..|..
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d 385 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRD 385 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888888888888888888888877776666666666666666666666666655553
No 436
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.01 E-value=2.4e+02 Score=25.91 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 019419 174 QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~sL~ 193 (341)
+.-+.+.+++..-.+|.+|.
T Consensus 119 qll~hr~e~ee~~~~l~~le 138 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLE 138 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33344444544444444443
No 437
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.97 E-value=87 Score=29.35 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
+.+++.++.|...-+ ....-.++..++.+|.+.+.+.+.++.+.++|..+++
T Consensus 142 ~~l~~~~~rl~~ll~-ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 142 KNLEAEEERLLELLE-KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 438
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.55 E-value=2.1e+02 Score=30.30 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhh
Q 019419 211 DVQKLIANKLEH 222 (341)
Q Consensus 211 diqkl~a~KLe~ 222 (341)
.|+.+|+.++.-
T Consensus 124 r~~e~la~~~~~ 135 (459)
T KOG0288|consen 124 RIAERLAEALKD 135 (459)
T ss_pred HHHHHHHHHhhh
Confidence 445566665443
No 439
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=40.46 E-value=1.5e+02 Score=30.57 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=32.7
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 122 GKIEDGLMDKKKKEFEEKLMLSENLV-KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 122 ~~~~~~~~~~~~kel~EKLEesE~Li-keLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+++.|++..--..+++|..+++|... +-|++++++. ..|..|.+-.-..+++-.++-++|
T Consensus 171 ~K~~dEelrqA~eKfEESkE~aE~sM~nlle~d~eqv-sqL~~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 171 GKIKDEELRQALEKFEESKELAEDSMFNLLENDVEQV-SQLSALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555677777777777643 5667777665 344444444444444433333333
No 440
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.44 E-value=2.2e+02 Score=24.07 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|...+..+++.+..+..++..|+..+...++++..|+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777777777777777777776554
No 441
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.43 E-value=2.1e+02 Score=30.89 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+|.+|..+++.++.--.-+..+..+|.+.+.......+.+..+++.+.+.+..++.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888887775444444444444444443333333333333333333333333
No 442
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.35 E-value=2.1e+02 Score=25.39 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeE 170 (341)
+..+.+...|+.++....+.+..+...+..+..+.....+
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ 89 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAER 89 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444444444444333
No 443
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=40.11 E-value=2.1e+02 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELek 163 (341)
..+..++.|.+++..|+..+.+
T Consensus 49 a~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 49 AAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 444
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.10 E-value=2.3e+02 Score=30.30 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELe 162 (341)
...+.++++++++++.++.+.+++.++.++.++..
T Consensus 212 ~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~ 246 (646)
T PRK05771 212 TPSELIREIKEELEEIEKERESLLEELKELAKKYL 246 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777666666666666665554443
No 445
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=40.09 E-value=1.4e+02 Score=31.56 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
.++..+.++...|+.+.+.|-.+..+++++..+|.+...
T Consensus 137 Q~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k 175 (499)
T COG4372 137 QELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQK 175 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666777777777777777777765433
No 446
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.09 E-value=1.5e+02 Score=26.16 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
.+..|+++|-.+..++..+++...+|-.||.-|+-+...+..-+..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3567899999999999999999999999999999998888887755
No 447
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.04 E-value=1.4e+02 Score=30.76 Aligned_cols=45 Identities=22% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREA 200 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~ 200 (341)
.|..+++.|.++...|.+...=|..+++.+-.+..+|.+.+.|+.
T Consensus 250 kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~ 294 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEA 294 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhh
Confidence 344444455556666666666666666555555555665555533
No 448
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=39.95 E-value=1.5e+02 Score=24.93 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
++..++..++..+..+.+...--..|..+|++.+...-.++
T Consensus 12 ~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~ 52 (116)
T PF10552_consen 12 EHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSRVYEL 52 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333222222335556666665554444
No 449
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.92 E-value=2.6e+02 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
++..+.+...|+.+++...+.+..+...+.++..++....++
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655555555554445554444444333
No 450
>PRK14161 heat shock protein GrpE; Provisional
Probab=39.88 E-value=1.9e+02 Score=26.74 Aligned_cols=8 Identities=13% Similarity=0.522 Sum_probs=3.6
Q ss_pred HHHHhhhh
Q 019419 215 LIANKLEH 222 (341)
Q Consensus 215 l~a~KLe~ 222 (341)
|+.++|.+
T Consensus 106 mi~k~l~~ 113 (178)
T PRK14161 106 MTKDELDK 113 (178)
T ss_pred HHHHHHHH
Confidence 44444443
No 451
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.87 E-value=1.5e+02 Score=24.23 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
-++-+.++++..+..+.+++.++..+..++..+...
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 88 AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444433
No 452
>PRK11519 tyrosine kinase; Provisional
Probab=39.74 E-value=1.6e+02 Score=32.02 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekL 164 (341)
+.+..++...+|+.++..++.++...
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~a 286 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVA 286 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 453
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.68 E-value=1.8e+02 Score=26.04 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 169 eELEkENkELqqQLa~aEa 187 (341)
..|..++..|+.+++.++.
T Consensus 76 ~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544444
No 454
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.64 E-value=1.9e+02 Score=31.12 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019419 173 KQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 173 kENkELqqQLa~aEaEI~ 190 (341)
+|...|+.+|..+|.++.
T Consensus 309 kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777777777653
No 455
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=39.62 E-value=1.7e+02 Score=24.86 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
+.+.|-++..+.-+..|+..+..+..++..+.++.+.+.....++..
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666655555555555555555554444433
No 456
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.45 E-value=2.9e+02 Score=28.04 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.5
Q ss_pred HHHHhhhhhhh
Q 019419 215 LIANKLEHSIV 225 (341)
Q Consensus 215 l~a~KLe~s~~ 225 (341)
.+-+++|....
T Consensus 373 ~l~~r~eea~~ 383 (498)
T TIGR03007 373 QLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHH
Confidence 44455655443
No 457
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=39.43 E-value=1.2e+02 Score=28.30 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
...|++++..+.++++.+.++.+. ....|..|+.+++.-+.+|.
T Consensus 195 ~~~l~~~~~~~~~~i~~~~~rl~~---~~~~l~~qf~~me~~i~~ln 238 (239)
T PF07195_consen 195 IDSLNSQIKSLDKQIEDLEERLES---KEERLRKQFSAMESLISQLN 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555444333 33346666777776666554
No 458
>PF15294 Leu_zip: Leucine zipper
Probab=39.37 E-value=1.5e+02 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.190 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 172 EKQNKKLVEDLVAAEA 187 (341)
Q Consensus 172 EkENkELqqQLa~aEa 187 (341)
-+|...|+.+|..+..
T Consensus 159 l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 159 LDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544444
No 459
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=39.32 E-value=1.9e+02 Score=23.68 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 019419 175 NKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 175 NkELqqQLa~aEaEI~sL~ 193 (341)
.++|-.+++.+|.+|..|.
T Consensus 56 ~keLL~EIA~lE~eV~~LE 74 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLE 74 (88)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 460
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=39.09 E-value=2.2e+02 Score=25.55 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~AL 157 (341)
++..++++.+..+++.++...
T Consensus 68 e~~~~eA~~~~~e~e~~L~~A 88 (184)
T CHL00019 68 EERREEAIEKLEKARARLRQA 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433
No 461
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=39.05 E-value=1.3e+02 Score=29.33 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa 183 (341)
|+.++....+.|++||+.|+..|.
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555566666666665554
No 462
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=39.01 E-value=2.5e+02 Score=25.92 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~AL 157 (341)
-..++..++.+|...+.....++.++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 90 (322)
T TIGR01730 62 YQLALQAALAQLAAAEAQLELAQRSFERA 90 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666555555554444
No 463
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.87 E-value=2.9e+02 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN 168 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerN 168 (341)
++..+++...|+..+....+-+..+..-+.++...+...
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea 95 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQA 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444433333
No 464
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.60 E-value=1.6e+02 Score=28.99 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+|...+.-.++-..+|++|+..+++.+....
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566666666665555544
No 465
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.46 E-value=2.3e+02 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
+.|++.+++....-.+...+......+....+.|
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l 54 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDL 54 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 466
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.35 E-value=1.4e+02 Score=36.70 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+..|.++|+..++++.++..++..++ ...+.+.+.|..+...+..++..++.....|
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL 1372 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRL 1372 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.27 E-value=2.5e+02 Score=27.05 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchh
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~ 209 (341)
........++++..++-|.+|.-++..+.+.+..+...++.+.........++..+-.++ +..+.+--..|++-++|
T Consensus 94 E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKL---kEaE~rAE~aERsVakL 170 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKL---KEAETRAEFAERRVAKL 170 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhhhhhhhhhhh
Q 019419 210 KDVQKLIANKLEHSIVMTDAI 230 (341)
Q Consensus 210 kdiqkl~a~KLe~s~~~~~a~ 230 (341)
.+-+--+-.||+.-..+-..+
T Consensus 171 eke~DdlE~kl~~~k~ky~~~ 191 (205)
T KOG1003|consen 171 EKERDDLEEKLEEAKEKYEEA 191 (205)
T ss_pred cccHHHHHHhhHHHHHHHHHH
No 468
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.25 E-value=63 Score=25.93 Aligned_cols=60 Identities=27% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
|.++.+.+++.+...+.++..|++.=..| +......++--.-.++.+..|..++.+|..|
T Consensus 1 Ma~k~~sfEe~l~~LE~IV~~LE~~~l~L----eesl~~ye~G~~L~k~c~~~L~~ae~kv~~l 60 (75)
T PRK14064 1 MATKKKTFEEAIAELETIVEALENGSASL----EDSLDMYQKGIELTKLCQDKLQSAEKRMAKV 60 (75)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.15 E-value=3e+02 Score=24.66 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~ 198 (341)
.+..-+..+......+..+.++|..|......-......|..+.......+..-+.+|..|. ++|+
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~-~ENe 92 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLK-RENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCH
No 470
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=38.12 E-value=1.6e+02 Score=27.62 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVK--AQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELek--LqerNeELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
+++.+++...+.-++.|+.+...|.+-+++ -.+..-++|.+..+.+.+++.++.++..|..+
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 471
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.09 E-value=1.1e+02 Score=35.54 Aligned_cols=56 Identities=27% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALK---AEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALk---kELekLqerNeELEkENkELqqQLa~aEa 187 (341)
.+..|..+++++|..+.+|+-++++-- .=+++|-+.|-.||...+.|+..+..+|+
T Consensus 418 ~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 418 QKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
No 472
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.01 E-value=91 Score=28.81 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
++|....+|+.||..+..|+.-|++-..--|+...+|+.+|
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 473
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=38.00 E-value=4.3e+02 Score=27.69 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch---hccccccCCc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ---REAVGEYQSP 207 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~---~~~~~e~q~~ 207 (341)
.+++.....|+..|++....+++|..+..|+..++++-.+|....++-+.-.+.+-.=+..+--.+. .+..++=.-.
T Consensus 21 ~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~e~ 100 (508)
T PF04129_consen 21 NQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVNEQ 100 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCCHH
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 019419 208 KFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 208 ~~kdiqkl~a~KLe~s~~ 225 (341)
-++.+.+++.+++....+
T Consensus 101 ~~~~~~~~~~k~~~~~~~ 118 (508)
T PF04129_consen 101 YIEELLELLKKKIFFSKD 118 (508)
T ss_pred HHHHHHHHHHHHHHHHhh
No 474
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.89 E-value=2.6e+02 Score=28.14 Aligned_cols=69 Identities=22% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 121 ~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+....+|++.--+.-|+=+|++ .++|..++..|..+...+...|...+.....|..+|..+...+.-|+
T Consensus 81 ~~~~~~~~H~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 81 PELTEDDEHQLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred cccCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 475
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.80 E-value=1.6e+02 Score=31.48 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFAL-------KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~AL-------kkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+++++++++++..|..+.+|+.++..- .+++..+..+.++++.+..++..+-..+..++.++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=37.79 E-value=3.9e+02 Score=27.14 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKL 215 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl 215 (341)
|.|=++-.-..+..|+.++.+|..+.+.|...++.|..+..++...-...|.++ +.+..-+
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L-------------------~~KF~~v 188 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL-------------------YAKFVLV 188 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
Q ss_pred HHHh
Q 019419 216 IANK 219 (341)
Q Consensus 216 ~a~K 219 (341)
|..|
T Consensus 189 LNeK 192 (342)
T PF06632_consen 189 LNEK 192 (342)
T ss_dssp HHHH
T ss_pred HHhH
No 477
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.79 E-value=69 Score=32.65 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++.|+||+=..|.+.++-+++.|..|++-|++--.+++.+-..|..|.
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELE 48 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.77 E-value=3.5e+02 Score=31.71 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCC
Q 019419 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQS 206 (341)
Q Consensus 127 ~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~ 206 (341)
++...+++...-.+.+...=+++...++....+++..+...++.|..+-...+..+..+...|..+++.=+.-..-|.-.
T Consensus 286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~ 365 (1072)
T KOG0979|consen 286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPV 365 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccc
Q ss_pred chhhHHHH-HHHHhhh
Q 019419 207 PKFKDVQK-LIANKLE 221 (341)
Q Consensus 207 ~~~kdiqk-l~a~KLe 221 (341)
.++.+|.+ ++..+-+
T Consensus 366 ~~~~ei~~~~~~~~~~ 381 (1072)
T KOG0979|consen 366 EEDQEIMKEVLQKKSS 381 (1072)
T ss_pred hhHHHHHHHHHHHHhh
No 479
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.75 E-value=1.9e+02 Score=34.08 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCcccCCchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 019419 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVK--------DLQSEVFALKAEFVK----AQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 120 ~~~~~~~~~~~~~~kel~EKLEesE~Lik--------eLQsEL~ALkkELek----LqerNeELEkENkELqqQLa~a 185 (341)
|-++|.+|+.-..|.++.|+++-.-.... +++-.+..+.+=+++ |.++...+|..|.+++.+|..+
T Consensus 353 N~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 353 NHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=4.1e+02 Score=26.19 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kd 211 (341)
++...+++++.......+.++++...++=++.-....-.++.+.+.++++++.+..-+--|+. +.-|
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke-------------E~dd 118 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE-------------EKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhhh
Q ss_pred HHHHHHHhhh
Q 019419 212 VQKLIANKLE 221 (341)
Q Consensus 212 iqkl~a~KLe 221 (341)
-+.+|..|.|
T Consensus 119 ~keiIs~kr~ 128 (246)
T KOG4657|consen 119 SKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHH
No 481
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.62 E-value=93 Score=34.69 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQK 214 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqk 214 (341)
++||+|.-.+..+..|+-|+.-|...++..-+...+||-.+.+-+.+|-..|..+ .+++..++-
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL----------------Qqellsrts 171 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML----------------QQELLSRTS 171 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH----------------HHHHHhhhh
Q ss_pred HHHHhhh
Q 019419 215 LIANKLE 221 (341)
Q Consensus 215 l~a~KLe 221 (341)
|--+||+
T Consensus 172 LETqKlD 178 (861)
T KOG1899|consen 172 LETQKLD 178 (861)
T ss_pred HHHHHhH
No 482
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.60 E-value=1.8e+02 Score=31.72 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhc
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN----------------KKLVEDLVAAEAKIASL 192 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkEN----------------kELqqQLa~aEaEI~sL 192 (341)
..++.+.+...+-..+|+.++..++.++.......+.+..+| .+|+.|+..++.+...|
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=37.59 E-value=1.7e+02 Score=31.54 Aligned_cols=69 Identities=25% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHHh
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANK 219 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~K 219 (341)
|..++..+..+...|+....|++.+-........+..-++.+++..|.+-..|+-.... +++||+-
T Consensus 25 l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N--------------~k~L~~e 90 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSAN--------------QKLLLNE 90 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHH--------------HHHHHHH
Q ss_pred hhh
Q 019419 220 LEH 222 (341)
Q Consensus 220 Le~ 222 (341)
|+.
T Consensus 91 L~~ 93 (701)
T PF09763_consen 91 LEN 93 (701)
T ss_pred HHH
No 484
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=37.48 E-value=1.2e+02 Score=33.45 Aligned_cols=56 Identities=27% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
...+.++++-+|+-.+..+..||.+.+...++|.++..++...++++..++..+.+
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
No 485
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.40 E-value=1.9e+02 Score=29.59 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL----NAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer----NeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+++-++-++........++|+.+...+.+++...+.. .++|..+.++|..++..++.++..+..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=37.31 E-value=2.6e+02 Score=23.72 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchh
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEF-VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkEL-ekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~ 209 (341)
++..+-.+.-...+..+..+++||..|...| ......-..-..+...+..++..++.++ .......-....|...+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l---~e~~~~l~~lq~qL~~L 77 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL---KEKEALLESLQAQLKEL 77 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---THHCHCCCHCTSSSSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred hHH
Q 019419 210 KDV 212 (341)
Q Consensus 210 kdi 212 (341)
|.+
T Consensus 78 K~v 80 (100)
T PF06428_consen 78 KTV 80 (100)
T ss_dssp HHC
T ss_pred HHH
No 487
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=37.20 E-value=3.3e+02 Score=25.95 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~ 198 (341)
++.|-..+..+...+....--+.+=......-...++....|+.|....+.+|..+..+|..|....+.
T Consensus 118 eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 118 ERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 488
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.13 E-value=2.3e+02 Score=23.22 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 126 ~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
+++-+..+-+|+.++..-+..+.+|...|......+++++.+..-|=...++++.+
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 489
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=37.04 E-value=2.2e+02 Score=31.33 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhcccc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV----------AAEAKIASLSSR 195 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa----------~aEaEI~sL~~~ 195 (341)
.++++.|+.+|+..+.-..++..++..+..++..+...+..+..+...+...|- ++..+|..|+++
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 490
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=37.03 E-value=2e+02 Score=30.26 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
....+....|+...+....|+..+..|+.||...+.....|...-......+..++.++..+..
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~ 351 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
No 491
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.99 E-value=1e+02 Score=24.30 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
..+.-+..|.+.++..+..+..|+.++..+.+++..++..+..+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.92 E-value=1.6e+02 Score=26.04 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHHh
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV-EDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANK 219 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEkENkELq-qQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~K 219 (341)
...+.+..+|+.++.++..|+.+|.-+...+..+...-. +++..+..++ +.+..++.+..+.+-.+
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~-------------~~e~~~r~e~k~~l~~q 82 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQF-------------EQEKQERLEQKNQLLQQ 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 019419 220 LEH 222 (341)
Q Consensus 220 Le~ 222 (341)
|+.
T Consensus 83 l~q 85 (131)
T PF11068_consen 83 LEQ 85 (131)
T ss_dssp HHH
T ss_pred HHH
No 493
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=36.88 E-value=1.8e+02 Score=31.44 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCC
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV-KAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQS 206 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELe-kLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~ 206 (341)
+..+.+++++|+++..-..|.++-.++.-.++++. +.-..-...+.+...++++|+++-..+--++..+-.-.+-|-|.
T Consensus 409 e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg 488 (531)
T PF15450_consen 409 EMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQG 488 (531)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHH
Q ss_pred chhhHHHHHHHHhhhhhhh
Q 019419 207 PKFKDVQKLIANKLEHSIV 225 (341)
Q Consensus 207 ~~~kdiqkl~a~KLe~s~~ 225 (341)
.=. +.--+|||+|+.
T Consensus 489 ~l~----~~qi~kle~siq 503 (531)
T PF15450_consen 489 KLA----TNQIMKLENSIQ 503 (531)
T ss_pred HHH----HHHHHHHHHHHH
No 494
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=36.86 E-value=2.5e+02 Score=26.58 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+++..|+..+.....++.++..+..++..+....+.++.+....+.++..++.+....+
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 495
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=36.74 E-value=3e+02 Score=27.93 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK-QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk-ENkELqqQLa~aEaEI~sL~ 193 (341)
..+..|+++....+.....|++++..+..+++++...=+++|. -..+...=|-.++++|.+|+
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq 200 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQ 200 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 496
>PRK14153 heat shock protein GrpE; Provisional
Probab=36.59 E-value=1.4e+02 Score=27.97 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+-.|.|.+.++ +..+.++|..|+.++..+.++..-+..+..+++....+-..++
T Consensus 24 ~~~~~~~~~~~-~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 24 EEAEELKEEPE-DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred HHHHHHhhhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.56 E-value=1.9e+02 Score=27.15 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 122 GKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177 (341)
Q Consensus 122 ~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkE 177 (341)
..+++-...+.+..++++|+..+..+.+|+.++..+..+++.++.+...=..+..+
T Consensus 31 ~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~ 86 (195)
T PRK14148 31 GALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK 86 (195)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=36.52 E-value=2.3e+02 Score=32.22 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCCccCCCCCcceeEEEeecCccccccccCccccccccCCCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 80 SAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (341)
Q Consensus 80 s~~~~lgs~~~e~~~v~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkk 159 (341)
+++++--+.+-..++|+....-..++ ||=+-+.+ ..-++-+++..+...++...|......+-+
T Consensus 698 gGTHV~nTgeIG~~kI~~~e~i~~Gv------~RIe~v~G----------~~A~~~~~~~~~~l~~~a~~L~~~~~el~~ 761 (900)
T PRK13902 698 GGTHVSNTGEIGPIKILKTERIQDGV------ERLEFAAG----------DAAVEYIQELEDLLKEAAEILGVPPEQLPK 761 (900)
T ss_pred CCCCcCcHhhCeeEEEEEEEEecCCe------EEEEEEEC----------hHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
.++++.+.+.+|++++..|+.++...+.+
T Consensus 762 ~v~kl~ee~k~l~kei~~l~~~l~~~~~~ 790 (900)
T PRK13902 762 TVERFFEEWKEQKKEIEKLRKELAELLAS 790 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.50 E-value=3e+02 Score=30.43 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhccccccCCc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK--AQSLNAELEKQNKKLVEDLVAAEAKIASL---SSREQREAVGEYQSP 207 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELek--LqerNeELEkENkELqqQLa~aEaEI~sL---~~~~~~~~~~e~q~~ 207 (341)
..+|+.+++..++--+.|+.|+.+|++||-. |..-..-|-.|..++...|...-.++..- ..+...
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~--------- 307 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDN--------- 307 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc---------
Q ss_pred hhhHHHHHHHHhhhh
Q 019419 208 KFKDVQKLIANKLEH 222 (341)
Q Consensus 208 ~~kdiqkl~a~KLe~ 222 (341)
+-.|.++||.
T Consensus 308 -----~~~l~~~i~s 317 (683)
T PF08580_consen 308 -----PSKLSKQIES 317 (683)
T ss_pred -----hHHHHHHHHH
No 500
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.49 E-value=1.5e+02 Score=28.80 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL-----------------EKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL-----------------EkENkELqqQLa~aEaEI~sL~ 193 (341)
.+|..|..++....+.+..|+.+|+....+|.........- ++.+..=+.++..+|+++..|+
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Done!