Query 019419
Match_columns 341
No_of_seqs 115 out of 130
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnw_A Uncharacterized protein 95.3 0.1 3.5E-06 44.6 9.7 61 133-193 70-130 (138)
2 3hnw_A Uncharacterized protein 95.3 0.12 4E-06 44.3 10.0 70 121-190 63-134 (138)
3 2jee_A YIIU; FTSZ, septum, coi 95.3 0.15 5.2E-06 40.7 9.8 57 133-189 8-64 (81)
4 3a7p_A Autophagy protein 16; c 93.8 0.42 1.4E-05 42.0 10.0 47 136-182 87-133 (152)
5 3bas_A Myosin heavy chain, str 93.6 0.6 2.1E-05 36.9 9.8 64 130-193 20-83 (89)
6 2v71_A Nuclear distribution pr 93.2 0.82 2.8E-05 41.3 11.1 54 133-186 26-83 (189)
7 2q6q_A Spindle POLE BODY compo 92.6 0.99 3.4E-05 35.4 9.3 61 131-191 3-63 (74)
8 3o0z_A RHO-associated protein 91.9 1.2 3.9E-05 39.8 10.1 49 145-193 90-138 (168)
9 3u59_A Tropomyosin beta chain; 90.3 2.8 9.5E-05 33.5 10.1 45 149-193 48-92 (101)
10 2jee_A YIIU; FTSZ, septum, coi 90.2 1.9 6.5E-05 34.4 8.9 52 142-193 10-61 (81)
11 3u1c_A Tropomyosin alpha-1 cha 90.1 2.7 9.1E-05 33.9 9.9 7 186-192 85-91 (101)
12 2v4h_A NF-kappa-B essential mo 89.9 2.3 7.8E-05 35.7 9.5 34 132-165 25-58 (110)
13 3oja_B Anopheles plasmodium-re 89.6 1.7 5.9E-05 42.4 10.0 60 132-191 464-541 (597)
14 3mq9_A Bone marrow stromal ant 89.0 1.8 6E-05 41.5 9.5 16 149-164 401-416 (471)
15 2xdj_A Uncharacterized protein 88.9 4.7 0.00016 31.9 10.3 60 132-191 7-66 (83)
16 2yy0_A C-MYC-binding protein; 88.9 0.39 1.3E-05 35.2 3.7 32 152-183 19-50 (53)
17 3he5_A Synzip1; heterodimeric 88.8 2.5 8.5E-05 30.4 7.7 45 145-189 3-47 (49)
18 3na7_A HP0958; flagellar bioge 88.3 3.2 0.00011 37.6 10.3 60 133-192 27-86 (256)
19 3htk_A Structural maintenance 87.9 5 0.00017 28.7 9.1 54 130-183 4-57 (60)
20 3ghg_A Fibrinogen alpha chain; 87.9 1.7 6E-05 44.7 9.0 54 170-237 114-167 (562)
21 3cve_A Homer protein homolog 1 87.8 4.8 0.00016 31.4 9.4 57 135-191 4-60 (72)
22 2dgc_A Protein (GCN4); basic d 87.3 2.2 7.5E-05 31.9 7.1 41 142-182 20-60 (63)
23 1wt6_A Myotonin-protein kinase 86.9 5.1 0.00017 32.0 9.3 61 133-193 12-72 (81)
24 3trt_A Vimentin; cytoskeleton, 86.9 7.5 0.00026 29.1 10.0 64 130-193 8-76 (77)
25 2fxo_A Myosin heavy chain, car 86.8 4.9 0.00017 33.4 9.7 23 133-155 36-58 (129)
26 4gkw_A Spindle assembly abnorm 86.7 3.2 0.00011 36.3 8.7 60 130-189 24-83 (167)
27 3nmd_A CGMP dependent protein 86.7 2.9 9.8E-05 32.7 7.6 25 166-190 40-64 (72)
28 1ic2_A Tropomyosin alpha chain 86.7 7.5 0.00026 29.9 10.0 14 132-145 7-20 (81)
29 3hd7_A Vesicle-associated memb 86.4 10 0.00036 29.8 11.0 58 129-186 3-60 (91)
30 2dfs_A Myosin-5A; myosin-V, in 86.4 2.4 8.3E-05 46.3 9.7 20 151-170 983-1002(1080)
31 1hjb_A Ccaat/enhancer binding 86.3 8.6 0.00029 30.7 10.4 44 151-194 35-78 (87)
32 1ci6_A Transcription factor AT 86.2 4.3 0.00015 30.2 8.2 35 152-186 23-57 (63)
33 1gd2_E Transcription factor PA 86.2 1.3 4.4E-05 34.2 5.4 37 146-189 30-66 (70)
34 3oja_A Leucine-rich immune mol 86.2 3.5 0.00012 39.6 9.7 61 133-193 416-476 (487)
35 2v71_A Nuclear distribution pr 86.1 5.8 0.0002 35.7 10.4 39 134-172 45-83 (189)
36 4emc_A Monopolin complex subun 85.9 1.8 6.2E-05 39.2 7.0 46 133-178 8-53 (190)
37 3a7o_A Autophagy protein 16; c 85.8 3.2 0.00011 32.6 7.5 62 126-187 13-74 (75)
38 4etp_A Kinesin-like protein KA 85.8 1.6 5.4E-05 42.6 7.2 57 132-188 4-60 (403)
39 1t2k_D Cyclic-AMP-dependent tr 85.7 2.7 9.1E-05 30.8 6.7 23 163-185 33-55 (61)
40 1ic2_A Tropomyosin alpha chain 85.0 8.9 0.00031 29.4 9.8 46 138-183 20-65 (81)
41 3efg_A Protein SLYX homolog; x 85.0 2.5 8.7E-05 32.9 6.6 42 124-165 7-48 (78)
42 3qh9_A Liprin-beta-2; coiled-c 84.9 5.6 0.00019 31.8 8.6 50 133-182 28-77 (81)
43 4h22_A Leucine-rich repeat fli 84.7 4.9 0.00017 33.3 8.5 37 157-193 35-71 (103)
44 3mq7_A Bone marrow stromal ant 84.3 4.6 0.00016 34.3 8.3 42 156-197 61-102 (121)
45 2v66_B Nuclear distribution pr 84.1 9.6 0.00033 31.8 10.1 20 130-149 2-21 (111)
46 3i00_A HIP-I, huntingtin-inter 84.1 8.5 0.00029 32.2 9.9 44 142-185 37-80 (120)
47 3u1c_A Tropomyosin alpha-1 cha 83.1 11 0.00038 30.2 9.9 36 150-185 35-70 (101)
48 3cvf_A Homer-3, homer protein 82.7 5.3 0.00018 31.6 7.6 59 133-191 8-66 (79)
49 3m91_A Proteasome-associated A 82.7 4.6 0.00016 29.5 6.7 42 152-193 9-50 (51)
50 3u06_A Protein claret segregat 82.6 4 0.00014 40.1 8.5 59 130-188 2-60 (412)
51 2wt7_A Proto-oncogene protein 82.2 5.2 0.00018 29.6 7.1 31 156-186 27-57 (63)
52 1nkp_B MAX protein, MYC proto- 81.5 1.7 5.7E-05 33.4 4.3 37 138-174 40-76 (83)
53 2dfs_A Myosin-5A; myosin-V, in 81.4 6.9 0.00024 42.8 10.6 33 141-173 980-1012(1080)
54 1cii_A Colicin IA; bacteriocin 81.4 9.1 0.00031 39.4 10.6 76 116-191 326-416 (602)
55 1lwu_C Fibrinogen gamma chain; 81.3 4.2 0.00014 39.1 7.9 53 130-189 4-56 (323)
56 1jnm_A Proto-oncogene C-JUN; B 80.9 2 6.9E-05 31.6 4.4 30 164-193 27-56 (62)
57 2fxo_A Myosin heavy chain, car 80.8 13 0.00043 30.8 9.7 36 130-165 19-54 (129)
58 3m9b_A Proteasome-associated A 80.6 1.2 3.9E-05 42.0 3.7 45 153-197 55-99 (251)
59 3cve_A Homer protein homolog 1 80.6 13 0.00043 29.0 8.9 52 134-185 17-68 (72)
60 2eqb_B RAB guanine nucleotide 80.6 21 0.00073 29.2 10.7 58 131-188 5-62 (97)
61 3mq7_A Bone marrow stromal ant 80.5 9.8 0.00034 32.3 8.9 45 148-192 60-104 (121)
62 2v66_B Nuclear distribution pr 80.4 12 0.00043 31.1 9.5 60 134-193 20-83 (111)
63 1sfc_A VAMP 2, protein (synapt 80.3 20 0.00068 28.6 10.4 53 129-181 28-80 (96)
64 3na7_A HP0958; flagellar bioge 80.3 8.4 0.00029 34.9 9.2 49 145-193 32-80 (256)
65 3ol1_A Vimentin; structural ge 80.3 13 0.00046 30.5 9.7 29 133-161 22-50 (119)
66 3tnu_B Keratin, type II cytosk 80.2 14 0.00048 30.4 9.8 50 144-193 35-95 (129)
67 1ci6_A Transcription factor AT 79.8 6.1 0.00021 29.3 6.7 26 153-178 31-56 (63)
68 2wt7_A Proto-oncogene protein 79.8 16 0.00054 26.9 10.0 26 164-189 28-53 (63)
69 3a7p_A Autophagy protein 16; c 79.7 14 0.00049 32.4 10.0 53 142-194 72-124 (152)
70 3ghg_A Fibrinogen alpha chain; 79.6 4.9 0.00017 41.5 8.1 68 149-216 114-185 (562)
71 2efr_A General control protein 79.4 14 0.00047 32.3 9.8 60 130-189 41-114 (155)
72 1wt6_A Myotonin-protein kinase 79.2 13 0.00045 29.7 8.7 35 151-185 37-71 (81)
73 3tnu_A Keratin, type I cytoske 78.8 12 0.00041 31.0 9.0 56 138-193 38-97 (131)
74 3cvf_A Homer-3, homer protein 78.8 15 0.0005 29.1 8.9 52 134-185 23-74 (79)
75 1t2k_D Cyclic-AMP-dependent tr 78.7 16 0.00056 26.5 9.6 26 166-191 29-54 (61)
76 3o0z_A RHO-associated protein 78.1 11 0.00039 33.4 9.1 21 138-158 55-75 (168)
77 3lay_A Zinc resistance-associa 77.5 18 0.00061 31.9 10.1 60 129-188 69-135 (175)
78 3htk_A Structural maintenance 77.5 17 0.00057 25.9 8.8 52 138-189 5-56 (60)
79 1gd2_E Transcription factor PA 77.3 5.1 0.00017 30.8 5.8 39 131-176 29-67 (70)
80 3bas_A Myosin heavy chain, str 77.1 24 0.00083 27.6 10.8 50 145-194 21-70 (89)
81 1nkp_A C-MYC, MYC proto-oncoge 77.1 5.4 0.00019 31.3 6.1 41 138-178 45-85 (88)
82 4etp_A Kinesin-like protein KA 76.7 6.3 0.00021 38.4 7.7 14 285-298 243-256 (403)
83 3efg_A Protein SLYX homolog; x 76.1 8.9 0.0003 29.8 6.9 50 135-184 11-60 (78)
84 2no2_A HIP-I, huntingtin-inter 75.8 21 0.00071 29.2 9.4 45 149-193 58-102 (107)
85 4h22_A Leucine-rich repeat fli 75.7 8 0.00027 32.1 6.9 48 134-181 33-80 (103)
86 3vkg_A Dynein heavy chain, cyt 75.1 10 0.00035 46.3 10.2 67 128-194 2011-2084(3245)
87 2oqq_A Transcription factor HY 75.1 12 0.00042 26.6 6.7 37 146-182 4-40 (42)
88 1gu4_A CAAT/enhancer binding p 74.6 22 0.00077 27.7 8.9 26 167-192 44-69 (78)
89 3nmd_A CGMP dependent protein 74.6 9.5 0.00032 29.8 6.7 19 167-185 48-66 (72)
90 3vkg_A Dynein heavy chain, cyt 74.2 11 0.00038 46.0 10.2 36 153-188 2015-2050(3245)
91 2ocy_A RAB guanine nucleotide 73.4 22 0.00074 31.2 9.4 34 130-163 57-90 (154)
92 1jnm_A Proto-oncogene C-JUN; B 73.2 8 0.00027 28.3 5.7 31 156-186 26-56 (62)
93 1l8d_A DNA double-strand break 73.1 32 0.0011 27.0 9.9 31 132-162 11-41 (112)
94 4gkw_A Spindle assembly abnorm 72.9 39 0.0013 29.6 10.8 60 130-189 10-76 (167)
95 2xdj_A Uncharacterized protein 72.5 16 0.00055 28.8 7.7 46 149-194 10-55 (83)
96 1i84_S Smooth muscle myosin he 72.3 11 0.00038 41.2 8.9 33 132-164 865-897 (1184)
97 3q8t_A Beclin-1; autophagy, AT 71.8 30 0.001 27.6 9.3 25 134-158 7-31 (96)
98 2oto_A M protein; helical coil 71.7 31 0.0011 29.1 9.9 53 133-185 31-83 (155)
99 1wle_A Seryl-tRNA synthetase; 71.6 21 0.0007 36.1 10.1 33 131-163 70-102 (501)
100 3jsv_C NF-kappa-B essential mo 71.3 24 0.00081 28.8 8.6 33 133-165 4-36 (94)
101 1m1j_A Fibrinogen alpha subuni 71.0 39 0.0013 34.5 11.9 61 163-237 108-168 (491)
102 1nlw_A MAD protein, MAX dimeri 70.3 9.1 0.00031 29.6 5.7 37 138-174 40-76 (80)
103 1go4_E MAD1 (mitotic arrest de 70.0 44 0.0015 27.4 10.3 64 131-194 12-96 (100)
104 1x79_B RAB GTPase binding effe 69.8 13 0.00043 31.2 6.8 30 131-160 45-74 (112)
105 2pnv_A Small conductance calci 69.3 9.6 0.00033 27.0 5.1 32 162-193 12-43 (43)
106 1nkp_B MAX protein, MYC proto- 69.0 8.4 0.00029 29.4 5.3 34 161-194 49-82 (83)
107 1deq_A Fibrinogen (alpha chain 68.5 35 0.0012 34.0 10.7 30 165-194 112-141 (390)
108 1vcs_A Vesicle transport throu 68.4 9.8 0.00033 30.5 5.7 55 130-184 37-92 (102)
109 1i84_S Smooth muscle myosin he 68.2 15 0.00052 40.1 8.9 41 132-172 858-898 (1184)
110 1gu4_A CAAT/enhancer binding p 67.4 9.8 0.00034 29.7 5.4 48 146-193 30-77 (78)
111 2eqb_B RAB guanine nucleotide 67.1 19 0.00065 29.5 7.2 31 133-163 28-58 (97)
112 3s4r_A Vimentin; alpha-helix, 66.6 41 0.0014 26.6 9.0 9 147-155 32-40 (93)
113 3tnu_B Keratin, type II cytosk 66.6 52 0.0018 26.9 10.0 51 133-183 45-99 (129)
114 2qyw_A Vesicle transport throu 66.2 14 0.0005 29.5 6.3 28 131-158 49-76 (102)
115 3tnu_A Keratin, type I cytoske 66.1 54 0.0018 27.0 10.0 39 142-180 35-73 (131)
116 3qne_A Seryl-tRNA synthetase, 66.1 19 0.00066 36.3 8.6 64 130-193 32-98 (485)
117 3onj_A T-snare VTI1; helix, HA 66.0 33 0.0011 27.1 8.3 55 131-185 34-92 (97)
118 2dq0_A Seryl-tRNA synthetase; 65.8 19 0.00065 35.7 8.4 23 133-155 40-62 (455)
119 2xnx_M M protein, M1-BC1; cell 65.6 13 0.00046 32.4 6.4 61 133-193 42-107 (146)
120 3qh9_A Liprin-beta-2; coiled-c 65.5 35 0.0012 27.2 8.2 46 148-193 29-74 (81)
121 1g6u_A Domain swapped dimer; d 65.2 22 0.00075 25.4 6.3 43 150-193 5-47 (48)
122 2efr_A General control protein 65.1 46 0.0016 29.0 9.8 62 130-191 76-137 (155)
123 2zvf_A Alanyl-tRNA synthetase; 64.8 7.1 0.00024 32.6 4.4 53 134-186 7-59 (171)
124 2wt7_B Transcription factor MA 64.6 36 0.0012 27.4 8.3 16 143-158 26-41 (90)
125 3swk_A Vimentin; cytoskeleton, 64.4 27 0.00093 27.3 7.5 50 133-182 30-79 (86)
126 3swf_A CGMP-gated cation chann 63.1 44 0.0015 26.2 8.3 30 134-163 3-32 (74)
127 3swy_A Cyclic nucleotide-gated 63.0 31 0.0011 24.7 6.9 29 135-163 2-30 (46)
128 1m1j_B Fibrinogen beta chain; 63.0 40 0.0014 34.0 10.2 17 130-146 99-115 (464)
129 3w03_C DNA repair protein XRCC 62.3 19 0.00065 32.3 6.9 43 141-183 141-183 (184)
130 2yy0_A C-MYC-binding protein; 62.1 18 0.0006 26.3 5.5 29 160-188 20-48 (53)
131 1l8d_A DNA double-strand break 61.9 27 0.00093 27.3 7.2 34 150-183 69-102 (112)
132 1zxa_A CGMP-dependent protein 61.7 14 0.00049 28.3 5.2 43 130-172 10-52 (67)
133 2wt7_B Transcription factor MA 61.3 18 0.00062 29.1 6.0 42 152-193 48-89 (90)
134 2w6a_A ARF GTPase-activating p 61.0 32 0.0011 26.2 6.9 42 152-193 20-61 (63)
135 2b9c_A Striated-muscle alpha t 60.8 58 0.002 27.8 9.5 67 130-196 51-124 (147)
136 1lwu_C Fibrinogen gamma chain; 60.5 24 0.00083 33.9 7.8 46 148-193 8-53 (323)
137 3i00_A HIP-I, huntingtin-inter 59.9 35 0.0012 28.5 7.8 34 160-193 41-74 (120)
138 1hjb_A Ccaat/enhancer binding 59.5 18 0.00061 28.8 5.6 30 164-193 41-70 (87)
139 3he5_B Synzip2; heterodimeric 59.0 40 0.0014 24.4 6.8 38 152-189 10-47 (52)
140 3m0d_C TNF receptor-associated 59.0 52 0.0018 24.4 9.1 38 130-167 5-42 (65)
141 3b5n_A Synaptobrevin homolog 1 59.0 48 0.0017 24.0 9.9 56 130-185 1-56 (61)
142 4b4t_K 26S protease regulatory 59.0 14 0.00049 36.3 6.1 48 147-194 44-91 (428)
143 3oja_A Leucine-rich immune mol 58.4 52 0.0018 31.4 9.8 53 141-193 417-469 (487)
144 2v8f_C MDIA1, profilin IIA; al 57.5 7.6 0.00026 25.0 2.5 8 241-248 2-9 (26)
145 3cl3_D NF-kappa-B essential mo 57.2 4.9 0.00017 34.5 2.1 59 131-189 9-71 (130)
146 3ra3_A P1C; coiled coil domain 57.2 10 0.00035 24.5 3.1 24 170-193 4-27 (28)
147 3q8t_A Beclin-1; autophagy, AT 57.0 72 0.0025 25.4 11.3 29 138-166 25-53 (96)
148 2zqm_A Prefoldin beta subunit 56.6 42 0.0014 26.2 7.4 32 133-164 72-103 (117)
149 1gmj_A ATPase inhibitor; coile 56.2 51 0.0017 26.4 7.7 25 160-184 52-76 (84)
150 1a93_B MAX protein, coiled coi 56.1 17 0.00059 24.8 4.2 23 152-174 7-29 (34)
151 1go4_E MAD1 (mitotic arrest de 55.8 20 0.0007 29.4 5.5 32 160-191 13-44 (100)
152 2zqm_A Prefoldin beta subunit 55.2 41 0.0014 26.2 7.1 37 148-184 73-109 (117)
153 3gp4_A Transcriptional regulat 55.1 68 0.0023 26.6 8.8 42 148-189 84-125 (142)
154 3s9g_A Protein hexim1; cyclin 55.0 43 0.0015 27.8 7.3 51 148-198 33-83 (104)
155 3lss_A Seryl-tRNA synthetase; 54.2 52 0.0018 33.2 9.3 15 175-189 113-127 (484)
156 4etp_B Spindle POLE BODY-assoc 54.0 25 0.00084 34.3 6.6 31 152-182 3-33 (333)
157 1dh3_A Transcription factor CR 54.0 48 0.0016 24.0 6.7 17 170-186 33-49 (55)
158 1wle_A Seryl-tRNA synthetase; 53.9 67 0.0023 32.4 10.1 29 130-158 76-104 (501)
159 2z5i_A TM, general control pro 53.9 50 0.0017 23.8 6.8 39 136-174 3-41 (52)
160 1dip_A Delta-sleep-inducing pe 53.8 11 0.00037 29.9 3.4 26 155-180 18-43 (78)
161 2lw1_A ABC transporter ATP-bin 53.6 59 0.002 25.0 7.7 52 137-188 21-78 (89)
162 3s9g_A Protein hexim1; cyclin 53.5 69 0.0024 26.6 8.3 42 151-192 43-84 (104)
163 1t3j_A Mitofusin 1; coiled coi 53.5 73 0.0025 26.0 8.4 41 146-186 48-91 (96)
164 1dh3_A Transcription factor CR 53.5 24 0.0008 25.6 5.0 20 161-180 31-50 (55)
165 1ses_A Seryl-tRNA synthetase; 53.5 30 0.001 33.8 7.3 30 131-160 28-57 (421)
166 3a7o_A Autophagy protein 16; c 53.3 30 0.001 27.2 5.8 37 133-169 34-70 (75)
167 1m1j_B Fibrinogen beta chain; 53.2 59 0.002 32.8 9.5 15 136-150 98-112 (464)
168 4e61_A Protein BIM1; EB1-like 53.1 71 0.0024 26.4 8.4 41 149-189 15-55 (106)
169 1a93_B MAX protein, coiled coi 52.5 21 0.00073 24.3 4.2 27 159-185 7-33 (34)
170 1l4a_D S-SNAP25 fusion protein 52.4 81 0.0028 24.5 9.3 68 122-189 14-81 (87)
171 2v4h_A NF-kappa-B essential mo 52.1 33 0.0011 28.7 6.3 62 132-193 32-103 (110)
172 2nps_A VAMP-4, vesicle-associa 52.1 68 0.0023 24.0 7.6 56 130-185 7-62 (74)
173 1kd8_B GABH BLL, GCN4 acid bas 51.1 39 0.0013 23.3 5.4 8 167-174 16-23 (36)
174 1fmh_A General control protein 50.8 25 0.00085 23.5 4.2 30 153-189 2-31 (33)
175 3ol1_A Vimentin; structural ge 50.3 1E+02 0.0035 25.1 10.1 53 133-185 50-102 (119)
176 3he5_B Synzip2; heterodimeric 49.9 43 0.0015 24.2 5.8 39 155-193 6-44 (52)
177 1gl2_A Endobrevin; membrane pr 49.9 74 0.0025 23.3 7.9 52 129-180 7-58 (65)
178 2oxj_A Hybrid alpha/beta pepti 49.6 31 0.0011 23.5 4.7 25 156-180 5-29 (34)
179 1fmh_A General control protein 49.5 25 0.00084 23.5 4.1 15 150-164 6-20 (33)
180 3m9b_A Proteasome-associated A 49.2 22 0.00076 33.4 5.3 39 149-187 58-96 (251)
181 3m91_A Proteasome-associated A 49.1 73 0.0025 23.1 7.2 36 149-184 13-48 (51)
182 1uii_A Geminin; human, DNA rep 48.8 65 0.0022 25.8 7.2 25 149-173 50-74 (83)
183 1kd8_A GABH AIV, GCN4 acid bas 48.7 36 0.0012 23.4 4.9 25 135-159 5-29 (36)
184 2lf0_A Uncharacterized protein 48.5 15 0.00052 31.2 3.7 51 151-201 9-64 (123)
185 1jcd_A Major outer membrane li 48.5 76 0.0026 23.1 7.9 23 150-172 9-31 (52)
186 2dgc_A Protein (GCN4); basic d 48.0 28 0.00095 25.9 4.8 31 159-189 30-60 (63)
187 1n7s_A Vesicle-associated memb 47.5 77 0.0026 22.9 10.1 53 130-182 3-55 (63)
188 1sfc_D Protein (SNAP-25B), pro 47.5 95 0.0033 23.9 10.9 62 130-191 21-82 (87)
189 3u06_A Protein claret segregat 47.4 64 0.0022 31.6 8.5 22 164-185 15-36 (412)
190 1fxk_A Prefoldin; archaeal pro 46.6 51 0.0018 25.3 6.3 33 133-165 67-99 (107)
191 1gk7_A Vimentin; intermediate 45.8 53 0.0018 22.5 5.5 31 153-183 7-37 (39)
192 3qne_A Seryl-tRNA synthetase, 45.6 66 0.0022 32.5 8.5 26 131-156 40-65 (485)
193 3m48_A General control protein 45.5 34 0.0012 23.2 4.3 24 156-179 4-27 (33)
194 3iv1_A Tumor susceptibility ge 45.5 1.1E+02 0.0036 24.2 7.9 58 132-189 12-69 (78)
195 2w83_C C-JUN-amino-terminal ki 45.3 39 0.0013 26.7 5.4 46 133-178 32-77 (77)
196 2dq0_A Seryl-tRNA synthetase; 45.0 61 0.0021 32.1 8.0 60 130-189 30-92 (455)
197 1m1j_C Fibrinogen gamma chain; 44.9 56 0.0019 32.3 7.7 20 131-150 38-57 (409)
198 2l5g_A GPS2 protein, G protein 44.8 33 0.0011 23.9 4.3 26 139-164 9-34 (38)
199 3lay_A Zinc resistance-associa 44.8 1.2E+02 0.0041 26.6 9.1 53 137-189 70-129 (175)
200 2no2_A HIP-I, huntingtin-inter 44.7 1.3E+02 0.0043 24.5 9.4 29 130-158 14-42 (107)
201 2xnx_M M protein, M1-BC1; cell 44.2 85 0.0029 27.4 7.9 21 174-194 81-101 (146)
202 3mud_A DNA repair protein XRCC 43.9 87 0.003 28.0 8.1 39 136-174 126-164 (175)
203 1nkp_A C-MYC, MYC proto-oncoge 43.9 44 0.0015 26.1 5.5 30 164-193 57-86 (88)
204 4e61_A Protein BIM1; EB1-like 43.7 57 0.0019 27.1 6.4 10 209-218 89-98 (106)
205 1fxk_A Prefoldin; archaeal pro 43.7 54 0.0019 25.2 6.1 34 149-182 69-102 (107)
206 1t6f_A Geminin; coiled-coil, c 43.4 46 0.0016 23.0 4.8 19 153-171 15-33 (37)
207 2zxx_A Geminin; coiled-coil, c 43.0 1.2E+02 0.0042 23.9 8.1 36 133-172 26-61 (79)
208 1joc_A EEA1, early endosomal a 43.0 1.4E+02 0.0047 24.5 9.7 29 135-163 8-36 (125)
209 3q0x_A Centriole protein; cent 42.9 65 0.0022 29.7 7.3 30 130-159 163-192 (228)
210 1p9i_A Cortexillin I/GCN4 hybr 42.9 33 0.0011 22.6 3.9 26 164-189 4-29 (31)
211 1ytz_T Troponin T; muscle, THI 42.8 88 0.003 25.7 7.4 25 169-193 59-83 (107)
212 1m1j_C Fibrinogen gamma chain; 42.5 49 0.0017 32.7 6.9 20 170-189 116-135 (409)
213 2wuj_A Septum site-determining 42.4 22 0.00076 25.8 3.4 6 155-160 37-42 (57)
214 1am9_A Srebp-1A, protein (ster 42.1 52 0.0018 25.2 5.6 29 139-167 44-72 (82)
215 4emc_A Monopolin complex subun 42.1 1.1E+02 0.0038 27.7 8.6 13 286-298 167-179 (190)
216 2wq1_A General control protein 41.8 48 0.0016 22.5 4.6 23 135-157 4-26 (33)
217 3c3g_A Alpha/beta peptide with 41.8 48 0.0016 22.5 4.6 14 161-174 9-22 (33)
218 2w6a_A ARF GTPase-activating p 41.7 85 0.0029 23.9 6.5 41 139-179 21-61 (63)
219 1ik9_A DNA repair protein XRCC 41.0 2E+02 0.0069 25.8 11.0 41 138-178 125-165 (213)
220 2pms_C Pneumococcal surface pr 40.9 1.7E+02 0.0057 24.9 10.0 62 150-221 49-111 (125)
221 4b6x_A AVRRPS4, avirulence pro 40.9 1.4E+02 0.0048 24.0 9.3 25 134-158 25-49 (90)
222 1hx1_B BAG-1, BAG-family molec 40.6 1.1E+02 0.0038 25.7 7.7 73 142-222 15-97 (114)
223 1hlo_A Protein (transcription 40.4 26 0.0009 26.5 3.7 26 140-165 52-77 (80)
224 2r2v_A GCN4 leucine zipper; co 39.9 55 0.0019 22.3 4.7 26 133-158 3-28 (34)
225 3mq9_A Bone marrow stromal ant 39.9 1.2E+02 0.004 28.9 8.9 57 136-192 402-469 (471)
226 1fxk_C Protein (prefoldin); ar 39.9 1.3E+02 0.0043 24.2 8.0 43 129-171 86-128 (133)
227 1gl2_D Syntaxin 8, vesicle tra 39.8 1E+02 0.0035 22.2 8.2 57 133-189 4-60 (65)
228 3swk_A Vimentin; cytoskeleton, 39.3 1.3E+02 0.0046 23.3 7.9 35 133-167 2-36 (86)
229 1wlq_A Geminin; coiled-coil; 2 39.0 92 0.0031 24.9 6.7 37 133-173 30-66 (83)
230 1fxk_C Protein (prefoldin); ar 38.8 1.4E+02 0.0048 23.9 8.1 42 138-179 88-129 (133)
231 2b9c_A Striated-muscle alpha t 38.7 1.8E+02 0.0063 24.7 10.4 23 133-155 26-48 (147)
232 1ik9_A DNA repair protein XRCC 38.7 2.2E+02 0.0075 25.6 10.9 43 140-182 134-176 (213)
233 3oa7_A Head morphogenesis prot 38.3 37 0.0013 31.2 4.8 66 123-188 5-73 (206)
234 3mud_A DNA repair protein XRCC 38.2 1.4E+02 0.0049 26.6 8.5 51 139-189 122-172 (175)
235 2dq3_A Seryl-tRNA synthetase; 38.1 44 0.0015 32.6 5.8 63 131-193 37-109 (425)
236 1kd8_B GABH BLL, GCN4 acid bas 38.1 72 0.0025 22.0 5.1 29 133-161 3-31 (36)
237 3gp4_A Transcriptional regulat 38.1 1.4E+02 0.0046 24.7 8.0 7 167-173 96-102 (142)
238 3kin_B Kinesin heavy chain; mo 38.0 45 0.0015 27.3 5.0 32 134-165 85-116 (117)
239 3plt_A Sphingolipid long chain 37.8 67 0.0023 29.8 6.6 25 169-193 134-158 (234)
240 1kd8_A GABH AIV, GCN4 acid bas 37.8 62 0.0021 22.3 4.8 27 156-182 5-31 (36)
241 4dyl_A Tyrosine-protein kinase 36.9 2.2E+02 0.0076 27.1 10.4 83 133-247 304-402 (406)
242 1i6z_A BAG-family molecular ch 36.9 89 0.003 26.9 6.8 59 140-198 23-91 (135)
243 1fzc_C Fibrin; blood coagulati 36.7 19 0.00065 34.5 2.9 41 150-190 9-49 (319)
244 4dci_A Uncharacterized protein 36.3 2E+02 0.0068 24.9 9.0 39 124-162 22-60 (150)
245 1wlq_A Geminin; coiled-coil; 2 35.9 1.2E+02 0.004 24.3 6.8 20 157-176 43-62 (83)
246 3b5n_D Protein transport prote 35.7 1.3E+02 0.0045 22.2 9.7 56 134-189 6-61 (64)
247 2wvr_A Geminin; DNA replicatio 35.2 1.1E+02 0.0038 28.1 7.5 39 148-186 118-159 (209)
248 1x79_B RAB GTPase binding effe 34.7 2E+02 0.0068 23.9 9.6 30 164-193 36-65 (112)
249 3trt_A Vimentin; cytoskeleton, 34.6 1.4E+02 0.0047 22.1 6.9 25 159-183 49-73 (77)
250 3okq_A BUD site selection prot 34.6 2.3E+02 0.0077 24.6 10.9 57 133-189 16-77 (141)
251 3fpp_A Macrolide-specific effl 34.5 1.3E+02 0.0045 26.9 8.0 25 133-157 71-95 (341)
252 4dk0_A Putative MACA; alpha-ha 34.4 98 0.0033 28.1 7.1 24 138-161 70-93 (369)
253 4egx_A Kinesin-like protein KI 34.4 1E+02 0.0036 26.8 7.0 22 132-153 6-27 (184)
254 3swf_A CGMP-gated cation chann 34.3 1.6E+02 0.0053 23.1 7.2 46 143-191 5-50 (74)
255 3viq_B Mating-type switching p 34.3 1.7E+02 0.0058 23.3 7.6 18 174-191 52-69 (85)
256 3c3f_A Alpha/beta peptide with 33.8 75 0.0026 21.6 4.6 14 161-174 10-23 (34)
257 2ve7_A Kinetochore protein HEC 33.7 46 0.0016 31.3 5.0 39 145-183 167-209 (315)
258 2wvr_A Geminin; DNA replicatio 33.7 1.1E+02 0.0038 28.1 7.2 17 152-168 129-145 (209)
259 1deq_A Fibrinogen (alpha chain 33.5 1.5E+02 0.005 29.6 8.5 41 149-189 117-157 (390)
260 1ses_A Seryl-tRNA synthetase; 33.5 84 0.0029 30.7 6.9 26 130-155 34-59 (421)
261 2ve7_A Kinetochore protein HEC 33.4 27 0.00092 32.9 3.3 21 169-189 188-208 (315)
262 2bni_A General control protein 33.4 60 0.0021 22.1 4.1 20 136-155 6-25 (34)
263 3q0x_A Centriole protein; cent 33.3 2.5E+02 0.0086 25.8 9.6 48 131-178 171-218 (228)
264 3hhm_B NISH2 P85alpha; PI3KCA, 33.3 1.9E+02 0.0066 27.9 9.4 15 133-147 170-184 (373)
265 3c3g_A Alpha/beta peptide with 33.1 82 0.0028 21.3 4.7 25 134-158 3-27 (33)
266 1gmj_A ATPase inhibitor; coile 33.0 1.9E+02 0.0064 23.1 9.5 23 150-172 49-71 (84)
267 3c9i_A Tail needle protein GP2 32.9 2.7E+02 0.0091 25.9 9.6 47 148-194 80-126 (242)
268 1uo4_A General control protein 32.9 75 0.0026 21.6 4.5 20 157-176 6-25 (34)
269 2q6q_A Spindle POLE BODY compo 32.7 1.8E+02 0.006 22.7 8.4 46 148-193 6-58 (74)
270 2nps_D Syntaxin-6; vesicle fus 32.5 1.6E+02 0.0055 22.3 7.0 57 133-189 14-70 (82)
271 3he4_A Synzip6; heterodimeric 32.4 14 0.00046 27.2 0.8 47 147-193 5-51 (56)
272 1deb_A APC protein, adenomatou 32.1 1.2E+02 0.0042 22.4 5.9 20 170-189 21-40 (54)
273 4b4t_K 26S protease regulatory 32.0 70 0.0024 31.4 6.1 19 167-185 71-89 (428)
274 3he5_A Synzip1; heterodimeric 31.3 1.4E+02 0.0049 21.3 7.4 39 154-192 5-43 (49)
275 2pms_C Pneumococcal surface pr 31.2 1.2E+02 0.0041 25.8 6.6 31 136-166 59-89 (125)
276 2c5k_T Syntaxin TLG1, T-snare 31.2 84 0.0029 25.0 5.4 25 132-156 37-61 (95)
277 2ke4_A CDC42-interacting prote 31.0 2.1E+02 0.007 23.0 9.3 30 128-157 12-41 (98)
278 1f5n_A Interferon-induced guan 30.4 3.6E+02 0.012 27.5 11.2 13 210-222 544-556 (592)
279 4dci_A Uncharacterized protein 29.7 2.4E+02 0.0082 24.4 8.4 30 146-175 30-59 (150)
280 1lq7_A Alpha3W; three helix bu 29.7 85 0.0029 23.6 4.8 56 134-189 5-64 (67)
281 4evy_A Aminoglycoside N(6')-ac 29.5 21 0.00071 27.6 1.5 28 268-295 16-43 (166)
282 3c3f_A Alpha/beta peptide with 29.4 1E+02 0.0035 21.0 4.7 25 134-158 4-28 (34)
283 3iv1_A Tumor susceptibility ge 28.6 2.1E+02 0.0073 22.4 10.1 49 144-192 10-58 (78)
284 3t97_C Nuclear pore glycoprote 28.4 48 0.0017 25.0 3.3 24 132-155 13-36 (64)
285 2dq3_A Seryl-tRNA synthetase; 28.2 1.1E+02 0.0038 29.8 6.8 62 131-192 30-94 (425)
286 3bbp_D GRIP and coiled-coil do 28.1 36 0.0012 26.5 2.6 49 147-195 17-65 (71)
287 1deb_A APC protein, adenomatou 28.0 1.8E+02 0.0063 21.4 7.3 36 149-184 14-49 (54)
288 1l4a_A Synaptobrevin; snare, s 28.0 70 0.0024 24.4 4.3 44 129-172 13-56 (80)
289 3jsv_C NF-kappa-B essential mo 27.5 1E+02 0.0035 25.1 5.3 62 133-194 11-89 (94)
290 1xaw_A Occludin; coiled-coil, 27.4 1.6E+02 0.0055 25.4 6.8 24 133-156 61-84 (140)
291 3rrk_A V-type ATPase 116 kDa s 27.1 1.5E+02 0.005 27.3 7.1 32 150-181 97-128 (357)
292 1uo4_A General control protein 27.1 90 0.0031 21.3 4.1 23 135-157 5-27 (34)
293 2aze_B Transcription factor E2 27.0 1.2E+02 0.0041 24.6 5.7 35 152-186 6-40 (106)
294 3zbh_A ESXA; unknown function, 26.9 1.8E+02 0.0063 21.1 9.5 38 121-158 6-43 (99)
295 3hhm_B NISH2 P85alpha; PI3KCA, 26.8 3.3E+02 0.011 26.3 9.8 30 156-185 202-231 (373)
296 2l5g_B Putative uncharacterize 26.6 1.6E+02 0.0056 20.8 5.5 20 153-172 10-29 (42)
297 2hy6_A General control protein 26.5 1.1E+02 0.0037 20.8 4.4 14 161-174 10-23 (34)
298 4dzn_A Coiled-coil peptide CC- 26.4 1.4E+02 0.0048 19.8 4.8 14 150-163 7-20 (33)
299 2oqq_A Transcription factor HY 26.4 1.2E+02 0.0042 21.5 4.8 19 168-186 12-30 (42)
300 3swy_A Cyclic nucleotide-gated 26.3 1.8E+02 0.0061 20.8 7.0 42 144-188 4-45 (46)
301 2k48_A Nucleoprotein; viral pr 26.1 2.8E+02 0.0097 23.0 9.5 64 142-218 32-100 (107)
302 1m1j_A Fibrinogen alpha subuni 25.8 3.8E+02 0.013 27.5 10.1 69 149-217 115-187 (491)
303 2lw1_A ABC transporter ATP-bin 25.6 2.3E+02 0.0077 21.7 8.2 52 132-183 23-80 (89)
304 2zvf_A Alanyl-tRNA synthetase; 25.6 96 0.0033 25.6 5.1 9 208-216 83-91 (171)
305 2f1m_A Acriflavine resistance 25.4 3.3E+02 0.011 23.6 9.3 28 136-163 58-85 (277)
306 3m48_A General control protein 25.1 1.2E+02 0.004 20.6 4.3 23 164-186 5-27 (33)
307 4ati_A MITF, microphthalmia-as 25.0 59 0.002 26.6 3.6 49 137-189 66-114 (118)
308 1fzc_C Fibrin; blood coagulati 24.8 40 0.0014 32.3 2.8 34 156-189 8-41 (319)
309 3fpp_A Macrolide-specific effl 24.5 2.6E+02 0.0088 25.0 8.0 32 135-166 66-97 (341)
310 3gpv_A Transcriptional regulat 24.5 2.1E+02 0.0072 23.6 7.0 30 164-193 100-129 (148)
311 3a2a_A Voltage-gated hydrogen 24.4 1.4E+02 0.005 22.3 5.2 24 165-188 17-40 (58)
312 3rrk_A V-type ATPase 116 kDa s 24.2 3.1E+02 0.011 25.1 8.7 33 128-160 223-255 (357)
313 4ath_A MITF, microphthalmia-as 24.1 2.7E+02 0.0092 22.0 7.4 47 139-189 33-79 (83)
314 2hy6_A General control protein 23.7 1.2E+02 0.0042 20.6 4.2 25 134-158 4-28 (34)
315 3ghg_C Fibrinogen gamma chain; 23.7 4.2E+02 0.014 26.3 10.0 64 130-193 37-125 (411)
316 3twe_A Alpha4H; unknown functi 23.7 1.1E+02 0.0038 19.5 3.8 17 156-172 5-21 (27)
317 1lwu_B Fibrinogen beta chain; 23.7 98 0.0033 29.6 5.3 23 167-189 36-58 (323)
318 2e7s_A RAB guanine nucleotide 23.7 81 0.0028 27.1 4.3 35 130-164 45-79 (135)
319 1j1d_B Troponin T, TNT; THIN f 23.5 1.1E+02 0.0039 25.0 5.0 45 151-198 44-88 (106)
320 2l5g_B Putative uncharacterize 23.4 1.7E+02 0.0059 20.7 5.2 29 135-163 6-34 (42)
321 2i1j_A Moesin; FERM, coiled-co 23.1 66 0.0023 32.7 4.2 11 322-332 500-510 (575)
322 2f1m_A Acriflavine resistance 23.1 3.7E+02 0.013 23.3 9.4 27 131-157 60-86 (277)
323 1n7s_D SNAP-25A; neuronal snar 22.9 2.2E+02 0.0074 20.5 9.7 56 134-189 6-61 (66)
324 3m0a_A TNF receptor-associated 22.7 2.2E+02 0.0074 20.5 9.6 52 133-184 7-58 (66)
325 2wq1_A General control protein 22.5 1.6E+02 0.0056 19.9 4.7 22 157-178 5-26 (33)
326 3viq_A SWI5-dependent recombin 22.4 1.6E+02 0.0055 24.5 5.8 24 166-189 7-30 (122)
327 3ra3_B P2F; coiled coil domain 22.3 97 0.0033 20.0 3.3 21 172-192 6-26 (28)
328 2e7s_A RAB guanine nucleotide 22.2 2.2E+02 0.0075 24.4 6.7 14 153-166 40-53 (135)
329 2bni_A General control protein 22.2 1.5E+02 0.0052 20.1 4.5 23 156-178 5-27 (34)
330 3uux_B Mitochondrial division 22.2 4.9E+02 0.017 24.3 10.1 48 146-193 178-225 (242)
331 2xv5_A Lamin-A/C; structural p 22.1 2.7E+02 0.0091 21.3 8.9 47 139-185 6-52 (74)
332 3hh0_A Transcriptional regulat 21.7 2E+02 0.0068 23.8 6.2 50 164-219 85-135 (146)
333 2ve7_C Kinetochore protein NUF 21.6 38 0.0013 31.1 1.9 6 130-135 119-124 (250)
334 1lwu_B Fibrinogen beta chain; 21.6 95 0.0032 29.7 4.7 21 169-189 31-51 (323)
335 1gk7_A Vimentin; intermediate 21.5 1.3E+02 0.0046 20.5 4.2 31 146-176 7-37 (39)
336 2oxj_A Hybrid alpha/beta pepti 21.3 1.6E+02 0.0056 20.0 4.5 24 164-187 6-29 (34)
337 2zdi_C Prefoldin subunit alpha 21.2 2E+02 0.0068 23.8 6.2 34 130-163 97-130 (151)
338 2zdi_C Prefoldin subunit alpha 21.2 2.5E+02 0.0087 23.1 6.8 43 136-178 96-138 (151)
339 3d5a_X RF1, peptide chain rele 21.1 4.1E+02 0.014 25.9 9.2 22 169-190 72-93 (354)
340 2p22_C Protein SRN2; endosome, 21.0 4.4E+02 0.015 23.3 10.7 12 217-228 130-141 (192)
341 3ljc_A ATP-dependent protease 20.9 3.1E+02 0.011 24.1 7.8 58 131-190 185-249 (252)
342 1lrz_A FEMA, factor essential 20.8 2.2E+02 0.0076 27.0 7.1 17 148-164 250-266 (426)
343 4b6x_A AVRRPS4, avirulence pro 20.8 3.3E+02 0.011 21.9 7.8 40 133-172 38-82 (90)
344 4ani_A Protein GRPE; chaperone 20.8 2.8E+02 0.0095 25.1 7.4 46 147-192 61-106 (213)
345 1fzc_B Fibrin; blood coagulati 20.7 48 0.0016 31.8 2.5 55 133-189 6-60 (328)
346 3n7n_E Monopolin complex subun 20.6 21 0.00072 29.2 0.0 17 208-224 71-88 (95)
347 4aj5_A SKA1, spindle and kinet 20.5 1.5E+02 0.0053 24.0 5.0 41 154-194 39-79 (91)
348 3w03_C DNA repair protein XRCC 20.2 2E+02 0.0067 25.8 6.2 41 134-174 141-181 (184)
349 4b4t_J 26S protease regulatory 20.2 1.6E+02 0.0055 28.8 6.2 26 169-194 42-67 (405)
No 1
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.35 E-value=0.1 Score=44.65 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+-+++++++..+..+.++..++..|+.++..++..++++++++.+|+.++..++.++..|.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555444
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.34 E-value=0.12 Score=44.26 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCcccCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 121 PGKIEDGLMDK--KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 121 ~~~~~~~~~~~--~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
..+|.|+...- ++.+|+..++..++-+.+|+.++..++.+++.+...+++|++++..|+.++..++.++.
T Consensus 63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556654433 37788888888888888888888888888888888888888888888888888887763
No 3
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.28 E-value=0.15 Score=40.69 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+|++|++.+=..|.-||.++..|+.+...+.+.++++......|..+..+++.+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 567888888888888888888888888877777777775554444444555444444
No 4
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.42 Score=42.04 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+.+.|++....+..++.|+.+|+-++..+.+....|+.||.+|-..+
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444433
No 5
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.63 E-value=0.6 Score=36.86 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
...++++.+.|+-.+...++|+.+...|..|...|..+..+++.....|..+-..++.++..|.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888999999999998888888887777777777777777777777776654
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.22 E-value=0.82 Score=41.30 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVK----DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 133 ~kel~EKLEesE~Lik----eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
+..+++.|++-+.... +|+.+|.++.+.+..++.++..|..|...++.++....
T Consensus 26 ~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 26 FQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655444444 33444445555555555555555555444444444333
No 7
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.99 Score=35.36 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
++-|+|..+|.+.++.|..|.-=+-+|+.+|.++-+.|..||.++..++.....++.+...
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 4678999999999999999999999999999999999999999999888888888877643
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.88 E-value=1.2 Score=39.79 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+++.+|+..+.+|..|+..++.....++.+++.|+..+..++.++.++.
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556777777777777777777777777777777777777777765555
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.28 E-value=2.8 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|+.++..+..++..+.++...+.............+++++.+|.
T Consensus 48 sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 48 GLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444555555554
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.17 E-value=1.9 Score=34.36 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+.=|+.+=..|.-|+.|++.+++.|..|..++.++++.-+.+..++..|+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333444444455555667777777777777777777777777777776666
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.09 E-value=2.7 Score=33.86 Aligned_cols=7 Identities=57% Similarity=0.838 Sum_probs=2.6
Q ss_pred HHHHhhc
Q 019419 186 EAKIASL 192 (341)
Q Consensus 186 EaEI~sL 192 (341)
++++.+|
T Consensus 85 E~ev~~L 91 (101)
T 3u1c_A 85 ESEVASL 91 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 12
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.86 E-value=2.3 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
++..|..+|...|+.....+.++..|+.++.++.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666655555555533
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.59 E-value=1.7 Score=42.42 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFA------------------LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~A------------------LkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
.+..+++++...+...+.++.++.. +.+++...+++.+.++.++..+++++.....++..
T Consensus 464 ~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 464 EVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 3555555555555555555555532 33344445555555555555555555444444433
No 14
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.02 E-value=1.8 Score=41.51 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKA 164 (341)
Q Consensus 149 eLQsEL~ALkkELekL 164 (341)
.||.+|..+++.+.++
T Consensus 401 ~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHH
Confidence 3555555555544443
No 15
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=88.90 E-value=4.7 Score=31.86 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
++..|+..+.......-+|+++|..|+.|+..|+.+++++.-++..|.++-......+..
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444434444445567888888888888888888888888888887777777766643
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.87 E-value=0.39 Score=35.18 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
.++++|+.|+..++.+++.|..++.+|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777777777777777664
No 17
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.84 E-value=2.5 Score=30.36 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++..|++++.+|..|.+-++..|---..-+.+|..+++.+..+|
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888877776666444445556666665555444
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.32 E-value=3.2 Score=37.63 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
++++..+|+..+..+..++.++..++.++..+......++.+...++.++...+.++.+.
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444444444455555555555555555555555555555555555555555555443
No 19
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.92 E-value=5 Score=28.73 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
..++..+++.++.....+..++.++..+...+.++.+..+....++.+++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888887777777777777777776666666666666666655543
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.88 E-value=1.7 Score=44.74 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHHhhhhhhhhhhhhccCCCCC
Q 019419 170 ELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINT 237 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~KLe~s~~~~~a~~~~s~~~ 237 (341)
+|++.+.+|+.+|..--..|..|+++=. + |..--+|||.-++.+--.+..+|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLe-------------d-q~~kIQRLEvDIdiqirsCKgsCsr 167 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVR-------------A-QLVDMKRLEVDIDIKIRSCRGSCSR 167 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHHGGGTBSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHhccccccc
Confidence 6677777777777655577777775322 2 3333467888888777777777655
No 21
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.79 E-value=4.8 Score=31.36 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
++.++|+..+.-..+|+.+|..|+..++..+...+.++.|.+.+.+.|+-+=-++..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 466788888888888888888888888888888888888877777777665555433
No 22
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.32 E-value=2.2 Score=31.93 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
-+-......+..+..|..++..|...|..|+.++..|+++|
T Consensus 20 AArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 20 AARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555666666666566666666655555554
No 23
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.94 E-value=5.1 Score=32.00 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+||.-|+.-=.-++-++-||...+..+-.++.+..+.+..|.+|..++.+++.++..|+
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666665544555556666666666666666667777777777777877777776655
No 24
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.89 E-value=7.5 Score=29.11 Aligned_cols=64 Identities=5% Similarity=0.108 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSEN-LVKD----LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~-Like----LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+-+.++..+|+..-. ...+ ++.++..|........+.....+.|+.+|+.++..++.+|.+|+
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4557788877774433 3333 35666666666666555555566799999999999999998775
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.75 E-value=4.9 Score=33.35 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ 155 (341)
.++|+++.......+++|+.+|.
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 26
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=86.71 E-value=3.2 Score=36.34 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.+...+.+|+|+++.++..+-+.++++|++-....+.....|..|+.-++..++.+...+
T Consensus 24 ~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 24 QKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445777888888888888888888888887766667677777777766676666666554
No 27
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.67 E-value=2.9 Score=32.71 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 166 SLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 166 erNeELEkENkELqqQLa~aEaEI~ 190 (341)
++.++|+++..+....+..+..+|.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.66 E-value=7.5 Score=29.85 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSEN 145 (341)
Q Consensus 132 ~~kel~EKLEesE~ 145 (341)
+++-|+..++....
T Consensus 7 Km~~lk~e~d~a~~ 20 (81)
T 1ic2_A 7 KMQMLKLDKENALD 20 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334433333333
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=86.45 E-value=10 Score=29.81 Aligned_cols=58 Identities=3% Similarity=0.053 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
..+++.+++.+++++..+..+.=.++..=.+.|+.+.++.+.|..+-...+.+-.++.
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998888777777777777777777777766555544443333
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.43 E-value=2.4 Score=46.33 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAE 170 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeE 170 (341)
++++..|.+|+..+.+..+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.30 E-value=8.6 Score=30.69 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+..-..+..++..|...|..|+.++..|..++..+..-+.++++
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 44444455555556666666666666666666666666655554
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.25 E-value=4.3 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.++..|..++..+...|.+|+.++..|+.++..+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.24 E-value=1.3 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.+.+|+.++..|..+. ..|..||..|+.++..+..++
T Consensus 30 ~i~~LE~~v~~le~~~-------~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 30 HLKALETQVVTLKELH-------SSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444433 334444444444444444443
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.24 E-value=3.5 Score=39.62 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++..++.+.+.|+.+...+.+.+....+++++.+.++.+++++.++..+++.+.++.-.+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 4444444445555555555666666667777777777777777777777777777664444
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.08 E-value=5.8 Score=35.75 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
.+|+..|+..++-..+|++++..|..|+..|+..+....
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777778888888888777777766555543
No 36
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=85.88 E-value=1.8 Score=39.25 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
+..+++.|+....++..|++|...|..++....+.+..|+++...|
T Consensus 8 K~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556999999999999999988887776664444444443333333
No 37
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=85.83 E-value=3.2 Score=32.62 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 126 ~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
||--.+.++-|++.|...+..|..|+-.+.-..+..+.|.+..-.|.-||.-|+++|..+++
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 33445579999999999999999998877777777777666666666688888888876554
No 38
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.81 E-value=1.6 Score=42.65 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
++..++++++..++.+.+|+.++..++.++..+.++..+.+.+.++|..++..++..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 466788888888888889999999998888888888888888888888888877764
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.69 E-value=2.7 Score=30.76 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 163 KAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 163 kLqerNeELEkENkELqqQLa~a 185 (341)
.+...|..|+.++..|+.++..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.04 E-value=8.9 Score=29.41 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++++..+....+.+.....+..++..++.++..||.+......+|.
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=85.00 E-value=2.5 Score=32.92 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=25.9
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 124 ~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+.|+.....+.+|+++|..-+..+.+|...|.....++..++
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777766666665555555444433
No 42
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.85 E-value=5.6 Score=31.80 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+..|.-++.++++.+..++-+|.+=+.|+..++.+.+.-+.+.+.|+.+|
T Consensus 28 i~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55556666666666666666666666666666666665555655555554
No 43
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=84.68 E-value=4.9 Score=33.32 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 157 LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|+..++...+.+.++.+|+.+...++...+..+..|+
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~ 71 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444333
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.28 E-value=4.6 Score=34.33 Aligned_cols=42 Identities=31% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
+|.+|..+-+.+..+|+.|++.|.++|..+.+++..|...+.
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 455555555667899999999999999999999988875443
No 45
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.08 E-value=9.6 Score=31.77 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKD 149 (341)
Q Consensus 130 ~~~~kel~EKLEesE~Like 149 (341)
.|+.++|+.+..-....+.+
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~ 21 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEA 21 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34555555555544433333
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.06 E-value=8.5 Score=32.24 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
+.+..+.+|+..|.+|..||...+........||..|+.+++.+
T Consensus 37 E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666665555555555666666666544
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.06 E-value=11 Score=30.19 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++.+...+..|+..|+.++..|+.+...++.+|..+
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444333333
No 48
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.68 E-value=5.3 Score=31.56 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
..++.++|+..+.-..+|+.+|..|+..++..+..-+.++.|.+.+.+.|+-+=-+++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44566778888887888888888888888888877788887877777777665544433
No 49
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.68 E-value=4.6 Score=29.51 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+..|..++..+..+|..|..-.++.+.+|..+.+++..|.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677777777888888877777888888777776553
No 50
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=82.58 E-value=4 Score=40.09 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
+.+--.|+++|++..+.+.+|+.++.++..|+..+.++..+.+.+.++|..++..++..
T Consensus 2 ~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456788889988888899999999998888888888877777888888888777654
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.21 E-value=5.2 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.|..++..|...|..|..+...|+.++..+.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 52
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.46 E-value=1.7 Score=33.39 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
+-|..+-++|..|+.++..|..|+..+..++..|+.+
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777666655555544444443
No 53
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.41 E-value=6.9 Score=42.81 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
+..++.+.+|+.+++.|++++.++....+.||.
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555554444444443
No 54
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=81.39 E-value=9.1 Score=39.36 Aligned_cols=76 Identities=28% Similarity=0.253 Sum_probs=49.0
Q ss_pred cccCCCCcccCCchhHHHHHHH--------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 116 IVDANPGKIEDGLMDKKKKEFE--------E-------KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~kel~--------E-------KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
--+-||++.+|-+.+|++-+-+ + +|-..++-++.+++.+.++..|.....+....++++...++.
T Consensus 326 ~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n 405 (602)
T 1cii_A 326 LNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRN 405 (602)
T ss_dssp SCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888754333 2 333445555666666777777777666666666667677766
Q ss_pred HHHHHHHHHhh
Q 019419 181 DLVAAEAKIAS 191 (341)
Q Consensus 181 QLa~aEaEI~s 191 (341)
++...++++..
T Consensus 406 ~~a~~~~KiAE 416 (602)
T 1cii_A 406 QLSGINQKIAE 416 (602)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhhhhhHHHH
Confidence 66666555533
No 55
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=81.26 E-value=4.2 Score=39.14 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
-++.++|.+++...|.++...+.+|..|+..+. .++..+.+|+++|..++..|
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWR-------VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666666666655544 44555555666666666655
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.86 E-value=2 Score=31.57 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+....+.|+.+|..|..++..+..++..|.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555444
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.81 E-value=13 Score=30.82 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
...++++.++|+-.+...++|+.+...|..|...++
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~ 54 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888888888888888888777776666655543
No 58
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=80.60 E-value=1.2 Score=41.99 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~ 197 (341)
.+..|..++..+..+|+.|..+.++++.++..++.++..|..-..
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 577788888888888888888888888899998888877776444
No 59
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.56 E-value=13 Score=29.00 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++|++++...+.-..+-+.+=.+++.|+..+.+..+.=-.|..+|++.|+.+
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4455555555555555566666667777777777666666777888877764
No 60
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.55 E-value=21 Score=29.17 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
+.+..+.++|...+.-..+...++..|..++..-+.+-...|.++..+.++|..+-+.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555554444445555555555555444443
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.51 E-value=9.8 Score=32.35 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
..|+.+..+-.+.+..++..+..|..+.++...+++++..+...|
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 344443333333344444444444444444444444444444333
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.42 E-value=12 Score=31.10 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 134 KEFEEKLMLSE----NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 134 kel~EKLEesE----~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..+.+||+.+. ..+..||.+|..|......++....+||..|.+|..+-.....-+..|.
T Consensus 20 e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 20 EALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 34445555443 3456677777777766666666666666666666655554444443333
No 63
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.35 E-value=20 Score=28.59 Aligned_cols=53 Identities=4% Similarity=0.099 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
..+++.+++.+|+++..+..+.=.+|..=-..|+.|.++.+.|..+-..++.+
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~ 80 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 80 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999988887777777677777777777776665444433
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.35 E-value=8.4 Score=34.85 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.-+.+|+.++..++..+..+.....+++.+...+..++......+...+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555555555555554444
No 65
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.26 E-value=13 Score=30.47 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkEL 161 (341)
|.+|+.+|+.....+..|+.++..++..+
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444444433333
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.22 E-value=14 Score=30.40 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhcc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEK-----------QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEk-----------ENkELqqQLa~aEaEI~sL~ 193 (341)
+..+.+|+..|..|..|+..++.++..||. +...++..+..++.++..++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444444444444444444444444443 33455555566666665554
No 67
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.77 E-value=6.1 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkEL 178 (341)
++..|..+...|..+...|+.|+.+|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 68
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.75 E-value=16 Score=26.89 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI 189 (341)
+....+.|+.+|..|..++..+..++
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.71 E-value=14 Score=32.39 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..+..+..|+.+|..|..++......++.|..|+.-|+-++..++.++..|+.
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555566666666666666666655553
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.64 E-value=4.9 Score=41.51 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc---cccchhccccccCCchhhHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA-SL---SSREQREAVGEYQSPKFKDVQKLI 216 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~-sL---~~~~~~~~~~e~q~~~~kdiqkl~ 216 (341)
+|+..+..|+.+|.....+..-|+.-+.++..+++++|-.|. +| +..=.+-...+-...-+++|||.|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 667777777777776556666666666666666666665542 11 221122222222244577788733
No 71
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.38 E-value=14 Score=32.33 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKD--------------LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~Like--------------LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..++.+|++.|..+.+-++. ++.+|..|...+...-.+.+..++....|+..++.++.++
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665554432 3444444444444444455544555555555555555554
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=79.17 E-value=13 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
+....++.++|.....+|.+|+.|...|+.++..+
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666543
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.82 E-value=12 Score=31.00 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk----ENkELqqQLa~aEaEI~sL~ 193 (341)
+++-+....+..|+.+|.+++.....|.....+++. +...++..+..++.++..++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443333333333333332 34455555555666665554
No 74
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=78.78 E-value=15 Score=29.05 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++|++++...+.-..+-+.+=.+++.|+..+.+..+.=--|..+|++.|+.+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3444445555554455555555566777777766666666777888877764
No 75
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.68 E-value=16 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 166 SLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 166 erNeELEkENkELqqQLa~aEaEI~s 191 (341)
...+.|+.+|..|..++..+..++..
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.15 E-value=11 Score=33.43 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALk 158 (341)
+++...++.+..|+.++..|+
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433
No 77
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=77.47 E-value=18 Score=31.95 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ-------SLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLq-------erNeELEkENkELqqQLa~aEaE 188 (341)
.+.+.+++++=.+....-..+|+.++.+++.|+..+. ...+.|.+|..+|+.++.....+
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445566666677766666654 34455555666666666544433
No 78
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.45 E-value=17 Score=25.90 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.+...+....++..++..+..++..+....+.+..+....+..+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555555544
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=77.28 E-value=5.1 Score=30.81 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENk 176 (341)
..+++|+.++...+.....|. .|...|..++..|..|+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~-------~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTT-------LENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 347777777766665555544 444444444444544443
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=77.14 E-value=24 Score=27.57 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 145 ~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.-+..++..+.........+...+..|..+...|..+++-++..|..|..
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~ 70 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333444444444444445556666777767777666666666665554
No 81
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.13 E-value=5.4 Score=31.33 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
.=|..+-++|.+|+.+...+..++..+..+|..|..+..+|
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677888888888888777776666666666655544
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.72 E-value=6.3 Score=38.44 Aligned_cols=14 Identities=21% Similarity=-0.073 Sum_probs=6.2
Q ss_pred hHHHHHHHHHhhhh
Q 019419 285 PSFAQLYHSLTKQV 298 (341)
Q Consensus 285 PevVEfY~sL~kr~ 298 (341)
...-|+++-|.+-.
T Consensus 243 ~s~~e~~~ll~~g~ 256 (403)
T 4etp_A 243 ESEEMVEIILKKAN 256 (403)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHH
Confidence 33445555444433
No 83
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.10 E-value=8.9 Score=29.82 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
.+++.|...|.-+...+.-|..|+..+...+...+.|+.+...|.+++..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444455555444444444433
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=75.79 E-value=21 Score=29.20 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|+++|.+-..||..++...+.++.++..+..++..+..+-..|.
T Consensus 58 ~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 58 SLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555566666666655555544443
No 85
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.65 E-value=8 Score=32.08 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
.-|.-+|++.++...+++.++..+..+++.++.....|..+..+|+.+
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333333333
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.09 E-value=10 Score=46.31 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 128 LMDKKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~Lik-------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+...+..+++++|+.+++... +++.+|..|+.+.+.+....+.|+.+....+.+|.+++.=|.+|.+
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334445555555555554444 4444444444444444445555555666666667777777777764
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.06 E-value=12 Score=26.57 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
...+|+.+...|......|.++...|+.||.=|++-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4556777777776666667777777777777777654
No 88
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.61 E-value=22 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 167 LNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 167 rNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+...|+.||..|+.++..++.++..|
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 89
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.57 E-value=9.5 Score=29.78 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 167 LNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 167 rNeELEkENkELqqQLa~a 185 (341)
+..+.+.++.+|+.+|...
T Consensus 48 ~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 48 ELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555443
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.21 E-value=11 Score=46.01 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
++..++.++...+++.++++.+..+++.+|+.++++
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 91
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.42 E-value=22 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
+..++.|.+.|..-...+.+-+.+...+..|++.
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777766655555555555555555544
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.20 E-value=8 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.|..++..+...|..|..+...|+.++..+.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 93
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.08 E-value=32 Score=26.97 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELe 162 (341)
.+.++.++|....+.+.++++++..+...+.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544443
No 94
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=72.90 E-value=39 Score=29.57 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAE-------FVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkE-------LekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+..+-.|++-++...+...+.+-+|.-.-+= +.+++.+|.--++|+..|+.++..+.+.+
T Consensus 10 ~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 10 EDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 5567788877777766666666665533332 33444455444455555555554444433
No 95
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.48 E-value=16 Score=28.78 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.|+..+.+...-+..++.+++.|+.|+..|+++++...-++..|..
T Consensus 10 ~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 10 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444445567778888888888888888888888866663
No 96
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.27 E-value=11 Score=41.17 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekL 164 (341)
++.+++++|+..+..+.+++.++..|..++..+
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666656556555555555555444433
No 97
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.78 E-value=30 Score=27.61 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALk 158 (341)
..++.+|+..+.--..|..+|..|.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lE 31 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVE 31 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333333
No 98
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.69 E-value=31 Score=29.09 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
..+|.++++........+..+...|..++..+...|+.|+..++++..+++.+
T Consensus 31 N~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 31 NKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444445555555555555666666665555555555433
No 99
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.57 E-value=21 Score=36.09 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
+++.+|-++....+....+|+.+..++.+++.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 100
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.27 E-value=24 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+..|..+|...++.....+.+|..|+.++.++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455666666666655555555555555544433
No 101
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.03 E-value=39 Score=34.47 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHHHHHHhhhhhhhhhhhhccCCCCC
Q 019419 163 KAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINT 237 (341)
Q Consensus 163 kLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~a~KLe~s~~~~~a~~~~s~~~ 237 (341)
.+.+-.++||+.+.+|+..+..--..|..|+++=. + |..--+|||..++.+-..+..+|..
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~-------------~-q~skIQRLE~dI~~q~~~Cr~pC~r 168 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQ-------------E-QVVEMKRLEVDIDIKIRACKGSCAR 168 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHTTTTTBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHHHhcchhhh
Confidence 35555567777778888887644477777775322 2 3333457787777666666666554
No 102
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=70.27 E-value=9.1 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
.=|..+-++|..|+.+...+..|...++.++..|..+
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888877777765555555555443
No 103
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.02 E-value=44 Score=27.37 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK---------------------AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELek---------------------LqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+..+.++++..+..+..|+.++..|..+|.. ...-.+..+.+..+|+.+++.+...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666655 11112234455556666666666666
Q ss_pred hhccc
Q 019419 190 ASLSS 194 (341)
Q Consensus 190 ~sL~~ 194 (341)
..|..
T Consensus 92 ~~lEe 96 (100)
T 1go4_E 92 RAMER 96 (100)
T ss_dssp TTCC-
T ss_pred HHHhc
Confidence 55543
No 104
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=69.77 E-value=13 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAE 160 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkE 160 (341)
+++.+|.+.++.+|.+..+|+..+.+.+.+
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444
No 105
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=69.26 E-value=9.6 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 162 ekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..++.+.++||+...-|..+|+.+.+.+.+|+
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~aLp 43 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHALP 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44666788888888888888888888887664
No 106
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.97 E-value=8.4 Score=29.38 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 161 LekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+..|+.++..|+.+..+|+.+...++.++.+|++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456666677777777777777777777766653
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.48 E-value=35 Score=33.97 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 165 QSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 165 qerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+-.++||..+.+|+..+..--..|..|+.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445666666666666543335555553
No 108
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=68.38 E-value=9.8 Score=30.46 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAE-FVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkE-LekLqerNeELEkENkELqqQLa~ 184 (341)
...+.+++..|+++++++..++-|+-.+-.. -..++.+......+...|+.++..
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999998888766421 123334444444454445444444
No 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.24 E-value=15 Score=40.09 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
.+++++++|+..+.-...++.++..+..++..+..+.+.++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544444444444444444444444444444433
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.38 E-value=9.8 Score=29.73 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
....-+.....+..++..|...|..|+.++..|..++..+..-+.+++
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333445555566666677777777788777788888877776655443
No 111
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.07 E-value=19 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
++.|.+.|......+...+.+...+..||+.
T Consensus 28 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 28 VKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=66.64 E-value=41 Score=26.64 Aligned_cols=9 Identities=33% Similarity=0.084 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019419 147 VKDLQSEVF 155 (341)
Q Consensus 147 ikeLQsEL~ 155 (341)
...|+.++.
T Consensus 32 N~~Le~~i~ 40 (93)
T 3s4r_A 32 NKILLAELE 40 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 113
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.60 E-value=52 Score=26.94 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALK----AEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALk----kELekLqerNeELEkENkELqqQLa 183 (341)
++.|+-+|+...+.+..|+..|.... .++..++.....||.+...++.+++
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444555555555555555554333 2233334444444444444444443
No 114
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=66.17 E-value=14 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
..+.+++..|+++++++..++-|+-.+-
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3488888899999999988888877664
No 115
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.12 E-value=54 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
.++..+.+|+..|..|..|+..++.++..||....++..
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444555555555555555555555544444433
No 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.10 E-value=19 Score=36.34 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer---NeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+++-+|-++....+....+|+.+..++.+++.+++.. .++|..+.++|..++..++.++..+.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444555555555555555443321 23344455555555555555554333
No 117
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=66.02 E-value=33 Score=27.12 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFAL--KA-EFVKAQSLNAELEKQNKK-LVEDLVAA 185 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~AL--kk-ELekLqerNeELEkENkE-LqqQLa~a 185 (341)
..+.+++..|+++++++..++.|+-.+ .. .-..++.+......+... |+.+|..+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348899999999999999999999888 42 223444455555555555 55555443
No 118
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=65.80 E-value=19 Score=35.67 Aligned_cols=23 Identities=4% Similarity=-0.100 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ 155 (341)
.++++.+++..+...+.+..+|.
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 119
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=65.65 E-value=13 Score=32.41 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 133 KKEFEEKLMLSENLV-----KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 133 ~kel~EKLEesE~Li-----keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+++|.++..+++... +-|++.+..|...+...+.-...++.+..+|+.++..++++...|.
T Consensus 42 ~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 42 EKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555666555 1222222333333443333444444444444444444444444443
No 120
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=65.55 E-value=35 Score=27.23 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
++|+..+..+.+|-.+.......-..|..-|+.+|...+++|..|.
T Consensus 29 ~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 29 RHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556666666666555554444445666777777777777765554
No 121
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=65.17 E-value=22 Score=25.39 Aligned_cols=43 Identities=35% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|++++.+|++|= =.-+...-||.|.+-|..+|+.++.++..|+
T Consensus 5 lkselqalkkeg-fspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 5 LKSELQALKKEG-FSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555554321 1122344556666666666666666654443
No 122
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=65.10 E-value=46 Score=28.98 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
..+|+.|.++|++++.--.+-+..+.-|.+++..+-+....-...++.+...|+..-.++.+
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888777654444444444444444444444443344444444455544444433
No 123
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=64.75 E-value=7.1 Score=32.64 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.-++++.+...++...|......+-..++++++.+.+|++++.+|+.++...+
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433345666677777778888888888888877654
No 124
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.60 E-value=36 Score=27.36 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019419 143 SENLVKDLQSEVFALK 158 (341)
Q Consensus 143 sE~LikeLQsEL~ALk 158 (341)
.......|+|...|..
T Consensus 26 lKq~RRtlKNRgyAq~ 41 (90)
T 2wt7_B 26 LKQKRRTLKNRGYAQS 41 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHH
Confidence 3333344444444433
No 125
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.42 E-value=27 Score=27.33 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
...+..||+.--++....++++..|++.+..+--.-.+||.+..-|+.++
T Consensus 30 ~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 30 IMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666655543333334444433333333
No 126
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=63.11 E-value=44 Score=26.21 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
+.++|+++-.++...-||.+++.|-.|...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s 32 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES 32 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888877766554
No 127
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=63.00 E-value=31 Score=24.70 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
+++|+++-.++...-||.+++.|-.|.+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777776655544
No 128
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=62.99 E-value=40 Score=34.03 Aligned_cols=17 Identities=0% Similarity=0.147 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENL 146 (341)
Q Consensus 130 ~~~~kel~EKLEesE~L 146 (341)
++.+++|+..|+..++.
T Consensus 99 ~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhh
Confidence 44466666666666553
No 129
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=62.26 E-value=19 Score=32.32 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
+...+++..+=..+..|+.++..+++.|+.|..|..+..++++
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777777777777777777777777777777666664
No 130
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.14 E-value=18 Score=26.33 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
+++.++..|++|+.++..|..+++.++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 131
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.93 E-value=27 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++.++..+..++..+..+...|+.+...|..++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443333
No 132
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.68 E-value=14 Score=28.33 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
-....++.+.|...+..+.+|+..|...+.|+..|+.+.+.+.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777888888777777777666665555443
No 133
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=61.34 E-value=18 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+...|..+...++.+.+.|..|+..+..+++..+.++..|.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555666666666666666665553
No 134
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=61.00 E-value=32 Score=26.21 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+-|.+-...+.+++.-|..|-.|.+-|+.++..+..+-+.|.
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 344455556666666667776676666666666666655443
No 135
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.83 E-value=58 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 019419 130 DKKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (341)
Q Consensus 130 ~~~~kel~EKLEesE~Lik-------eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~ 196 (341)
+.++..|+.+|+++..+-. +...+|.-+..+|...-++.+..+..+.+|..+|...-..+.+|....
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3345555555555544433 234444555566666666666666677777777766666666655433
No 136
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=60.52 E-value=24 Score=33.88 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.|..++..|..-+.....+...|+.....++.+|..++.+|..|.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666666666666665554
No 137
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=59.91 E-value=35 Score=28.51 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+..++.+...|+.|+.+-++..+.+.-++..|.
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655555544444443443333
No 138
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.50 E-value=18 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+..+...|+.||..|+.+++.++.++..|.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555554433
No 139
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.04 E-value=40 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.++..|++..-++.....-||+-+..|+.++++++.++
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333334444444555555555444
No 140
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=59.01 E-value=52 Score=24.36 Aligned_cols=38 Identities=32% Similarity=0.280 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
.|-+-.|+.++...++++..+..+++.+..+++.+..+
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq 42 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQ 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34567788888888888877767777777666665433
No 141
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=59.00 E-value=48 Score=23.98 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
++++.+++.+|+++..+..+.=.++..=-..|+.+.++.+.|..+-..+..+-..+
T Consensus 1 gd~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l 56 (61)
T 3b5n_A 1 GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRV 56 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998887777777666777777777777766555444444333
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.99 E-value=14 Score=36.27 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..+|+.++..|..++.-+..+++.++.+.+.++.++..++.++..|+.
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346666666666666666666677777777777777777777766654
No 143
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.36 E-value=52 Score=31.45 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 141 EesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+..+++..++|.+....+.+.+..+++.+.|++|+..++..+..+..+|....
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33455566667777777777777777777777788888777777777775444
No 144
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=57.47 E-value=7.6 Score=24.99 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=3.3
Q ss_pred CCCCCCCc
Q 019419 241 EPKIPIRN 248 (341)
Q Consensus 241 ppp~p~P~ 248 (341)
|||+|.|.
T Consensus 2 PPPPplPg 9 (26)
T 2v8f_C 2 PPPPPLPG 9 (26)
T ss_pred cCCCCCCC
Confidence 44444333
No 145
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=57.25 E-value=4.9 Score=34.54 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKI 189 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk----ENkELqqQLa~aEaEI 189 (341)
+..++.+.+|++++..++.|+.++-.+..++..+....+++.. +++.|+-|+...++.|
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaal 71 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAAL 71 (130)
T ss_dssp ------------------------------------------CTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888877777777666666655555432 5555555555555544
No 146
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.18 E-value=10 Score=24.48 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 170 ELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI~sL~ 193 (341)
-||=||.-|.++++.++.+|.+|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 466678888888888888887775
No 147
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.96 E-value=72 Score=25.35 Aligned_cols=29 Identities=17% Similarity=0.088 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
++|+..+.-...+..+|..+..|...+..
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444444444333
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.63 E-value=42 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekL 164 (341)
+..|.++++..+..+..|+.++..+.+++..|
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 149
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=56.18 E-value=51 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~ 184 (341)
||...++..+.||+++..+++.+..
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 150
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=56.10 E-value=17 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkE 174 (341)
.+..+.+.+++.++.+|..|+.+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 151
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.80 E-value=20 Score=29.36 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 160 ELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
++..++...++|+.|+..|+++++.++.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666666543
No 152
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.19 E-value=41 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
..|+..+..+..++..+..+...++.+..+++.+|..
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555544443
No 153
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.15 E-value=68 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
.-|+.++..+..++..++...+.|+......++.+...+.++
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~ 125 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEEL 125 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555544444444444444443
No 154
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.04 E-value=43 Score=27.76 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~ 198 (341)
.+|=.+...|.+.+..+.+.|..|+...+....++..++.++..|..-++.
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666677777777766654443
No 155
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=54.20 E-value=52 Score=33.21 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019419 175 NKKLVEDLVAAEAKI 189 (341)
Q Consensus 175 NkELqqQLa~aEaEI 189 (341)
.+.|..++..++.++
T Consensus 113 ~~~l~~~i~~le~~~ 127 (484)
T 3lss_A 113 SKDLSDQVAGLAKEA 127 (484)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 156
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.01 E-value=25 Score=34.35 Aligned_cols=31 Identities=32% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
++++++.+|++.+...+++++.+....+..+
T Consensus 3 ~~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Y 33 (333)
T 4etp_B 3 SEIAALEKEIAALEKEIAALEKEISKQEKFY 33 (333)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666555555555554444444333
No 157
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.99 E-value=48 Score=23.95 Aligned_cols=17 Identities=53% Similarity=0.675 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 170 ELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 170 ELEkENkELqqQLa~aE 186 (341)
.|+.||..|..++..+.
T Consensus 33 ~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 33 VLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.93 E-value=67 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
+.+.++++.+++..+...+.+..+|.++.
T Consensus 76 d~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 76 WQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666655555443
No 159
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=53.91 E-value=50 Score=23.79 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
|-...+.+|..+..||.+|+.|..++...+..+..+..+
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455678889999999999999988888766665555544
No 160
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=53.78 E-value=11 Score=29.91 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 155 FALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 155 ~ALkkELekLqerNeELEkENkELqq 180 (341)
+-|+..+..|.++|..||.||.-|++
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555566666666655543
No 161
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=53.58 E-value=59 Score=25.05 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVK------AQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELek------LqerNeELEkENkELqqQLa~aEaE 188 (341)
+-+|+..+..|..|+.++..|..++.. --.....|..+...++.+|..+...
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777766643 0123344444555555555555543
No 162
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.54 E-value=69 Score=26.55 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+..+..+..|...++......-....+|..+|.++..+...|
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444344444444444444443333
No 163
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.51 E-value=73 Score=25.95 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQ---SLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLq---erNeELEkENkELqqQLa~aE 186 (341)
-.++|+.||++|.+|+..+. .....|..+...|..+|+...
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34567777777776665532 222333334444555554443
No 164
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.50 E-value=24 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 161 FVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 161 LekLqerNeELEkENkELqq 180 (341)
+..|...|..|..++..|++
T Consensus 31 v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 165
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=53.48 E-value=30 Score=33.84 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAE 160 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkE 160 (341)
+++.++-++.........+|+.+..++.++
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 166
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.30 E-value=30 Score=27.18 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNe 169 (341)
|-.|+|.+.+.-.....|..||.+++-|..-|+++..
T Consensus 34 I~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 34 IRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444444444444444443433333
No 167
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=53.20 E-value=59 Score=32.79 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDL 150 (341)
Q Consensus 136 l~EKLEesE~LikeL 150 (341)
+.+.|++.++...++
T Consensus 98 V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHH
Confidence 444444444444444
No 168
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=53.14 E-value=71 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+.++..|..++..|+...+.||+|..--=++|...|-=|
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 55 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777778877665555555444433
No 169
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.50 E-value=21 Score=24.30 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~a 185 (341)
.+....+...++|+++|..|+.|+..+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 445556666677777777776666543
No 170
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=52.44 E-value=81 Score=24.55 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=49.4
Q ss_pred CcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 122 GKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 122 ~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+.|..-..+-..++..+.|+.....+..|++--..+..||.......+.+......+...|......+
T Consensus 14 ~~i~~~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 14 GYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp SSSCCSSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred hHHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333456777889999999999999998889999988877777777776666666665554444
No 171
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.11 E-value=33 Score=28.68 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcc
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFV---KAQSLNAELEK-------QNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELe---kLqerNeELEk-------ENkELqqQLa~aEaEI~sL~ 193 (341)
+....+|.|...+..|.+|+.++.+++..++ -|+.|++-.+. ...++.++...+..++..|.
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3566689999999999999999999888554 35555544431 22234444444444444444
No 172
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=52.11 E-value=68 Score=24.03 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
.+++.+++.+|+++..+..+.=.++..=-..|+.|.++.+.|..+-..+..+-..+
T Consensus 7 ~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l 62 (74)
T 2nps_A 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQL 62 (74)
T ss_dssp CSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998887777777766777777777777776655554444333
No 173
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.14 E-value=39 Score=23.31 Aligned_cols=8 Identities=13% Similarity=-0.031 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019419 167 LNAELEKQ 174 (341)
Q Consensus 167 rNeELEkE 174 (341)
.+.+|+.|
T Consensus 16 ~~~~Le~e 23 (36)
T 1kd8_B 16 KLWHLKNK 23 (36)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 33333333
No 174
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=50.79 E-value=25 Score=23.46 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
++.+|.+|+.+ .|.||-+|.+++++++-+|
T Consensus 2 evaqlekevaq-------aeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQ-------AEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHH-------HHHHHhHHHHHHHHHHHhc
Confidence 34556565554 4455666666677776665
No 175
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.31 E-value=1e+02 Score=25.13 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
..++..||+.--+.+..+++++..|++.+...--.-.+||.+..-|+.+|.-+
T Consensus 50 ~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 50 IMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566655566667777777777766665444455665555555555443
No 176
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.91 E-value=43 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 155 FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 155 ~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.-|.+++..++..|-.||..-+.|..-++.+.-+|..|.
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 357788888888888888877788877788887777665
No 177
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.86 E-value=74 Score=23.33 Aligned_cols=52 Identities=8% Similarity=0.175 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqq 180 (341)
..+++.+++.+|+++..+..+.=.++..=-..|+.|.++.+.|..+-..+..
T Consensus 7 ~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k 58 (65)
T 1gl2_A 7 GNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 58 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999998877777777667777777777777665444443
No 178
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.56 E-value=31 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVE 180 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqq 180 (341)
+|...++.+...|.+|+.|...|+.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4445555555566666666555543
No 179
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.49 E-value=25 Score=23.46 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKA 164 (341)
Q Consensus 150 LQsEL~ALkkELekL 164 (341)
|+.++.+...|..++
T Consensus 6 lekevaqaeaenyql 20 (33)
T 1fmh_A 6 LEKEVAQAEAENYQL 20 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHH
Confidence 444444444443333
No 180
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=49.21 E-value=22 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.109 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEa 187 (341)
+|+.++.+|...++.+.+....++.|+.+|+.+++++..
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444444444444444445555555555544443
No 181
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=49.11 E-value=73 Score=23.10 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
+|+.++.+|....++|-+...+...++..|.++|+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444444444444455555555543
No 182
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.83 E-value=65 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEk 173 (341)
+|..+|.+|+.|+..+++.|++|..
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666555555555543
No 183
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=48.69 E-value=36 Score=23.44 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKA 159 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkk 159 (341)
.|+.|.++...-+.+|++++..|++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 184
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=48.52 E-value=15 Score=31.25 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccccchhccc
Q 019419 151 QSEVFALKAEFVKAQSLNAELEK-----QNKKLVEDLVAAEAKIASLSSREQREAV 201 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEk-----ENkELqqQLa~aEaEI~sL~~~~~~~~~ 201 (341)
++||..|++.|..++.....++. -..++..+++.+..+|.+|+.....+.+
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ls 64 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLS 64 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444332 3445666666777777666654444333
No 185
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.51 E-value=76 Score=23.12 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELE 172 (341)
|-+++..|..++.+|......|.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333
No 186
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.04 E-value=28 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..+..|..+.+.|+.+|..|..++..+..++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666655443
No 187
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=47.52 E-value=77 Score=22.91 Aligned_cols=53 Identities=4% Similarity=0.100 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.+++.+++.+|+++..+..+.=.++..=-..|..|.++.+.|..+-..+..+-
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998888777777666777777777777766554444433
No 188
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=47.45 E-value=95 Score=23.93 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
+-..++..+.|+.....+..|++--.++..||.......+.|...-......|......+..
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999999999999999999998888888887777777777766665543
No 189
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.37 E-value=64 Score=31.60 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~a 185 (341)
++++.++|+.++++++.++..+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 190
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.64 E-value=51 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+..|.+.++..+..+..|+.++..+..++..|+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 191
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.84 E-value=53 Score=22.50 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 153 EL~ALkkELekLqerNeELEkENkELqqQLa 183 (341)
++..|+.-+....++-..||.+|+.|..++.
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666777777777766653
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.57 E-value=66 Score=32.49 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFA 156 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~A 156 (341)
.+.++++.+++..+..++.+..+|.+
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555444444444444433
No 193
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.52 E-value=34 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELq 179 (341)
+|..+++.+...|.+|+.|...|+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444455555555555544443
No 194
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.49 E-value=1.1e+02 Score=24.17 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
-...++|++...+..+..|+.==..|+.=-.++.+....|+.|..+|+..+..++.+.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544433222222222222233344455555555555555444443
No 195
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.33 E-value=39 Score=26.71 Aligned_cols=46 Identities=28% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
++.|--++++.-....-|+.|+.++..-..++..++.+||.|.+.+
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 196
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.97 E-value=61 Score=32.07 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer---NeELEkENkELqqQLa~aEaEI 189 (341)
.+++.+|-++....+....+|+.+..++.+++.+++.. .++|..+.++|..++..++.++
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666667777776666666653321 2334444445555555544444
No 197
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.93 E-value=56 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDL 150 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeL 150 (341)
+.+.+|+.-|++.+++..+.
T Consensus 38 ~~l~~LE~~l~elsn~ts~v 57 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSI 57 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444433
No 198
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.85 E-value=33 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekL 164 (341)
-|++....|..|++++.+|++|-+++
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666777777777777776653
No 199
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.77 E-value=1.2e+02 Score=26.63 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE-------KQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE-------kENkELqqQLa~aEaEI 189 (341)
.|+-+..++|.++.+.+...|..++...+.+...|- .....|..++..+..++
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566666666777777777777666665554444442 24444444444444444
No 200
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.71 E-value=1.3e+02 Score=24.53 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
.|+.-..+.--.+.+..+.+|+.++..++
T Consensus 14 ~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 14 TKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666544
No 201
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=44.25 E-value=85 Score=27.39 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 019419 174 QNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~sL~~ 194 (341)
..+++..+++.+.+++..|..
T Consensus 81 akk~~ea~la~l~~~~~~LeA 101 (146)
T 2xnx_M 81 LLGNAKLELDQLSSEKEQLTI 101 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHhhHHHHHH
Confidence 333455555555555555553
No 202
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=43.91 E-value=87 Score=27.98 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
+.|=+...+..++.||.++..|..++...++.+..+..+
T Consensus 126 ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888877766666655555
No 203
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.85 E-value=44 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|+.++..|+.+...|+.+-..+..+|.+|+
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444443
No 204
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.73 E-value=57 Score=27.06 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=6.7
Q ss_pred hhHHHHHHHH
Q 019419 209 FKDVQKLIAN 218 (341)
Q Consensus 209 ~kdiqkl~a~ 218 (341)
+++||++|..
T Consensus 89 ~~kIq~ILYa 98 (106)
T 4e61_A 89 VKKVESILYA 98 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5777776653
No 205
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.70 E-value=54 Score=25.18 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
.|+..+..+..++..+..+...++.+..+++.+|
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 206
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=43.42 E-value=46 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 153 EL~ALkkELekLqerNeEL 171 (341)
+|.+.+.|+..+++.|.+|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3344445555555555444
No 207
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=43.04 E-value=1.2e+02 Score=23.89 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
-+-|.+-|++.+.| -.+|.+++.|+..+++.|..|.
T Consensus 26 R~AL~eaL~EN~~L----h~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 26 RKALYEALKENEKL----HKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544 4455556666666555555553
No 208
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.99 E-value=1.4e+02 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
.|.|..-..|..+..|+.++..|+..+..
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555444443
No 209
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=42.89 E-value=65 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkk 159 (341)
...++-|..+|....+-...|+++|...+.
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~ 192 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRD 192 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444433333333333333
No 210
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=42.87 E-value=33 Score=22.55 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI 189 (341)
+......||.||++|+.+++.+-+++
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778888888888887766654
No 211
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=42.82 E-value=88 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 169 AELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..||.|.=+|..++....-+|..|.
T Consensus 59 ~~lEeEKYDlE~kv~kq~yEI~eL~ 83 (107)
T 1ytz_T 59 YQLQTEKYDFAEQIKRKKYEIVTLR 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhhhhHHHHHH
Confidence 3344444444444444444443333
No 212
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.47 E-value=49 Score=32.75 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 170 ELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI 189 (341)
.++..+.+|++++..++..|
T Consensus 116 ~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 116 MNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444433
No 213
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=42.42 E-value=22 Score=25.82 Aligned_cols=6 Identities=0% Similarity=-0.241 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019419 155 FALKAE 160 (341)
Q Consensus 155 ~ALkkE 160 (341)
..|..|
T Consensus 37 ~~l~~e 42 (57)
T 2wuj_A 37 EIVLRK 42 (57)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 214
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.10 E-value=52 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
-|+.+-+++.+|+.++..|..|+..++..
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666555555444433
No 215
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.07 E-value=1.1e+02 Score=27.66 Aligned_cols=13 Identities=31% Similarity=0.674 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhh
Q 019419 286 SFAQLYHSLTKQV 298 (341)
Q Consensus 286 evVEfY~sL~kr~ 298 (341)
.+..||.-++|-=
T Consensus 167 ~l~qFY~Kv~kaL 179 (190)
T 4emc_A 167 SLNQFYNKIAKSL 179 (190)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3456775555433
No 216
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.79 E-value=48 Score=22.47 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~AL 157 (341)
.|+.|.++.-.-+.+|++|+..|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444443
No 217
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.76 E-value=48 Score=22.47 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019419 161 FVKAQSLNAELEKQ 174 (341)
Q Consensus 161 LekLqerNeELEkE 174 (341)
++.+...|.+|+.|
T Consensus 9 vEeLl~~~~~Le~E 22 (33)
T 3c3g_A 9 LXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 33333333333333
No 218
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.73 E-value=85 Score=23.89 Aligned_cols=41 Identities=29% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELq 179 (341)
-|..+|.-++.|-.=-.+|..|+..++.....|+.||..|+
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34444444444433333455666666667777777776665
No 219
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.03 E-value=2e+02 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
+=++-.......++.++..|..|...+....++|..+..++
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443344444555555555555444444444444433333
No 220
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=40.93 E-value=1.7e+02 Score=24.90 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhHHHH-HHHHhhh
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQK-LIANKLE 221 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqk-l~a~KLe 221 (341)
+|++|.....||..+ ++|.....+|+.+++.++-++..|.+..+-. .--+.-|++ +..+|-|
T Consensus 49 ~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e~~~~~~------~~~~e~le~~la~KkAE 111 (125)
T 2pms_C 49 LQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAEENNNVE------DYFKEGLEKTIAAKKAE 111 (125)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCC----C------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHHHHHH
Confidence 467777666666665 6677888899999999999998888633211 122566666 4444433
No 221
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=40.89 E-value=1.4e+02 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALk 158 (341)
-+|+|.++-.+-+++.|..||....
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~ 49 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAI 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888877888888777776554
No 222
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=40.61 E-value=1.1e+02 Score=25.69 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhhH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQ----------SLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLq----------erNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~kd 211 (341)
..+..+.....++..+++|+..++ +-...|++.......++.+.-.++.+|.-.++- ..-+.
T Consensus 15 ~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~--------~~~R~ 86 (114)
T 1hx1_B 15 HLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENF--------KDSRL 86 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTC--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhH--------HHHHH
Confidence 333444444445555555554422 223456678888888888888899888865542 22333
Q ss_pred HHHHHHHhhhh
Q 019419 212 VQKLIANKLEH 222 (341)
Q Consensus 212 iqkl~a~KLe~ 222 (341)
.||-+-+++|.
T Consensus 87 kRK~lV~~iQ~ 97 (114)
T 1hx1_B 87 KRKGLVKKVQA 97 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 223
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.38 E-value=26 Score=26.52 Aligned_cols=26 Identities=4% Similarity=0.094 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLq 165 (341)
|..+-++|..|+.++..|..++..|+
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444444433
No 224
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=39.90 E-value=55 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
++.|+.|+++.-+-..+|++|+..|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555565555555555555555554
No 225
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.89 E-value=1.2e+02 Score=28.85 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 136 FEEKLMLSENLVKDLQSEV-----------FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL-----------~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
|+.+|.+.++--.+++.+. ++|.+++.+.+.+.++||.|..+|.++|..++++|..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555444333332 24556666666778888888888888888888888554
No 226
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.86 E-value=1.3e+02 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeEL 171 (341)
.++-++-|..+++..+..+..++.++..++..+..+.+...++
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666666555555444444333
No 227
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.84 E-value=1e+02 Score=22.18 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++.-+.|+.....+..|++--.++..|+.......+.|...-......|......+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888888888888888888877777778777777777776665554
No 228
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=39.34 E-value=1.3e+02 Score=23.32 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqer 167 (341)
|.+|+.+++.....+..++.++..++..+..++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555555544433
No 229
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.02 E-value=92 Score=24.88 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk 173 (341)
-+-|.+-|++.+. |..+|..++.|+..+++.|.+|..
T Consensus 30 r~AL~eaL~EN~~----Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 30 RKALYEALKENEK----LHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 455566667777777766666653
No 230
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.76 E-value=1.4e+02 Score=23.94 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELq 179 (341)
|=++..+.=++.|+..+..+.+.+..++++...++.+..++.
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444444444444444444444444433
No 231
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.70 E-value=1.8e+02 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ 155 (341)
..+.....++++..++-|++.-.
T Consensus 26 Leeaek~adE~eR~~k~lE~r~~ 48 (147)
T 2b9c_A 26 LEEAEKAADESERGMKVIESRAQ 48 (147)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344445555555555554433
No 232
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.66 E-value=2.2e+02 Score=25.58 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQL 182 (341)
+...+.-...|+.+...|..+..++..+++++-....++..+|
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555566666666666666666666655544444443
No 233
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.31 E-value=37 Score=31.16 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=36.4
Q ss_pred cccCCchhHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 123 KIEDGLMDKKKKEF-EEKLMLSEN--LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 123 ~~~~~~~~~~~kel-~EKLEesE~--LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
-.+.+++.+-.-+| -.+|+.+|. ..+.|+-++-+..+|-..+...-++|..|+.+|+..|..+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 5 PLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCchhHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 33444555554444 344444443 3455566666666666666666666666666666666666643
No 234
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=38.21 E-value=1.4e+02 Score=26.59 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
-.+...+|+..-+..+..|++++..|.+.+.....+++.++.+|++.-.++
T Consensus 122 paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 122 PAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888889999999988888888877788888888887665555
No 235
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.15 E-value=44 Score=32.60 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFA----------LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~A----------LkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.+.++++.+++..+...+.+..+|.. |..+...+.++...|+.+..++..++..+-..|.++.
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 109 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLP 109 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34555566666666666655555543 2344555556666666666666666666555555554
No 236
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.09 E-value=72 Score=21.97 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkEL 161 (341)
+..|+.|.++.-.-..+|++|+..|++-+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44455555555555555555555554433
No 237
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.07 E-value=1.4e+02 Score=24.71 Aligned_cols=7 Identities=0% Similarity=-0.069 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019419 167 LNAELEK 173 (341)
Q Consensus 167 rNeELEk 173 (341)
+..+|+.
T Consensus 96 ~i~~L~~ 102 (142)
T 3gp4_A 96 RIDVMQE 102 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 238
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=38.05 E-value=45 Score=27.30 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLq 165 (341)
+++.++|+...+.+..|+.++..|+.|+.+|+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555566677777777777777664
No 239
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=37.84 E-value=67 Score=29.83 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 169 AELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI~sL~ 193 (341)
..||.|....+.+..-+|+++..++
T Consensus 134 ~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 134 PVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 3444444444444444445554443
No 240
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.79 E-value=62 Score=22.28 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDL 182 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQL 182 (341)
+|..+++.+...+.+|+.|...|+.-|
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444445555555555555544444433
No 241
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=36.92 E-value=2.2e+02 Score=27.09 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------------HHHHHHHHHHHHHhhccccch
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNK-------------KLVEDLVAAEAKIASLSSREQ 197 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEk--ENk-------------ELqqQLa~aEaEI~sL~~~~~ 197 (341)
+.-|+-+|..++..+.+++.++.....++..+....+.-+. +.+ ++.++|..+...=..|.+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--- 380 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQA--- 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHH---
Q ss_pred hccccccCCchhhHHHH-HHHHhhhhhhhhhhhhccCCCCCCCCCCCCCCC
Q 019419 198 REAVGEYQSPKFKDVQK-LIANKLEHSIVMTDAISETSINTPPSEPKIPIR 247 (341)
Q Consensus 198 ~~~~~e~q~~~~kdiqk-l~a~KLe~s~~~~~a~~~~s~~~~~~ppp~p~P 247 (341)
|+ ||..||+. --+-+|||.++
T Consensus 381 ---------------q~~~~~~~~~~--------------~~~~~~p~~~~ 402 (406)
T 4dyl_A 381 ---------------QQELLQTKLEH--------------LGPGEPPPVLL 402 (406)
T ss_dssp ---------------HHHHHHHHHHT--------------TTTSCCCCCCC
T ss_pred ---------------HHHHHHHHHHh--------------cCCCCCCCcCC
No 242
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=36.85 E-value=89 Score=26.89 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 019419 140 LMLSENLVKDLQSEVFALKAEFVKAQ----------SLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (341)
Q Consensus 140 LEesE~LikeLQsEL~ALkkELekLq----------erNeELEkENkELqqQLa~aEaEI~sL~~~~~~ 198 (341)
|...+..+.....++..+..++..++ +-...|++......+++.+.-.++.++.-.++-
T Consensus 23 L~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~ 91 (135)
T 1i6z_A 23 LKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQF 91 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccH
Confidence 33333344444445555555554433 222566778888888888888888888765554
No 243
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.70 E-value=19 Score=34.54 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~ 190 (341)
|+..|.++..++..++...+.|+.++.+|++++..++..|.
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555556666666666666766666663
No 244
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=36.34 E-value=2e+02 Score=24.89 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=20.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (341)
Q Consensus 124 ~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALkkELe 162 (341)
|-+..+.+-.+++++.+...+..+..|+-+...+-+|+.
T Consensus 22 VTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 22 VTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344334444555666666666666666555554444444
No 245
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.93 E-value=1.2e+02 Score=24.26 Aligned_cols=20 Identities=40% Similarity=0.411 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNK 176 (341)
Q Consensus 157 LkkELekLqerNeELEkENk 176 (341)
|.+++..+.+....|+.+|.
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 246
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=35.68 E-value=1.3e+02 Score=22.20 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++.+.|++....+..|+.--.++..|+.....+.+.+......+..++......+
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl 61 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRL 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999988889999988877777777776666666665554443
No 247
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.21 E-value=1.1e+02 Score=28.09 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAE 186 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEk---ENkELqqQLa~aE 186 (341)
.+|..+|.+|+.|+..+++.|.+|.. +.++|-.-|..+-
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566777777777777776664 3344444444433
No 248
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=34.70 E-value=2e+02 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
|...+++-..+...|..++...+..+..|.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555444443
No 249
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.64 E-value=1.4e+02 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 159 AEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 159 kELekLqerNeELEkENkELqqQLa 183 (341)
.++...+....+|......|+.+|+
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333343
No 250
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=34.58 E-value=2.3e+02 Score=24.56 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK-----AQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELek-----LqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++|.+.-+..=.-+.+||.=++.|++.+.. ...+.+.+.+++..+...|..++.-|
T Consensus 16 k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 16 QTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333333344566666666555543 33344444444444444444444333
No 251
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=34.53 E-value=1.3e+02 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~AL 157 (341)
+..++..|...+......+.++...
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a 95 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLA 95 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333333333
No 252
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.42 E-value=98 Score=28.09 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 138 EKLMLSENLVKDLQSEVFALKAEF 161 (341)
Q Consensus 138 EKLEesE~LikeLQsEL~ALkkEL 161 (341)
..|+..+.....++.++.+.+.++
T Consensus 70 ~~l~~~~a~l~~~~a~l~~a~~~~ 93 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLVARKTAY 93 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333
No 253
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=34.37 E-value=1e+02 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSE 153 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsE 153 (341)
.-.++.|+|+++|.++++|+..
T Consensus 6 ~~ee~~e~L~~~e~l~~el~~t 27 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAELNET 27 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhH
Confidence 3468889999988888777543
No 254
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.33 E-value=1.6e+02 Score=23.07 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019419 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 143 sE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s 191 (341)
.|+-+..|++-++.|+..+.++. .+++.-..+|++.+..+|.++..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLL---aEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARIL---AEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666666666666666654 33344445666777777766543
No 255
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.27 E-value=1.7e+02 Score=23.30 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019419 174 QNKKLVEDLVAAEAKIAS 191 (341)
Q Consensus 174 ENkELqqQLa~aEaEI~s 191 (341)
|.++.-+.|-..-+....
T Consensus 52 eiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 52 EIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 455555555444444433
No 256
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.76 E-value=75 Score=21.62 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 019419 161 FVKAQSLNAELEKQ 174 (341)
Q Consensus 161 LekLqerNeELEkE 174 (341)
++.+...+.+|+.|
T Consensus 10 VEeLl~~~~~Le~E 23 (34)
T 3c3f_A 10 LEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHH
Confidence 33333333333333
No 257
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.72 E-value=46 Score=31.32 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 145 NLVKDLQSEVFALK----AEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 145 ~LikeLQsEL~ALk----kELekLqerNeELEkENkELqqQLa 183 (341)
.+-.++.+++.++. .|++.+.+.++.|++|..+|+++..
T Consensus 167 ~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 167 EMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444432 4455555555555555555544443
No 258
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.66 E-value=1.1e+02 Score=28.09 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLN 168 (341)
Q Consensus 152 sEL~ALkkELekLqerN 168 (341)
.+|..|+.|+..|+...
T Consensus 129 eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 129 NEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444433333333
No 259
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.49 E-value=1.5e+02 Score=29.61 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+|+.++..|+..+........-|+.-++++..++.++|-.|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665433355555555555555555555554
No 260
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.45 E-value=84 Score=30.65 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ 155 (341)
+.+.++++.+++..+...+.+..+|.
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667766666666655543
No 261
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.44 E-value=27 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI 189 (341)
+.|+.++..|+.+++.++.++
T Consensus 188 e~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 188 ESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 262
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.41 E-value=60 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ 155 (341)
|+.|+++.-.-..+|++|+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHH
Confidence 33333333333333333333
No 263
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.35 E-value=2.5e+02 Score=25.78 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
.+++.+.++|...++-..+++.|..++.+.+.+.+.+..++.+...++
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666666666666666666666666666666665544443
No 264
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.29 E-value=1.9e+02 Score=27.91 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLV 147 (341)
Q Consensus 133 ~kel~EKLEesE~Li 147 (341)
++-.+|++.+.|...
T Consensus 170 ~~~f~~q~~~~e~~~ 184 (373)
T 3hhm_B 170 IKIFEEQCQTQERYS 184 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555666666666543
No 265
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.07 E-value=82 Score=21.33 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALk 158 (341)
..|++|+++.-.-+.+|++|+..|+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555555555555555553
No 266
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.98 E-value=1.9e+02 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELE 172 (341)
|+.+|..-.++|..+.+..+.+.
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 267
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=32.92 E-value=2.7e+02 Score=25.92 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
.+-+..|.++..++.....+...-+..+..|.-.|..+|.+|..|+.
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~ 126 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQT 126 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhh
Confidence 35577788888888877777777777777777777777777777764
No 268
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=32.92 E-value=75 Score=21.64 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNK 176 (341)
Q Consensus 157 LkkELekLqerNeELEkENk 176 (341)
|..+++.+...|.+|+.|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444444433
No 269
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=32.66 E-value=1.8e+02 Score=22.74 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcc
Q 019419 148 KDLQSEVFALKAEFVKAQSLNAELE-------KQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 148 keLQsEL~ALkkELekLqerNeELE-------kENkELqqQLa~aEaEI~sL~ 193 (341)
++|..+|...+.|+..|......|. .-|++|+.++.-++..+..|.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5666666666666666665555554 366777777777777776665
No 270
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=32.49 E-value=1.6e+02 Score=22.26 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++--+.|+.....+..|++--..+..||.......++|...-......|......+
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~ 70 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKL 70 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777888888888888888877777777777666666666655554
No 271
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.39 E-value=14 Score=27.18 Aligned_cols=47 Identities=32% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+..|++.+.-.-+|..++..-...||..|..|...++.++..|..|.
T Consensus 5 vaqlknrvayklkenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 5 VAQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
No 272
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.11 E-value=1.2e+02 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 170 ELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 170 ELEkENkELqqQLa~aEaEI 189 (341)
-|.+|..+=..+|..+|.+.
T Consensus 21 hLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 21 NLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhhh
Confidence 33333333333344444333
No 273
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.04 E-value=70 Score=31.38 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 167 LNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 167 rNeELEkENkELqqQLa~a 185 (341)
+...|++|..+++.++..+
T Consensus 71 ~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 71 EQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555443
No 274
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.34 E-value=1.4e+02 Score=21.26 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+.+|..|+..+...|+.|.+.|---..-++.++.+|..|
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianl 43 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHH
Confidence 344555555555555555544433333344555555443
No 275
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=31.24 E-value=1.2e+02 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
=.++|++.++-+.+|++++.-|..++..+..
T Consensus 59 eLe~leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 59 KLSKLEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677777777777777776443
No 276
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=31.20 E-value=84 Score=24.98 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFA 156 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~A 156 (341)
..++|++-|+..+..+.||..-|.-
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444
No 277
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.97 E-value=2.1e+02 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~AL 157 (341)
++..+++.|+.+|.+.+..+..-...-++|
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778999999988777665444444444
No 278
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.35 E-value=3.6e+02 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=6.5
Q ss_pred hHHHHHHHHhhhh
Q 019419 210 KDVQKLIANKLEH 222 (341)
Q Consensus 210 kdiqkl~a~KLe~ 222 (341)
+++++||..||+.
T Consensus 544 ~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 544 KEQERTLALKLQE 556 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344466655544
No 279
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=29.69 E-value=2.4e+02 Score=24.40 Aligned_cols=30 Identities=3% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkEN 175 (341)
+..+|+..+.++..|+.+|.-+...+..|.
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~ 59 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQV 59 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444433
No 280
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.67 E-value=85 Score=23.64 Aligned_cols=56 Identities=30% Similarity=0.334 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDL--QSEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKI 189 (341)
Q Consensus 134 kel~EKLEesE~LikeL--QsEL~ALkkELekLqerNeELEk--ENkELqqQLa~aEaEI 189 (341)
+-|+|+....++-++-| -..|..|++.-+.++...++|-- |.+....++..++.+|
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555554444433322 12233333333333334444421 4555555566666555
No 281
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=29.49 E-value=21 Score=27.55 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=17.0
Q ss_pred CCCCCCCcccccccCCchHHHHHHHHHh
Q 019419 268 PPPPPRPPARAAATQKTPSFAQLYHSLT 295 (341)
Q Consensus 268 Pp~P~~~~~~~~~v~raPevVEfY~sL~ 295 (341)
++.++....+.....-.+++.++|+.+.
T Consensus 16 ~~~~~~~~ir~~~~~D~~~~~~l~~~~~ 43 (166)
T 4evy_A 16 NLYFQGMNIKPASEASLKDWLELRNKLW 43 (166)
T ss_dssp ----CCEEEEECCGGGHHHHHHHHHHHS
T ss_pred cCCCCCcEEEECCHHHHHHHHHHHHHHh
Confidence 3334444556677778899999887653
No 282
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.40 E-value=1e+02 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.164 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALk 158 (341)
..|+.|+++.-.-+.+|++|+..|+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455555554444455555555543
No 283
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.58 E-value=2.1e+02 Score=22.41 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+.|...++-.+.+-+.|+..++...++|..=...|..-+..++.+...|
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777777777764455555555555444333
No 284
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.39 E-value=48 Score=24.99 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVF 155 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~ 155 (341)
+|.+|.+....++...+.+..+|.
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld 36 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELD 36 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 285
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.18 E-value=1.1e+02 Score=29.77 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqer---NeELEkENkELqqQLa~aEaEI~sL 192 (341)
+++.++-++....+....+|+.+..++.+++.+++.. .++|..+.++|..++..++.++..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555442211 1223334445555555555444333
No 286
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=28.13 E-value=36 Score=26.54 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~ 195 (341)
..+|..+|..+.+.+.-+.+...+-|.-|..|..|..-++.+|..|.-+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555566666666666667777777777777666543
No 287
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.00 E-value=1.8e+02 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
.|+.|-..|+.||..-..+...||.|-..++.-+..
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 334444445555555555555555555544444433
No 288
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.96 E-value=70 Score=24.38 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 129 ~~~~~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELE 172 (341)
..+++.+++.+|+++..+..+.=.+|..=-..|+.|.++.+.|.
T Consensus 13 ~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~ 56 (80)
T 1l4a_A 13 QSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQ 56 (80)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35689999999999988777665555555455555444444443
No 289
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.47 E-value=1e+02 Score=25.06 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhccc
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFV---KAQSLNAEL--------------EKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELe---kLqerNeEL--------------EkENkELqqQLa~aEaEI~sL~~ 194 (341)
....++-|...+..|++|+.++.+++..++ -|+.+.+-. ..+..+|..+|..+..++..|..
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777776664333 244444333 23444566666666665555543
No 290
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=27.44 E-value=1.6e+02 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFA 156 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~A 156 (341)
+++|+.+++.+-+-..+|..+|..
T Consensus 61 Yk~Lhaev~~v~~~F~~Ld~~L~~ 84 (140)
T 1xaw_A 61 YKSLQSVLDEINKELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666665555555555554
No 291
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.07 E-value=1.5e+02 Score=27.31 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (341)
Q Consensus 150 LQsEL~ALkkELekLqerNeELEkENkELqqQ 181 (341)
++..+..+..++..+.++..+|+.+..+|+.+
T Consensus 97 ~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 97 AEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566666666666666666666666
No 292
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.07 E-value=90 Score=21.27 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~AL 157 (341)
.|++|.++.-.-..+|++|+..|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444444
No 293
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.95 E-value=1.2e+02 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 152 sEL~ALkkELekLqerNeELEkENkELqqQLa~aE 186 (341)
.++..|+.|+..|...-..|....+.++++|..+.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666665554
No 294
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=26.93 E-value=1.8e+02 Score=21.10 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=22.8
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 121 ~~~~~~~~~~~~~kel~EKLEesE~LikeLQsEL~ALk 158 (341)
...|..+.....-..+...-+..+.++..|++.+..|.
T Consensus 6 ~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 6 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556655555566666666666667777777776664
No 295
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.75 E-value=3.3e+02 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
.+....+.++.+.++|+....+|+++|...
T Consensus 202 ~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~ 231 (373)
T 3hhm_B 202 RIMHNYDKLKSRISEIIDSRRRLEEDLKKQ 231 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555433
No 296
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.58 E-value=1.6e+02 Score=20.80 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 153 EL~ALkkELekLqerNeELE 172 (341)
++.-...|+.+..++..+|+
T Consensus 10 kI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333
No 297
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.49 E-value=1.1e+02 Score=20.84 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019419 161 FVKAQSLNAELEKQ 174 (341)
Q Consensus 161 LekLqerNeELEkE 174 (341)
++.+...|.+|+.|
T Consensus 10 VEeLl~~~~~Le~e 23 (34)
T 2hy6_A 10 VEELASANYHLANA 23 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHH
Confidence 33333333333333
No 298
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.42 E-value=1.4e+02 Score=19.84 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 019419 150 LQSEVFALKAEFVK 163 (341)
Q Consensus 150 LQsEL~ALkkELek 163 (341)
|++++.+|++|+..
T Consensus 7 lkqeiaalkkeiaa 20 (33)
T 4dzn_A 7 LKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 299
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.37 E-value=1.2e+02 Score=21.46 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019419 168 NAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 168 NeELEkENkELqqQLa~aE 186 (341)
..+|+..|.+|..++..+.
T Consensus 12 ~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 300
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.35 E-value=1.8e+02 Score=20.75 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 144 E~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaE 188 (341)
|+-+..|++-++.|+..+.++. .+++.-..+|++.+..+|.+
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLl---ae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLL---AEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 3334455555555555544433 33333344555666655543
No 301
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.09 E-value=2.8e+02 Score=23.02 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHhhccccchhccccccCCchhhHHHHHH
Q 019419 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNK----KLVEDL-VAAEAKIASLSSREQREAVGEYQSPKFKDVQKLI 216 (341)
Q Consensus 142 esE~LikeLQsEL~ALkkELekLqerNeELEkENk----ELqqQL-a~aEaEI~sL~~~~~~~~~~e~q~~~~kdiqkl~ 216 (341)
...+.+++||.++.+...+|.-.++...+.++.-. ++..+- .+-...+..|++ |+.+++++|
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~-------------KiaeLKrqL 98 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLET-------------KLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q ss_pred HH
Q 019419 217 AN 218 (341)
Q Consensus 217 a~ 218 (341)
|.
T Consensus 99 Ad 100 (107)
T 2k48_A 99 AD 100 (107)
T ss_dssp HH
T ss_pred HH
No 302
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.80 E-value=3.8e+02 Score=27.46 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c---cccchhccccccCCchhhHHHHHHH
Q 019419 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS-L---SSREQREAVGEYQSPKFKDVQKLIA 217 (341)
Q Consensus 149 eLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~s-L---~~~~~~~~~~e~q~~~~kdiqkl~a 217 (341)
+|+.++.-|+..+......+.-|+.-+.++..++.++|-.|.. + ++-=.+-...+-.---.+++||.|.
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLe 187 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLT 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHH
Confidence 5666666666666654455566666666666666666665421 1 1111121112222445678888554
No 303
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.65 E-value=2.3e+02 Score=21.70 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 132 KKKEFEEKLMLSENLVKDLQSEVFA--L----KAEFVKAQSLNAELEKQNKKLVEDLV 183 (341)
Q Consensus 132 ~~kel~EKLEesE~LikeLQsEL~A--L----kkELekLqerNeELEkENkELqqQLa 183 (341)
.+..|..+++..+.-+..|+.++.. + ..++..+..+.+.++.+...+..+-.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666642 1 23444555555555555444444433
No 304
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.61 E-value=96 Score=25.62 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.8
Q ss_pred hhhHHHHHH
Q 019419 208 KFKDVQKLI 216 (341)
Q Consensus 208 ~~kdiqkl~ 216 (341)
..+++|.++
T Consensus 83 d~~~lr~~~ 91 (171)
T 2zvf_A 83 DMQALQKLA 91 (171)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 345666644
No 305
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.39 E-value=3.3e+02 Score=23.56 Aligned_cols=28 Identities=4% Similarity=0.012 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
++..|+..+......+.++...+.++++
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~~~~~r 85 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQLTVNR 85 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455444444443
No 306
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.08 E-value=1.2e+02 Score=20.59 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAE 186 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aE 186 (341)
+.+.-++|-.+|.+|+.++.+++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555555544
No 307
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.02 E-value=59 Score=26.64 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 137 ~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
..-|+.+=++++.|+.++..|..+. .++..|+.+|..|...++.+|.++
T Consensus 66 a~IL~~aieYIk~Lq~~~~~l~~~~----~~~~~l~~~n~~L~~riqeLE~~a 114 (118)
T 4ati_A 66 GTILKASVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQELEMQA 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----C-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888776542 234556666666666666666544
No 308
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.77 E-value=40 Score=32.33 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+|...+..+..+...|+.....++.+++.++.+|
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443344444444444333
No 309
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.50 E-value=2.6e+02 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQS 166 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELekLqe 166 (341)
+++..|+..+.....++.++.+.+.++...+.
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~ 97 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARV 97 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776665443
No 310
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.45 E-value=2.1e+02 Score=23.58 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
+.++.++|+.+..+|+..++.++..|..+.
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555554433
No 311
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.44 E-value=1.4e+02 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 165 QSLNAELEKQNKKLVEDLVAAEAK 188 (341)
Q Consensus 165 qerNeELEkENkELqqQLa~aEaE 188 (341)
++.|..|-.....|+.+....+.+
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQE 40 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQE 40 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 312
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.23 E-value=3.1e+02 Score=25.07 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAE 160 (341)
Q Consensus 128 ~~~~~~kel~EKLEesE~LikeLQsEL~ALkkE 160 (341)
.....+++++++++..+..+.+++.++.++..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777666666666666554
No 313
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.07 E-value=2.7e+02 Score=22.04 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
=|.-+=+.|..|+.+...+..+. .++..||..|+.|--.++.+|-++
T Consensus 33 IL~ksvdYI~~Lq~e~~r~~e~e----~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 33 ILKASVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35556677888888877765543 345667777777777777766655
No 314
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.72 E-value=1.2e+02 Score=20.61 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALk 158 (341)
+.|+.+.++.-.-+.+|++++..|+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555554444455555555553
No 315
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.70 E-value=4.2e+02 Score=26.28 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA-------------------------EFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkk-------------------------ELekLqerNeELEkENkELqqQLa~ 184 (341)
++.+++|+..|+..++.-.+-..-+..|+. |+.++...+...+.++.+|+..+..
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~ 116 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNS 116 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHhhcc
Q 019419 185 AEAKIASLS 193 (341)
Q Consensus 185 aEaEI~sL~ 193 (341)
...+|..|.
T Consensus 117 ~~~~i~~L~ 125 (411)
T 3ghg_C 117 NNQKIVNLK 125 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 316
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.70 E-value=1.1e+02 Score=19.55 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELE 172 (341)
Q Consensus 156 ALkkELekLqerNeELE 172 (341)
.|.+|++.++++...|.
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555544444443
No 317
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=23.68 E-value=98 Score=29.59 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 167 LNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 167 rNeELEkENkELqqQLa~aEaEI 189 (341)
+.+.|+.++.+|+.+|..+...|
T Consensus 36 ~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 36 VLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444433
No 318
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.67 E-value=81 Score=27.09 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELekL 164 (341)
+..++.|.+.|......+..-+.+...+..|++.|
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778877776666666666666666666653
No 319
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.53 E-value=1.1e+02 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 019419 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQR 198 (341)
Q Consensus 151 QsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~ 198 (341)
+.+|..+-+|+.. +...||.|.=+|..++....-+|..|..+-++
T Consensus 44 ~~~L~e~~keLh~---~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 44 EDQLREKAKELWQ---TIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444 44667777777777777777777666654444
No 320
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.41 E-value=1.7e+02 Score=20.68 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 135 EFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 135 el~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
+|-++++-+...|...+.+|..|++.+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444443
No 321
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.13 E-value=66 Score=32.67 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=6.1
Q ss_pred chhhccchhhh
Q 019419 322 VGEIQNRSAHL 332 (341)
Q Consensus 322 IGEIeNRS~hL 332 (341)
-.+|++|-+++
T Consensus 500 ~~~~~eR~~~~ 510 (575)
T 2i1j_A 500 VDPVADRRTLA 510 (575)
T ss_dssp CCGGGGCCCHH
T ss_pred ccchHHHHHHH
Confidence 44556776543
No 322
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.12 E-value=3.7e+02 Score=23.27 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 131 KKKKEFEEKLMLSENLVKDLQSEVFAL 157 (341)
Q Consensus 131 ~~~kel~EKLEesE~LikeLQsEL~AL 157 (341)
.++...+..|+..+......+.++...
T Consensus 60 ~~l~~a~a~l~~a~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 60 ATYDSAKGDLAKAQAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555555555443
No 323
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=22.88 E-value=2.2e+02 Score=20.50 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
++..+.|+.....+..|++--.++..|+.......+.|...-......|......+
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888877777777776666666666555544
No 324
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=22.71 E-value=2.2e+02 Score=20.48 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~ 184 (341)
.-.++.++...++++..+..+++.+..++..+..+....+.-..-|.+++..
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~ 58 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQ 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Confidence 4445667777777776666666666666666554444433333333333333
No 325
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.53 E-value=1.6e+02 Score=19.85 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019419 157 LKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 157 LkkELekLqerNeELEkENkEL 178 (341)
|..+++.+...+.+|+.|...|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444455444333
No 326
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.42 E-value=1.6e+02 Score=24.53 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 166 SLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 166 erNeELEkENkELqqQLa~aEaEI 189 (341)
.+...|+.+...|+.+|+.++.-+
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~ 30 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETAR 30 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 327
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.31 E-value=97 Score=19.97 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 019419 172 EKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 172 EkENkELqqQLa~aEaEI~sL 192 (341)
...|..|.++++.++-+|..|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 344555555566666666554
No 328
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.25 E-value=2.2e+02 Score=24.40 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 019419 153 EVFALKAEFVKAQS 166 (341)
Q Consensus 153 EL~ALkkELekLqe 166 (341)
.+..+..|+..|+.
T Consensus 40 ~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 40 ELSDRDDEVKRLRE 53 (135)
T ss_dssp HTTTHHHHHHTHHH
T ss_pred HHhhhHHHHHHHHH
Confidence 33334444444443
No 329
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.20 E-value=1.5e+02 Score=20.13 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019419 156 ALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 156 ALkkELekLqerNeELEkENkEL 178 (341)
+|..+++.+...+.+|+.|...|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 34444444444555555443333
No 330
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.17 E-value=4.9e+02 Score=24.33 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~ 193 (341)
.|.++-++|.+|+.--..+-++...||.+=..|...|...+..+.-++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555666666555555566666666666667777766665554333
No 331
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.07 E-value=2.7e+02 Score=21.29 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (341)
Q Consensus 139 KLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~a 185 (341)
+++..+..+..|+.++..++.++.......++|-.=...|..++++.
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665554433333333333344444433
No 332
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.67 E-value=2e+02 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccccccCCchhh-HHHHHHHHh
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK-DVQKLIANK 219 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEaEI~sL~~~~~~~~~~e~q~~~~k-diqkl~a~K 219 (341)
+..+.+.|+.+..+|+..+..++..+..+...+. -..+.|- -|+.|+|.|
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~------~~~~~~~~Li~~~~~~~ 135 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTKKFQKEER------VNVALFSSFLQTFIWEK 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE------EEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cchHHHHHHHHHHHHcc
Confidence 4445566777777777777777776665554211 1233343 455588864
No 333
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.61 E-value=38 Score=31.08 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.3
Q ss_pred hHHHHH
Q 019419 130 DKKKKE 135 (341)
Q Consensus 130 ~~~~ke 135 (341)
.++...
T Consensus 119 ~~Rt~~ 124 (250)
T 2ve7_C 119 AKRTSR 124 (250)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 344333
No 334
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.60 E-value=95 Score=29.68 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019419 169 AELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI 189 (341)
..|+.+...|+.++..++.++
T Consensus 31 ~~Lq~~le~L~~KI~~LE~~v 51 (323)
T 1lwu_B 31 RSMKSVLEHLRAKMQRMEEAI 51 (323)
T ss_dssp HHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555
No 335
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.46 E-value=1.3e+02 Score=20.47 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (341)
Q Consensus 146 LikeLQsEL~ALkkELekLqerNeELEkENk 176 (341)
.++.|...++.--..+..|..+|..|+.+..
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777666777777778888877653
No 336
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.35 E-value=1.6e+02 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 164 AQSLNAELEKQNKKLVEDLVAAEA 187 (341)
Q Consensus 164 LqerNeELEkENkELqqQLa~aEa 187 (341)
+.++-++|-.+|.+|+.++.+++.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444444555555555554443
No 337
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.23 E-value=2e+02 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (341)
Q Consensus 130 ~~~~kel~EKLEesE~LikeLQsEL~ALkkELek 163 (341)
++-++-+..+++..+..+..++.++..++..+..
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~ 130 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE 130 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555555555544444444433
No 338
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.16 E-value=2.5e+02 Score=23.11 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (341)
Q Consensus 136 l~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkEL 178 (341)
+.|=++..+.=+..++..+..+.+.+..+.++...++....++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443333
No 339
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=21.12 E-value=4.1e+02 Score=25.88 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019419 169 AELEKQNKKLVEDLVAAEAKIA 190 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI~ 190 (341)
+.++.|...|..++..++.++.
T Consensus 72 ~~a~~e~~~l~~~~~~le~~l~ 93 (354)
T 3d5a_X 72 EMAKAEREALLARKEALEKELE 93 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888886644
No 340
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.98 E-value=4.4e+02 Score=23.32 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=5.1
Q ss_pred HHhhhhhhhhhh
Q 019419 217 ANKLEHSIVMTD 228 (341)
Q Consensus 217 a~KLe~s~~~~~ 228 (341)
-.+|+..+...|
T Consensus 130 ~~~L~~a~~e~e 141 (192)
T 2p22_C 130 KKKLEQNTKKLD 141 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 341
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=20.89 E-value=3.1e+02 Score=24.09 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 019419 131 KKKKEFEEKLMLSENLV---KDLQSEVF--ALKAEFVKAQSLNAELEKQN--KKLVEDLVAAEAKIA 190 (341)
Q Consensus 131 ~~~kel~EKLEesE~Li---keLQsEL~--ALkkELekLqerNeELEkEN--kELqqQLa~aEaEI~ 190 (341)
..+++|-|..+..+.+. .-|+.++. .+++++.. +-.+++++.- -+|++|+.....++.
T Consensus 185 ~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~--~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 185 ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRN--RVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566655555555533 23344444 44444442 2234444322 378888888777763
No 342
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.80 E-value=2.2e+02 Score=26.97 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019419 148 KDLQSEVFALKAEFVKA 164 (341)
Q Consensus 148 keLQsEL~ALkkELekL 164 (341)
.+|+.++..|.+++.++
T Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 250 KELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 343
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.78 E-value=3.3e+02 Score=21.86 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSEN-----LVKDLQSEVFALKAEFVKAQSLNAELE 172 (341)
Q Consensus 133 ~kel~EKLEesE~-----LikeLQsEL~ALkkELekLqerNeELE 172 (341)
++.|.++|+...+ +|...+..|.+.+..|..++.+..-|-
T Consensus 38 i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 38 VNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666665544 344444555555555544444444433
No 344
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.76 E-value=2.8e+02 Score=25.13 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019419 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (341)
Q Consensus 147 ikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL 192 (341)
+..|+.+|..|..++..+.++...+..+..+++....+-..++..+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 345
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=20.75 E-value=48 Score=31.77 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (341)
Q Consensus 133 ~kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkENkELqqQLa~aEaEI 189 (341)
+++++++|+.....+++.-..... ..+..|+.+.+.|+.++.+|+.++......|
T Consensus 6 ~~~~~~qle~~~~~ike~~~~~~~--~~I~~Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 6 VNEYSSELEKHQLYIDETVNSNIP--TNLRVLRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp ------------CTTTTTTTTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566665555544333110000 0122233344455555555555555444444
No 346
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=20.64 E-value=21 Score=29.23 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhhHHHH-HHHHhhhhhh
Q 019419 208 KFKDVQK-LIANKLEHSI 224 (341)
Q Consensus 208 ~~kdiqk-l~a~KLe~s~ 224 (341)
++.+-|| ++..||+++.
T Consensus 71 e~qKtqkal~ESKL~~~k 88 (95)
T 3n7n_E 71 SVQKNQKALYQSKLSSKD 88 (95)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3445566 7777777654
No 347
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.47 E-value=1.5e+02 Score=23.98 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 154 L~ALkkELekLqerNeELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
+.-+-.|+-.+-+..+.||.+..+.++.+..++.=+.+|+.
T Consensus 39 L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 39 LNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777778888877777777777776666664
No 348
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.23 E-value=2e+02 Score=25.76 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019419 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (341)
Q Consensus 134 kel~EKLEesE~LikeLQsEL~ALkkELekLqerNeELEkE 174 (341)
+-++|=++-.-.-+.+|+.++..|++|.+.|+...++..++
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777777777777666655544
No 349
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.16 E-value=1.6e+02 Score=28.83 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 019419 169 AELEKQNKKLVEDLVAAEAKIASLSS 194 (341)
Q Consensus 169 eELEkENkELqqQLa~aEaEI~sL~~ 194 (341)
..|+.+...|..++..++.++..|++
T Consensus 42 ~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 42 RRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444555555555555555554
Done!