Query 019420
Match_columns 341
No_of_seqs 238 out of 1152
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00171 photosystem light-ha 100.0 1.7E-97 4E-102 716.1 25.9 317 18-336 6-323 (324)
2 PLN00025 photosystem II light 100.0 1E-67 2.2E-72 499.4 17.3 217 112-338 42-258 (262)
3 PLN00187 photosystem II light- 100.0 2.4E-63 5.2E-68 474.0 15.1 202 110-336 41-285 (286)
4 PLN00098 light-harvesting comp 100.0 7.5E-62 1.6E-66 460.5 16.6 204 113-337 54-266 (267)
5 PLN00097 photosystem I light h 100.0 6.6E-61 1.4E-65 448.9 16.0 195 117-332 40-243 (244)
6 PLN00048 photosystem I light h 100.0 4.7E-61 1E-65 454.5 14.3 211 113-337 34-261 (262)
7 PLN00101 Photosystem I light-h 100.0 8.9E-61 1.9E-65 449.6 14.3 197 113-335 45-249 (250)
8 PLN00147 light-harvesting comp 100.0 4.8E-60 1E-64 445.3 19.0 204 114-337 38-251 (252)
9 PLN00099 light-harvesting comp 100.0 1.2E-58 2.6E-63 434.1 15.1 194 119-336 42-237 (243)
10 PLN00100 light-harvesting comp 100.0 1.7E-56 3.7E-61 419.1 12.8 178 118-335 32-209 (246)
11 PLN00170 photosystem II light- 100.0 9.7E-50 2.1E-54 375.5 15.3 179 119-320 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 3E-41 6.6E-46 295.0 13.3 153 132-309 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 6.2E-41 1.3E-45 308.8 14.5 159 132-317 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 8.6E-35 1.9E-39 266.9 12.2 146 146-316 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 8.9E-16 1.9E-20 146.5 7.1 70 262-331 76-152 (267)
16 PLN00101 Photosystem I light-h 99.6 1.8E-15 3.9E-20 143.3 5.9 55 262-316 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 1.1E-14 2.3E-19 138.3 5.7 53 262-314 59-111 (252)
18 PLN00170 photosystem II light- 99.5 3.4E-14 7.3E-19 134.9 5.8 56 262-317 71-126 (255)
19 PLN00171 photosystem light-ha 99.5 4E-14 8.6E-19 138.0 5.4 54 262-315 124-177 (324)
20 PLN00097 photosystem I light h 99.5 5.9E-14 1.3E-18 132.6 5.7 54 262-315 58-111 (244)
21 PLN00025 photosystem II light 99.4 8.1E-14 1.8E-18 132.9 5.6 53 262-314 67-119 (262)
22 PLN00100 light-harvesting comp 99.4 1.3E-13 2.8E-18 130.3 5.3 50 262-311 49-98 (246)
23 PLN00048 photosystem I light h 99.4 1.5E-13 3.2E-18 131.1 4.6 53 137-189 186-238 (262)
24 PLN00099 light-harvesting comp 99.4 2.9E-13 6.4E-18 127.9 6.3 51 262-312 58-108 (243)
25 PLN00187 photosystem II light- 99.4 4.3E-13 9.3E-18 129.2 5.2 53 137-189 211-263 (286)
26 PLN00089 fucoxanthin-chlorophy 99.4 6.6E-13 1.4E-17 123.1 5.8 52 138-189 153-205 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.3 2.9E-12 6.3E-17 112.3 4.7 50 135-184 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 5.3E-10 1.2E-14 103.4 5.2 44 138-185 142-192 (202)
29 PHA02337 putative high light i 98.0 6E-06 1.3E-10 56.7 3.2 28 288-315 4-31 (35)
30 PLN00084 photosystem II subuni 97.7 2.3E-05 5E-10 71.2 3.6 47 282-328 131-178 (214)
31 PLN00014 light-harvesting-like 97.4 9.7E-05 2.1E-09 69.8 3.1 37 286-322 159-195 (250)
32 PHA02337 putative high light i 96.9 0.00079 1.7E-08 46.3 2.8 26 162-187 3-28 (35)
33 PLN00014 light-harvesting-like 95.1 0.01 2.3E-07 56.4 1.6 30 162-191 160-189 (250)
34 PLN00084 photosystem II subuni 90.8 0.15 3.2E-06 46.9 2.1 34 158-191 132-166 (214)
35 PLN02449 ferrochelatase 47.2 13 0.00028 39.2 2.3 22 296-317 463-484 (485)
36 PHA00649 hypothetical protein 26.0 83 0.0018 25.3 3.2 31 153-184 31-68 (83)
37 PF14672 LCE: Late cornified e 24.8 33 0.00073 28.0 0.8 10 18-27 23-32 (83)
No 1
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.7e-97 Score=716.14 Aligned_cols=317 Identities=81% Similarity=1.348 Sum_probs=295.0
Q ss_pred ccccCC-CCCchhHHHHhcCccccccccCCCCcchhhhhHhhhhhhhhhcccchhHHHHhhcChhhHHHHHHHHHhhHHh
Q 019420 18 SCCSSS-SGGCSLRKILALKPSRKNLLLKPKSSLVCKASWQELAGVLVFSAIPFTAVKAIANSPLGELLQNRMLETKKAA 96 (341)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (341)
||-+|| ++.-++++++++++|++.. +++.+++|||||||+|||+||||+|||++|+||||+||++||+|++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (324)
T PLN00171 6 SSSSSSFSGQHSLPRILASKPRRRRA--TRRPASSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAA 83 (324)
T ss_pred cccccccccccccchhhccccccccc--cCCCCccchhhHHhhhheeeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHH
Confidence 444444 3445689999999999988 7778999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHh
Q 019420 97 LQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGA 176 (341)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAv 176 (341)
+++++++++.++++|+.+.||+++|++||||+++++|+||||++|||||||||||++||++++||||+|||||||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~ 163 (324)
T PLN00171 84 VEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAA 163 (324)
T ss_pred HHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC
Q 019420 177 LGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG 256 (341)
Q Consensus 177 vG~lvpEll~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g 256 (341)
+|+++||++++.|.+++++|+||++|+..+++..++|+++|+..+++.+.+..++++|+++|+++|++|+.++...++.+
T Consensus 164 ~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g 243 (324)
T PLN00171 164 LGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG 243 (324)
T ss_pred hhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc
Confidence 99999999988888888889999999988888888899988765666788999999999999999999998876555556
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhh
Q 019420 257 IFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (341)
Q Consensus 257 ~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~ 336 (341)
.+.|||..||||.+|||||+++|+++++++|++|||||||||+||+||++|+.+||+||++||.+|++||+||||++++.
T Consensus 244 ~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 244 IYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred ccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 67899999999988999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1e-67 Score=499.38 Aligned_cols=217 Identities=52% Similarity=0.932 Sum_probs=193.9
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccccc
Q 019420 112 NESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAF 191 (341)
Q Consensus 112 ~~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~ 191 (341)
+.+.||+++|++||||++.++|+||||++||||||||+||++||++++||||+|||||||||||++||++||+++..| +
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g-~ 120 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG-V 120 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC-c
Confidence 567899999999999988889999999999999999999999999999999999999999999999999999988766 4
Q ss_pred ccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCC
Q 019420 192 HLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALF 271 (341)
Q Consensus 192 ~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gF 271 (341)
.|+++.||++|...++...++|++.|.+. +.+.+..+.++|+++|+.+|.+|+.+. +.++ ..|..||||+ |
T Consensus 121 ~~~~~~W~~ag~~~~~~gg~~y~~~p~~~--~~~~~~a~~~~qv~lmg~~E~~r~~~~----~~~~--~~d~~yPG~~-F 191 (262)
T PLN00025 121 KFGEAVWFKAGAQIFSEGGLDYLGNPSLV--HAQSILAIWACQVVLMGAVEGYRVNGG----PLGE--GLDPLYPGGS-F 191 (262)
T ss_pred CcCcccccccccccccccccccccCcccc--hhhhHHHHHHHHHHHHHHHHHhcccCC----cccc--cccCcCCccc-C
Confidence 57788999999877777788999887643 346667788899999999999998652 2222 2367899997 9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhhhh
Q 019420 272 DPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSI 338 (341)
Q Consensus 272 DPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~~~ 338 (341)
|||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||++++++.+
T Consensus 192 DPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~ 258 (262)
T PLN00025 192 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNF 258 (262)
T ss_pred CccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987544
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.4e-63 Score=473.99 Aligned_cols=202 Identities=42% Similarity=0.724 Sum_probs=174.0
Q ss_pred hcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHH--------------------------------
Q 019420 110 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMA-------------------------------- 157 (341)
Q Consensus 110 ~~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~-------------------------------- 157 (341)
.+..+.+|+++|++|||+. ++|+||||++|||||||||||++||+.
T Consensus 41 ~~~~~~~~~~~r~~w~p~~--~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
T PLN00187 41 AKKKSSKVGADRPLWFPGA--KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKS 118 (286)
T ss_pred cccCccCCCCCccccCCCC--CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccc
Confidence 3346779999999999764 699999999999999999999999886
Q ss_pred -----------HHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhhcccccCCCcccccCCCcccccchhh
Q 019420 158 -----------FQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQG 226 (341)
Q Consensus 158 -----------~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~ 226 (341)
++||||+|||||||||||++||++||+++ |. .||++|...+.+. .+|++.|.. ..
T Consensus 119 ~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~------~W~~aG~~~~~~g-~~y~g~~~p-----~~ 184 (286)
T PLN00187 119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELVDG-SSYLGQPLP-----FS 184 (286)
T ss_pred cccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC------ccccccccccccc-ccccccccc-----hh
Confidence 69999999999999999999999999973 32 5999997654332 247766531 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019420 227 VIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYI 306 (341)
Q Consensus 227 i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~a 306 (341)
+..+.++|+++|+++|.+|+.+. + ..|..||||++||||||.+|+++++++|+||||||||||+|++||++
T Consensus 185 ~~~l~~iqvllmG~~E~~R~~~~---~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~v 255 (286)
T PLN00187 185 ITTLIWIEVLVIGYIEFQRNAEL---D------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAV 255 (286)
T ss_pred HHHHHHHHHHHHHHHHhhhccCC---C------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56678999999999999997642 1 23567999988999999999999999999999999999999999999
Q ss_pred hhhccCCCchhhhhhhhCCcchhhHHHHhh
Q 019420 307 QAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (341)
Q Consensus 307 Q~~VTGkGPlenL~~hladP~~~N~~~~~~ 336 (341)
|+++||+||++||.+||+||+||||++++.
T Consensus 256 q~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 256 QAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 999999999999999999999999999864
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=7.5e-62 Score=460.54 Aligned_cols=204 Identities=38% Similarity=0.705 Sum_probs=173.5
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 019420 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (341)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~ 192 (341)
...+|+++|++|+|+. ++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|.
T Consensus 54 ~~~~~~~~r~~w~Pg~--~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-- 129 (267)
T PLN00098 54 VCEPLPPDRPLWFPGS--SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-- 129 (267)
T ss_pred ccccCCCCccccCCCC--CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc--
Confidence 4567999999999875 599999999999999999999999999999999999999999999999999999887765
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC-------ccC-CCCCC
Q 019420 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG-------IFL-PGDIN 264 (341)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g-------~~~-pGD~~ 264 (341)
+..+.||++|.. +|++.| ..+.++|+++|+++|.+|+.++...+..+ ... .+|..
T Consensus 130 ~~~~~w~~Ag~~-------~~~~~~----------~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~ 192 (267)
T PLN00098 130 IENFSWYDAGAR-------EYFADP----------TTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVG 192 (267)
T ss_pred ccccccccccch-------hhccCc----------hHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCC
Confidence 345679988753 344433 13567899999999999987653221111 011 23668
Q ss_pred CCCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhhh
Q 019420 265 YPGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (341)
Q Consensus 265 yPGg~gFDPLgL~k-dpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~~ 337 (341)
||||++||||||.+ |+++++++|+||||||||||+||+||++|+.+||+||++||.+||+||+||||+++++.
T Consensus 193 yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999999999975 89999999999999999999999999999999999999999999999999999999875
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=6.6e-61 Score=448.93 Aligned_cols=195 Identities=39% Similarity=0.628 Sum_probs=166.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcc
Q 019420 117 YGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEP 196 (341)
Q Consensus 117 y~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p 196 (341)
.+++|++|||+. ++|+||||++||||||||+||++|+++++|||++|||||||||||++||++||+++..|.. ..+
T Consensus 40 ~~~~R~~w~Pg~--~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~--~~p 115 (244)
T PLN00097 40 AAADRPTWLPGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA--DLP 115 (244)
T ss_pred cCCCCcccCCCC--CCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc--cCC
Confidence 457899999764 5999999999999999999999999999999999999999999999999999999877753 346
Q ss_pred hhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccC-----CC----CccCCCCCCCCC
Q 019420 197 VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALE-----PL----GIFLPGDINYPG 267 (341)
Q Consensus 197 ~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~-----p~----g~~~pGD~~yPG 267 (341)
.||++|... .|+.. ...+..+|+++|+.+|.+|+.++...+ |+ ....++|..|||
T Consensus 116 ~W~~Ag~~~------~~~~~----------~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPg 179 (244)
T PLN00097 116 NWIDAAKWD------GYWAG----------AGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPK 179 (244)
T ss_pred ccccCCcch------hcccc----------chhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCC
Confidence 899987431 13221 123567788889999999988764322 11 123467889999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHH
Q 019420 268 GALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLL 332 (341)
Q Consensus 268 g~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~ 332 (341)
+. ||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+||||+
T Consensus 180 g~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 180 GL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 95 99999999999999999999999999999999999999999999999999999999999986
No 6
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=4.7e-61 Score=454.49 Aligned_cols=211 Identities=42% Similarity=0.678 Sum_probs=175.0
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHH------HHHHHHHHHHhhhhHHHHHhhhhhhhhhhh
Q 019420 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM------AFQKYFNFEILHARWAMLGALGALVPEVLD 186 (341)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe------~~~~~REAELkHGR~AMLAvvG~lvpEll~ 186 (341)
...+|+++|++|+++. ++|+||||++|||||||||||+ ||+ +.+|+|++|||||||||||++||++||+++
T Consensus 34 ~~~~~~~~r~~w~p~~--~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 34 PPAKQGADRQLWFASK--QSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCCCceecCCC--CCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 4567889999999653 6999999999999999999998 443 568999999999999999999999999998
Q ss_pred cccccccC-cchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------c
Q 019420 187 MVGAFHLV-EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------I 257 (341)
Q Consensus 187 ~~G~~~f~-~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g--------~ 257 (341)
+.|.+... ...||++|.... ....+|++.| ..+.++|+++|+++|++|+.++...++.+ .
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p----------~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIPP-AGTYDYWADP----------YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred cCCcccccccccccccccccc-ccccccccch----------hHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 77765332 236999886432 2345676654 23567899999999999988754322211 0
Q ss_pred cC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHh
Q 019420 258 FL--PGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (341)
Q Consensus 258 ~~--pGD~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~ 335 (341)
.. .+|..||||++||||||++|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 11 2477899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 019420 336 KS 337 (341)
Q Consensus 336 ~~ 337 (341)
..
T Consensus 260 ~~ 261 (262)
T PLN00048 260 KF 261 (262)
T ss_pred cc
Confidence 64
No 7
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=8.9e-61 Score=449.60 Aligned_cols=197 Identities=40% Similarity=0.779 Sum_probs=167.7
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 019420 113 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (341)
Q Consensus 113 ~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~ 192 (341)
.+.++.++|+.|+|.. ++|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||+++..|.+
T Consensus 45 ~~~~~~~~r~~W~P~~--~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWLPGL--ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccCCCC--CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4567778999999764 5999999999999999999999999999999999999999999999999999999887764
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------ccCCCCCC
Q 019420 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------IFLPGDIN 264 (341)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g--------~~~pGD~~ 264 (341)
..|.||++|.. +|+..+ ..+.++|+++|+.+|++|+.++...+..+ ...+||..
T Consensus 122 -~~p~w~~ag~~-------~~~~~~----------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~ 183 (250)
T PLN00101 122 -NAPQWYDAGKA-------EYFASS----------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVG 183 (250)
T ss_pred -CCCccccccch-------hhcccc----------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCcccc
Confidence 34689998753 243322 23567788899999999988765322211 12368899
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHh
Q 019420 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (341)
Q Consensus 265 yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~ 335 (341)
||||. ||||||+++ +++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++++
T Consensus 184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~ 249 (250)
T PLN00101 184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 249 (250)
T ss_pred CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhc
Confidence 99995 999999876 3799999999999999999999999999999999999999999999999986
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=4.8e-60 Score=445.32 Aligned_cols=204 Identities=41% Similarity=0.725 Sum_probs=170.8
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccccccc
Q 019420 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193 (341)
Q Consensus 114 ~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f 193 (341)
...++++|++|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++..|.+.
T Consensus 38 ~~~~~~~R~~wlP~~--~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~- 114 (252)
T PLN00147 38 NPVVAQERPTWLPGL--DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN- 114 (252)
T ss_pred cccCCCCccccCCCC--CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC-
Confidence 357789999999775 59999999999999999999999999999999999999999999999999999988777533
Q ss_pred CcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC---cc-------CCCCC
Q 019420 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG---IF-------LPGDI 263 (341)
Q Consensus 194 ~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g---~~-------~pGD~ 263 (341)
.|.||++|...+ ++ . ....++++|+++|+.+|..|+.++...+... .+ ..-|.
T Consensus 115 -~p~w~~ag~~~~-----~~-~----------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~ 177 (252)
T PLN00147 115 -LPVWYEAGAVKF-----EF-A----------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEP 177 (252)
T ss_pred -Ccchhhcccchh-----cc-c----------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCC
Confidence 467998774332 11 1 1134568899888889999987654321110 00 01245
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhhh
Q 019420 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (341)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~~ 337 (341)
.||||++||||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+||+||+||||+++++.
T Consensus 178 ~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 178 GYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998753
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.2e-58 Score=434.09 Aligned_cols=194 Identities=41% Similarity=0.725 Sum_probs=160.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchh
Q 019420 119 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVW 198 (341)
Q Consensus 119 ~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W 198 (341)
++|..|+|.. ++|+||||++|||+||||+||++++++++||||+|||||||||||++|+++||+++. +.|
T Consensus 42 ~~~~~w~P~~--~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------~~w 111 (243)
T PLN00099 42 TMSADWMPGQ--PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------GNW 111 (243)
T ss_pred cccccccCCC--CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------CCc
Confidence 5566788654 499999999999999999999999999999999999999999999999999998642 247
Q ss_pred hhhcc-cccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 019420 199 WRVGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (341)
Q Consensus 199 ~~aG~-~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~ 277 (341)
++++. ..+.+...+|++.|. ....++.++++|+++++.+|.+|+... .+++..|||| .|||||+.
T Consensus 112 ~~a~~~~~~~~g~~~~~g~~~----~~~~l~~~~~iqvl~ig~~E~~r~~~~---------~~~~~~yPGd-~FDPlGl~ 177 (243)
T PLN00099 112 VKAQEWAAIPGGQATYLGNPV----PWGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYS 177 (243)
T ss_pred ccccchhccCcchhhhccCcc----chhhHHHHHHHHHHHHHHHHHHhhccC---------CCCCCcCCCC-cCCccccc
Confidence 76653 123333445665542 123467788899888888898875321 1234579999 79999999
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhCCcchhhHHHHhh
Q 019420 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (341)
Q Consensus 278 kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~-~VTGkGPlenL~~hladP~~~N~~~~~~ 336 (341)
+|+++++++|+||||||||||+||+||++|+ ++||+||++||.+||+||+|||+++.+.
T Consensus 178 kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~ 237 (243)
T PLN00099 178 KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 237 (243)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeec
Confidence 9999999999999999999999999999999 6799999999999999999999988763
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.7e-56 Score=419.10 Aligned_cols=178 Identities=37% Similarity=0.651 Sum_probs=151.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcch
Q 019420 118 GEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPV 197 (341)
Q Consensus 118 ~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~ 197 (341)
..+|++|+|.. ++|+||||++||||||||+||++|+++++||||+|||||||||||++|+++||+++ + |.
T Consensus 32 ~~~r~~W~P~~--~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~------~--P~ 101 (246)
T PLN00100 32 ARARPMWYPGA--TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG------L--PK 101 (246)
T ss_pred cCCCcccCCCC--CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc------c--cc
Confidence 46788888553 59999999999999999999999999999999999999999999999999999854 2 35
Q ss_pred hhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCC
Q 019420 198 WWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLS 277 (341)
Q Consensus 198 W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~ 277 (341)
||++|... |.. .+..++++|+++|+.+|.+|+.++.. +|+.++||+++|||||++
T Consensus 102 w~~ag~~~-------~~~----------~~~~l~~iqill~g~~E~~r~~~~~~--------~g~~~~pg~~~FDPLGl~ 156 (246)
T PLN00100 102 FWEAGAEK-------YGL----------DLQTLVLIQVVVMAVLEAARYRGFMK--------TGESGVLSFFPFDPTGMD 156 (246)
T ss_pred hhhcchhh-------hcc----------chhHHHHHHHHHHHHHhhhccccccc--------ccccCCCCCCCCCccccc
Confidence 88876432 210 12346788999988899998876421 244557888899999996
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHh
Q 019420 278 KDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMV 335 (341)
Q Consensus 278 kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~ 335 (341)
+ +++|+||||||||||+||+||++|+++||+||++||.+|++||+||||+++.
T Consensus 157 ~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 157 S-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred H-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 3 6899999999999999999999999999999999999999999999998864
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=9.7e-50 Score=375.50 Aligned_cols=179 Identities=37% Similarity=0.615 Sum_probs=145.7
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccC
Q 019420 119 EERPRWLGPIP----YDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLV 194 (341)
Q Consensus 119 ~~r~~wl~~~~----~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~ 194 (341)
.+|+.|++... ...|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++ |
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g----- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G----- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C-----
Confidence 56667776542 257999999999999999999999999999999999999999999999999999864 2
Q ss_pred cchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCC--------------ccCC
Q 019420 195 EPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLG--------------IFLP 260 (341)
Q Consensus 195 ~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g--------------~~~p 260 (341)
..||++|... .++ .| ..+.++..+|+++|+++|.+|+.++...+... ....
T Consensus 122 -~~w~~aG~~~------~~~-~p-------~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~ 186 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANAT 186 (255)
T ss_pred -CChhhCCccc------ccc-Cc-------cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccC
Confidence 2599988642 111 11 12345778899999999999998765322110 0124
Q ss_pred CCCCCCCCCCCCCCCCCC---------CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh
Q 019420 261 GDINYPGGALFDPLNLSK---------DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL 320 (341)
Q Consensus 261 GD~~yPGg~gFDPLgL~k---------dpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~ 320 (341)
||..||||..||||||++ |+++++++|+||||||||||+|++||++|+ .||++|++||.
T Consensus 187 g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 187 GLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred CCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 677899997799999985 789999999999999999999999999999 79999999973
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=3e-41 Score=295.02 Aligned_cols=153 Identities=44% Similarity=0.671 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccc-cccC-cchhhhhcccccCCC
Q 019420 132 YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA-FHLV-EPVWWRVGYSKLQGE 209 (341)
Q Consensus 132 ~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~-~~f~-~p~W~~aG~~~~~g~ 209 (341)
+|+||||+++||+||||+||++++ +++|||++|||||||||||++|++++|+++..+. ..+. .+.|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 489999999999999999999887 9999999999999999999999999999754321 1111 122433210
Q ss_pred cccccCCCcccccchhhHHHHHHHHHHHhhh-hhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 019420 210 TLDYLGIPGLHLAGSQGVIVIAICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKV 288 (341)
Q Consensus 210 ~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g-~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lkl 288 (341)
+ + ++..+++|++++++ +|.++.......+..+ ..+..|||+++|||+|+.+|+++++++|+
T Consensus 74 -~-----~---------~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~---~~~~~~pG~~~~dplgl~~~~~~~~~~~~ 135 (156)
T PF00504_consen 74 -I-----P---------VPAAGWAQILLFIGALEPWRQQGVPEPGEGG---GKDGRYPGDLGFDPLGLAKDPEEKEFMQL 135 (156)
T ss_dssp -S-----S---------SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS---SSSSSSSSSSSSSTSSTSSSCHSHHCHHH
T ss_pred -h-----h---------hhhHHHHHHHHHHhHhhhhhcccccCCcccc---cccccCccccccchhhhhhhhhhhHHHHH
Confidence 0 0 22345556665554 5888766532211111 23457999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhh
Q 019420 289 KEIKNGRLAMVAWLGFYIQAA 309 (341)
Q Consensus 289 kEIKNGRLAMlAilGf~aQ~~ 309 (341)
+|||||||||+||+|+++|+.
T Consensus 136 ~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 136 AELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=308.85 Aligned_cols=159 Identities=29% Similarity=0.352 Sum_probs=117.7
Q ss_pred CCCCCCCCCCCCCCCcCCCCCC-CHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhhcccccCCCc
Q 019420 132 YPSYLTGELPGDYGFDVAGLSK-DPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGET 210 (341)
Q Consensus 132 ~P~yLdGs~PGD~GFDPLGLs~-dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W~~aG~~~~~g~~ 210 (341)
.|+.|||+ .||+||||+||++ ++++++|||++|||||||||||++|+++||.++.+|.+. +
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~-----~------------ 107 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY-----S------------ 107 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc-----c------------
Confidence 57789999 9999999999985 678899999999999999999999999999977665320 0
Q ss_pred ccccCCCcccccchhhHHHHH-HHHHHHhhh-hhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCC-CCCHHHHHHHH
Q 019420 211 LDYLGIPGLHLAGSQGVIVIA-ICQALLMVG-PECARYCGIEALEPLGIFLPGDINYPGGALFDPLNL-SKDPVAFEELK 287 (341)
Q Consensus 211 l~yl~~P~~~~a~~~~i~~i~-~~Qi~l~~g-~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL-~kdpe~~~~lk 287 (341)
+.+.|+. ....+.++..+ ++|++++++ +|....... . .....+ ..||||++|||||| .+|+++++++|
T Consensus 108 --~~~~p~~-~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~----~-~~~~~~-~~~PGd~gfdplgl~~~d~~~~~~~~ 178 (209)
T PLN00089 108 --FAAIPKT-IDAHDALLKSGAMIQIFAWIGFVDLAVSAPA----A-AAAAEF-DRTPGDFGFDLLALYPKDAAKMEKKK 178 (209)
T ss_pred --ccccccH-HHHHHhhcccccHHHHHHHHHHHHHHHhhcc----c-cccccC-CCCCCCcCccccccCCCCHHHHHHHH
Confidence 0111110 01111222222 568887665 485322110 0 001123 36899999999999 46899999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhccCCCchh
Q 019420 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 317 (341)
Q Consensus 288 lkEIKNGRLAMlAilGf~aQ~~VTGkGPle 317 (341)
++|||||||||+||+||++|+++||+++++
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999998763
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=8.6e-35 Score=266.95 Aligned_cols=146 Identities=27% Similarity=0.353 Sum_probs=104.6
Q ss_pred CcCCCCC--CCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhhcccccCCCcccccCCCcccccc
Q 019420 146 FDVAGLS--KDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAG 223 (341)
Q Consensus 146 FDPLGLs--~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~ 223 (341)
|||+||+ +|+++++|||++|||||||||||++|++++|.. ++|++. ..+.+.. |-++|... ..
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g-----~~~Pg~-------~~~~g~~--~~~~p~~~-~a 111 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAG-----IRLPGD-------IDYSGTS--FSDIPNGF-AA 111 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeeccc-----ccCCCc-------ccccccc--ccccccch-hh
Confidence 9999997 478999999999999999999999999999972 233311 1111111 22222211 12
Q ss_pred hhhHHHHHHHHHHHhhhh-hhhhhccccccCCCC-ccCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHH
Q 019420 224 SQGVIVIAICQALLMVGP-ECARYCGIEALEPLG-IFLPGDINYPG--GALFDPLNLSKDPVAFEELKVKEIKNGRLAMV 299 (341)
Q Consensus 224 ~~~i~~i~~~Qi~l~~g~-E~~r~~g~~~~~p~g-~~~pGD~~yPG--g~gFDPLgL~kdpe~~~~lklkEIKNGRLAMl 299 (341)
...++..+++||++++++ |..+.... .+ .+.|||.. || |++|||+ |+++++++|+|||||||||||
T Consensus 112 ~~~vp~~g~~qi~~~ig~~E~~~~~~~-----~~~~~~pGd~~-~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMi 181 (202)
T PLN00120 112 LDAIPTAGLLQILAFIGFLELAVMKDI-----TGEGEFVGDFR-NGYIDFGWDSF----DEETKLKKRAIELNQGRAAQM 181 (202)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccc-----ccCCCCCCccC-CCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH
Confidence 345666789999988775 97654432 11 23345431 22 4556665 789999999999999999999
Q ss_pred HHHHHHHhhhccCCCch
Q 019420 300 AWLGFYIQAAFTGKGPV 316 (341)
Q Consensus 300 AilGf~aQ~~VTGkGPl 316 (341)
||+||++|+.++|+.|+
T Consensus 182 ai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 182 GILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHHccCCCcC
Confidence 99999999999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.61 E-value=8.9e-16 Score=146.53 Aligned_cols=70 Identities=30% Similarity=0.445 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhh-------hhhhCCcchhhH
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNL-------LDHISDPLHNNL 331 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL-------~~hladP~~~N~ 331 (341)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.|++++. .+++.||....+
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~ 152 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFV 152 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHH
Confidence 3458999999999999999999999999999999999999999999999998877643 235677754433
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.57 E-value=1.8e-15 Score=143.25 Aligned_cols=55 Identities=35% Similarity=0.572 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPl 316 (341)
|..+|||++||||||++|+++++++|++|||||||||+|++|+++|+++|+.|++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.52 E-value=1.1e-14 Score=138.25 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkG 314 (341)
|..+|||++||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 45689999999999999999999999999999999999999999999998765
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.48 E-value=3.4e-14 Score=134.90 Aligned_cols=56 Identities=36% Similarity=0.571 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchh
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQ 317 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPle 317 (341)
|..+|||++||||+|.+|+++++++|.+||+|||+||+|++|+++|+++||...++
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 34689999999999999999999999999999999999999999999999875443
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.47 E-value=4e-14 Score=138.01 Aligned_cols=54 Identities=39% Similarity=0.454 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGP 315 (341)
|..+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 345799999999999999999999999999999999999999999999886654
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.46 E-value=5.9e-14 Score=132.57 Aligned_cols=54 Identities=31% Similarity=0.397 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGP 315 (341)
|...|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 335799999999999999999999999999999999999999999999998764
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.44 E-value=8.1e-14 Score=132.88 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCC
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKG 314 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkG 314 (341)
|..+|||++||||||++||++++++|..||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 33578999999999999999999999999999999999999999999998654
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.42 E-value=1.3e-13 Score=130.29 Aligned_cols=50 Identities=36% Similarity=0.485 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VT 311 (341)
|..+|||++||||||++|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 44689999999999999999999999999999999999999999999975
No 23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.41 E-value=1.5e-13 Score=131.15 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=48.8
Q ss_pred CCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 019420 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (341)
Q Consensus 137 dGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G 189 (341)
|..+|||++|||+||++|+++++++|..||||||+||+|++||++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999976544
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.40 E-value=2.9e-13 Score=127.91 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019420 262 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (341)
Q Consensus 262 D~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTG 312 (341)
|..+|||++||||+|++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 456899999999999999999999999999999999999999999999753
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.37 E-value=4.3e-13 Score=129.24 Aligned_cols=53 Identities=36% Similarity=0.372 Sum_probs=48.9
Q ss_pred CCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 019420 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (341)
Q Consensus 137 dGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G 189 (341)
+..+|||++|||+||++|+++++++|+.||||||+||+|++||++|++++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44699999999999999999999999999999999999999999999986544
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.36 E-value=6.6e-13 Score=123.11 Aligned_cols=52 Identities=31% Similarity=0.482 Sum_probs=47.3
Q ss_pred CCCCCCCCCcCCCC-CCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccc
Q 019420 138 GELPGDYGFDVAGL-SKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVG 189 (341)
Q Consensus 138 Gs~PGD~GFDPLGL-s~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G 189 (341)
+.+|||+||||+|| .+|+++++++|..||||||+||+|++|+++||+++..|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999 46899999999999999999999999999999976443
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.28 E-value=2.9e-12 Score=112.25 Aligned_cols=50 Identities=38% Similarity=0.499 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhh
Q 019420 135 YLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEV 184 (341)
Q Consensus 135 yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEl 184 (341)
+.++.+|||.+|||+|+.+|++...++|.+||+|||.||+|++|++++|.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45688999999999999989999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.97 E-value=5.3e-10 Score=103.36 Aligned_cols=44 Identities=36% Similarity=0.498 Sum_probs=37.4
Q ss_pred CCCCCC-------CCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhh
Q 019420 138 GELPGD-------YGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL 185 (341)
Q Consensus 138 Gs~PGD-------~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll 185 (341)
|.+||| .||||+ |+++.+++|..||||||+||+|++|++++|++
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l 192 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQL 192 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456664 556654 78899999999999999999999999999986
No 29
>PHA02337 putative high light inducible protein
Probab=97.99 E-value=6e-06 Score=56.67 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhccCCCc
Q 019420 288 VKEIKNGRLAMVAWLGFYIQAAFTGKGP 315 (341)
Q Consensus 288 lkEIKNGRLAMlAilGf~aQ~~VTGkGP 315 (341)
..|+-||||||+|+...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999874
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.74 E-value=2.3e-05 Score=71.20 Aligned_cols=47 Identities=32% Similarity=0.406 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcc-CCCchhhhhhhhCCcch
Q 019420 282 AFEELKVKEIKNGRLAMVAWLGFYIQAAFT-GKGPVQNLLDHISDPLH 328 (341)
Q Consensus 282 ~~~~lklkEIKNGRLAMlAilGf~aQ~~VT-GkGPlenL~~hladP~~ 328 (341)
...|.|..|+.||||||+||+--++-|++| |+||++++...-.-|..
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~ 178 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVI 178 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcch
Confidence 456788889999999999999999999999 99999998766555543
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.42 E-value=9.7e-05 Score=69.85 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhh
Q 019420 286 LKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDH 322 (341)
Q Consensus 286 lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~h 322 (341)
+...|+-|||+|||||+..++-+++||+|.+.++...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4568999999999999999999999999999988543
No 32
>PHA02337 putative high light inducible protein
Probab=96.93 E-value=0.00079 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.3
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhc
Q 019420 162 FNFEILHARWAMLGALGALVPEVLDM 187 (341)
Q Consensus 162 REAELkHGR~AMLAvvG~lvpEll~~ 187 (341)
..+|..|||+||++++-.+..|+++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tG 28 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTG 28 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 36999999999999999999999754
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.07 E-value=0.01 Score=56.39 Aligned_cols=30 Identities=33% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHhhhhHHHHHhhhhhhhhhhhccccc
Q 019420 162 FNFEILHARWAMLGALGALVPEVLDMVGAF 191 (341)
Q Consensus 162 REAELkHGR~AMLAvvG~lvpEll~~~G~~ 191 (341)
.++|+.|||+||+|++-.++.|+++.-|.+
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 379999999999999999999998766543
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=90.85 E-value=0.15 Score=46.92 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhhhhhh-ccccc
Q 019420 158 FQKYFNFEILHARWAMLGALGALVPEVLD-MVGAF 191 (341)
Q Consensus 158 ~~~~REAELkHGR~AMLAvvG~lvpEll~-~~G~~ 191 (341)
.+.-+..|+.+||+|||+++-.++.|+++ .-|.+
T Consensus 132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 44455689999999999999999999987 55543
No 35
>PLN02449 ferrochelatase
Probab=47.23 E-value=13 Score=39.23 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhccCCCchh
Q 019420 296 LAMVAWLGFYIQAAFTGKGPVQ 317 (341)
Q Consensus 296 LAMlAilGf~aQ~~VTGkGPle 317 (341)
+||+||+.+++-++++|+||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
No 36
>PHA00649 hypothetical protein
Probab=25.97 E-value=83 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhhhh-------HHHHHhhhhhhhhh
Q 019420 153 KDPMAFQKYFNFEILHAR-------WAMLGALGALVPEV 184 (341)
Q Consensus 153 ~dpe~~~~~REAELkHGR-------~AMLAvvG~lvpEl 184 (341)
.+|+....|| +.+.||| -.||+++|.++..+
T Consensus 31 ~~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3777777777 4678887 36899999887765
No 37
>PF14672 LCE: Late cornified envelope
Probab=24.83 E-value=33 Score=28.04 Aligned_cols=10 Identities=90% Similarity=1.893 Sum_probs=6.7
Q ss_pred ccccCCCCCc
Q 019420 18 SCCSSSSGGC 27 (341)
Q Consensus 18 ~~~~~~~~~~ 27 (341)
+||.++||||
T Consensus 23 sCC~~ssGgC 32 (83)
T PF14672_consen 23 SCCGSSSGGC 32 (83)
T ss_pred ccccCCCCCc
Confidence 6777666666
Done!