Query 019420
Match_columns 341
No_of_seqs 238 out of 1152
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 5.5E-68 1.9E-72 493.5 18.9 221 109-339 9-229 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.7E-62 5.9E-67 458.0 8.5 195 115-335 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 7.1E-60 2.4E-64 446.8 -2.2 201 114-336 57-267 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.1E-58 3.6E-63 440.2 4.5 208 115-336 50-274 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 5.6E-59 1.9E-63 437.2 -0.3 196 114-336 45-249 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 8.9E-55 3E-59 406.6 6.6 193 121-337 45-239 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 1.3E-13 4.5E-18 128.2 6.7 49 264-312 39-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 1.3E-14 4.4E-19 136.3 -0.9 53 264-316 69-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 3.8E-14 1.3E-18 134.4 -0.4 53 264-316 80-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 3.1E-13 1E-17 126.4 5.1 51 139-190 172-222 (243)
11 2wsc_3 LHCA3, type II chloroph 99.3 3.2E-13 1.1E-17 128.4 1.6 54 137-190 200-253 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 4.7E-13 1.6E-17 125.1 0.2 49 264-312 61-109 (241)
13 3nrt_A Putative ryanodine rece 21.1 58 0.002 26.1 2.7 23 154-176 23-47 (103)
14 2dpr_A CON-T(K7GLA); conantoxi 20.2 59 0.002 19.9 1.9 15 155-169 6-20 (26)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=5.5e-68 Score=493.54 Aligned_cols=221 Identities=51% Similarity=0.898 Sum_probs=196.9
Q ss_pred hhcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019420 109 QARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMV 188 (341)
Q Consensus 109 ~~~~~~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~ 188 (341)
.+.+.+.||+++|++||||++.++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..
T Consensus 9 ~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~ 88 (232)
T 2bhw_A 9 VASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRN 88 (232)
T ss_dssp -CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccC
Confidence 34457889999999999998778999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCC
Q 019420 189 GAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGG 268 (341)
Q Consensus 189 G~~~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg 268 (341)
| ++|+++.||++|...+.+..++|+++|.+. +.|.+.+++++|+++|+.+|.+|+.+ ++.++ ..|..||||
T Consensus 89 G-~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~--~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g~--~~d~~~Pg~ 159 (232)
T 2bhw_A 89 G-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLV--HAQSILAIWATQVILMGAVEGYRIAG----GPLGE--VVDPLYPGG 159 (232)
T ss_dssp T-CCCSCCSGGGSGGGGGSTTCEEGGGCTTSE--EECCHHHHHHHHHHHHHHHHHHHHHE----ETTEE--CSSSSCCCT
T ss_pred C-cCCcccccccccchhccccchhcccCcchh--hHHHHHHHHHHHHHHHHHHHHHhhcc----Ccccc--cccccCCCc
Confidence 7 578889999999877777778899888643 45777888999999988899998765 12222 246679999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhhhhc
Q 019420 269 ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVKSIA 339 (341)
Q Consensus 269 ~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~~~~ 339 (341)
+ |||||+.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+|++||+|||++++++.+.
T Consensus 160 ~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~ 229 (232)
T 2bhw_A 160 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFV 229 (232)
T ss_dssp T-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTC
T ss_pred c-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhc
Confidence 7 999999999999999999999999999999999999999999999999999999999999999987654
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.7e-62 Score=458.02 Aligned_cols=195 Identities=42% Similarity=0.707 Sum_probs=133.8
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHH--------------------------------------
Q 019420 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPM-------------------------------------- 156 (341)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe-------------------------------------- 156 (341)
.|++++|++|||+. ++|+|||||+|||||||||||++|||
T Consensus 5 ~~~~~~r~~w~pg~--~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWYPGA--KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCCC--CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 57778999999864 59999999999999999999999987
Q ss_pred -----HHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhhhcccccCCCcccccCCCcccccchhhHHHHH
Q 019420 157 -----AFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIA 231 (341)
Q Consensus 157 -----~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~ 231 (341)
+++||||+|||||||||||++||++||+++ | ..||++|...+.+ .++|++.|.. +.+..++
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g------~~W~~aG~~~~~~-g~~y~g~p~~-----~~i~~l~ 148 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--G------ITWQDAGKVELIE-GSSYLGQPLP-----FSMTTLI 148 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------CCTTTHHHHHHHS-CEEETTEEEC-----CCHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--C------ccccccccccccc-ccccccCccc-----hhhHHHH
Confidence 378999999999999999999999999974 2 2588888765532 4678876642 3466788
Q ss_pred HHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc
Q 019420 232 ICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFT 311 (341)
Q Consensus 232 ~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VT 311 (341)
++|+++|+.+|.+|+.+. + +.+..||||+ ||||||++|+++++++|++|||||||||+||+|+++|+++|
T Consensus 149 ~~qv~lmG~~E~~R~~~~---~------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vt 218 (243)
T 3pl9_A 149 WIEVLVIGYIEFQRNAEL---D------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVT 218 (243)
T ss_dssp HHHHHHHHHHHHHHHSCC---C------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc---C------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 999999999999998753 1 2345799997 99999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhhCCcchhhHHHHh
Q 019420 312 GKGPVQNLLDHISDPLHNNLLSMV 335 (341)
Q Consensus 312 GkGPlenL~~hladP~~~N~~~~~ 335 (341)
|+||++||.+|++||+||||++++
T Consensus 219 G~Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 219 GKGPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp SSCHHHHHHHHHHCSGGGSTTTTT
T ss_pred CCChHHHHHHHhcCcchhhhhhhc
Confidence 999999999999999999999875
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=7.1e-60 Score=446.84 Aligned_cols=201 Identities=37% Similarity=0.726 Sum_probs=135.2
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhccccccc
Q 019420 114 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHL 193 (341)
Q Consensus 114 ~~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f 193 (341)
..+|+++|++|||+. ++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++..|.+
T Consensus 57 ~~~~~~~r~~wlpg~--~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~-- 132 (269)
T 2wsc_2 57 CTVAEPDRPLWFPGS--TPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL-- 132 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS--
T ss_pred ecccCCCcccccCCC--CCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc--
Confidence 358999999999864 5999999999999999999999999999999999999999999999999999999887754
Q ss_pred CcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc--------cCCCCCCC
Q 019420 194 VEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI--------FLPGDINY 265 (341)
Q Consensus 194 ~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~--------~~pGD~~y 265 (341)
..|.||++|.. +|+..+ ..++++|+++|+.+|.+|+.++...+..+. ...+|..|
T Consensus 133 ~~p~w~~aG~~-------~~~~~~----------~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 133 NTPSWYTAGEQ-------EYFTDT----------TTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp SCCCCCSTTSS-------SSCCCT----------TSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred cCccccccchh-------hhhcch----------HHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 35679886642 233322 124577888888889999876543222111 11356789
Q ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhh-hhhCCcchhhHHHHhh
Q 019420 266 PGGALFDPLNLSK-DPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLL-DHISDPLHNNLLSMVK 336 (341)
Q Consensus 266 PGg~gFDPLgL~k-dpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~-~hladP~~~N~~~~~~ 336 (341)
|||++||||||.+ ||++++++|++|||||||||+||+|+++|+++||+||++||. +||+|| ||||+++++
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~ 267 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFT 267 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhcc
Confidence 9999999999985 788899999999999999999999999999999999999999 999999 999998764
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.1e-58 Score=440.17 Aligned_cols=208 Identities=42% Similarity=0.740 Sum_probs=117.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHH------HHHHHHHHhhhhHHHHHhhhhhhhhhhhcc
Q 019420 115 LWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAF------QKYFNFEILHARWAMLGALGALVPEVLDMV 188 (341)
Q Consensus 115 ~wy~~~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~------~~~REAELkHGR~AMLAvvG~lvpEll~~~ 188 (341)
..|+++|++|||. .++|+||||++||||||||||| +|++++ +|||++|||||||||||++|++++|+++..
T Consensus 50 ~~~g~~R~~wlP~--~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~ 126 (276)
T 2wsc_3 50 VKQGSDRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126 (276)
T ss_dssp --------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSC
T ss_pred cccCCCccccCCC--CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhccc
Confidence 3499999999963 4699999999999999999999 589999 999999999999999999999999999877
Q ss_pred cccccCcc-hhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc----------
Q 019420 189 GAFHLVEP-VWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI---------- 257 (341)
Q Consensus 189 G~~~f~~p-~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~---------- 257 (341)
|.+....+ .|++.|.....| ..+|++.+. .+.++|+++|+.+|.+|+.++...+..+.
T Consensus 127 g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~ 195 (276)
T 2wsc_3 127 GLIPQETALPWFRTGFIPPAG-TYNYWADSY----------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGL 195 (276)
T ss_dssp CCCCCSSCCSSSSCCCC------CCCSCCCC----------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCC
T ss_pred ccccccCcchhhhhhcccchh-HHHHhccch----------HHHHHHHHHHHHHHHhhhcccccCCcccccccccccccc
Confidence 75422223 498876644333 345665542 24577888888899999876533222111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhh
Q 019420 258 FLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (341)
Q Consensus 258 ~~pGD~~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~ 336 (341)
...+|..||||++||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+||+||+|||++++++
T Consensus 196 ~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~ 274 (276)
T 2wsc_3 196 GGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLK 274 (276)
T ss_dssp CCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------------------
T ss_pred cccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhcc
Confidence 1134678999988999999998888999999999999999999999999999999999999999999999999999875
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=5.6e-59 Score=437.25 Aligned_cols=196 Identities=41% Similarity=0.757 Sum_probs=128.9
Q ss_pred CccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccc
Q 019420 114 SLWYGE-ERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFH 192 (341)
Q Consensus 114 ~~wy~~-~r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~ 192 (341)
..||++ +|++||++. ++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|.+
T Consensus 45 ~~~~~~~~r~~~~pg~--~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~- 121 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPGL--ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII- 121 (251)
T ss_dssp --------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS-
T ss_pred ccccCcchhhhccCCC--CCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc-
Confidence 358999 899999864 5999999999999999999999999999999999999999999999999999998877754
Q ss_pred cCcchhhhhcccccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCc-------c-CCCCCC
Q 019420 193 LVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGI-------F-LPGDIN 264 (341)
Q Consensus 193 f~~p~W~~aG~~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~-------~-~pGD~~ 264 (341)
..|.||++|.. +|++.+. .++++|+++|+.+|.+|+.++...++.+. . ..+|..
T Consensus 122 -~~p~w~~aG~~-------~~~~~~~----------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~ 183 (251)
T 2wsc_4 122 -NVPKWYAAGKE-------EYFASSS----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG 183 (251)
T ss_dssp -CCCCCSCCCSS-------SCSSCSS----------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHH
T ss_pred -CCccccccchH-------hhhccch----------HHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccc
Confidence 34679886642 3544431 13467888888889998776433222211 0 112457
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCchhhhhhhhCCcchhhHHHHhh
Q 019420 265 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 336 (341)
Q Consensus 265 yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPlenL~~hladP~~~N~~~~~~ 336 (341)
||||+ ||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||++++++
T Consensus 184 yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 184 YPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp SSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99997 99999976 67899999999999 999999999999999999999999999999999998875
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=8.9e-55 Score=406.56 Aligned_cols=193 Identities=43% Similarity=0.743 Sum_probs=138.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccccccCcchhhh
Q 019420 121 RPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWR 200 (341)
Q Consensus 121 r~~wl~~~~~~~P~yLdGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~~~f~~p~W~~ 200 (341)
|+.|+|.. ++|+||||++|||+||||+||++|+++++||||+|||||||||||++|+++||+++. +.|++
T Consensus 45 ~~~w~P~~--~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~~~~ 114 (241)
T 2wsc_1 45 AAHWMPGE--PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GNWVK 114 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C----
T ss_pred ccccCCCC--CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Ccccc
Confidence 45677654 489999999999999999999999999999999999999999999999999998643 23555
Q ss_pred hcc-cccCCCcccccCCCcccccchhhHHHHHHHHHHHhhhhhhhhhccccccCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 019420 201 VGY-SKLQGETLDYLGIPGLHLAGSQGVIVIAICQALLMVGPECARYCGIEALEPLGIFLPGDINYPGGALFDPLNLSKD 279 (341)
Q Consensus 201 aG~-~~~~g~~l~yl~~P~~~~a~~~~i~~i~~~Qi~l~~g~E~~r~~g~~~~~p~g~~~pGD~~yPGg~gFDPLgL~kd 279 (341)
++. ..+++...+|++.|.. ++.++.++++|+++++.+|.+|..+. .+.+..|||| .|||||+.+|
T Consensus 115 a~~~~~~~~g~a~~~~~~~~----~~~~~~i~~iq~l~ig~~E~~r~~~~---------~~~~~~yPgg-~fDPlgl~~~ 180 (241)
T 2wsc_1 115 AQEWAALPGGQATYLGNPVP----WGTLPTILAIEFLAIAFVEHQRSMEK---------DPEKKKYPGG-AFDPLGYSKD 180 (241)
T ss_dssp -CCCCSCSSCSSCCSSSCSS----SSSHHHHHHHHHHHTHHHHHHHTSCC---------SSCCSSSCSC-CSCSSSCSCS
T ss_pred ccchhccCCcchhhhcCcch----HHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCCCCCCC-cccccccccc
Confidence 432 2334444456655531 34566788899998888999886531 1235579999 6999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-hccCCCchhhhhhhhCCcchhhHHHHhhh
Q 019420 280 PVAFEELKVKEIKNGRLAMVAWLGFYIQA-AFTGKGPVQNLLDHISDPLHNNLLSMVKS 337 (341)
Q Consensus 280 pe~~~~lklkEIKNGRLAMlAilGf~aQ~-~VTGkGPlenL~~hladP~~~N~~~~~~~ 337 (341)
+++++++|++|||||||||+|++|+++|+ ++||+||++||.+|++||+|||++++++.
T Consensus 181 ~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 181 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp SSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 99999999999999999999999999999 68999999999999999999999998754
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.42 E-value=1.3e-13 Score=128.16 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019420 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (341)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTG 312 (341)
.+|||++||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 5799999999999999999999999999999999999999999999864
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.41 E-value=1.3e-14 Score=136.34 Aligned_cols=53 Identities=36% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019420 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (341)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPl 316 (341)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++|+.|++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999999999999999999999999998876
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.37 E-value=3.8e-14 Score=134.36 Aligned_cols=53 Identities=32% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccCCCch
Q 019420 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPV 316 (341)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTGkGPl 316 (341)
.+|||++||||||++||++++++|.+||||||+||+|++|+++|+++++.|.+
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 57888899999999999999999999999999999999999999999987654
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.36 E-value=3.1e-13 Score=126.36 Aligned_cols=51 Identities=39% Similarity=0.466 Sum_probs=47.5
Q ss_pred CCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccc
Q 019420 139 ELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (341)
Q Consensus 139 s~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~ 190 (341)
.+|||+ |||+||++|+++++++|.+||||||+||+|++|++++|+++..|.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gp 222 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGP 222 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCh
Confidence 589999 999999999999999999999999999999999999999876553
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.31 E-value=3.2e-13 Score=128.38 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=44.1
Q ss_pred CCCCCCCCCCcCCCCCCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhcccc
Q 019420 137 TGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGA 190 (341)
Q Consensus 137 dGs~PGD~GFDPLGLs~dpe~~~~~REAELkHGR~AMLAvvG~lvpEll~~~G~ 190 (341)
|..+|||++|||+||++|+++++++|++||||||+||||++|++++|+++..|.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 456899999999999988888999999999999999999999999999765543
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.26 E-value=4.7e-13 Score=125.11 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccC
Q 019420 264 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTG 312 (341)
Q Consensus 264 ~yPGg~gFDPLgL~kdpe~~~~lklkEIKNGRLAMlAilGf~aQ~~VTG 312 (341)
.+|||++||||||++||++++++|..||||||+||+|++|+++|++++.
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 5799999999999999999999999999999999999999999999753
No 13
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=21.06 E-value=58 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.1
Q ss_pred CHHHHHHHHH--HHHhhhhHHHHHh
Q 019420 154 DPMAFQKYFN--FEILHARWAMLGA 176 (341)
Q Consensus 154 dpe~~~~~RE--AELkHGR~AMLAv 176 (341)
-|..+...+| ||..|.||||==+
T Consensus 23 L~~~le~lvE~LAen~H~~Wa~~r~ 47 (103)
T 3nrt_A 23 LPESLIQLSERIAENVHEVWAKARI 47 (103)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 7999999998554
No 14
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=20.20 E-value=59 Score=19.89 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhh
Q 019420 155 PMAFQKYFNFEILHA 169 (341)
Q Consensus 155 pe~~~~~REAELkHG 169 (341)
++-+..+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456788999999853
Done!