BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019423
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2
OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1
Length = 362
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)
Query: 30 GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
GV + SV+K +IR L+T+ V +L A G A A + + L
Sbjct: 39 GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98
Query: 78 GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
G++ + +AD S+GD FG LYSAGQQANEAV QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99 GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157
Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217
Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
+AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277
Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 337
Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
SGA LLGGG+YT LDRLFP T+M M
Sbjct: 338 SGAFLLGGGVYTLLDRLFPATSMVM 362
>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1
OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1
Length = 367
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)
Query: 30 GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
GV + SV+K +IR L+T+ V +L A G A A + + L
Sbjct: 44 GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 103
Query: 78 GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
G++ + +AD S+GD FG LYSAGQQANEAV QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 104 GSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 162
Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 163 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 222
Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
+AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 223 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 282
Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 283 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 342
Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
SGA LLGGG+YT LDRLFP T+M M
Sbjct: 343 SGAFLLGGGVYTLLDRLFPATSMVM 367
>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein
OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1
Length = 354
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/342 (73%), Positives = 280/342 (81%), Gaps = 8/342 (2%)
Query: 2 SLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANL 61
S +N + R H ++ VS+ + S KSI+ S L VANL
Sbjct: 19 SCRLNHEKRWVRAGKHCELERERSLVSDAVSLERLES---KSIKL---AMLASGLGVANL 72
Query: 62 AAIGNAKALTMEN-VLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTS 120
+ +AKA ++ VL+ A S+Y +A+GSLGD G FLYSA QQANEAV QLSALS TS
Sbjct: 73 VTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTS 132
Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+
Sbjct: 133 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGI 192
Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
ASFAGKAYGQIG GLP+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQ
Sbjct: 193 VASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQ 252
Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
AYLAGLTFALAASPCSTPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGA
Sbjct: 253 AYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGA 312
Query: 301 LQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFP-TTMAM 341
LQSLLS RK S+WINP+SGALLLGGGLYTFLDRLFP TM M
Sbjct: 313 LQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354
>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra
purpurea PE=3 SV=1
Length = 240
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 6/237 (2%)
Query: 98 LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
LY++ N L QL+ ++ S + +F +GL TS SPC +S+LP+ + YI G S+
Sbjct: 7 LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66
Query: 158 AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 217
+ + F LG ++ LG+ A+ K Y Q+ G+P+ ++ + I MG +LL I+ L
Sbjct: 67 IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126
Query: 218 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277
+N + R N +++ YL+G+ LA S CSTP+ TLL +V ++ + IG
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180
Query: 278 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334
+L Y+ GY+ P+++ + F+ + S ++ P SG +LL G ++ +
Sbjct: 181 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237
>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra
yezoensis PE=3 SV=1
Length = 224
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)
Query: 97 FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 156
F+Y++ N L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI +
Sbjct: 6 FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65
Query: 157 RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 216
+ F LG ++ LG+ A+ K Y Q G+P ++ + I MGLNLL I+
Sbjct: 66 PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125
Query: 217 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 276
+ P F N + + YL+G+ +A S CSTP+ TLL ++ +++ G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179
Query: 277 GTLLLSYTTGYVAPLLLAASFAGALQSL 304
+L Y+ GY+ P+++ + F+ + L
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207
>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis
serogroup B (strain MC58) GN=dsbD PE=1 SV=1
Length = 601
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
+L F AGL S + C +LP+ +G +GK+RA ++ S+ + GLA T L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLV 248
Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
G+ A G + Q + LAAS L +V+ L++ + +QLP S+F N R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307
Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
V ++ G+ AL PC P LA LGY+ + D ++GG L + G PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364
Query: 292 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 328
+ +F G + K W+N + G +LL +Y
Sbjct: 365 IAIGTFGGHI-----LPKAGDWMNAVKYAFGFILLAVAVY 399
>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3
SV=2
Length = 601
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
+L F AGL S + C +LP+ +G +GK+RA ++ S+ + GL+ T L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLV 248
Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
G+ A G + Q + LAAS L +V+ L++ + +QLP S+F N R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307
Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
V ++ G+ AL PC P LA LGY+ + D ++GG L + G PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364
Query: 292 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 328
+ +F G + + W+N + G +LL +Y
Sbjct: 365 IAIGTFGGHI-----LPRAGDWMNAVKYAFGFILLAVAVY 399
>sp|Q487R3|DSBD_COLP3 Thiol:disulfide interchange protein DsbD OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=dsbD PE=3
SV=1
Length = 608
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 24/254 (9%)
Query: 100 SAGQQANEAVLG-----QLSALS-----FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIG 149
A QQ NE + QLS + +L F GL+ S +PC + P+ G I
Sbjct: 166 DAAQQTNEGEVKKSEQHQLSDMLKQDSLLLTLIAFFVGGLLLSFTPCVFPMYPILTGIIV 225
Query: 150 AFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV--- 206
G G + + S + G+A T LLGV + AG + + P+ GL+I+
Sbjct: 226 GQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAGAKFQAVFQH-PIVLIGLSILFIF 284
Query: 207 MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL-AGLTFALAASPCSTPVLATLLG 265
+ L++ + L LP+ + N + S+ L G+ L ASPC+T L L
Sbjct: 285 LALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVLMMGVISGLVASPCTTAPLTGALL 344
Query: 266 YVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMS---GALL 322
Y++ + D ++G + L + + G PLL+ S G L K +W+N + G LL
Sbjct: 345 YISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL-----LPKAGAWMNIIKNIFGLLL 399
Query: 323 LGGGLYTFLDRLFP 336
L ++ L+R P
Sbjct: 400 LAVPVF-LLERFIP 412
>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1
Length = 613
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 184
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 221 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 276
Query: 185 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 237
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 277 AGMQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 332
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 333 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGIALYALAMGMGIPLILVAVF 392
Query: 298 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 336
L K W++ + G +LL ++ L+R+ P
Sbjct: 393 GNKL-----LPKAGGWMDRVKTLFGFILLAAPIF-LLERILP 428
>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_1454 PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
+ +F AGL + LSPC ++P+ Y G G + ++ F LGL+ T LG
Sbjct: 8 IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61
Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
F G T + A + I++G++ L I ++ L + + + + ++++
Sbjct: 62 SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117
Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
A++ GLTF+L +PC P+LA++L L G +++ Y G P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177
Query: 301 L 301
L
Sbjct: 178 L 178
>sp|Q8XV41|DSBD_RALSO Thiol:disulfide interchange protein DsbD OS=Ralstonia solanacearum
(strain GMI1000) GN=dsbD PE=3 SV=1
Length = 608
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 135 PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-YGQIG 193
PC L +LP+ + G +R + S+A+ LG+A +GV A AG+ +
Sbjct: 201 PCVLPMLPILSAIV--VGEHATRMRAAAVSVAYVLGMAVVYTAVGVAAGLAGQGLQAALQ 258
Query: 194 TGLPLAA-SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ---AYLAGLTFA 249
L A + L +V+ L + + ELQLP+ + + A+N S Q A + G A
Sbjct: 259 NAWVLGAFAALMVVLSLAMFGLYELQLPAAWRHR--LTQASNRLSGGQVAGAAVMGALSA 316
Query: 250 LAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRK 309
L SPC TP LA L Y+A + + ++GG L S + G PL+L AG L +
Sbjct: 317 LIVSPCVTPALAGALAYIAQTGNAMVGGAALFSMSIGMGVPLVLVGVGAGNL-----LPR 371
Query: 310 FSSWI---NPMSGALLLGGGLYTFLDRLFPTTMAM 341
W+ + G +LLG L+ + + P +AM
Sbjct: 372 AGYWLVVTKAIFGFILLGVALW-IVQPVLPAWLAM 405
>sp|Q7MGV6|DSBD_VIBVY Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain YJ016) GN=dsbD PE=3 SV=1
Length = 598
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 184
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 204 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 259
Query: 185 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 237
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 260 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 315
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 316 STGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 375
Query: 298 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 336
L K W++ + G +LL ++ L+R+ P
Sbjct: 376 GNKL-----LPKAGGWMDHVKTLFGFVLLAAPIF-LLERILP 411
>sp|Q8DCZ0|DSBD_VIBVU Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus
(strain CMCP6) GN=dsbD PE=3 SV=1
Length = 593
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 184
G GL + +PC L + P+ + GSGK S+ + +G S+ + G+A T LLG+ +
Sbjct: 199 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 254
Query: 185 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 237
AG + Q P GL+I+ + L++ + LQLPS + +N + S
Sbjct: 255 AGLQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 310
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
S + G L SPC+T L+ L YVA S D L GG L + G PL+L A F
Sbjct: 311 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGVALYALAMGMGIPLILVAVF 370
Query: 298 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 336
L K W++ + G +LL ++ L+R+ P
Sbjct: 371 GNKL-----LPKAGGWMDRVKTLFGFVLLAAPIF-LLERILP 406
>sp|Q9KDL8|CCDA_BACHD Cytochrome c-type biogenesis protein CcdA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=ccdA PE=3 SV=1
Length = 238
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 125 FGAGLVTSLSPCTLSVLPLTLGYI-GAFGSGKS----RAQIIGDSIAFSLGLATTLALLG 179
F AG+V+ LSPC ++P+ L + G SG R I+ S+ F LG + LG
Sbjct: 10 FFAGVVSFLSPCVFPLVPVYLAQLTGTQISGNEITADRKLILMRSLGFILGFTSIFIFLG 69
Query: 180 VGASFAGKAYG-------QIGTGLPLAASGLAI-VMGLNLLEIIELQ--LPSFFDNFDPR 229
++F G+ + QIG G+ I V GL ++ +I ++ L PR
Sbjct: 70 ASSTFIGQLFWGNRQLFEQIG--------GIIITVFGLQMMGVISIRMLLSEKRLQAKPR 121
Query: 230 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 289
+A+F +SV L G FA +PC VL +L + G ++L Y+ G
Sbjct: 122 -QSASFANSV---LIGFLFATGWTPCIGLVLGAILVLAGDANTMWSGMSMLFVYSMGLAI 177
Query: 290 PLLLAASFAGALQSLLSFRKFSSW---INPMSGALLLGGGLYTF 330
P L A +SL RK + W I SG +++ G+ F
Sbjct: 178 PFFLVALLWS--RSLHKVRKLNKWLPTIQKGSGVVMVALGVLLF 219
>sp|Q5QVU3|DSBD_IDILO Thiol:disulfide interchange protein DsbD OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=dsbD PE=3
SV=1
Length = 568
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 21/232 (9%)
Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLG 179
+L + F G+ + +PC + P+ G + ++ + S + G+A T +LLG
Sbjct: 174 TLLLFFALGIGLAFTPCVFPMYPILSGVVLG-NRERNWKNTLWLSFIYVQGMAITYSLLG 232
Query: 180 VGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEII---ELQLP----SFFDNFDPRAAA 232
+ + AG Y Q P+ LA++ L L + LQLP S +F + +
Sbjct: 233 LVVASAGMQY-QAYFQHPVVLIVLAVLFALFALSMFGAYTLQLPISWQSKLQSFSGQQSG 291
Query: 233 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLL 292
N V ++ G L ASPC+T L+ L ++A S D + G +L + + G PL+
Sbjct: 292 GNI---VGVFIIGAISGLVASPCTTAPLSGALLFIAQSGDMVSGVAILYALSLGMGVPLI 348
Query: 293 LAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFPTTMAM 341
L G L K +W+N + G LLL L+ ++RL PT+++M
Sbjct: 349 LFGLSGGKL-----LPKAGAWMNVVKQFFGWLLLAVTLF-LIERLIPTSISM 394
>sp|P45706|CCDA_BACSU Cytochrome c-type biogenesis protein CcdA OS=Bacillus subtilis
(strain 168) GN=ccdA PE=3 SV=1
Length = 235
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 15/217 (6%)
Query: 125 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI-------IGDSIAFSLGLATTLAL 177
FGAG ++ +SPC L + P L YI + + + ++ F LG +
Sbjct: 10 FGAGFLSFISPCCLPLYPAFLSYITGVSMDDVKTEKLLLQKRSLFHTLCFLLGFSVIFIA 69
Query: 178 LGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
LG G SF G + + + L I+ G L + + + + F
Sbjct: 70 LGYGTSFIGSLFRDYHDAIRQIGALLIILFGFITLGVFRPEAMMKERRIHFKHKPSGFLG 129
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
SV L G+ FA +PC+ P+LA ++ T+ + +L Y G+ P LL + F
Sbjct: 130 SV---LIGMAFAAGWTPCTGPILAAVITLAGTNPGSAVPYMML--YVLGFAVPFLLLSFF 184
Query: 298 AGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334
L+ + RK +I G L++ G+ F + +
Sbjct: 185 ITKLKWI---RKNQLFIMKAGGVLMIVIGVLLFFNWM 218
>sp|A5UI29|DSBD_HAEIG Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittGG) GN=dsbD PE=3 SV=1
Length = 579
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 26/227 (11%)
Query: 104 QANEAVLGQLSALS---FTSLAVIFG---AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
+ N A+L + L+ F S IFG GL + +PC L +LPL + G +
Sbjct: 155 EKNTALLSEQDRLADGLFHSKWAIFGFFVLGLGLAFTPCVLPMLPLLSAIV--IGQQQRP 212
Query: 158 AQIIGDSIAF--SLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLL 212
+ S+AF G+A T LLG+ + G + QI P GL+I V+ L++
Sbjct: 213 NMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF-QIALQHPYVMIGLSILFVVLALSMF 271
Query: 213 EIIELQLPSFFDN----FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA 268
+ +QLP+ N + + + F A+ G+ L ASPC++ L+ L YVA
Sbjct: 272 GLFTIQLPNSLQNKLNTWSQKQTSGAFGG---AFAMGMIAGLVASPCTSAPLSGALLYVA 328
Query: 269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN 315
S D G L G PL+L F + K W+N
Sbjct: 329 QSGDLFTGAVTLYLLALGMGVPLMLITLFGNKI-----LPKSGEWMN 370
>sp|Q66FE1|DSBD_YERPS Thiol:disulfide interchange protein DsbD OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=dsbD
PE=3 SV=1
Length = 595
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 229
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 230 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 288
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 289 APLLLAASFAGAL 301
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|A4TRR6|DSBD_YERPP Thiol:disulfide interchange protein DsbD OS=Yersinia pestis (strain
Pestoides F) GN=dsbD PE=3 SV=1
Length = 595
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 229
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 230 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 288
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 289 APLLLAASFAGAL 301
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q1CEC8|DSBD_YERPN Thiol:disulfide interchange protein DsbD OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=dsbD PE=3 SV=1
Length = 595
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 229
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 230 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 288
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 289 APLLLAASFAGAL 301
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q8ZIY9|DSBD_YERPE Thiol:disulfide interchange protein DsbD OS=Yersinia pestis GN=dsbD
PE=3 SV=1
Length = 595
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 229
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 230 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 288
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 289 APLLLAASFAGAL 301
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|Q1C0X4|DSBD_YERPA Thiol:disulfide interchange protein DsbD OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=dsbD PE=3 SV=1
Length = 595
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 8/193 (4%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
S L F+ L A++ G G+ + +PC L + PL I S+ +I+ ++ + G+A
Sbjct: 188 STLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGREKPHSQRRILILAVVYVQGMA 245
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPR 229
T LLG+ + AG + Q P GL+++ + L++ + LQLPS +
Sbjct: 246 LTYTLLGLVVAAAGLQF-QAALQHPYVLIGLSVLFVLLALSMFGLYSLQLPSSLQTRLTQ 304
Query: 230 AAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYV 288
+ + S+ A G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 305 WSNSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMG 364
Query: 289 APLLLAASFAGAL 301
PL++ F L
Sbjct: 365 IPLVVVTLFGNKL 377
>sp|A1JIN7|DSBD_YERE8 Thiol:disulfide interchange protein DsbD OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=dsbD PE=3
SV=1
Length = 578
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 8/191 (4%)
Query: 116 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATT 174
L F+ L A++ G G+ + +PC L + PL I S+ +I+ +I + G+A T
Sbjct: 176 LPFSPLWALLIGIGI--AFTPCVLPMYPLISAIILGREKPHSQRRILLLAIVYVQGMALT 233
Query: 175 LALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNFDPRAA 231
LLG+ + AG + Q P GL+ +++ L++ + LQLPS + +
Sbjct: 234 YTLLGLVVAAAGLQF-QAALQHPYVLIGLSALFVLLALSMFGLYSLQLPSSLQTRLVQWS 292
Query: 232 AANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
++ S+ A G L SPC+T L+ +L Y+A S + L GG L Y G P
Sbjct: 293 SSQRGGSLAGVFAMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALGMGIP 352
Query: 291 LLLAASFAGAL 301
L++ F L
Sbjct: 353 LVIVTLFGNKL 363
>sp|Q7MZX2|DSBD_PHOLL Thiol:disulfide interchange protein DsbD OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=dsbD PE=3
SV=1
Length = 575
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 107 EAVLGQLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSI 165
E+ L F+ L A++ G G+ + +PC L + PL I KS QI ++
Sbjct: 164 ESASNDQQHLPFSPLWAILIGIGI--AFTPCVLPMYPLISSIILGSQRPKSLKQIFWLAL 221
Query: 166 AFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPS- 221
++ G+A T LLG+ + AG + Q P GL+ I++ L++ + LQLPS
Sbjct: 222 SYVQGMAVTYTLLGLIVAAAGLQF-QAALQHPYVLIGLSVLFILLALSMFGLYSLQLPSA 280
Query: 222 ----FFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277
+ + + + F LAGL SPC+T L+ +L Y+A S + + GG
Sbjct: 281 VQTRLVNWSNQQKNGSLFGVFAMGALAGLI----CSPCTTAPLSAILLYIAQSGNTVAGG 336
Query: 278 TLLLSYTTGYVAPLLLAASFAGAL 301
L Y G PL+ F L
Sbjct: 337 LTLYLYALGMGLPLIAVTLFGHKL 360
>sp|Q15ZS2|DSBD_PSEA6 Thiol:disulfide interchange protein DsbD OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=dsbD PE=3 SV=1
Length = 592
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS----RAQIIGDSIAFSLGLATTLALLGVG 181
G GL + +PC + P+ G + G GKS RA ++ S + G+A T +LLG+
Sbjct: 196 GVGL--AFTPCVFPMYPILSGIV--IGQGKSISTSRAFVL--SFVYVQGMALTYSLLGLV 249
Query: 182 ASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEII---ELQLPS-FFDNFDPRAAAANFPS 237
+ AG + Q P+ L +V L L + E QLPS + + + + S
Sbjct: 250 VASAGVQF-QAALQHPIILGALIVVFALLALVMFGAWEFQLPSSWQEKLNGVSNQQKSGS 308
Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
+ L G L ASPC+T L +L Y+A + D L+G + L + + G PL+L
Sbjct: 309 YLGVLLMGAISGLVASPCTTAPLTGILLYIAQTSDLLLGFSALYALSLGMGIPLILFGIT 368
Query: 298 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRL 334
G L K +W+N + G ++L L F++RL
Sbjct: 369 GGKL-----LPKAGAWMNIIKVTFGFMMLAVAL-MFVERL 402
>sp|P44919|DSBD_HAEIN Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dsbD PE=3
SV=1
Length = 579
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 26/227 (11%)
Query: 104 QANEAVLGQLSALS---FTSLAVIFG---AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
+ N A+L + L+ F S IFG GL + +PC L +LPL + G +
Sbjct: 155 EKNTALLSEQDRLADGLFHSKWAIFGFFVLGLGLAFTPCVLPMLPLLSAIV--IGQQQRP 212
Query: 158 AQIIGDSIAF--SLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLL 212
+ S+AF G+A T LLG+ + G + QI P GL+I+ + L++
Sbjct: 213 NMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF-QIALQHPYVMIGLSILFVALALSMF 271
Query: 213 EIIELQLPSFFDN----FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA 268
+ +QLP+ N + + + F A+ G+ L ASPC++ L+ L YVA
Sbjct: 272 GLFTIQLPNSLQNKLNTWSQKQTSGAFGG---AFAMGMIAGLVASPCTSAPLSGALLYVA 328
Query: 269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN 315
S D G L G PL+L F + K W+N
Sbjct: 329 QSGDLFTGAVTLYLLALGMGVPLMLITLFGNKI-----LPKSGEWMN 370
>sp|Q3YUK4|DSBD_SHISS Thiol:disulfide interchange protein DsbD OS=Shigella sonnei (strain
Ss046) GN=dsbD PE=3 SV=1
Length = 565
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTHLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG +L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGMLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q9KNN1|DSBD_VIBCH Thiol:disulfide interchange protein DsbD OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=dsbD PE=3 SV=1
Length = 600
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 105 ANEAVLGQLSALSFTSLAVI-FGAGLVTSLSPCTLSVLP-LTLGYIGAFGSGKSRAQIIG 162
A +++ +L+ +T L + G GL + +PC L + P LT +G + RA ++
Sbjct: 184 AQDSLANKLAQNWWTPLLFLALGVGL--AFTPCVLPMYPILTSIVLGGAQLTQRRALLL- 240
Query: 163 DSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQL 219
S+ + G+A T LLG+ + AG + Q P GL+++ + L++ + LQL
Sbjct: 241 -SVIYVQGMALTYTLLGLVVASAGLQF-QAALQHPYVLMGLSVLFVALALSMFGLYSLQL 298
Query: 220 PSFFDNFDPRAAAANFPSSVQAYLA-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 278
PS + + A S+ A G L SPC+T L+ L YVA S D L G
Sbjct: 299 PSGVQTWLNSLSNAQQGGSLPGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGAV 358
Query: 279 LLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLF 335
L + G PL+L A F L K +W+ + G +LL ++ L+R+
Sbjct: 359 ALYALAIGMGIPLILVAVFGNKL-----LPKAGNWMERVKTLFGFVLLAAPIF-LLERIV 412
Query: 336 P 336
P
Sbjct: 413 P 413
>sp|Q1R3C4|DSBD_ECOUT Thiol:disulfide interchange protein DsbD OS=Escherichia coli
(strain UTI89 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q0T9Q5|DSBD_ECOL5 Thiol:disulfide interchange protein DsbD OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q8CVH5|DSBD_ECOL6 Thiol:disulfide interchange protein DsbD OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q31T72|DSBD_SHIBS Thiol:disulfide interchange protein DsbD OS=Shigella boydii
serotype 4 (strain Sb227) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q0SXE3|DSBD_SHIF8 Thiol:disulfide interchange protein DsbD OS=Shigella flexneri
serotype 5b (strain 8401) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|P36655|DSBD_ECOLI Thiol:disulfide interchange protein DsbD OS=Escherichia coli
(strain K12) GN=dsbD PE=1 SV=4
Length = 565
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|Q2NW99|DSBD_SODGM Thiol:disulfide interchange protein DsbD OS=Sodalis glossinidius
(strain morsitans) GN=dsbD PE=3 SV=1
Length = 590
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 112 QLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLG 170
Q + L F+ L A++ G G+ + +PC L + PL I S A+++ ++ + +G
Sbjct: 182 QSNNLPFSPLWALLIGIGI--AFTPCVLPMYPLISAVILGNRLQLSTARVLLLAVVYVMG 239
Query: 171 LATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDN--- 225
+A T LLGV + AG + + L + + L I++ L++ + LQLPS
Sbjct: 240 MAITYTLLGVAVAAAGLQFQAVLQQPALLIGLAALFILLALSMFGVFTLQLPSALQTHLA 299
Query: 226 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYT 284
+ R P ++ G L SPC+T L+ +L Y+A S + G L Y
Sbjct: 300 LWSNRQRQGTLPG---VFIMGALAGLFCSPCTTAPLSAILLYIAQSGNLWFSGFTLWLYA 356
Query: 285 TGYVAPLLLAASFAGAL 301
G PL+L A F L
Sbjct: 357 VGMGIPLILVALFGHRL 373
>sp|Q9CP40|DSBD_PASMU Thiol:disulfide interchange protein DsbD OS=Pasteurella multocida
(strain Pm70) GN=dsbD PE=3 SV=1
Length = 576
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 183
+FG GL + +PC L +LPL + S A+ G S+ + G+A T LLG+ +
Sbjct: 183 LFGLGL--AFTPCVLPMLPLLSAIVIGREQRPSTAKAFGLSVVYVQGMALTYTLLGLIVA 240
Query: 184 FAGKAYGQIGTGLP---LAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAAAANFP 236
G + Q+ P L S + +++ L++ + LQLP + + + + F
Sbjct: 241 AIGLPF-QVALQSPYVLLTLSAIFVLLALSMFGLFTLQLPVSLQTKLTQYSQQQKSGVFG 299
Query: 237 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS 296
++ G+ L ASPC++ L+ L YVA S D G L G PL+
Sbjct: 300 G---VFVMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAITLYLLALGMGLPLIFITV 356
Query: 297 F 297
F
Sbjct: 357 F 357
>sp|Q328D2|DSBD_SHIDS Thiol:disulfide interchange protein DsbD OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=dsbD PE=3 SV=1
Length = 565
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + +++ + LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|P58162|DSBD_ECO57 Thiol:disulfide interchange protein DsbD OS=Escherichia coli
O157:H7 GN=dsbD PE=1 SV=1
Length = 565
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S A+ + + + G+A
Sbjct: 161 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA 218
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GL IV + +++ ++ LQLPS
Sbjct: 219 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLTIVFTLLAMSMFGLLTLQLPSSLQTRLTL 277
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 278 MSNRQQGGS-PGGV--FIMGTIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 334
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 335 GMGLPLMLITVFGNRL 350
>sp|A5UDI9|DSBD_HAEIE Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain PittEE) GN=dsbD PE=3 SV=1
Length = 579
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 20/193 (10%)
Query: 132 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAF--SLGLATTLALLGVGASFAGKAY 189
+ +PC L +LPL + G + + S+AF G+A T LLG+ + G +
Sbjct: 189 AFTPCVLPMLPLLSAIV--IGQQQRPNMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF 246
Query: 190 GQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFFDN----FDPRAAAANFPSSVQAY 242
QI P GL+I V+ L++ + +QLP+ N + + + F A+
Sbjct: 247 -QIALQHPYVMIGLSILFVVLALSMFGLFTIQLPNSLQNKLNTWSQKQTSGAFGG---AF 302
Query: 243 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
G+ L ASPC++ L+ L YVA S D G L G PL+L F +
Sbjct: 303 AMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGNKI- 361
Query: 303 SLLSFRKFSSWIN 315
K W+N
Sbjct: 362 ----LPKSGEWMN 370
>sp|Q9XDB2|DSBD_PANCI Thiol:disulfide interchange protein DsbD OS=Pantoea citrea GN=dsbD
PE=3 SV=1
Length = 578
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 113 LSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL 171
+S L F+ L A++ G G+ + +PC L + PL I ++I+ + + G+
Sbjct: 171 VSRLPFSPLWALLIGIGI--AFTPCVLPMYPLISAIILGGRRDVRASRILLLAFVYVQGM 228
Query: 172 ATTLALLGVGASFAGKAYGQIGTGLP---LAASGLAIVMGLNLLEIIELQLPSFFDN--- 225
T L+G+ + AG + Q P L+ S + I++ L++ + LQLPS
Sbjct: 229 GLTYTLMGIVVAAAGLRF-QAALQSPVILLSLSAVFILLALSMFGLFSLQLPSSLQTRLT 287
Query: 226 -FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYT 284
+ R + +L G L SPC+T L+ +L Y+A S + L GG L Y
Sbjct: 288 LWSNRQQGGSLSG---VFLMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYA 344
Query: 285 TGYVAPLLLAASFAGAL 301
G PL++ F L
Sbjct: 345 LGMGLPLIIVTLFGNKL 361
>sp|Q8Z1A8|DSBD_SALTI Thiol:disulfide interchange protein DsbD OS=Salmonella typhi
GN=dsbD PE=3 SV=1
Length = 567
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q5PIQ0|DSBD_SALPA Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=dsbD PE=3 SV=1
Length = 567
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q8ZKC3|DSBD_SALTY Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dsbD PE=3 SV=1
Length = 567
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 114 SALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLA 172
+ L F++L A++ G G+ + +PC L + PL G + S + + + + G+A
Sbjct: 164 AQLPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQGMA 221
Query: 173 TTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN---- 225
T LG+ + AG + Q P GLAIV + L++ + LQLPS
Sbjct: 222 LTYTALGLVVAAAGLQF-QAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQTRLTL 280
Query: 226 FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTT 285
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y
Sbjct: 281 MSNRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL 337
Query: 286 GYVAPLLLAASFAGAL 301
G PL+L F L
Sbjct: 338 GMGLPLMLVTVFGNRL 353
>sp|Q4QM23|DSBD_HAEI8 Thiol:disulfide interchange protein DsbD OS=Haemophilus influenzae
(strain 86-028NP) GN=dsbD PE=3 SV=1
Length = 579
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 26/196 (13%)
Query: 132 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAF--SLGLATTLALLGVGASFAGKAY 189
+ +PC L +LPL + G + + S+AF G+A T LLG+ + G +
Sbjct: 189 AFTPCVLPMLPLLSAIV--IGQQQRPNMMRAFSLAFLYVQGMALTYTLLGLAVAAIGLPF 246
Query: 190 GQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ------ 240
QI P GL+I+ + L++ + +QLP+ N N S Q
Sbjct: 247 -QIALQHPYVMIGLSILFVALALSMFGLFTIQLPNSLQN------KLNTWSQKQTSGAFG 299
Query: 241 -AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAG 299
A+ G+ L ASPC++ L+ L YVA S D G L G PL+L F
Sbjct: 300 GAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAATLYLLALGMGVPLMLITLFGN 359
Query: 300 ALQSLLSFRKFSSWIN 315
+ K W+N
Sbjct: 360 KI-----LPKSGEWMN 370
>sp|A8AMR4|DSBD_CITK8 Thiol:disulfide interchange protein DsbD OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=dsbD
PE=3 SV=1
Length = 569
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 116 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATT 174
L F++L A++ G G+ + +PC L + PL G + S + + + + G+A T
Sbjct: 168 LPFSALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTGRALLLTFIYVQGMALT 225
Query: 175 LALLGVGASFAGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDN----FD 227
LG+ + AG + Q P GLA+V + L++ + LQLPS
Sbjct: 226 YTALGLVVAAAGLQF-QAALQHPYVLIGLALVFTLLALSMFGLFTLQLPSSLQTRLTLMS 284
Query: 228 PRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGY 287
R + P V ++ G L SPC+T L+ +L Y+A S + +GG L Y G
Sbjct: 285 NRQQGGS-PGGV--FVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGM 341
Query: 288 VAPLLLAASFAGAL 301
PL+L F L
Sbjct: 342 GLPLILITVFGNRL 355
>sp|A6TH46|DSBD_KLEP7 Thiol:disulfide interchange protein DsbD OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=dsbD PE=3 SV=1
Length = 598
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 116 LSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATT 174
L FT+L A++ G G+ + +PC L + PL G + S A+ + + + G+A T
Sbjct: 197 LPFTALWALLIGIGI--AFTPCVLPMYPLISGIVLGGKQRLSTARALLLAFIYVQGMALT 254
Query: 175 LALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNF----- 226
LG+ + AG + Q P GL+ I++ L++ + LQLPS
Sbjct: 255 YTALGLVVAAAGLQF-QAALQHPYVLVGLSAVFILLALSMFGLFTLQLPSSLQTRLTLLS 313
Query: 227 DPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTG 286
+ R + P V + G L SPC+T L+ +L Y+A S + +GG L Y G
Sbjct: 314 NKRQGGS--PGGV--FAMGAIAGLICSPCTTAPLSAILLYIAQSGNLWLGGGTLYLYALG 369
Query: 287 YVAPLLLAASFAGAL 301
PL+L F L
Sbjct: 370 MGLPLILMTVFGNRL 384
>sp|Q6D9J6|DSBD_ERWCT Thiol:disulfide interchange protein DsbD OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=dsbD PE=3 SV=1
Length = 577
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 8/195 (4%)
Query: 112 QLSALSFTSL-AVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLG 170
Q + + F+ A++ G G+ + +PC L + PL + + + + S+ + G
Sbjct: 171 QTTPMPFSPWWALLIGIGV--AFTPCVLPMYPLIASLVLGRKEQLTPRRTLLLSMTYVQG 228
Query: 171 LATTLALLGVGASFAGKAYGQIGTGLPLAASGLA---IVMGLNLLEIIELQLPSFFDNFD 227
+A T LLG+ + AG + Q P GL+ I + L++ + LQLPS
Sbjct: 229 MALTYTLLGLIVAAAGLRF-QAALQHPYILIGLSVMFIALALSMFGLYTLQLPSSVQTRL 287
Query: 228 PRAAAANFPSSVQ-AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTG 286
+ SV + G L SPC+T L+ +L Y+A S + L GG L Y G
Sbjct: 288 TEWSNRQQGGSVTGVFCMGALAGLICSPCTTAPLSAILLYIAQSGNMLAGGGTLYLYALG 347
Query: 287 YVAPLLLAASFAGAL 301
PL+L F L
Sbjct: 348 MGLPLILVTLFGNKL 362
>sp|Q4K909|DSBD_PSEF5 Thiol:disulfide interchange protein DsbD OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=dsbD PE=3 SV=1
Length = 583
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
L FG GL+ + +PC+L +LP+ G + GSG S + + + ++ L +A A +GV
Sbjct: 171 LLAFFGFGLLLAFAPCSLPMLPILAGMV--VGSGASPRRGLALASSYVLCMALVYAGMGV 228
Query: 181 GASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFF-DNFDPRAAAANFP 236
A+ G +A+ Q L A+ L +++ L + ELQ+P+ D + +
Sbjct: 229 IAALLGSNLQAWLQQPWVLGSFAA-LFVLLSLPMFGFFELQMPALLRDRLEGASRQRQGG 287
Query: 237 SSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS 282
S + + G AL PC T LA L Y+A + + L GG L +
Sbjct: 288 SLIGCGILGALSALLVGPCMTAPLAGGLLYIAQTGNALFGGLALFA 333
>sp|Q9I104|DSBD2_PSEAE Thiol:disulfide interchange protein DsbD 2 OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=dsbD2 PE=3 SV=1
Length = 587
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 135 PCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG---KAYGQ 191
PC+L +LP+ G + G+G R ++ S + L +A A LGV A+ G +A+ Q
Sbjct: 187 PCSLPMLPILAGLVVGSGAGPRRGLLLAGS--YVLSMALVYAGLGVVAALLGGNLQAWLQ 244
Query: 192 IGTGLPLAASGLAIVMGLNLLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTFAL 250
L + + L + + L + ELQLP + D D + S A G L
Sbjct: 245 Q-PWLLGSFAALFVFLALPMFGFFELQLPAALRDRLDGLSRGRKGGSLAGAAALGALSGL 303
Query: 251 AASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 293
PC T LA L Y+A + + L GG +L S G PLLL
Sbjct: 304 LVGPCMTAPLAGALLYIAQTGNALHGGLVLFSLGLGIGMPLLL 346
>sp|Q9KJZ3|DSBD_PSEUK Thiol:disulfide interchange protein DsbD OS=Pseudomonas sp. (strain
JR1 / K1) GN=dsbD PE=3 SV=1
Length = 578
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 132 SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 191
+ +PC+L +LP+ G I GSG + + + ++ + +A A +GV A+ G
Sbjct: 175 AFTPCSLPMLPILAGLI--VGSGATPKRGFALATSYVVSMALVYAAMGVLAAMLGANLQA 232
Query: 192 IGTGLPLAAS--GLAIVMGLNLLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTF 248
+ L S + +++ L + ELQLP + D + + S A + G
Sbjct: 233 LLQNPWLLGSFAAVFVLLALPMFGFFELQLPVAVRDRLENVSRNQRGGSLFGAGVLGALS 292
Query: 249 ALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFR 308
L PC T LA L Y+A S + L GG +L + G PLLL +
Sbjct: 293 GLLVGPCMTAPLAGALLYIAQSGNALHGGLILFAMGIGIGVPLLLLVTVGNRF-----LP 347
Query: 309 KFSSWINPMSG 319
K +W+N + G
Sbjct: 348 KPGAWMNLLKG 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,584,156
Number of Sequences: 539616
Number of extensions: 4563695
Number of successful extensions: 13416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 13274
Number of HSP's gapped (non-prelim): 91
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)