Query 019423
Match_columns 341
No_of_seqs 175 out of 1275
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02683 DsbD: Cytochrome C bi 100.0 2.6E-33 5.7E-38 256.5 22.2 207 124-331 1-211 (211)
2 PRK00293 dipZ thiol:disulfide 100.0 6E-32 1.3E-36 280.7 21.6 220 116-338 164-386 (571)
3 COG0785 CcdA Cytochrome c biog 100.0 5E-31 1.1E-35 244.2 23.5 208 118-329 10-219 (220)
4 COG4232 Thiol:disulfide interc 99.9 2.8E-27 6.1E-32 241.5 16.8 216 117-338 166-387 (569)
5 COG2836 Uncharacterized conser 99.9 2.3E-21 5.1E-26 178.1 21.9 204 120-334 5-219 (232)
6 PF13386 DsbD_2: Cytochrome C 99.9 1E-21 2.2E-26 178.5 18.8 189 124-328 2-199 (199)
7 PRK10019 nickel/cobalt efflux 99.0 3.1E-07 6.8E-12 88.3 25.7 218 106-334 5-274 (279)
8 COG0785 CcdA Cytochrome c biog 98.9 5.5E-08 1.2E-12 90.6 15.0 158 49-211 53-219 (220)
9 PF02683 DsbD: Cytochrome C bi 98.8 1.7E-07 3.8E-12 85.9 14.6 141 67-212 60-210 (211)
10 PF11139 DUF2910: Protein of u 98.5 1.6E-05 3.4E-10 73.2 20.2 193 127-333 4-212 (214)
11 COG2215 ABC-type uncharacteriz 98.4 0.00073 1.6E-08 65.5 27.0 207 117-333 54-300 (303)
12 PF01810 LysE: LysE type trans 98.1 0.00083 1.8E-08 60.0 19.6 164 160-332 22-190 (191)
13 PRK10520 rhtB homoserine/homos 98.1 0.0019 4.2E-08 58.8 22.2 191 123-333 8-204 (205)
14 PRK00293 dipZ thiol:disulfide 97.9 0.00018 3.9E-09 75.7 13.7 138 71-213 232-380 (571)
15 PRK09304 arginine exporter pro 97.9 0.0084 1.8E-07 54.9 22.8 195 121-335 5-204 (207)
16 COG1280 RhtB Putative threonin 97.8 0.012 2.6E-07 54.2 23.1 195 119-333 4-207 (208)
17 PRK10229 threonine efflux syst 97.8 0.015 3.3E-07 52.8 22.7 192 123-333 7-206 (206)
18 PRK10958 leucine export protei 97.7 0.021 4.5E-07 52.6 23.1 184 129-331 18-209 (212)
19 TIGR00949 2A76 The Resistance 97.5 0.026 5.6E-07 50.3 20.0 163 160-328 17-184 (185)
20 PRK10323 cysteine/O-acetylseri 97.3 0.12 2.7E-06 46.8 22.2 176 128-330 13-194 (195)
21 PF01914 MarC: MarC family int 97.0 0.073 1.6E-06 49.1 17.2 79 128-212 10-88 (203)
22 PF09930 DUF2162: Predicted tr 96.8 0.065 1.4E-06 50.3 15.5 153 155-337 29-183 (224)
23 PF03824 NicO: High-affinity n 96.7 0.58 1.3E-05 44.7 23.7 66 118-191 2-67 (282)
24 PRK10995 inner membrane protei 96.7 0.11 2.4E-06 48.4 16.3 82 125-212 11-92 (221)
25 TIGR00427 membrane protein, Ma 96.7 0.44 9.5E-06 43.9 19.8 80 127-212 12-91 (201)
26 PRK11111 hypothetical protein; 96.5 0.23 4.9E-06 46.3 17.1 81 126-212 14-94 (214)
27 PF13386 DsbD_2: Cytochrome C 96.5 0.044 9.5E-07 49.8 12.1 82 120-209 117-198 (199)
28 TIGR00948 2a75 L-lysine export 96.1 0.46 1E-05 42.1 16.2 151 164-321 22-176 (177)
29 COG2095 MarC Multiple antibiot 96.1 0.51 1.1E-05 43.7 16.6 78 129-212 14-91 (203)
30 PRK10739 putative antibiotic t 95.9 0.71 1.5E-05 42.5 16.8 79 128-212 10-88 (197)
31 COG4232 Thiol:disulfide interc 95.7 0.014 3.1E-07 61.1 5.3 90 120-215 289-383 (569)
32 PF09948 DUF2182: Predicted me 95.4 0.45 9.8E-06 43.7 13.3 142 161-329 36-190 (191)
33 PRK10019 nickel/cobalt efflux 93.9 0.67 1.4E-05 45.0 11.0 84 124-212 180-270 (279)
34 COG2836 Uncharacterized conser 93.8 1.4 3E-05 41.6 12.5 125 78-212 77-215 (232)
35 PRK11469 hypothetical protein; 88.6 19 0.00041 32.8 20.3 26 309-334 161-186 (188)
36 COG2215 ABC-type uncharacteriz 88.1 7 0.00015 38.4 11.3 85 123-212 203-297 (303)
37 TIGR00802 nico high-affinity n 84.6 12 0.00027 36.3 10.9 162 123-289 3-194 (280)
38 PF01810 LysE: LysE type trans 84.5 15 0.00033 32.4 11.0 132 76-212 55-188 (191)
39 COG5486 Predicted metal-bindin 84.4 40 0.00087 32.4 14.1 170 133-330 97-279 (283)
40 PF05977 MFS_3: Transmembrane 81.7 73 0.0016 33.5 18.8 101 81-188 59-169 (524)
41 TIGR00704 NaPi_cotrn_rel Na/Pi 80.3 28 0.0006 34.3 11.9 131 196-331 5-147 (307)
42 PF03596 Cad: Cadmium resistan 80.2 36 0.00079 31.3 11.9 73 252-332 108-181 (191)
43 COG1279 Lysine efflux permease 75.8 69 0.0015 29.8 15.9 44 289-332 158-201 (202)
44 COG1971 Predicted membrane pro 74.3 73 0.0016 29.4 17.8 26 308-333 162-187 (190)
45 COG4827 Predicted transporter 73.4 83 0.0018 29.6 16.0 17 317-333 172-188 (239)
46 TIGR03717 R_switched_YjbE inte 68.1 92 0.002 28.1 19.0 141 155-331 30-174 (176)
47 PF03824 NicO: High-affinity n 67.1 72 0.0016 30.4 11.0 66 119-189 177-243 (282)
48 COG1279 Lysine efflux permease 59.8 1.5E+02 0.0033 27.6 11.8 132 71-212 57-199 (202)
49 COG1283 NptA Na+/phosphate sym 57.3 2.7E+02 0.0058 29.7 19.3 125 195-325 133-258 (533)
50 COG1283 NptA Na+/phosphate sym 48.9 1.9E+02 0.0042 30.8 11.1 134 195-334 7-154 (533)
51 PRK10958 leucine export protei 46.7 2.3E+02 0.005 25.8 12.6 137 70-212 63-208 (212)
52 COG1280 RhtB Putative threonin 45.2 2.4E+02 0.0052 25.7 12.5 136 73-212 62-204 (208)
53 PRK10621 hypothetical protein; 45.0 2.7E+02 0.0059 26.2 18.0 29 309-337 230-258 (266)
54 COG1971 Predicted membrane pro 42.1 2.8E+02 0.0061 25.6 13.0 145 50-212 35-184 (190)
55 COG0730 Predicted permeases [G 40.3 3.1E+02 0.0066 25.5 18.2 26 309-334 230-255 (258)
56 PF04474 DUF554: Protein of un 38.6 3.5E+02 0.0075 25.6 10.4 22 196-217 186-207 (226)
57 PRK10323 cysteine/O-acetylseri 38.1 3E+02 0.0064 24.7 9.8 87 124-211 106-193 (195)
58 PF04156 IncA: IncA protein; 37.3 2.1E+02 0.0046 25.3 8.3 16 197-212 45-60 (191)
59 PF02690 Na_Pi_cotrans: Na+/Pi 35.1 2.9E+02 0.0064 23.7 11.2 59 236-295 30-89 (142)
60 PF08611 DUF1774: Fungal prote 34.8 2.1E+02 0.0045 23.7 7.0 20 167-186 25-44 (97)
61 PRK01061 Na(+)-translocating N 34.7 90 0.002 29.9 5.6 53 243-297 121-173 (244)
62 PF09930 DUF2162: Predicted tr 33.8 3.5E+02 0.0075 25.5 9.4 58 272-333 30-89 (224)
63 PRK12456 Na(+)-translocating N 28.8 1.2E+02 0.0025 28.2 5.2 56 243-300 109-164 (199)
64 PRK10995 inner membrane protei 27.9 4.1E+02 0.0089 24.6 8.8 26 70-95 63-88 (221)
65 COG2119 Predicted membrane pro 27.4 5E+02 0.011 24.0 15.7 43 170-212 39-83 (190)
66 COG4657 RnfA Predicted NADH:ub 26.5 4.7E+02 0.01 23.9 8.3 55 242-298 101-155 (193)
67 PF05052 MerE: MerE protein; 25.0 1.2E+02 0.0026 23.8 3.8 27 238-265 14-40 (75)
68 PF11118 DUF2627: Protein of u 22.3 3.9E+02 0.0084 21.2 6.2 48 288-335 11-62 (77)
69 TIGR02230 ATPase_gene1 F0F1-AT 21.3 4.8E+02 0.01 21.6 8.2 21 282-302 47-67 (100)
No 1
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=2.6e-33 Score=256.46 Aligned_cols=207 Identities=41% Similarity=0.630 Sum_probs=175.2
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019423 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 200 (341)
Q Consensus 124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~---~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~ 200 (341)
+|.+|++++++||++|++|++++++.+++++++|++ .+..++.|.+|+.++|..+|..++.+++.+++..+++..+.
T Consensus 1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~ 80 (211)
T PF02683_consen 1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA 80 (211)
T ss_pred ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999886533222222 57899999999999999999999999999988788899999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHH
Q 019423 201 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 280 (341)
Q Consensus 201 GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~lll 280 (341)
|++++++|+.+++.++.+.+...+.. .+.+++++++..++|++|+.++++|+||++|++.+++.++++++|+..+..++
T Consensus 81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll 159 (211)
T PF02683_consen 81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL 159 (211)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence 99999999999988774332221111 01112344557899999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423 281 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTFL 331 (341)
Q Consensus 281 l~fgLG~~lPLlll~~~~~~l~-~~~~~~k~~~~i~~isGilLI~~Giy~ll 331 (341)
++|++|+++|+++++.+.+..+ ..++.+|+++|+|++.|++++++|+|+++
T Consensus 160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l~ 211 (211)
T PF02683_consen 160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLLT 211 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999888765 66788899999999999999999999763
No 2
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=100.00 E-value=6e-32 Score=280.69 Aligned_cols=220 Identities=26% Similarity=0.367 Sum_probs=182.4
Q ss_pred chhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Q 019423 116 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G 193 (341)
Q Consensus 116 ~~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~--~ 193 (341)
..++.++.+|++|++++++||++||+|++.+++.+.+++++|++.+.++++|++|++++|+++|++++.+|..++.. .
T Consensus 164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~ 243 (571)
T PRK00293 164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH 243 (571)
T ss_pred cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44578889999999999999999999999999875432245667888999999999999999999999999877643 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccccc-cchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCC
Q 019423 194 TGLPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD 272 (341)
Q Consensus 194 ~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~-~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs 272 (341)
.++.++.+++++++|++|+|.+++++|..+++ .++..++.+.++..++|++|++++++++||++|++++++.+++.+++
T Consensus 244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~ 323 (571)
T PRK00293 244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence 35677888999999999999998877765432 22211223446789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcccc
Q 019423 273 PLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT 338 (341)
Q Consensus 273 ~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~~p~~ 338 (341)
+..|++.|++||+|+++|+++++.+.+++ +.+.++|..+++++.|++|+++|+| ++.+++|+.
T Consensus 324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~--lpk~g~wm~~~k~~~G~~ll~~~~~-ll~~~~~~~ 386 (571)
T PRK00293 324 LLLGGLTLYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVF-LLERVLPGV 386 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCccHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 99999999999999999999999887654 2345567777888999999999999 455788764
No 3
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5e-31 Score=244.15 Aligned_cols=208 Identities=34% Similarity=0.507 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 019423 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197 (341)
Q Consensus 118 ~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~ 197 (341)
.+.+..+|.+|+++++|||++|++|.++++..+.+ .++|++.+.+++.|.+|+.++|..+|+.+..+++.+...++++.
T Consensus 10 ~~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~ 88 (220)
T COG0785 10 TVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLR 88 (220)
T ss_pred hhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35588999999999999999999999999987542 23377888999999999999999999999999999988777899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHH
Q 019423 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277 (341)
Q Consensus 198 ~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~ 277 (341)
++.|++++++|+.+++..+.+.+....+++.+ .+..+..++|++|+.++++|+||.+|++.+++++++.+++...|.
T Consensus 89 ~i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~ 165 (220)
T COG0785 89 YIAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGA 165 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999998876555443332211 235678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 019423 278 TLLLSYTTGYVAPLLLAASFAGALQ--SLLSFRKFSSWINPMSGALLLGGGLYT 329 (341)
Q Consensus 278 llll~fgLG~~lPLlll~~~~~~l~--~~~~~~k~~~~i~~isGilLI~~Giy~ 329 (341)
.+|++|++|.++|+++++.+.++.. +.++++||.++++++.|++++.+|+++
T Consensus 166 ~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 166 LLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998875 478899999999999999999999985
No 4
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.95 E-value=2.8e-27 Score=241.46 Aligned_cols=216 Identities=31% Similarity=0.490 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-
Q 019423 117 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GT- 194 (341)
Q Consensus 117 ~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~-~~- 194 (341)
...+++.+|+.|++-.|+||++||+|+..+.+.++.++.++++.+..+..|..|+.++|+++|+.++..|..++.. |+
T Consensus 166 ~~~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P 245 (569)
T COG4232 166 LKWSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQP 245 (569)
T ss_pred CCHHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHccc
Confidence 3455889999999999999999999999988776544455666778888999999999999999999888666532 32
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccc-cchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCCh
Q 019423 195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP 273 (341)
Q Consensus 195 ~l~~i~GillIl~GL~lLg~~~l~lp~~~~~-~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~ 273 (341)
++-....+++++++++|+|++++++|...+. .....++++..+..++|.+|++.+++.+||++|.+.++|.|+++++|+
T Consensus 246 ~vl~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~ 325 (569)
T COG4232 246 WVLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNA 325 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchH
Confidence 4455667788999999999999999987543 232233334445899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHHHHHhhhhcccc
Q 019423 274 LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI---NPMSGALLLGGGLYTFLDRLFPTT 338 (341)
Q Consensus 274 ~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i---~~isGilLI~~Giy~ll~~~~p~~ 338 (341)
+.|...+.++|+|+++|+++++++..++ ++|.++|+ |.+.|++|++..+| ++.|++|+.
T Consensus 326 ~~g~~~l~al~LGMg~Plllv~~f~~~~-----LPk~G~WM~~vK~~fGFvlLa~aiw-Ll~~~~~e~ 387 (569)
T COG4232 326 LLGGLALYALGLGMGLPLLLIGVFGNRL-----LPKPGPWMNTVKQAFGFVLLATAIW-LLWRVLPEV 387 (569)
T ss_pred HHHHHHHHHHHHhcccchhhheeccccc-----CCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 9999999999999999999999888443 56655555 56699999999999 667888874
No 5
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=178.10 Aligned_cols=204 Identities=25% Similarity=0.325 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhH
Q 019423 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGL 196 (341)
Q Consensus 120 ~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~---~~~~l 196 (341)
+++.++++|+.++ .||..+|-|+..++...+.++++++ -++.++.|++||+++|+++|++.+.+|..+.+ .+.+.
T Consensus 5 ~~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l 82 (232)
T COG2836 5 SFLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVL 82 (232)
T ss_pred hHHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888888766 6999999999998876543333332 27889999999999999999999999977654 34567
Q ss_pred HHHHHHHHHHHHHHHHHH---h--hhhccccccccchhh---hhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHh
Q 019423 197 PLAASGLAIVMGLNLLEI---I--ELQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA 268 (341)
Q Consensus 197 ~~i~GillIl~GL~lLg~---~--~l~lp~~~~~~~~~~---~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa 268 (341)
.+++|+++|++|+.++.. . ..++|...+++.+.. +..+.++.++++++|+++|+ .||. ++++.+.+|.
T Consensus 83 ~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~ 158 (232)
T COG2836 83 FIIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYAL 158 (232)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHH
Confidence 899999999999999522 2 223443322221111 12345567899999999995 9995 7788899999
Q ss_pred hcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423 269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334 (341)
Q Consensus 269 ~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~ 334 (341)
.++|+.+|+++|++||+||..+++..+.+++++. ...+++.++.+|.+++.+|+|.++.-.
T Consensus 159 ~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s-----~~~r~~~~rl~~gl~~v~g~~~l~~g~ 219 (232)
T COG2836 159 STGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLS-----KSSRKRLNRLSGGLMVVVGLIGLWKGL 219 (232)
T ss_pred HcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888999888874 234667888888888888888776443
No 6
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=99.89 E-value=1e-21 Score=178.49 Aligned_cols=189 Identities=28% Similarity=0.401 Sum_probs=138.3
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHH
Q 019423 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP 197 (341)
Q Consensus 124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~------~~l~ 197 (341)
+|++|+++++ ||..+|.|+..++...+ + + +.+ ..+.|++||+++|+++|++++.+|+.+.... ....
T Consensus 2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~---~-~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~ 74 (199)
T PF13386_consen 2 AFLLGLLGSL-HCIGMCGPIALALSLSQ---P-K-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG 74 (199)
T ss_pred HHHHHHHHhh-hHHHhHHHHHHHHhccC---c-c-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 7899999999 99999999999985432 2 2 234 5899999999999999999999999876432 2335
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hccccccccchhhhh-cCC-CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh
Q 019423 198 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 274 (341)
Q Consensus 198 ~i~GillIl~GL~lLg~~~l-~lp~~~~~~~~~~~~-~~~-~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~ 274 (341)
++.+.+++++|+.++..-+. +++...+...++..+ .++ ++..++|.+|+++|+ .|| |.++.++..++.++|+.
T Consensus 75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~ 150 (199)
T PF13386_consen 75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL 150 (199)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence 55666666667777632111 011110111111111 122 678999999999997 799 35667778888999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 019423 275 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY 328 (341)
Q Consensus 275 ~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy 328 (341)
+|+++|++|++||..|+++++...++++ ++.+++..+++|+++++.|+|
T Consensus 151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~-----~~~~~~~~r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 151 YGALLMLAFGLGTLPALLLAGLLAGKLS-----RRLRRRLLRLAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999888888888777764 234456667999999999987
No 7
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=99.00 E-value=3.1e-07 Score=88.29 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=138.9
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423 106 NEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA 185 (341)
Q Consensus 106 ~~~~~~~L~~~~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~l 185 (341)
+++++|. .-|.-+..+|+.|+.-++.|=-.- .++.+|+..+ +++.++....++.-.++=+.+-.+++.+.-.+
T Consensus 5 ~~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l 77 (279)
T PRK10019 5 TTLLQQG---NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYL 77 (279)
T ss_pred HHHHHcc---hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444 456777789999999999987644 3356777653 34555666667666666655555555544344
Q ss_pred HHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhhhhc------cc--cccc---------------------------cch
Q 019423 186 GKAYGQ--IGTGLPLAASGLAIVMGLNLLEIIELQL------PS--FFDN---------------------------FDP 228 (341)
Q Consensus 186 G~~l~~--~~~~l~~i~GillIl~GL~lLg~~~l~l------p~--~~~~---------------------------~~~ 228 (341)
.+.+.. ...++..+.+++++.+|++++-....+. +. ..+. .++
T Consensus 78 ~~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~ 157 (279)
T PRK10019 78 SRRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDA 157 (279)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCH
Confidence 444432 4567889999999999999983311110 00 0000 000
Q ss_pred h---------hhhc-CCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHH
Q 019423 229 R---------AAAA-NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA 298 (341)
Q Consensus 229 ~---------~~~~-~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~ 298 (341)
. .+.. +..+..+.+.+|+.-|+ .||++.++. |..+.+.+.+..|+++.++|++|+++-+..++...
T Consensus 158 ~~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~ 233 (279)
T PRK10019 158 HERAHANDIKRRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGA 233 (279)
T ss_pred HHhhccchhhhhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 01122334578888886 899877643 44455678999999999999999999999988776
Q ss_pred H-HHH-HHhhhhhhhhhHH---HHHHHHHHHHHHHHHhhhh
Q 019423 299 G-ALQ-SLLSFRKFSSWIN---PMSGALLLGGGLYTFLDRL 334 (341)
Q Consensus 299 ~-~l~-~~~~~~k~~~~i~---~isGilLI~~Giy~ll~~~ 334 (341)
. ..+ ..++..+..++++ .++|++.+++|+|+.++.+
T Consensus 234 ~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~ 274 (279)
T PRK10019 234 AISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGF 274 (279)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 232 2233344455555 8999999999999988655
No 8
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.5e-08 Score=90.58 Aligned_cols=158 Identities=22% Similarity=0.179 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhhhhchhhhhchHHhhhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHH--hhcc-chhHHHHHHH
Q 019423 49 TNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLG--QLSA-LSFTSLAVIF 125 (341)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~--~L~~-~~~~~l~~af 125 (341)
.+++.-.+.++..-...-.-+..+++++..|+..+..+.|.+.+.+| +-+++...-+..++ +.+- ....+..-.|
T Consensus 53 ~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~gi~li~~G--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (220)
T COG0785 53 LASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLG--LLFLGVLRLPLLLRFARFQLKGKSVTALGAF 130 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhcchhhhccCCCcchhHH
Confidence 34444444444444455566778899999999988999999999999 55555443222222 2111 1145567788
Q ss_pred HHHHhhCC--CCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHH
Q 019423 126 GAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK----AYGQIGTGLPLA 199 (341)
Q Consensus 126 laGll~sl--sPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~----~l~~~~~~l~~i 199 (341)
..|+..++ +||+.|.+..+++.... +++-.++.....+|++|..++|.+++.+.+.+.+ .+.++.+.+.++
T Consensus 131 ~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~ 207 (220)
T COG0785 131 LLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIV 207 (220)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988877 89999999999888663 2334456777889999999999999999998776 355677788999
Q ss_pred HHHHHHHHHHHH
Q 019423 200 ASGLAIVMGLNL 211 (341)
Q Consensus 200 ~GillIl~GL~l 211 (341)
.|++++.+|+.+
T Consensus 208 ~G~lli~~Gv~l 219 (220)
T COG0785 208 GGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 9
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=98.78 E-value=1.7e-07 Score=85.86 Aligned_cols=141 Identities=24% Similarity=0.210 Sum_probs=101.4
Q ss_pred hhhhchHHhhhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHH-hh----ccchhHHHHHHHHHHHhhCC--CCCccc
Q 019423 67 AKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLG-QL----SALSFTSLAVIFGAGLVTSL--SPCTLS 139 (341)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~-~L----~~~~~~~l~~aflaGll~sl--sPCvlp 139 (341)
.-+...++++++....+..+.|.+.+.++ +..++....+..++ +. +.+....+..+|+.|+..++ +||+.|
T Consensus 60 ~~~~~~g~~~~~~~~~~~~i~g~~~i~~G--l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p 137 (211)
T PF02683_consen 60 LGAGALGSFFGQISPWLYIIAGVLLILFG--LSLLGLFEIPFLSRPRLGLRSKRKSGGGLLGAFLLGLLFGLVWSPCTGP 137 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcchhhhhhhhhhhhhcCCCCCcccHHHHHHHHHHHhhhcchH
Confidence 34567788998888888889999999999 66665443222221 11 11122334567777777655 799999
Q ss_pred hHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHH
Q 019423 140 VLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK---AYGQIGTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 140 ~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~---~l~~~~~~l~~i~GillIl~GL~lL 212 (341)
++..++++...+ ++..+....-..|.+|+.+++.+++.....+.+ .+.++.++++++.|++++.+|+.++
T Consensus 138 ~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 138 ILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887642 333455666789999999999999998887663 3455667789999999999999875
No 10
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=98.54 E-value=1.6e-05 Score=73.24 Aligned_cols=193 Identities=19% Similarity=0.164 Sum_probs=119.6
Q ss_pred HHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHH
Q 019423 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--------GTGLPL 198 (341)
Q Consensus 127 aGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~--------~~~l~~ 198 (341)
.++..+++|=.+... +..+.+ .+ ..++.++|.+|..+.|...|+..-...+..... ..++.+
T Consensus 4 LAl~~a~sP~~i~~~---vlll~~---~r----~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (214)
T PF11139_consen 4 LALVDALSPLPIVIA---VLLLSR---PR----PRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQL 73 (214)
T ss_pred HHHHHHhChHHHHHH---HHHhcC---CC----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHH
Confidence 456667777653332 222221 12 234578999999999999998887666654311 234566
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHH
Q 019423 199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 278 (341)
Q Consensus 199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~l 278 (341)
+.|++++++|......-+ -+....+..+...+.+..+..+++.+|+..+++..+...|++.++......+-++..-..
T Consensus 74 ~lGv~ll~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~ 151 (214)
T PF11139_consen 74 VLGVLLLLLAVRVWRRRP--RPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVV 151 (214)
T ss_pred HHHHHHHHHHHHHhhccc--ccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 777777777776652210 000000011111122345567789999999998888877777666666666678888899
Q ss_pred HHHHHHhhHHHHHHHHHHH----HHHHHHHhhhhhhhhhH----HHHHHHHHHHHHHHHHhhh
Q 019423 279 LLLSYTTGYVAPLLLAASF----AGALQSLLSFRKFSSWI----NPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 279 lll~fgLG~~lPLlll~~~----~~~l~~~~~~~k~~~~i----~~isGilLI~~Giy~ll~~ 333 (341)
.+..|.+-+..|..+.... ..+.+ .+.+|.++|+ +.+.++++.+.|+|++.+.
T Consensus 152 ~l~~y~~i~~~~~~~pll~~~~~~~r~~--~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G 212 (214)
T PF11139_consen 152 ALVVYCLIASLPALLPLLAYLVAPERAE--PWLERLRSWLRRHSRQILAVILLIVGALLLGDG 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 9999999998887653322 22222 2233444444 5568889999999977653
No 11
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.36 E-value=0.00073 Score=65.46 Aligned_cols=207 Identities=23% Similarity=0.245 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HH--HHH
Q 019423 117 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFAG-KA--YGQ 191 (341)
Q Consensus 117 ~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~--f~lG~~lty~lLG~~~~~lG-~~--l~~ 191 (341)
.|..+..+|+-|.+-++.|=-.=.+ ..+|+.+.+ .+-++....+++ ..=|. +...+++++.+... .. +..
T Consensus 54 ~w~li~~SflyGvlHAlgPGHgKav--iasylia~~--~~lk~~ilLsf~~sllqG~-~Av~l~~~~~~v~~~~s~~~~~ 128 (303)
T COG2215 54 GWTLIPLSFLYGVLHALGPGHGKAV--IATYLIAHK--ATLKRAILLSFLASLLQGL-TAVVLLLAFLGVLRLSSITFAL 128 (303)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHH--HHHHHHhcc--cchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhHHhh
Confidence 4677778999999999998865432 456766532 222233322222 11121 23333333333222 22 334
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-hh-h--hccc--ccc---------------------ccchhhhhcCCCChHHHHHH
Q 019423 192 IGTGLPLAASGLAIVMGLNLLEI-IE-L--QLPS--FFD---------------------NFDPRAAAANFPSSVQAYLA 244 (341)
Q Consensus 192 ~~~~l~~i~GillIl~GL~lLg~-~~-l--~lp~--~~~---------------------~~~~~~~~~~~~~~~~afll 244 (341)
...++.++..++++.+|+.++-. ++ + +-|+ ... ..+++. ..+.......+..
T Consensus 129 s~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~-~~~~~~~~~~~~~ 207 (303)
T COG2215 129 SEPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKR-LGQAVDWKQQWLF 207 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHH-hcccccHHHHHHH
Confidence 45677889999999999998822 11 1 1021 000 011111 1233445567888
Q ss_pred hHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-Hhh-------hhhhhhhHHH
Q 019423 245 GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQS-LLS-------FRKFSSWINP 316 (341)
Q Consensus 245 Gll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~-~~~-------~~k~~~~i~~ 316 (341)
|+..|+ .||.+.+. +|..+.+.+-...|++..+++++|+++++-..+...-..|. ..+ -+|+...+..
T Consensus 208 ~l~~GL--rPCpgAi~--VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l 283 (303)
T COG2215 208 GLTGGL--RPCPGAIF--VLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSL 283 (303)
T ss_pred HHHhcC--ccCcHHHH--HHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 898887 99987774 35556667889999999999999999998777765544331 111 1233445666
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019423 317 MSGALLLGGGLYTFLDR 333 (341)
Q Consensus 317 isGilLI~~Giy~ll~~ 333 (341)
+.|.+++.+|+..++..
T Consensus 284 ~~gli~l~~g~~~l~~~ 300 (303)
T COG2215 284 LGGLIGLYFGLHLLLGS 300 (303)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888766543
No 12
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=98.07 E-value=0.00083 Score=60.02 Aligned_cols=164 Identities=21% Similarity=0.219 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCC
Q 019423 160 IIGDSIAFSLGLATTLALLGVGASFAGKAY----GQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 235 (341)
Q Consensus 160 ~~~~~l~f~lG~~lty~lLG~~~~~lG~~l----~~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~ 235 (341)
+++.++...+|..+...+...++......+ .....++.++.+..++.+|..++..-+ +... + .....+.
T Consensus 22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~~--~-~~~~~~~ 94 (191)
T PF01810_consen 22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSKS--S-TQSEAKK 94 (191)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccch--h-hhhhhcc
Confidence 455577788888887777776655443333 234456788888889999998873211 0000 0 0000113
Q ss_pred CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 019423 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 314 (341)
Q Consensus 236 ~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i 314 (341)
.+....|..|+...+ .-|=+-+.+.++...... +.+...........-++........+...++.++..+.++.+ ++
T Consensus 95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i 172 (191)
T PF01810_consen 95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI 172 (191)
T ss_pred ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 456778888888887 455544444444443333 223333344444555565566666666666654332333344 99
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019423 315 NPMSGALLLGGGLYTFLD 332 (341)
Q Consensus 315 ~~isGilLI~~Giy~ll~ 332 (341)
++++|++++.+|++++++
T Consensus 173 ~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 173 NRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998875
No 13
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=98.06 E-value=0.0019 Score=58.76 Aligned_cols=191 Identities=18% Similarity=0.097 Sum_probs=99.2
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhhhHHH
Q 019423 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPL 198 (341)
Q Consensus 123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG-~~l~---~~~~~l~~ 198 (341)
..+...+...++| +|-.-.++.... +++.+.+..+.+|..+.+.+.-.+..... ..+. .....+++
T Consensus 8 ~~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~ 77 (205)
T PRK10520 8 AYLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKW 77 (205)
T ss_pred HHHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444566666777 454433333321 13455677788888887777665543322 2222 33445677
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh-HH-
Q 019423 199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IG- 276 (341)
Q Consensus 199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~-~G- 276 (341)
+.+..++.+|..++.- + |.... +. . .+.++..+.|.-|+...+ .-|=+-..+.+++..-...+++. ..
T Consensus 78 ~Ga~YL~~lg~~~~~s---~-~~~~~--~~-~--~~~~~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~ 147 (205)
T PRK10520 78 AGAAYLIWLGIQQWRA---A-GAIDL--HT-L--ASTQSRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQY 147 (205)
T ss_pred HHHHHHHHHHHHHHhC---C-Ccccc--cc-c--cCCccHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHH
Confidence 7888888999988732 1 11100 00 0 011222356778887776 45554333334443322222222 22
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423 277 GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 277 ~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~ 333 (341)
..+...+.+-...-....+.+.++.++..+.+|+.+++++++|.+++.+|+++.++|
T Consensus 148 ~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~~~~l~~~~ 204 (205)
T PRK10520 148 LVLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASAR 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 212222221111122223334445544445567778999999999999999987654
No 14
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.89 E-value=0.00018 Score=75.73 Aligned_cols=138 Identities=20% Similarity=0.124 Sum_probs=86.4
Q ss_pred chHHhhhhh--hhHHHHhcchhhhhhhhHhhhhhhhh---HHHHHHhhcc----chhHHHHHHHHHHHhhCC--CCCccc
Q 019423 71 TMENVLEGA--ASVYTMADGSLGDMFGGFLYSAGQQA---NEAVLGQLSA----LSFTSLAVIFGAGLVTSL--SPCTLS 139 (341)
Q Consensus 71 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~l~~~g~~~---~~~~~~~L~~----~~~~~l~~aflaGll~sl--sPCvlp 139 (341)
-+|..|... +.++....+.+.+.++ +.-.|.+. ....++++.. ..--.+..+|+.|+++++ +||+.|
T Consensus 232 ~~G~~~~~~~q~~~~~~~~~~l~v~lg--L~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p 309 (571)
T PRK00293 232 AAGLQFQAALQHPYVLIGLSILFVLLA--LSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTA 309 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchH
Confidence 356656432 3455566677777777 43333221 1111222110 111235678888988877 499999
Q ss_pred hHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019423 140 VLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLE 213 (341)
Q Consensus 140 ~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lLg 213 (341)
.+..++.++.. ..+...+...-.+|.+|..++|.++|...+.+....+.+.+.+..+.|++++.+|+.++.
T Consensus 310 ~L~~~L~~aa~---tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 310 PLSGALLYIAQ---SGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888653 234444555668899999999999998754332222233345678999999999999884
No 15
>PRK09304 arginine exporter protein; Provisional
Probab=97.87 E-value=0.0084 Score=54.89 Aligned_cols=195 Identities=12% Similarity=-0.019 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhH
Q 019423 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF----AGKAYGQIGTGL 196 (341)
Q Consensus 121 l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~----lG~~l~~~~~~l 196 (341)
++..+..|+..+++|= |..-.++..-. +++. ++....|..+...+...+... +-+........+
T Consensus 5 ~~~g~~~g~~~~~tPG--P~~~~v~~~~~------~~~~----~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l 72 (207)
T PRK09304 5 YFQGFALGAAMILPLG--PQNAFVMNQGI------RRQY----HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALV 72 (207)
T ss_pred HHHHHHHHHHHHhccC--hHHHHHHHHHH------cccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888763 33333332211 1222 445566666555555443322 222223334556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHH
Q 019423 197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 276 (341)
Q Consensus 197 ~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G 276 (341)
.++.+.-++.+|..++.--+ + ++. ..+.+. .+.++..+.|.-|+...+ .-|=+--.+.++......+.++...
T Consensus 73 ~~~Ga~YLlyLg~~~~rs~~-~-~~~--~~~~~~--~~~~~~~~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~ 145 (207)
T PRK09304 73 TWGGVAFLLWYGFGAFKTAM-S-SNI--ELASAE--VMKQGRWKIIATMLAVTW-LNPHVYLDTFVVLGSLGGQLDVEPK 145 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c-ccc--cccccc--ccCccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhccCcchh
Confidence 77788888889998873210 0 100 000000 111233467888888876 3555421111222211111122111
Q ss_pred H-HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 019423 277 G-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLF 335 (341)
Q Consensus 277 ~-llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~~ 335 (341)
. ..+... .....-....+....+.++..+.+|+.+|+++++|.+++.+|+++..+++.
T Consensus 146 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 146 RWFALGTI-SASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 111111 111122223334444444444445788899999999999999998877654
No 16
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=97.83 E-value=0.012 Score=54.18 Aligned_cols=195 Identities=23% Similarity=0.181 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 019423 119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGA----SFAGKAYGQIGT 194 (341)
Q Consensus 119 ~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~----~~lG~~l~~~~~ 194 (341)
..++..+.+.+....+| +|..-.+++.... + ++++++...+|..+...+.-.++ +.+-.......+
T Consensus 4 ~~~l~~~~~~~~~~~~P--GP~~~~v~~~~~~----~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~ 73 (208)
T COG1280 4 TNLLAFLLAALVLAATP--GPDNLLVLARSLS----R----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFT 73 (208)
T ss_pred HHHHHHHHHHHHHhcCC--CccHHHHHHHHHH----h----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455566666667664 5655445444321 2 23344555555544333332222 222233333445
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh
Q 019423 195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 274 (341)
Q Consensus 195 ~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~ 274 (341)
.+.++.+.-++.+|..++.--+ +.. +.+. ..+.+..+ .+.|.-|++..+ .-|=.--.+.+++......+.+.
T Consensus 74 ~lk~~GaaYL~ylg~~~~ra~~---~~~--~~~~-~~~~~~~~-~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~ 145 (208)
T COG1280 74 VLKLAGAAYLLYLGWKALRAGG---AAL--AEEA-AGAPSSSR-RKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGL 145 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---ccc--cccc-cccccchh-HHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCch
Confidence 6788888888999998873211 000 0000 00001111 367889998887 46665444556666554433332
Q ss_pred HHHHHHHHHHhhHH---HHHH-HHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423 275 IGGTLLLSYTTGYV---APLL-LAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 275 ~G~llll~fgLG~~---lPLl-ll~~~~~~l~~-~~~~~k~~~~i~~isGilLI~~Giy~ll~~ 333 (341)
. ...++..++.+. .+.. ..+......++ .++ ++..+|+++..|.+++..|+++.+.+
T Consensus 146 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 146 V-LLQALILGLVFILVGFVVLALYALLAARLRRLLRR-PRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 122222222221 2222 12222223333 334 67999999999999999999987754
No 17
>PRK10229 threonine efflux system; Provisional
Probab=97.77 E-value=0.015 Score=52.84 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhhhhHHH
Q 019423 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA-GKAYG---QIGTGLPL 198 (341)
Q Consensus 123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~l-G~~l~---~~~~~l~~ 198 (341)
..++.++...++| +|..-.++.... + ++.+.+....+|......+...++... +..+. ...+.+.+
T Consensus 7 ~~~~~~~~~~~sP--GP~~~~vi~~~~----~----~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~ 76 (206)
T PRK10229 7 TVAMVHIVALMSP--GPDFFFVSQTAV----S----RSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMV 76 (206)
T ss_pred HHHHHHHHHhcCC--CchhHHHHHHHH----h----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456677777777 454433333211 1 234456677778777766655443322 22222 33455677
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHH
Q 019423 199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 278 (341)
Q Consensus 199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~l 278 (341)
+.+..++.+|..++.--+ + + . +..++.. ..+.++....|.-|++..+ .-|=+-..+.+++..-........ .
T Consensus 77 ~Ga~yLlylg~~~~~~~~-~-~-~-~~~~~~~-~~~~~~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~~~~~~-~- 148 (206)
T PRK10229 77 GGGLYLCWMGYQMLRGAL-K-K-E-DVAAEEP-QVELAKSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGDNVGAG-A- 148 (206)
T ss_pred HHHHHHHHHHHHHHHhcc-c-c-c-ccccccc-cccCccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCcHH-H-
Confidence 777788889988873210 0 0 0 0000000 0011233456888988887 466654444454443322211111 1
Q ss_pred HHHHHHhhHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423 279 LLLSYTTGYVA----PLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 279 lll~fgLG~~l----PLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~ 333 (341)
...+..+..+ -....+.........+..+|+.+|+++++|++++.+|++++++|
T Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~g~~li~~~i~l~~~~ 206 (206)
T PRK10229 149 -RWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR 206 (206)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1222222211 11112221111111122347788999999999999999987654
No 18
>PRK10958 leucine export protein LeuE; Provisional
Probab=97.73 E-value=0.021 Score=52.59 Aligned_cols=184 Identities=14% Similarity=0.070 Sum_probs=87.9
Q ss_pred HhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHH
Q 019423 129 LVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS----FAGKAYGQIGTGLPLAASGLA 204 (341)
Q Consensus 129 ll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~----~lG~~l~~~~~~l~~i~Gill 204 (341)
++..++| +|..-.++.... ++.+ ++++.+.+|..+.+.+...+.. .+.+......+.++++.+..+
T Consensus 18 ~~~~~sP--GP~~~~v~~~~~----~~G~----r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL 87 (212)
T PRK10958 18 IFIVLLP--GPNSLYVLSTAA----RRGV----KAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYL 87 (212)
T ss_pred HHHhcCC--chHHHHHHHHHH----hhCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3345677 666655544422 1223 3455666676666665554443 222333334556788888888
Q ss_pred HHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhc-CC-hhHHH-HHHH
Q 019423 205 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-KD-PLIGG-TLLL 281 (341)
Q Consensus 205 Il~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~s-gs-~~~G~-llll 281 (341)
+.+|..++.- +........+ .+.++..+.|.-|+...+ .-|=+--.+.++...-... .+ ..... .+..
T Consensus 88 ~~la~~~~~~---~~~~~~~~~~-----~~~~~~~~~f~~g~~~~l-~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l~~ 158 (212)
T PRK10958 88 LYLGVKMLRA---ALRRWRRRAA-----SAAPPYGAPFRRALILSL-TNPKAILFFVSFFVQFVDPNYAHPALSFLILAT 158 (212)
T ss_pred HHHHHHHHHh---hccccccccc-----ccCcchhHHHHHHHHHHh-hChHHHHHHHHHHhcccCCCCcchHHHHHHHHH
Confidence 8999887732 1100000000 011122346788877775 3443321222333222121 11 11111 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423 282 SYTTGYVAPLLLAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFL 331 (341)
Q Consensus 282 ~fgLG~~lPLlll~~~~~~l~~-~~~~~k~~~~i~~isGilLI~~Giy~ll 331 (341)
.+.+....-....+....++++ .++.+|+.+|++++.|++++.+|+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~ 209 (212)
T PRK10958 159 ILQLVSFCYLSFLIFSGARLAAYFRRRKKLAAGGNSLVGLLFVGFAAKLAT 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1211111111122223333432 2334567789999999999999998754
No 19
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=97.52 E-value=0.026 Score=50.26 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCC
Q 019423 160 IIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 235 (341)
Q Consensus 160 ~~~~~l~f~lG~~lty~lLG~~~~~-lG~~l~---~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~ 235 (341)
+.+.++.+.+|..+.+.+.-.++.. ++..+. .....+.++.+..++.+|..++.-- .+.. +..+++. ..+.
T Consensus 17 G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~---~~~~-~~~~~~~-~~~~ 91 (185)
T TIGR00949 17 GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK---SKKQ-SPAAQVE-LAEQ 91 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc---cccc-ccccccc-cccC
Confidence 4556777888888777776655543 233333 3345678888888899999877310 0000 0000000 0111
Q ss_pred CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCCh-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 019423 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP-LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 314 (341)
Q Consensus 236 ~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~-~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i 314 (341)
++..+.|.-|+...+ .-|=+-..+.+++..-...+.. ..-..+.....+....-....+....+.++.++.+++.+++
T Consensus 92 ~~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (185)
T TIGR00949 92 TTWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWI 170 (185)
T ss_pred ccHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 233457888888876 3554322333333322221111 11112222222222222233333344443333456788999
Q ss_pred HHHHHHHHHHHHHH
Q 019423 315 NPMSGALLLGGGLY 328 (341)
Q Consensus 315 ~~isGilLI~~Giy 328 (341)
++++|++++.+|+.
T Consensus 171 n~~~g~~l~~~~v~ 184 (185)
T TIGR00949 171 DGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
No 20
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=97.31 E-value=0.12 Score=46.79 Aligned_cols=176 Identities=12% Similarity=0.032 Sum_probs=83.3
Q ss_pred HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhhhHHHHHHHH
Q 019423 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLAASGL 203 (341)
Q Consensus 128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG-~~l~---~~~~~l~~i~Gil 203 (341)
.+...++| +|-.-.++..-. + ++.++++...+|..+.+.+...+..... .... ...+.++++.+.-
T Consensus 13 ~~~~~~sP--GP~~~~v~~~~~----~----~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~Y 82 (195)
T PRK10323 13 TLITAMTP--GPNNILALSSAT----S----HGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAY 82 (195)
T ss_pred HHHHhCCC--ChHHHHHHHHHH----H----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677 555444443322 1 2233455666777766666644433222 2222 2334567777777
Q ss_pred HHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh-HHH-HHHH
Q 019423 204 AIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IGG-TLLL 281 (341)
Q Consensus 204 lIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~-~G~-llll 281 (341)
++.+|..++.- + +. ++ +. .+++ ..|.-|+...+ .-|=+-..+.+++..-...+.+. .-. .+..
T Consensus 83 LlyLg~~~~~s---~-~~--~~-~~----~~~~---~~f~~G~~~~l-~NPKa~lf~~a~~~~f~~~~~~~~~~~~~l~~ 147 (195)
T PRK10323 83 IVWLAWKIATS---P-TK--ED-GL----QAKP---ISFWASFALQF-VNVKIILYGITALSTFVLPQTQALSWVVGVSV 147 (195)
T ss_pred HHHHHHHHHhc---c-Cc--cc-cC----CCCC---hhHHHHHHHHh-HCHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 88899887621 1 11 00 00 0111 24667777765 34444223334444333221221 111 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423 282 SYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF 330 (341)
Q Consensus 282 ~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~l 330 (341)
.+.+....-....+.....+++ ..+|+++|+++++|.+++.+|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~l~~~a~~l~ 194 (195)
T PRK10323 148 LLAMIGTFGNVCWALAGHLFQR--LFRQYGRQLNIVLALLLVYCAVRIF 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111122222233332 2346778999999999999999765
No 21
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=96.98 E-value=0.073 Score=49.07 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 019423 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 207 (341)
Q Consensus 128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~ 207 (341)
.+..-++| ...+|.+++...+. +.++|++..++...+.....+.|...|-.. -+.++-..+.+++.+|+++.++
T Consensus 10 ~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~i---L~~fgIsl~af~IaGGiiL~~i 83 (203)
T PF01914_consen 10 TLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLI---LNFFGISLPAFRIAGGIILFLI 83 (203)
T ss_pred HHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHH
Confidence 44444455 34678888776543 345666777788788887777777777332 2344433456789999999999
Q ss_pred HHHHH
Q 019423 208 GLNLL 212 (341)
Q Consensus 208 GL~lL 212 (341)
|+.|+
T Consensus 84 a~~ml 88 (203)
T PF01914_consen 84 ALEML 88 (203)
T ss_pred HHHHh
Confidence 99998
No 22
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=96.81 E-value=0.065 Score=50.32 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcC
Q 019423 155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234 (341)
Q Consensus 155 ~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~ 234 (341)
-+||+.......|.++..+...+.+-.--..-+.+.++..+...+.+.+++..|+.....++.+ ++
T Consensus 29 ls~k~~~~i~~~Y~~l~~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W~~~--------------~~ 94 (224)
T PF09930_consen 29 LSRKEIALIALGYGLLFLLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKWKKS--------------GK 94 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccc--------------CC
Confidence 3566665666666665554433333332222223334445567788888888888877433210 00
Q ss_pred CCChHHHHHHhHHhhhccCCCchH-HHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019423 235 FPSSVQAYLAGLTFALAASPCSTP-VLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSW 313 (341)
Q Consensus 235 ~~~~~~afllGll~gL~~~PC~gP-il~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~ 313 (341)
..+.. .+ ..-...|||+.. +.++....+...+.... ..|+..++-+++........- |+.+..
T Consensus 95 ~~s~~-t~----lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~------~ig~~~g~if~i~il~ss~i~-----r~~~~~ 158 (224)
T PF09930_consen 95 DSSRR-TF----LALSLPCPVCLTAIFFSIMLLAPSIGLSGW------EIGLVLGLIFFILILLSSFIF-----RRLKKP 158 (224)
T ss_pred CCccc-ch----hhhhcCchHHHHHHHHHHHHHHHhcCchHH------HHHHHHHHHHHHHHHHHHHHH-----HHhcCC
Confidence 01111 11 122345777633 33444333332221111 112222233333323333331 122323
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hccc
Q 019423 314 INPMSGALLLGGGLYTFLDR-LFPT 337 (341)
Q Consensus 314 i~~isGilLI~~Giy~ll~~-~~p~ 337 (341)
-..+.|-+|+..|+|+++.- +.|+
T Consensus 159 ~p~~LG~~Mi~~GlyfLl~aliiPn 183 (224)
T PF09930_consen 159 YPIILGNFMIFLGLYFLLSALIIPN 183 (224)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578899999999988544 5554
No 23
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.73 E-value=0.58 Score=44.75 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423 118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 191 (341)
Q Consensus 118 ~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~ 191 (341)
+..+..+|+.|+.-++.|=-+-.+ +.+|..+ +++..+.++.+.+|-.++-.+.+++...+...+.+
T Consensus 2 l~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~ 67 (282)
T PF03824_consen 2 LSLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE 67 (282)
T ss_pred HHHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345778999999999998776655 5566542 11234567788888888888888777666555443
No 24
>PRK10995 inner membrane protein; Provisional
Probab=96.70 E-value=0.11 Score=48.36 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 019423 125 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA 204 (341)
Q Consensus 125 flaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~Gill 204 (341)
...++..-++| ...+|.+++...+. +.++|++..++...+.....+.+...|-.. -++++...+.+++.+|+++
T Consensus 11 ~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~i---l~~fgIs~~a~rIaGGilL 84 (221)
T PRK10995 11 GLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLV---MSTFGISIPGLRIAGGLIV 84 (221)
T ss_pred HHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHH
Confidence 33455555555 45678888876543 334566666777777777766666666332 2444444456899999999
Q ss_pred HHHHHHHH
Q 019423 205 IVMGLNLL 212 (341)
Q Consensus 205 Il~GL~lL 212 (341)
..+|+.|+
T Consensus 85 ~~igi~ml 92 (221)
T PRK10995 85 AFIGFRML 92 (221)
T ss_pred HHHHHHHh
Confidence 99999997
No 25
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=96.67 E-value=0.44 Score=43.92 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=55.1
Q ss_pred HHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019423 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV 206 (341)
Q Consensus 127 aGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl 206 (341)
..+..-++| ...+|.+++...+. +.++|++..++...+.....+.|...|-. +-+.++-..+.+++.+|+++.+
T Consensus 12 ~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~---iL~~fgIsl~afrIaGGiiL~~ 85 (201)
T TIGR00427 12 ISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDT---ILKLFGISIDAFRIAGGILLFT 85 (201)
T ss_pred HHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHH
Confidence 344444555 45678888876543 33456667777877888777788777743 2244444445688999999999
Q ss_pred HHHHHH
Q 019423 207 MGLNLL 212 (341)
Q Consensus 207 ~GL~lL 212 (341)
.|+.|+
T Consensus 86 ia~~ml 91 (201)
T TIGR00427 86 IAMDML 91 (201)
T ss_pred HHHHHh
Confidence 999997
No 26
>PRK11111 hypothetical protein; Provisional
Probab=96.55 E-value=0.23 Score=46.32 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019423 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI 205 (341)
Q Consensus 126 laGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillI 205 (341)
...+..-++| ...+|.+++...+. +.++|++..++...+.....+.|...|-. +-++++-....+++.+|+++.
T Consensus 14 ~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~---iL~~fGIsl~afrIaGGiiL~ 87 (214)
T PRK11111 14 FIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDF---ILNLFGISIDSFRIAGGILVV 87 (214)
T ss_pred HHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHH
Confidence 3455555555 45679999876543 33456667777777777777777777632 223444334567899999999
Q ss_pred HHHHHHH
Q 019423 206 VMGLNLL 212 (341)
Q Consensus 206 l~GL~lL 212 (341)
.+|+.|+
T Consensus 88 ~ial~Ml 94 (214)
T PRK11111 88 TIAMSMI 94 (214)
T ss_pred HHHHHHh
Confidence 9999997
No 27
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=96.52 E-value=0.044 Score=49.78 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 019423 120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA 199 (341)
Q Consensus 120 ~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i 199 (341)
.....|..|++.++.||. ++.+....... +.|..++.....+|.+|.+.....+|.....+.+..+ +.+..+
T Consensus 117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~ 188 (199)
T PF13386_consen 117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL 188 (199)
T ss_pred CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 456788999999999995 44444332222 2355567778899999999999999988877766554 334457
Q ss_pred HHHHHHHHHH
Q 019423 200 ASGLAIVMGL 209 (341)
Q Consensus 200 ~GillIl~GL 209 (341)
.+++++++|+
T Consensus 189 ~g~~~i~~G~ 198 (199)
T PF13386_consen 189 AGVLLIILGI 198 (199)
T ss_pred HHHHHHHHHH
Confidence 8888888886
No 28
>TIGR00948 2a75 L-lysine exporter.
Probab=96.14 E-value=0.46 Score=42.10 Aligned_cols=151 Identities=13% Similarity=0.020 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChH
Q 019423 164 SIAFSLGLATTLALLGVGASFAGK-AYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV 239 (341)
Q Consensus 164 ~l~f~lG~~lty~lLG~~~~~lG~-~l~---~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~ 239 (341)
++...+|..+...+.-.+...... .+. ...+.+.++.+..++.+|..++.--+ +.+. + .+.. ..+.++..
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~~--~-~~~~--~~~~~~~~ 95 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGPG--A-LVPD--EPKKMGLK 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc--c-cccc--cccccCHH
Confidence 566677777766666554443222 333 23445678888888999998873211 1000 0 0000 01112334
Q ss_pred HHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 019423 240 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG 319 (341)
Q Consensus 240 ~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isG 319 (341)
+.|.-|+...+ .-|=+...+.++......+.....-..+...+.+...+-....+.+.++.++..+.+|..+|++++.|
T Consensus 96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g 174 (177)
T TIGR00948 96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIINLVVA 174 (177)
T ss_pred HHHHHHHHHHH-hCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh
Confidence 67888998886 46665322222222222221111111111111111111222223333444444445577789999888
Q ss_pred HH
Q 019423 320 AL 321 (341)
Q Consensus 320 il 321 (341)
++
T Consensus 175 ~~ 176 (177)
T TIGR00948 175 VV 176 (177)
T ss_pred hc
Confidence 65
No 29
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.51 Score=43.70 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=54.1
Q ss_pred HhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019423 129 LVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMG 208 (341)
Q Consensus 129 ll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~G 208 (341)
+....+|= ..+|.+++...+. +.++|++..++...|.+.....|...|-..- +.++.....+++..|+++..+|
T Consensus 14 Lf~i~dP~--G~ipvf~slt~~~-~~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~ia 87 (203)
T COG2095 14 LFAIIDPI--GNLPVFISLTKGL-SPEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLIA 87 (203)
T ss_pred HHHHhCCC--chhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHHH
Confidence 33334554 2457777765443 3456777888898999999888888884432 3443334567899999999999
Q ss_pred HHHH
Q 019423 209 LNLL 212 (341)
Q Consensus 209 L~lL 212 (341)
+.|+
T Consensus 88 ~~ml 91 (203)
T COG2095 88 LRML 91 (203)
T ss_pred HHHh
Confidence 9998
No 30
>PRK10739 putative antibiotic transporter; Provisional
Probab=95.94 E-value=0.71 Score=42.52 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 019423 128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 207 (341)
Q Consensus 128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~ 207 (341)
.+..-.+| ...+|.+++...+. +.++|++..++...+.....+.|...|-. +-+.++-....+++..|+++.++
T Consensus 10 ~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~---iL~~fGIsl~afrIAGGilL~~i 83 (197)
T PRK10739 10 LLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEK---ILAFLNLRTETVSISGGIILFLI 83 (197)
T ss_pred HHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHH
Confidence 34444444 45678888876543 34456666777777777777777777632 22444433456889999999999
Q ss_pred HHHHH
Q 019423 208 GLNLL 212 (341)
Q Consensus 208 GL~lL 212 (341)
|+.|+
T Consensus 84 al~ml 88 (197)
T PRK10739 84 AIKMI 88 (197)
T ss_pred HHHHh
Confidence 99997
No 31
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.71 E-value=0.014 Score=61.13 Aligned_cols=90 Identities=24% Similarity=0.206 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhCC--CCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh
Q 019423 120 SLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGT 194 (341)
Q Consensus 120 ~l~~aflaGll~sl--sPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~---~~~ 194 (341)
++..+|.+|.++.+ +||+-|-+...+.|+... .+-..+...-.++.+|+.++|.++|++- ++.+-+ +++
T Consensus 289 ~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqs---g~~~~g~~~l~al~LGMg~Plllv~~f~---~~~LPk~G~WM~ 362 (569)
T COG4232 289 SIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQS---GNALLGGLALYALGLGMGLPLLLIGVFG---NRLLPKPGPWMN 362 (569)
T ss_pred chHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhc---chHHHHHHHHHHHHHhcccchhhheecc---cccCCCCCcHHH
Confidence 37788999999877 899999999999998743 2333344444567889999999998765 444433 344
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 019423 195 GLPLAASGLAIVMGLNLLEII 215 (341)
Q Consensus 195 ~l~~i~GillIl~GL~lLg~~ 215 (341)
.++.+.|.+|+...++++.++
T Consensus 363 ~vK~~fGFvlLa~aiwLl~~~ 383 (569)
T COG4232 363 TVKQAFGFVLLATAIWLLWRV 383 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888988888888887543
No 32
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=95.40 E-value=0.45 Score=43.68 Aligned_cols=142 Identities=16% Similarity=0.159 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHhhhh------ccccccccc
Q 019423 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQ------LPSFFDNFD 227 (341)
Q Consensus 161 ~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~-------~~l~~i~GillIl~GL~lLg~~~l~------lp~~~~~~~ 227 (341)
......|..|-..+-...|+.+..+...+.... ..-+++.+.++++.|+..+.-+|.. -|..+
T Consensus 36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f---- 111 (191)
T PF09948_consen 36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSF---- 111 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchH----
Confidence 455788999999999999998877766554321 1235778888899999988555431 12110
Q ss_pred hhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 019423 228 PRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSF 307 (341)
Q Consensus 228 ~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~ 307 (341)
....-+++..+++-+|+-.|+.-..|+-++....+ +. |.....-+.+++.+. ...|.
T Consensus 112 --~~~~wr~g~~~alr~Gl~hG~~CvGCCWaLMllmf--v~---------------G~mnl~wMa~lt~~~----~~EK~ 168 (191)
T PF09948_consen 112 --LAFHWRAGARGALRMGLRHGLYCVGCCWALMLLMF--VV---------------GVMNLAWMAALTALM----FAEKL 168 (191)
T ss_pred --hhcCCCcccchHHHHHHHHccHHHHHHHHHHHHHH--Hh---------------ccccHHHHHHHHHHH----HHHHh
Confidence 00112345788999999999988888855433221 22 222222222222211 11234
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 019423 308 RKFSSWINPMSGALLLGGGLYT 329 (341)
Q Consensus 308 ~k~~~~i~~isGilLI~~Giy~ 329 (341)
..+++++.+..|+.+++.|+.+
T Consensus 169 ~p~g~~l~r~~G~~l~~~g~~l 190 (191)
T PF09948_consen 169 LPWGRRLSRAVGVALIVWGVLL 190 (191)
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999874
No 33
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=93.90 E-value=0.67 Score=44.98 Aligned_cols=84 Identities=29% Similarity=0.333 Sum_probs=58.8
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HhhhhH
Q 019423 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-AYG------QIGTGL 196 (341)
Q Consensus 124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~-~l~------~~~~~l 196 (341)
.+..|+..++-||..++.-++++... +.-..+....++|.+|.+++.+.+|+++....+ ... ...+..
T Consensus 180 ~l~igl~~Gl~PCpgAl~VLL~a~~l-----g~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~ 254 (279)
T PRK10019 180 ILLFGLTGGLIPCPAAITVLLICIQL-----KALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA 254 (279)
T ss_pred hhHHHHHhccCCCHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35678888889998877655554432 233356778899999999999999998753322 211 122345
Q ss_pred HHHHHHHHHHHHHHHH
Q 019423 197 PLAASGLAIVMGLNLL 212 (341)
Q Consensus 197 ~~i~GillIl~GL~lL 212 (341)
+++.+.+.+++|+.+.
T Consensus 255 p~~s~~l~i~~G~~~~ 270 (279)
T PRK10019 255 PYFSSLLIGLVGVYMG 270 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6999999999999775
No 34
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=1.4 Score=41.56 Aligned_cols=125 Identities=26% Similarity=0.261 Sum_probs=78.9
Q ss_pred hhhhHHHHhcchhhhhhhhHhhhhhhhh-------HHHHHHhh----c---cchhHHHHHHHHHHHhhCCCCCccchHHH
Q 019423 78 GAASVYTMADGSLGDMFGGFLYSAGQQA-------NEAVLGQL----S---ALSFTSLAVIFGAGLVTSLSPCTLSVLPL 143 (341)
Q Consensus 78 ~~~~~~~~~~g~~~~~~~~~l~~~g~~~-------~~~~~~~L----~---~~~~~~l~~aflaGll~slsPCvlp~lp~ 143 (341)
.-|.+...+-|.+.+++| +|.+++.. .|.+.+.+ + ..+.-....++..|++-.+-||- ++-+.
T Consensus 77 ~~~~~l~i~ag~~li~lG--L~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCG-lVYs~ 153 (232)
T COG2836 77 GLRGVLFIIAGALLIALG--LYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCG-LVYSA 153 (232)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcccchH-HHHHH
Confidence 446777778889999999 77744322 12222111 1 01112256788889999999997 33333
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019423 144 TLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 144 ~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lL 212 (341)
.+..+. +.|..++...-++|.+|..-+....|.+...+.+..++ .+....+.+++..|+..+
T Consensus 154 l~~A~~----tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~---~~~rl~~gl~~v~g~~~l 215 (232)
T COG2836 154 LAYALS----TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRK---RLNRLSGGLMVVVGLIGL 215 (232)
T ss_pred HHHHHH----cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHH
Confidence 332222 34556677778999999999999999988777666543 334455556666666554
No 35
>PRK11469 hypothetical protein; Provisional
Probab=88.65 E-value=19 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423 309 KFSSWINPMSGALLLGGGLYTFLDRL 334 (341)
Q Consensus 309 k~~~~i~~isGilLI~~Giy~ll~~~ 334 (341)
+.++|.+.+.|+++++.|++++++.+
T Consensus 161 ~~g~~a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 161 IIGKKAEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56778999999999999999887543
No 36
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.09 E-value=7 Score=38.38 Aligned_cols=85 Identities=25% Similarity=0.251 Sum_probs=58.2
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h
Q 019423 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ----------I 192 (341)
Q Consensus 123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~----------~ 192 (341)
..+..|+..++-||...+.-+.+++..+ -...+....+++.+|..+|-+.++.++-..-+...+ .
T Consensus 203 ~~~~~~l~~GLrPCpgAi~VLlfal~~g-----l~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~ 277 (303)
T COG2215 203 QQWLFGLTGGLRPCPGAIFVLLFALSLG-----LYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRI 277 (303)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHHhc-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4566777788889998887766666432 222456678889999999977777666544332211 1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 019423 193 GTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 193 ~~~l~~i~GillIl~GL~lL 212 (341)
...+.++.|.+++++|+.++
T Consensus 278 ~~~~~l~~gli~l~~g~~~l 297 (303)
T COG2215 278 SYIVSLLGGLIGLYFGLHLL 297 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23456788888999998877
No 37
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=84.64 E-value=12 Score=36.32 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=82.1
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhhh
Q 019423 123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-------QIGTG 195 (341)
Q Consensus 123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~-------~~~~~ 195 (341)
.++..|+--++-|=-+..+--+.--.. ++.++....+..|.+|=.++-.++.++++.....+. +....
T Consensus 3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~ 77 (280)
T TIGR00802 3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL 77 (280)
T ss_pred HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence 466777777776655443322221111 122344566788888887776666555554333332 22222
Q ss_pred H-HHHHHHHHHHHHHHHH----HHhhh-h-cccc---cc---------ccchhh-hh--cCCCChHHHHHHhHHhhhccC
Q 019423 196 L-PLAASGLAIVMGLNLL----EIIEL-Q-LPSF---FD---------NFDPRA-AA--ANFPSSVQAYLAGLTFALAAS 253 (341)
Q Consensus 196 l-~~i~GillIl~GL~lL----g~~~l-~-lp~~---~~---------~~~~~~-~~--~~~~~~~~afllGll~gL~~~ 253 (341)
+ ..+.+.+++++|+.-+ +.++. + .... .+ .+..|. ++ +..++++..|.+|++||+.+=
T Consensus 78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD 157 (280)
T TIGR00802 78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD 157 (280)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence 2 5677777777775533 22211 0 0000 00 000010 11 124677889999999999654
Q ss_pred CCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHhhHHH
Q 019423 254 PCSTPVLATLLGYVATSK-DPLIGGTLLLSYTTGYVA 289 (341)
Q Consensus 254 PC~gPil~~iL~~aa~sg-s~~~G~llll~fgLG~~l 289 (341)
--+---+.++-..+++++ +...-..+.+.|..|+++
T Consensus 158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L 194 (280)
T TIGR00802 158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMAL 194 (280)
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHH
Confidence 333222333333333333 344455557778888854
No 38
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=84.47 E-value=15 Score=32.43 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=68.8
Q ss_pred hhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHHhhccchhHHHHHHHHHHHhhCC-CCCccchHHHHHHHHhhcCCC
Q 019423 76 LEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYIGAFGSG 154 (341)
Q Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~~L~~~~~~~l~~aflaGll~sl-sPCvlp~lp~~l~~l~~~~~~ 154 (341)
.+.-+...+..|+....|++-.........++--+++-+ .-+..-.|.-|+...+ ||=.++.--.+.+..... +
T Consensus 55 ~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~--~ 129 (191)
T PF01810_consen 55 SPWLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAK---KQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISP--E 129 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhc---cccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCc--c
Confidence 445566778899999999982222222121111111111 1223345666666544 887755443333332221 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH
Q 019423 155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 155 ~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~-~~~l~~i~GillIl~GL~lL 212 (341)
.+.............+-.+.+..++.......+.+... .+++..+.|.+++.+|+.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~ 188 (191)
T PF01810_consen 130 YSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLL 188 (191)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233334445555556666666655555544332 23678899999999998875
No 39
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=84.39 E-value=40 Score=32.41 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=98.4
Q ss_pred CCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHH
Q 019423 133 LSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAI 205 (341)
Q Consensus 133 lsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~-------~~~~l~~i~GillI 205 (341)
..|-+.|++-.+... +.+ .+-|.+-..+.+.|..|-.......|+++..+-..... .....+++.|+.++
T Consensus 97 MlPsaaPmi~~ya~i-~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~ 173 (283)
T COG5486 97 MLPSAAPMILLYAEI-GRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLL 173 (283)
T ss_pred hCccccHHHHHHHHH-HHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHH
Confidence 468887777554422 111 11122334568899999999999999887654443321 11234677888889
Q ss_pred HHHHHHHHHhh------hhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHH
Q 019423 206 VMGLNLLEIIE------LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 279 (341)
Q Consensus 206 l~GL~lLg~~~------l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~ll 279 (341)
+-|++.+.-+| .+-|-.+ ..+.. ..+.+..++|-+|+-=|+.-.-|+=.+ .. +
T Consensus 174 vAGlYQft~LK~~CL~qCrtPl~f--l~shw--~fr~~p~ga~~LGlrhGlyClGCCWAL-m~----------------l 232 (283)
T COG5486 174 VAGLYQFTTLKHACLSQCRTPLSF--LFSHW--RFRAKPVGAFRLGLRHGLYCLGCCWAL-ML----------------L 232 (283)
T ss_pred HhhhhhhccHHHHHHHHccchHHH--HHHhc--CcccCcchhhhhccccccchHHHHHHH-HH----------------H
Confidence 99999874322 1222111 00011 123567889999999998877887222 11 1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423 280 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF 330 (341)
Q Consensus 280 ll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~l 330 (341)
|++=|.+...-+.+++.+.- +.|...+++.+.+++|.++...|.+.+
T Consensus 233 lfv~Gvmnl~Wma~ial~vl----iEK~~~~Gr~~srv~gall~a~gaw~l 279 (283)
T COG5486 233 LFVVGVMNLLWMALIALLVL----IEKQTSPGRRLSRVAGALLAAAGAWLL 279 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhccCcccchHHHHHHHHHHHHHhhc
Confidence 22223333333333333221 122345678888899999999999854
No 40
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=81.65 E-value=73 Score=33.45 Aligned_cols=101 Identities=23% Similarity=0.259 Sum_probs=56.2
Q ss_pred hHHHHhcchhhhhhhhHhhhhhhhh-HH------HHHHhhcc-chhHHHHHHHHHHHhhCC-CCCccchHHHHHHHHhhc
Q 019423 81 SVYTMADGSLGDMFGGFLYSAGQQA-NE------AVLGQLSA-LSFTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYIGAF 151 (341)
Q Consensus 81 ~~~~~~~g~~~~~~~~~l~~~g~~~-~~------~~~~~L~~-~~~~~l~~aflaGll~sl-sPCvlp~lp~~l~~l~~~ 151 (341)
.++....|.+.|.++..-.=...+. .- .+...... ..+.-+...|+.|....+ .|.--.++|-.+.
T Consensus 59 ~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~----- 133 (524)
T PF05977_consen 59 LLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP----- 133 (524)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 3678888888887764221111111 10 01111112 234566677888887766 4665555554431
Q ss_pred CCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423 152 GSGKSR-AQIIGDSIAFSLGLATTLALLGVGASFAGKA 188 (341)
Q Consensus 152 ~~~~sr-~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~ 188 (341)
+++- +..-.+...+++.+++.-.+-|++.+.+|..
T Consensus 134 --~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~ 169 (524)
T PF05977_consen 134 --KEDLPAANALNSISFNIARIIGPALGGILVAFFGAA 169 (524)
T ss_pred --HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1111 1223567788888888888888887766654
No 41
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=80.33 E-value=28 Score=34.27 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCCh
Q 019423 196 LPLAASGLAIVMGLNLLEI-IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDP 273 (341)
Q Consensus 196 l~~i~GillIl~GL~lLg~-~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~ 273 (341)
+..+.|+-++++|+.+++. ++ +. ..++.+.... .-.+++..+++.|.......= -+.....-....+.+ --+.
T Consensus 5 ~~llgGlgl~l~Gl~~~~~~l~-~~--~g~~~~~~l~-~~t~~~~~a~l~G~~~Tal~Q-SSsa~t~i~i~lv~~G~l~~ 79 (307)
T TIGR00704 5 LHLLSAVAFLLWGMHIVRTGVM-RV--FGARLRTVLS-RSTEKKPLAFLAGIGVTAIVQ-SSNATTVLVISFVAAGVLSL 79 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH--hhhHHHHHHH-HHcCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCH
Confidence 4566777788899998843 22 11 1111111111 123556778888888775332 222222222222322 1255
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423 274 LIGGTLLLSYTTGYVAPLLLAASFA----------GALQSLLSFRKFSSWINPMSGALLLGGGLYTFL 331 (341)
Q Consensus 274 ~~G~llll~fgLG~~lPLlll~~~~----------~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll 331 (341)
..+..+++.=++|+++.-.+++.-. +.+..+.+.+|++++-+.+.|+-++.+|+.++-
T Consensus 80 ~~al~iilGANiGTt~t~~l~s~~~~~~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m~ 147 (307)
T TIGR00704 80 APAIVIILGANVGTTLTARILAFDLSILSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELIS 147 (307)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777765555443311 111112223456677777888888888887653
No 42
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=80.19 E-value=36 Score=31.27 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=41.8
Q ss_pred cCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423 252 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL-LSFRKFSSWINPMSGALLLGGGLYTF 330 (341)
Q Consensus 252 ~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~-~~~~k~~~~i~~isGilLI~~Giy~l 330 (341)
-..|.-.+|.++.+ +.++.+-...+..|.+..++-..+.-. ..+.+.+ +.++|+++ .+..+++++.|+|.+
T Consensus 108 nGgDNigIYiP~Fa----~~s~~~l~v~l~vF~ilv~v~c~la~~-l~~~p~i~~~leryg~---~l~p~v~I~LGi~Il 179 (191)
T PF03596_consen 108 NGGDNIGIYIPLFA----SLSLAELIVILIVFLILVGVWCFLAYK-LARIPIIAEFLERYGR---WLVPIVYIGLGIYIL 179 (191)
T ss_pred cCCCeEEEeehhhh----cCCHHHHHHHHHHHHHHHHHHHHHHHH-HhCChHHHHHHHHhcc---cHHHHHHHHhCceee
Confidence 36677656665543 345667777777777776544433322 2222222 12344444 455578899999977
Q ss_pred hh
Q 019423 331 LD 332 (341)
Q Consensus 331 l~ 332 (341)
.+
T Consensus 180 ~e 181 (191)
T PF03596_consen 180 IE 181 (191)
T ss_pred Ee
Confidence 54
No 43
>COG1279 Lysine efflux permease [General function prediction only]
Probab=75.76 E-value=69 Score=29.83 Aligned_cols=44 Identities=20% Similarity=0.039 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 019423 289 APLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 332 (341)
Q Consensus 289 lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~ 332 (341)
+-++.+++..+++++....+|..++++.+.|++|...++++..+
T Consensus 158 ~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 158 LWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred HHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555666666777777778899999999999999999987653
No 44
>COG1971 Predicted membrane protein [Function unknown]
Probab=74.27 E-value=73 Score=29.40 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423 308 RKFSSWINPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 308 ~k~~~~i~~isGilLI~~Giy~ll~~ 333 (341)
+..++|.+.+.|++++..|++.++..
T Consensus 162 ~~~g~~ae~lgGiiLI~~G~~iL~~~ 187 (190)
T COG1971 162 KFLGKYAEILGGIILIGIGVKILLEH 187 (190)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999987653
No 45
>COG4827 Predicted transporter [General function prediction only]
Probab=73.37 E-value=83 Score=29.64 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019423 317 MSGALLLGGGLYTFLDR 333 (341)
Q Consensus 317 isGilLI~~Giy~ll~~ 333 (341)
..|-.+...|+|+++..
T Consensus 172 ~Lg~~mll~Glyfllaa 188 (239)
T COG4827 172 TLGSAMLLLGLYFLLAA 188 (239)
T ss_pred hHhhHHHHHHHHHHHHH
Confidence 45667778888877654
No 46
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=68.15 E-value=92 Score=28.06 Aligned_cols=141 Identities=18% Similarity=0.081 Sum_probs=70.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcC
Q 019423 155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234 (341)
Q Consensus 155 ~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~ 234 (341)
+.|++....+....+..-..|...|... ++ ..++.+++|++++..++.|+..- ..+ .+++. .+
T Consensus 30 ~~r~~~~~~G~~~A~vlr~if~~~G~~l------l~--~~~~~iaGGllLl~ia~~ml~~~------~~~-~~~~~--~~ 92 (176)
T TIGR03717 30 HQRKKAIFWGTAGAIVLRILLTAVAVYL------LA--IPFLKLIGGLLLLWIGWKLLLEE------EEE-QGGDV--KG 92 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--hHHHHHHHHHHHHHHHHHHHhcc------ccc-ccccc--cc
Confidence 4455555555555555555555554322 22 25678999999999999987211 100 01100 11
Q ss_pred CCChHHHH----HHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 019423 235 FPSSVQAY----LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKF 310 (341)
Q Consensus 235 ~~~~~~af----llGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~ 310 (341)
.++.+.+. ..=+.|++ =++++.++.+.+ =..+..+|+..++|++..+. ..+ .++-+.
T Consensus 93 ~~~~~~~v~~I~~~D~~fS~----------DsV~a~~~~~~~----~~~li~~g~~i~i~~m~~~s--~~~---~~~~~~ 153 (176)
T TIGR03717 93 STTLWAAIKTIVIADAVMSL----------DNVLAVAGAAHG----HLGLLIFGLLLSIPIIVWGS--TLI---LKLMDR 153 (176)
T ss_pred cCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHH--HHH---HHHHHH
Confidence 12222211 11112221 022222222221 23455667777788877543 222 223345
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 019423 311 SSWINPMSGALLLGGGLYTFL 331 (341)
Q Consensus 311 ~~~i~~isGilLI~~Giy~ll 331 (341)
-++++.....++...|+=+++
T Consensus 154 ~p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 154 FPWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888877876554
No 47
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=67.09 E-value=72 Score=30.37 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 019423 119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL-GLATTLALLGVGASFAGKAY 189 (341)
Q Consensus 119 ~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~l-G~~lty~lLG~~~~~lG~~l 189 (341)
......+..|+..++.||.....-....... ..........+.+.+ |..++...+..++.......
T Consensus 177 ~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~-----~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~~~~~~~ 243 (282)
T PF03824_consen 177 ISWILLLGLGFAAGMVPCPGALGVLLFALYL-----GAFWAGRAAVLAMSLGGMAITVALFAGLAVLARLLA 243 (282)
T ss_pred chHHHHHHHHHHhhccccHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778889999999998665443333322 111123455667777 77777777776665555544
No 48
>COG1279 Lysine efflux permease [General function prediction only]
Probab=59.80 E-value=1.5e+02 Score=27.62 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=68.0
Q ss_pred chHHhhhhhhh--HHHHhcchh-hhhhhhHhhhhhhhhHHHHHHhhcc-ch-hHHHHHHHHHHHhhCCCCCccchHHHHH
Q 019423 71 TMENVLEGAAS--VYTMADGSL-GDMFGGFLYSAGQQANEAVLGQLSA-LS-FTSLAVIFGAGLVTSLSPCTLSVLPLTL 145 (341)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~g~~-~~~~~~~l~~~g~~~~~~~~~~L~~-~~-~~~l~~aflaGll~slsPCvlp~lp~~l 145 (341)
-.+...+++.. .+.+.+|.. ..|.|-.........++-.+.+-+. .+ +-.+ .+... ++-+||.++-=--.++
T Consensus 57 G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~~~~~~~~~~~~~~~~~~l--~~ala-vT~LNPhvyLDtvvli 133 (202)
T COG1279 57 GVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRGPSQLQVAEFTKLKLKKVL--LFALA-VTLLNPHVYLDTVVLI 133 (202)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccccccccccHHHHH--HHHHH-HHHhCchhhhhhHhhh
Confidence 34445555554 456677777 6677622222221111211111111 11 1122 22222 4667999976544455
Q ss_pred HHHhhcCCCcchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHH
Q 019423 146 GYIGAFGSGKSRAQIIGDSIAFSLGLA----TTLALLGVGASFAGKAYGQ--IGTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 146 ~~l~~~~~~~sr~~~~~~~l~f~lG~~----lty~lLG~~~~~lG~~l~~--~~~~l~~i~GillIl~GL~lL 212 (341)
+.++.+-+..+| ..|.+|-+ +-|..+|..+..+.+.+.. ..+++..+.+++|..+++.+.
T Consensus 134 Gs~~~~~~~~~k-------~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~ 199 (202)
T COG1279 134 GSLAAQLSDEAK-------WFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLA 199 (202)
T ss_pred hhhhhhcCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 555433222222 23444443 5677888777666666543 345677888888888887764
No 49
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=57.31 E-value=2.7e+02 Score=29.74 Aligned_cols=125 Identities=18% Similarity=0.067 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCCh
Q 019423 195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDP 273 (341)
Q Consensus 195 ~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~ 273 (341)
.-..+.|+=++++|+.+++-.--++-.. +.+..-.. .-.+.+..++++|.+++...-+-..-+ .-++..+.. --+.
T Consensus 133 lG~~~~GiGl~f~sl~l~~~a~~pl~~s-~~~~~~i~-~l~~~~~~~l~~g~~lt~l~~SS~A~i-~i~~~l~~~glis~ 209 (533)
T COG1283 133 LGRVLFGIGLIFLSLELLGQATEPLRQS-PAFSDFIA-KLSDDPIVALLIGALLTALIQSSLAAI-GILLSLTSQGLISL 209 (533)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhc-hhHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccch
Confidence 3466777778888998886532221100 00000011 112345666778887776544333211 111222221 2366
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 019423 274 LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGG 325 (341)
Q Consensus 274 ~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~ 325 (341)
-.+..+.+.=++|+++|..+++..++...+ ..-..+++-+..|.++...
T Consensus 210 ~~~~alvLGaNlGt~i~a~laa~~~~~~ar---r~a~~~ll~~~iG~li~lp 258 (533)
T COG1283 210 EAALALVLGANLGTTITAVLAALGASAAAR---RVALGNLLFNLIGVLIFLP 258 (533)
T ss_pred hHHHHHHHHHhhhchhHHHHHhcccchhHH---HHHHHHHHHHHHhHHHHHH
Confidence 778888888899999998887765544321 1234566666666554443
No 50
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=48.86 E-value=1.9e+02 Score=30.78 Aligned_cols=134 Identities=15% Similarity=0.061 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH--hhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cC
Q 019423 195 GLPLAASGLAIVMGLNLLEI--IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SK 271 (341)
Q Consensus 195 ~l~~i~GillIl~GL~lLg~--~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sg 271 (341)
++..++++.++++|+.+++- .+. .. .+.++... +..+++.-+++.|+......=.-++-.+..+ ..+++ --
T Consensus 7 ~l~l~g~v~l~L~g~~~m~~Gv~~~-~G---~~lr~~L~-~~t~np~~gvl~Gi~~T~llQSStatt~lt~-gfV~aGl~ 80 (533)
T COG1283 7 LLNLLGAVALLLFGIKMVGDGVQRA-AG---DRLRKILA-RFTSNPILGVLAGIVATALLQSSTATTVLTI-GFVAAGLL 80 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hH---HHHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcchHHHHHH-HHHhcccc
Confidence 34566777788999998832 211 00 01111111 2345667788888877654333332222222 22221 12
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423 272 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL-----------QSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334 (341)
Q Consensus 272 s~~~G~llll~fgLG~~lPLlll~~~~~~l-----------~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~ 334 (341)
+.-.+...++.=++|+++--.+++.-.++. -.+.+..+++..-+.+.|+-++.+++.++-+-.
T Consensus 81 sl~~Ai~vilGANIGTt~Ta~iva~~l~~~~~~ll~~G~~~~~f~~~~~~~~lG~~~~GiGl~f~sl~l~~~a~ 154 (533)
T COG1283 81 SLKQAIGVILGANIGTTVTAWIVALDLSWLSPPLLAIGAILFFFGKSSKLRQLGRVLFGIGLIFLSLELLGQAT 154 (533)
T ss_pred chhhhhhheeccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchHHHHhcchhHHHHHHHHHHHHHHHHhh
Confidence 233333444444444443333332221111 011223445555566677777777776554333
No 51
>PRK10958 leucine export protein LeuE; Provisional
Probab=46.68 E-value=2.3e+02 Score=25.82 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=61.1
Q ss_pred hchHHhhhhh---hhHHHHhcchhhhhhhhHhhhhhhhh-HHHHHHhhccchhHHHHHHHHHHHhhCC-CCCccchHHHH
Q 019423 70 LTMENVLEGA---ASVYTMADGSLGDMFGGFLYSAGQQA-NEAVLGQLSALSFTSLAVIFGAGLVTSL-SPCTLSVLPLT 144 (341)
Q Consensus 70 ~~~~~~~~~~---~~~~~~~~g~~~~~~~~~l~~~g~~~-~~~~~~~L~~~~~~~l~~aflaGll~sl-sPCvlp~lp~~ 144 (341)
.-++..++.+ ....+.+|+.-..|++-......... ++..++ +..+ ....|.-|++..+ ||=.+-....+
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~~~~~~~~~~--~~~~---~~~~f~~g~~~~l~NPKa~lf~~a~ 137 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAALRRWRRRAAS--AAPP---YGAPFRRALILSLTNPKAILFFVSF 137 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--cCcc---hhHHHHHHHHHHhhChHHHHHHHHH
Confidence 3445555444 44566688888899983333221000 000000 1111 1135777777744 88875544333
Q ss_pred HHHHhhcCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHH
Q 019423 145 LGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 145 l~~l~~~~~~~-sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~---~~~~l~~i~GillIl~GL~lL 212 (341)
..-.... +.. ...+....+..+..--...|.........+.+.+.. ..+++..+.|.+++.+|+.++
T Consensus 138 ~~~fi~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~l~~~~i~l~ 208 (212)
T PRK10958 138 FVQFVDP-NYAHPALSFLILATILQLVSFCYLSFLIFSGARLAAYFRRRKKLAAGGNSLVGLLFVGFAAKLA 208 (212)
T ss_pred HhcccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222111 111 111212222222221222232333222333344432 235677888888888888764
No 52
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=45.23 E-value=2.4e+02 Score=25.69 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=61.9
Q ss_pred HHhhhhhhh---HHHHhcchhhhhhhhHhhhhhhhhHHHHHHhhccchhHHHHHHHHHHHhhCC-CCCccchHHHHHHHH
Q 019423 73 ENVLEGAAS---VYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYI 148 (341)
Q Consensus 73 ~~~~~~~~~---~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~~L~~~~~~~l~~aflaGll~sl-sPCvlp~lp~~l~~l 148 (341)
+..+..... ....+|+.-..|++ ++.-+...+..++.-+........-.|.-|++..+ ||=....--.++..+
T Consensus 62 ~all~~~~~~f~~lk~~GaaYL~ylg---~~~~ra~~~~~~~~~~~~~~~~~~~~f~~G~~~~l~NPK~~lf~la~~pqf 138 (208)
T COG1280 62 AALLATSPALFTVLKLAGAAYLLYLG---WKALRAGGAALAEEAAGAPSSSRRKAFRRGLLVNLLNPKAILFFLAFLPQF 138 (208)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHhcccccccccccccccchhHHHHHHHHHHHhhCcHHHHHHHHHHhhh
Confidence 334444444 45557888888888 44322221110111000001110246888888866 888744332222222
Q ss_pred hhcCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHH
Q 019423 149 GAFGSGKS-RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ--IGTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 149 ~~~~~~~s-r~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~--~~~~l~~i~GillIl~GL~lL 212 (341)
... +... ..+.......+..=-...+...........+.+.. ..+++..+.|.+++..|+.++
T Consensus 139 v~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~ 204 (208)
T COG1280 139 VDP-GAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLA 204 (208)
T ss_pred cCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111 11222222222222222222233232333444443 455678888999888888765
No 53
>PRK10621 hypothetical protein; Provisional
Probab=45.01 E-value=2.7e+02 Score=26.17 Aligned_cols=29 Identities=17% Similarity=-0.060 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhccc
Q 019423 309 KFSSWINPMSGALLLGGGLYTFLDRLFPT 337 (341)
Q Consensus 309 k~~~~i~~isGilLI~~Giy~ll~~~~p~ 337 (341)
...+++|++...+++..|++++++.++++
T Consensus 230 ~~~~~lr~~~~~ll~~~~i~~~~~~~~~~ 258 (266)
T PRK10621 230 KGQKLIRPMIVIVSAVMSAKLLYDSHGQE 258 (266)
T ss_pred cCchHhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35678999999999999999988877743
No 54
>COG1971 Predicted membrane protein [Function unknown]
Probab=42.15 E-value=2.8e+02 Score=25.59 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhhhhchhhhhchHHhhhhhhhHHHH-hcchhhhhhhhHhhhhhhhhHHHHHH-hhc-cchhHHHHHHHH
Q 019423 50 NTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTM-ADGSLGDMFGGFLYSAGQQANEAVLG-QLS-ALSFTSLAVIFG 126 (341)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~l~~~g~~~~~~~~~-~L~-~~~~~~l~~afl 126 (341)
+.+..+...+..-++..---.-+|.|++..-..++- +++.+..+.| ++-.-+...+--.+ ..+ +.....+-..++
T Consensus 35 ~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG--~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T COG1971 35 EALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILG--LKMIIEGFKNEEDEFVDPAEKHDLNFKELIL 112 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhchhhcchhcccccchhhHHHHHH
Confidence 344455555555555555556678888877777777 8888888888 43332221110011 111 223233444667
Q ss_pred HHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHH
Q 019423 127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLG-LATTLALLGVGAS-FAGKAYGQIGTGLPLAASGLA 204 (341)
Q Consensus 127 aGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG-~~lty~lLG~~~~-~lG~~l~~~~~~l~~i~Gill 204 (341)
.|+.+|+.-= ++ ..-+++.. -+ .+ --+...| ...+...+|...+ .+|+++ .++...+.|+++
T Consensus 113 laiatSidal--~v-G~~~a~lg-----v~---i~--~~av~iG~~T~il~~~G~~IG~~~g~~~---g~~ae~lgGiiL 176 (190)
T COG1971 113 LAIATSIDAL--AV-GVGLAFLG-----VN---IL--LAAVAIGLITLILSALGAIIGRKLGKFL---GKYAEILGGIIL 176 (190)
T ss_pred HHHHHHHHHH--HH-hhhHHHhc-----ch---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Confidence 7777776221 11 11122211 11 11 1233445 3356666776665 233333 345678899999
Q ss_pred HHHHHHHH
Q 019423 205 IVMGLNLL 212 (341)
Q Consensus 205 Il~GL~lL 212 (341)
+++|...+
T Consensus 177 I~~G~~iL 184 (190)
T COG1971 177 IGIGVKIL 184 (190)
T ss_pred HHHHHHHH
Confidence 99999876
No 55
>COG0730 Predicted permeases [General function prediction only]
Probab=40.26 E-value=3.1e+02 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423 309 KFSSWINPMSGALLLGGGLYTFLDRL 334 (341)
Q Consensus 309 k~~~~i~~isGilLI~~Giy~ll~~~ 334 (341)
...+.+|++.+.+++..+++++++..
T Consensus 230 ~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 230 LSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34889999999999999999887664
No 56
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=38.64 E-value=3.5e+02 Score=25.61 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019423 196 LPLAASGLAIVMGLNLLEIIEL 217 (341)
Q Consensus 196 l~~i~GillIl~GL~lLg~~~l 217 (341)
+.-+.|++++..|+++++.-++
T Consensus 186 ~savGGili~~iGlnll~ik~i 207 (226)
T PF04474_consen 186 ISAVGGILILAIGLNLLGIKKI 207 (226)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 4678888899999999976444
No 57
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=38.13 E-value=3e+02 Score=24.67 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=43.1
Q ss_pred HHHHHHhhCC-CCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019423 124 IFGAGLVTSL-SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASG 202 (341)
Q Consensus 124 aflaGll~sl-sPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~Gi 202 (341)
.|.-|++..+ ||=.+......++-....+ ++........+..+.......+.........+.+.+.+.++++..+.|.
T Consensus 106 ~f~~G~~~~l~NPKa~lf~~a~~~~f~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 184 (195)
T PRK10323 106 SFWASFALQFVNVKIILYGITALSTFVLPQ-TQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRLFRQYGRQLNIVLAL 184 (195)
T ss_pred hHHHHHHHHhHCHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677887744 8887655444433332211 1111111222223333222222223222233344454556678888898
Q ss_pred HHHHHHHHH
Q 019423 203 LAIVMGLNL 211 (341)
Q Consensus 203 llIl~GL~l 211 (341)
+++.+|+.+
T Consensus 185 ~l~~~a~~l 193 (195)
T PRK10323 185 LLVYCAVRI 193 (195)
T ss_pred HHHHHHHHH
Confidence 888888765
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.28 E-value=2.1e+02 Score=25.30 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019423 197 PLAASGLAIVMGLNLL 212 (341)
Q Consensus 197 ~~i~GillIl~GL~lL 212 (341)
.++.|++++.+|+..+
T Consensus 45 ~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 45 LLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444566666666554
No 59
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=35.15 E-value=2.9e+02 Score=23.74 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=38.2
Q ss_pred CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCChhHHHHHHHHHHhhHHHHHHHHH
Q 019423 236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAA 295 (341)
Q Consensus 236 ~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~~~G~llll~fgLG~~lPLlll~ 295 (341)
++++.+++.|..++.. ..-+......+...+.+ .-+...+..+++.=++|++++-.+++
T Consensus 30 ~~~~~~~l~G~~~T~l-~QSSsa~~~i~v~l~~~g~l~~~~al~~ilGaNiGtt~~~~l~a 89 (142)
T PF02690_consen 30 SNPLLAFLLGALLTAL-VQSSSAVTLIVVSLVAAGVLSLEQALAIILGANIGTTITALLAA 89 (142)
T ss_pred CCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcccCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4568889999999875 33333343333333332 23566777777778889988777766
No 60
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=34.77 E-value=2.1e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019423 167 FSLGLATTLALLGVGASFAG 186 (341)
Q Consensus 167 f~lG~~lty~lLG~~~~~lG 186 (341)
|+.|+.++|..+++..+.+-
T Consensus 25 ~~~GfslS~L~~slgv~Q~~ 44 (97)
T PF08611_consen 25 YAMGFSLSYLTASLGVGQFF 44 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998887554
No 61
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=34.72 E-value=90 Score=29.90 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHH
Q 019423 243 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297 (341)
Q Consensus 243 llGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~ 297 (341)
-+|....+..+-|. +++..+...+...++......-+.-|+|+.+-+++++..
T Consensus 121 aLGifLPLIttNCa--VLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~a~i 173 (244)
T PRK01061 121 SLGIFLPLIAVNCA--ILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLFATI 173 (244)
T ss_pred HHhcchhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888889996 777776666667777888888777888887777766543
No 62
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=33.78 E-value=3.5e+02 Score=25.52 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423 272 DPLIGGTLLLSYTTGYVAPLLLAASFAGAL--QSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 333 (341)
Q Consensus 272 s~~~G~llll~fgLG~~lPLlll~~~~~~l--~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~ 333 (341)
+.-.-+.....|+++. ++++...+.. +....+.+++.+++.+.+++++..|+|+.-++
T Consensus 30 s~k~~~~i~~~Y~~l~----~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W 89 (224)
T PF09930_consen 30 SRKEIALIALGYGLLF----LLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKW 89 (224)
T ss_pred cHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677665 3444444444 23456778999999999999999999987543
No 63
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=28.79 E-value=1.2e+02 Score=28.22 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019423 243 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300 (341)
Q Consensus 243 llGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~ 300 (341)
.+|....+..+-|. +++..+..+....++......-+.-|+|+.+-+++++..-.+
T Consensus 109 ~LGiflpLI~tNCa--VLG~al~~~~~~~~~~~s~~~glg~GlGftlal~l~a~iRE~ 164 (199)
T PRK12456 109 TLGAFLPLLTIHCA--IFGATIFMVQREYTFTESFVYGTGCGLGWMLAIISMAGLREK 164 (199)
T ss_pred HHhhhHhHHHHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888889996 777766655555688888888888888887777776644333
No 64
>PRK10995 inner membrane protein; Provisional
Probab=27.91 E-value=4.1e+02 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.7
Q ss_pred hchHHhhhhhhhHHHHhcchhhhhhh
Q 019423 70 LTMENVLEGAASVYTMADGSLGDMFG 95 (341)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (341)
..+=+||.-+..-|+.+||.+.-+++
T Consensus 63 ~~il~~fgIs~~a~rIaGGilL~~ig 88 (221)
T PRK10995 63 QLVMSTFGISIPGLRIAGGLIVAFIG 88 (221)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45667999999999999999998888
No 65
>COG2119 Predicted membrane protein [Function unknown]
Probab=27.42 E-value=5e+02 Score=24.01 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHH
Q 019423 170 GLATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLL 212 (341)
Q Consensus 170 G~~lty~lLG~~~~~lG~~l~~~--~~~l~~i~GillIl~GL~lL 212 (341)
|....-...=++...+|++.... .++..++.+...+++|+.++
T Consensus 39 g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l 83 (190)
T COG2119 39 GIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWML 83 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHh
Confidence 44444444555556677766543 35678899999999999987
No 66
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=26.46 E-value=4.7e+02 Score=23.90 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred HHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHH
Q 019423 242 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA 298 (341)
Q Consensus 242 fllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~ 298 (341)
=.+|+...+.-+-|. ++...+.-+-...+..+...+-+.=++|+++.+++.+..-
T Consensus 101 r~LGIfLPLITTNCa--VLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iR 155 (193)
T COG4657 101 RLLGIFLPLITTNCA--VLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIR 155 (193)
T ss_pred HHHHHhhhhHhhchH--HHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 358999999999996 8887777777778888888888888888888877766433
No 67
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=25.02 E-value=1.2e+02 Score=23.81 Aligned_cols=27 Identities=41% Similarity=0.787 Sum_probs=19.4
Q ss_pred hHHHHHHhHHhhhccCCCchHHHHHHHH
Q 019423 238 SVQAYLAGLTFALAASPCSTPVLATLLG 265 (341)
Q Consensus 238 ~~~afllGll~gL~~~PC~gPil~~iL~ 265 (341)
.+..|+-|.+.-+ .|||--|++..++.
T Consensus 14 ~i~gy~Wg~lA~l-TCPCHLpil~~vLa 40 (75)
T PF05052_consen 14 PITGYLWGLLALL-TCPCHLPILAPVLA 40 (75)
T ss_pred cchhhhhHHHHHh-hCcchHHHHHHHHc
Confidence 3556777766554 79999999887654
No 68
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.30 E-value=3.9e+02 Score=21.21 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHH--H--hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 019423 288 VAPLLLAASFAGALQS--L--LSFRKFSSWINPMSGALLLGGGLYTFLDRLF 335 (341)
Q Consensus 288 ~lPLlll~~~~~~l~~--~--~~~~k~~~~i~~isGilLI~~Giy~ll~~~~ 335 (341)
++|-++.++.....+. + ...+...-|++-+.|.++.+.|++++-..++
T Consensus 11 vIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~ 62 (77)
T PF11118_consen 11 VIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFIL 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4566665554444331 1 1223455699999999999999997765443
No 69
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.26 E-value=4.8e+02 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=9.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 019423 282 SYTTGYVAPLLLAASFAGALQ 302 (341)
Q Consensus 282 ~fgLG~~lPLlll~~~~~~l~ 302 (341)
.-|.-+++|.++-..+..++.
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD 67 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLD 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444444453
Done!