Query 019423
Match_columns 341
No_of_seqs 175 out of 1275
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_L VIIIA, cytochrome C oxi 10.3 2.4E+02 0.0081 19.1 3.1 19 276-294 22-40 (47)
2 2y69_L Cytochrome C oxidase su 8.1 3E+02 0.01 19.7 3.1 19 276-294 38-56 (63)
3 1pw4_A Glycerol-3-phosphate tr 7.9 1.1E+03 0.037 21.0 20.1 18 272-289 286-303 (451)
4 3m1f_V VOPL, putative uncharac 6.6 35 0.0012 21.2 -2.1 17 15-31 1-17 (31)
5 2l9u_A Receptor tyrosine-prote 4.5 7.9E+02 0.027 15.7 3.2 20 161-180 6-25 (40)
6 2i68_A Protein EMRE; transmemb 3.2 1.3E+03 0.045 18.4 4.5 17 314-330 85-101 (137)
7 4b4a_A TATC, SEC-independent p 2.9 6.8E+02 0.023 22.4 2.5 18 279-296 156-173 (249)
8 2jp3_A FXYD domain-containing 2.8 1E+03 0.034 17.3 2.8 17 317-333 23-39 (67)
9 2jo1_A Phospholemman; FXYD1, N 2.7 1E+03 0.035 17.5 2.8 17 317-333 22-38 (72)
10 1jb0_J Photosystem 1 reaction 2.6 8.1E+02 0.028 16.1 1.9 16 323-338 21-36 (41)
No 1
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=10.30 E-value=2.4e+02 Score=19.12 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 019423 276 GGTLLLSYTTGYVAPLLLA 294 (341)
Q Consensus 276 G~llll~fgLG~~lPLlll 294 (341)
.+.+...++.|+++|+++.
T Consensus 22 ~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 22 LAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3445567899999998865
No 2
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.10 E-value=3e+02 Score=19.75 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 019423 276 GGTLLLSYTTGYVAPLLLA 294 (341)
Q Consensus 276 G~llll~fgLG~~lPLlll 294 (341)
.+.+...++.|+++|+++.
T Consensus 38 ~~~~~~f~g~GF~~PF~i~ 56 (63)
T 2y69_L 38 LAMMTLFFGSGFAAPFFIV 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 3444457899999998865
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.93 E-value=1.1e+03 Score=20.95 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=9.8
Q ss_pred ChhHHHHHHHHHHhhHHH
Q 019423 272 DPLIGGTLLLSYTTGYVA 289 (341)
Q Consensus 272 s~~~G~llll~fgLG~~l 289 (341)
++.....+...++++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 455555556666665533
No 4
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=6.62 E-value=35 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.1
Q ss_pred eccCCCcccccccCCCC
Q 019423 15 SCHQRSTAYGKQMAPGV 31 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (341)
+||.++.+--.+++.|+
T Consensus 1 scnedrSKLMEqIRqGV 17 (31)
T 3m1f_V 1 SCNEDHSKLMEQIRQGV 17 (31)
T ss_dssp CCSTTHHHHHHHHHHCC
T ss_pred CcchhHHHHHHHHHhhh
Confidence 57777777766777665
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.53 E-value=7.9e+02 Score=15.74 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019423 161 IGDSIAFSLGLATTLALLGV 180 (341)
Q Consensus 161 ~~~~l~f~lG~~lty~lLG~ 180 (341)
+..++....|.++.|..+|.
T Consensus 6 l~malt~i~gl~vif~~lg~ 25 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGG 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 34456677788888888874
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=3.22 E-value=1.3e+03 Score=18.36 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019423 314 INPMSGALLLGGGLYTF 330 (341)
Q Consensus 314 i~~isGilLI~~Giy~l 330 (341)
..++.|+.+++.|++.+
T Consensus 85 ~~~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 85 LPAIIGMMLICAGVLII 101 (137)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34578899999999865
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=2.89 E-value=6.8e+02 Score=22.36 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=11.3
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 019423 279 LLLSYTTGYVAPLLLAAS 296 (341)
Q Consensus 279 lll~fgLG~~lPLlll~~ 296 (341)
++++||+-+=+|+++...
T Consensus 156 l~l~fGl~FelPvi~~~L 173 (249)
T 4b4a_A 156 LVVAFGIAFEMPIVLYVL 173 (249)
T ss_dssp HHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566666688877543
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=2.77 E-value=1e+03 Score=17.33 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019423 317 MSGALLLGGGLYTFLDR 333 (341)
Q Consensus 317 isGilLI~~Giy~ll~~ 333 (341)
+.+.++.++|+..++++
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45567778888877754
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=2.73 E-value=1e+03 Score=17.49 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019423 317 MSGALLLGGGLYTFLDR 333 (341)
Q Consensus 317 isGilLI~~Giy~ll~~ 333 (341)
+.+.++.++|+.+++++
T Consensus 22 ifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 22 VIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45667778888877765
No 10
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=2.63 E-value=8.1e+02 Score=16.13 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhhcccc
Q 019423 323 LGGGLYTFLDRLFPTT 338 (341)
Q Consensus 323 I~~Giy~ll~~~~p~~ 338 (341)
+..|+..-..|++|+-
T Consensus 21 ~tAg~lIEiNRffPD~ 36 (41)
T 1jb0_J 21 ITAGILIEFNRFYPDL 36 (41)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCccc
Confidence 4567777788999984
Done!