Query 019423
Match_columns 341
No_of_seqs 175 out of 1275
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 15:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019423.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019423hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 16.6 55 0.004 20.7 3.0 17 278-294 23-39 (46)
2 d2uuia1 f.56.1.1 (A:2-147) Leu 7.4 4.3E+02 0.031 19.6 8.9 21 317-337 112-132 (146)
3 d1tpna_ g.27.1.1 (A:) Tissue-t 4.6 1.3E+02 0.0095 19.2 1.1 21 6-28 28-49 (50)
4 d1dfna_ g.9.1.1 (A:) Defensin 4.3 1.3E+02 0.0095 16.8 0.8 16 11-26 3-19 (30)
5 d1oede_ f.36.1.1 (E:) Acetylch 4.2 7.5E+02 0.055 19.0 6.4 18 133-150 9-26 (260)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.7 8.1E+02 0.059 18.5 12.5 12 198-209 383-394 (417)
7 d1xu1r_ g.24.1.2 (R:) Tumor ne 3.6 1.1E+02 0.0078 18.4 0.0 13 14-26 2-14 (38)
8 d1oedc_ f.36.1.1 (C:) Acetylch 3.2 9.2E+02 0.067 18.2 6.4 17 133-149 9-25 (260)
9 d1oedb_ f.36.1.1 (B:) Acetylch 3.0 8.1E+02 0.059 18.6 5.4 17 134-150 10-26 (250)
10 d1nekd_ f.21.2.2 (D:) Succinat 2.4 5.6E+02 0.041 17.7 3.2 19 313-331 15-33 (113)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.58 E-value=55 Score=20.69 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=12.6
Q ss_pred HHHHHHHhhHHHHHHHH
Q 019423 278 TLLLSYTTGYVAPLLLA 294 (341)
Q Consensus 278 llll~fgLG~~lPLlll 294 (341)
...+.||.|++.|++++
T Consensus 23 ~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHH
Confidence 33445899999998875
No 2
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.40 E-value=4.3e+02 Score=19.65 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 019423 317 MSGALLLGGGLYTFLDRLFPT 337 (341)
Q Consensus 317 isGilLI~~Giy~ll~~~~p~ 337 (341)
.+-.++++.+++-.+..++|.
T Consensus 112 ~~~~~ll~~a~~gi~~~~l~~ 132 (146)
T d2uuia1 112 RALWLLVALAALGLLAHFLPA 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555655555555554
No 3
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.60 E-value=1.3e+02 Score=19.16 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=14.3
Q ss_pred ccccceeeeeccCCC-cccccccC
Q 019423 6 NQSVHFSRISCHQRS-TAYGKQMA 28 (341)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~ 28 (341)
-++|.||+-+ .++ .-|++|++
T Consensus 28 GnrvEyCrC~--~G~~~CHsVPv~ 49 (50)
T d1tpna_ 28 SNRVEYCWCN--SGRAQCHSVPVK 49 (50)
T ss_dssp SSCCEEEECS--SSSCEEEECCCC
T ss_pred CCceEEEEEC--CCCccccccccC
Confidence 4678899854 444 66888764
No 4
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=1.3e+02 Score=16.80 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=11.8
Q ss_pred eeee-eccCCCcccccc
Q 019423 11 FSRI-SCHQRSTAYGKQ 26 (341)
Q Consensus 11 ~~~~-~~~~~~~~~~~~ 26 (341)
+||| .|-.++.+|+.-
T Consensus 3 ycripac~agerrygtc 19 (30)
T d1dfna_ 3 YCRIPACIAGERRYGTC 19 (30)
T ss_dssp EEESSCCCTTCCEEEEE
T ss_pred eeecchhhcCccceeeE
Confidence 6888 677777777653
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.20 E-value=7.5e+02 Score=18.96 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=12.8
Q ss_pred CCCCccchHHHHHHHHhh
Q 019423 133 LSPCTLSVLPLTLGYIGA 150 (341)
Q Consensus 133 lsPCvlp~lp~~l~~l~~ 150 (341)
+.||++-++-..+++...
T Consensus 9 ilP~~li~~ls~~~F~lp 26 (260)
T d1oede_ 9 IAPCVLISSLVVLVYFLP 26 (260)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheEec
Confidence 359987777777777653
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.70 E-value=8.1e+02 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 019423 198 LAASGLAIVMGL 209 (341)
Q Consensus 198 ~i~GillIl~GL 209 (341)
++.+++.++..+
T Consensus 383 ~~~~~~~~~~~~ 394 (417)
T d1pv7a_ 383 LVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 7
>d1xu1r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 13B, TACI {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=1.1e+02 Score=18.43 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=9.3
Q ss_pred eeccCCCcccccc
Q 019423 14 ISCHQRSTAYGKQ 26 (341)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (341)
++|++++|+|-.+
T Consensus 2 l~C~keqG~YYD~ 14 (38)
T d1xu1r_ 2 LSCRKEQGKFYDH 14 (38)
T ss_dssp CCCCGGGTEEEET
T ss_pred cchHHhhchHHHH
Confidence 5788888877544
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.17 E-value=9.2e+02 Score=18.20 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=11.8
Q ss_pred CCCCccchHHHHHHHHh
Q 019423 133 LSPCTLSVLPLTLGYIG 149 (341)
Q Consensus 133 lsPCvlp~lp~~l~~l~ 149 (341)
+.||++-++-..+++..
T Consensus 9 ~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 9 ITPCVLISFLASLAFYL 25 (260)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeee
Confidence 35888777766677755
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.04 E-value=8.1e+02 Score=18.60 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=11.8
Q ss_pred CCCccchHHHHHHHHhh
Q 019423 134 SPCTLSVLPLTLGYIGA 150 (341)
Q Consensus 134 sPCvlp~lp~~l~~l~~ 150 (341)
.||++-+.-..+++...
T Consensus 10 ~P~~~i~~l~~~~f~~p 26 (250)
T d1oedb_ 10 IPCILISILAILVFYLP 26 (250)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheec
Confidence 58887777667777653
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=2.41 E-value=5.6e+02 Score=17.75 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 019423 313 WINPMSGALLLGGGLYTFL 331 (341)
Q Consensus 313 ~i~~isGilLI~~Giy~ll 331 (341)
+.+|+++++++...+|+.+
T Consensus 15 ~~qRvSAv~l~~l~~~~~~ 33 (113)
T d1nekd_ 15 ILVRATAIVLTLYIIYMVG 33 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999888665
Done!