Query 019424
Match_columns 341
No_of_seqs 136 out of 414
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 1.7E-86 3.6E-91 653.5 26.2 301 5-341 1-314 (374)
2 KOG2777 tRNA-specific adenosin 100.0 9.2E-80 2E-84 617.9 20.0 298 5-341 173-480 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 5.9E-75 1.3E-79 567.5 10.9 275 51-341 1-289 (343)
4 COG0590 CumB Cytosine/adenosin 72.4 18 0.0004 31.6 7.5 34 46-88 38-71 (152)
5 TIGR02571 ComEB ComE operon pr 42.4 98 0.0021 27.0 6.7 13 131-143 88-100 (151)
6 PRK10860 tRNA-specific adenosi 39.4 25 0.00055 31.4 2.7 13 74-86 61-73 (172)
7 cd01285 nucleoside_deaminase N 36.6 34 0.00073 27.8 2.8 16 131-146 68-83 (109)
8 cd01283 cytidine_deaminase Cyt 30.0 33 0.00071 27.9 1.7 18 130-147 65-87 (112)
9 PF15134 DUF4570: Domain of un 28.2 34 0.00074 28.5 1.4 23 70-95 10-32 (109)
10 cd01284 Riboflavin_deaminase-r 25.8 45 0.00097 27.8 1.8 36 34-85 20-55 (115)
11 PF14737 DUF4470: Domain of un 24.4 57 0.0012 26.1 2.1 45 45-89 23-76 (100)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=1.7e-86 Score=653.50 Aligned_cols=301 Identities=43% Similarity=0.688 Sum_probs=242.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEeeCCCcccCCcCCCCCCcccchHHHHHHHHH
Q 019424 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (341)
Q Consensus 5 ~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~-~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (341)
.|||+||++|+++|++||++|||..+||||||||||+++. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 3799999999999999999999999999999999999874 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeEeeCCC-CceeeeCCcEEEEEeccCCCCccccccccCCCCCCCC---cC
Q 019424 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS---RE 159 (341)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~~~---~~ 159 (341)
|+||||+||+++.++ . .+.||+..++ ++|+||+||+||||||++|||||||+.+.....+... ..
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999988642 1 3457777554 4999999999999999999999999976543322100 00
Q ss_pred -----CCCCCcccccCCccccccccccccceeeeCCCCC--CcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 019424 160 -----GNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (341)
Q Consensus 160 -----~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGrg--d~t~smSCSDKl~~WnvlGlQGaLLs~~iePiylssivi 232 (341)
+.........+|+ .+++..|+|||||||+ ++|+||||||||+|||||||||||||||||||||++|||
T Consensus 150 ~~~~~~~~~~~~~~~~g~-----~~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGT-----VPVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCc-----ccccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 0011111222333 2366789999999998 579999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhhhhhccccccccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCCC-eeeE
Q 019424 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI 311 (341)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Evi 311 (341)
|.... ..++|+|||++|+.++ ..+|.+|.+++|++...+ ..+|.. .....+ ..|+||+.++. .|++
T Consensus 225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~~--~~~~~~---~~~~s~-~~Sl~W~~~~~~~ev~ 291 (374)
T smart00552 225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLVS--VADFQR---QTAKSP-NFSVNWSQGDESLEIL 291 (374)
T ss_pred cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeeccC--cccccc---cCCCCC-CCeEEEEeCCCcEEEE
Confidence 96432 2469999999999987 678999999999986533 234521 111122 24899998765 8999
Q ss_pred ECCCCeeCCcCCCCCCCCCccchhhhhhcC
Q 019424 312 LGTTGRKQGTSAKGALSPSTQSSLCKFFCL 341 (341)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~S~LCK~~l~ 341 (341)
+|.+|++++ .++++|+|||++|+
T Consensus 292 ng~~G~~~~-------~~~~~S~lcK~~l~ 314 (374)
T smart00552 292 NGLTGKTQK-------SLGSPSRLCKKALF 314 (374)
T ss_pred ECcCCeECC-------CCCCccHHHHHHHH
Confidence 999999983 35678999999874
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=9.2e-80 Score=617.89 Aligned_cols=298 Identities=41% Similarity=0.655 Sum_probs=244.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEeeCCCcccCCcCCCCCCcccchHHHHHHHHH
Q 019424 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (341)
Q Consensus 5 ~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~-~~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (341)
.++|+||++|+++|++|+++|+|..+|||||||||+.. +..+.+||||||||||++++.|+.+|.+|||||||||||||
T Consensus 173 ~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR~ 252 (542)
T KOG2777|consen 173 TLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARRG 252 (542)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHHH
Confidence 58999999999999999999999999999999999987 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeEeeCCCC-ceeeeCCcEEEEEeccCCCCccccccccCCCCCC-----CC
Q 019424 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-----FS 157 (341)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~-----~~ 157 (341)
|+||||+||+.+.+. ..+.||+..++| +|+||+||.||||||++|||||+++.......+. ..
T Consensus 253 llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~~ 321 (542)
T KOG2777|consen 253 LLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNST 321 (542)
T ss_pred HHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCch
Confidence 999999999998642 145678765544 6999999999999999999999998765432221 11
Q ss_pred cCCCCCCcccccCCccccccccccccceeeeCCCC--CCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCCC
Q 019424 158 REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRS 235 (341)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGr--gd~t~smSCSDKl~~WnvlGlQGaLLs~~iePiylssivig~~ 235 (341)
..+..+..+..++|+. .++..+.||||||| |++++||||||||+|||||||||||||||+|||||+|||||..
T Consensus 322 ~~~~~~~~~~~g~g~~-----~~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~~ 396 (542)
T KOG2777|consen 322 RRGQLRTKIESGEGTI-----PVGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGKS 396 (542)
T ss_pred hhhccchhhhcccccc-----ccCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEeccc
Confidence 2233333334455543 36678999999999 8899999999999999999999999999999999999999975
Q ss_pred CCCCCCcchhhhhhhhhccccccccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCC-CeeeEECC
Q 019424 236 PNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVILGT 314 (341)
Q Consensus 236 ~~~~~~~~~~~~l~Ral~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi~~~ 314 (341)
.++. ++|.|||+.|+......+|++|.+|+|+++..+ +.+ + .+..++++|+||+.++ +.||++..
T Consensus 397 ~~~~------~~L~rAi~~R~~~~~~~lp~~~~~n~p~~~~v~--~~~-r-----~~~~~~~~slnW~~~~~~~ev~d~~ 462 (542)
T KOG2777|consen 397 LHSP------EHLSRAIHGRLSNFLGNLPPPYILNPPLLSRVS--DAE-R-----QPGKMTPFSLNWSLGDYDLEVNDVT 462 (542)
T ss_pred cCCH------HHHHHHHhcccccccCCCCCceeecCcccccCC--HhH-h-----ccccCCceeeeeecCCcceEecccc
Confidence 5432 599999999999833448999999999887643 222 2 2333445899999877 78999888
Q ss_pred CCeeCCcCCCCCCCCCccchhhhhhcC
Q 019424 315 TGRKQGTSAKGALSPSTQSSLCKFFCL 341 (341)
Q Consensus 315 ~G~k~G~~~K~~~~~~~~S~LCK~~l~ 341 (341)
||++-+ +.+|||||++|+
T Consensus 463 ~G~~~~---------~~~srlcK~~~~ 480 (542)
T KOG2777|consen 463 TGRTSL---------GSASRLCKASLF 480 (542)
T ss_pred cCcccC---------CCccHHHHHHHH
Confidence 888422 346999999873
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=5.9e-75 Score=567.47 Aligned_cols=275 Identities=42% Similarity=0.662 Sum_probs=147.8
Q ss_pred EEeeCCCcccCCcCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhccCCCccccccCCCCCeeEeeC--CCCceeeeCC
Q 019424 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (341)
Q Consensus 51 slgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (341)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+.++... ...+.||+.. .+++|+||+|
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence 799999999999999999999999999999999999999999998653100 0123466654 5679999999
Q ss_pred cEEEEEeccCCCCccccccccCCCCCCC-CcCCC----CCCcccccCCc-------cccccccccccceeeeCCCCCCcc
Q 019424 129 WQLHLYISQLPCGDASLSSCHSAPRNFF-SREGN----SLSSVDELNGF-------KDGIYDSLQHIGRVQRKPGRGDTT 196 (341)
Q Consensus 129 v~lhlYiS~~PCGdAsi~~~~~~~~~~~-~~~~~----~~~~~~~~~g~-------~~~~~~~~~~~g~vrtKPGrgd~t 196 (341)
|+||||||++|||||||+.+.....+.. ..+.+ ..... ...+. .......++..|++||||||||++
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~ 152 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKI-TGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRT 152 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEE-TSSSEEE--SS----------HHHHH-----TT---
T ss_pred eEEEEEeccCccCcccccccccccccccccccccccccccccc-CCCcccCCCccccccccccccCCceeeeeccccCCC
Confidence 9999999999999999998765211100 00000 00000 01111 011124678899999999999999
Q ss_pred cccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCCCCCCCCCcchhhhhhhhhccccccccccCCCCceeccceEEe
Q 019424 197 LSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLA 276 (341)
Q Consensus 197 ~smSCSDKl~~WnvlGlQGaLLs~~iePiylssivig~~~~~~~~~~~~~~l~Ral~~R~~~~~~~l~~~~~~~~p~~~~ 276 (341)
.||||||||++||||||||||||||||||||++||||..+. + .+++|+|||++|+......+|+||++++|++..
T Consensus 153 ~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~-~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 153 PSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----F-SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred cceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----C-CHHHHHhhhhcccccccccCCCCceecCcceee
Confidence 99999999999999999999999999999999999997642 1 246899999999955556789999999998874
Q ss_pred cCCCCcccccCcccccccCccccEEeeCCCCeeeEECCCCeeCCcCCCCCCCCCccchhhhhhcC
Q 019424 277 ASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKFFCL 341 (341)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~~Evi~~~~G~k~G~~~K~~~~~~~~S~LCK~~l~ 341 (341)
.... .............++++|++|+.....|+++ +|+|+|.++|+...++++|+|||++|+
T Consensus 228 ~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck~~l~ 289 (343)
T PF02137_consen 228 SSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCKAALF 289 (343)
T ss_dssp ------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSHHHHH
T ss_pred cccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccHHHHH
Confidence 2210 1222333444567889999999855667777 999999988888999999999999873
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=72.39 E-value=18 Score=31.59 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=22.5
Q ss_pred CeEEEEEeeCCCcccCCcCCCCCCcccchHHHHHHHHHHHHHH
Q 019424 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (341)
Q Consensus 46 ~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L 88 (341)
+-++|+-|-.+..-..+-.. ||||+|.|.+-+-|
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~~ 71 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAETL 71 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHhh
Confidence 45778777777554433221 99999999885443
No 5
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=42.37 E-value=98 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.864 Sum_probs=10.5
Q ss_pred EEEEeccCCCCcc
Q 019424 131 LHLYISQLPCGDA 143 (341)
Q Consensus 131 lhlYiS~~PCGdA 143 (341)
..||+|..||--+
T Consensus 88 ~tlYvT~ePC~~C 100 (151)
T TIGR02571 88 AEIYVTHFPCLQC 100 (151)
T ss_pred cEEEEeCCCcHHH
Confidence 5689999999643
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=39.44 E-value=25 Score=31.40 Aligned_cols=13 Identities=46% Similarity=0.319 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHH
Q 019424 74 SHAEIVARRALLR 86 (341)
Q Consensus 74 ~HAEVLARR~f~r 86 (341)
.|||+.|.|...+
T Consensus 61 ~HAEi~Ai~~a~~ 73 (172)
T PRK10860 61 AHAEIMALRQGGL 73 (172)
T ss_pred cCHHHHHHHHHHH
Confidence 6999999987643
No 7
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=36.57 E-value=34 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q 019424 131 LHLYISQLPCGDASLS 146 (341)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (341)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 6789999999766664
No 8
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=30.03 E-value=33 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.1
Q ss_pred EEEEEec-----cCCCCcccccc
Q 019424 130 QLHLYIS-----QLPCGDASLSS 147 (341)
Q Consensus 130 ~lhlYiS-----~~PCGdAsi~~ 147 (341)
..-+|+| -+|||.++-..
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~l 87 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQVL 87 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHHH
Confidence 3568888 89999988754
No 9
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=28.23 E-value=34 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Q 019424 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (341)
Q Consensus 70 ~lhD~HAEVLARR~f~r~Ly~el~~~ 95 (341)
-|++-|.|||++|.+ |+++++..
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367899999999987 66666664
No 10
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=25.82 E-value=45 Score=27.75 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=23.0
Q ss_pred eEEEEEEeeCCCCeEEEEEeeCCCcccCCcCCCCCCcccchHHHHHHHHHHH
Q 019424 34 VLAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALL 85 (341)
Q Consensus 34 vLA~iVl~~~~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~ 85 (341)
.++|+|+.. +-+||+.|.-... -..|||+.|.|.+.
T Consensus 20 pvGaviv~~---~g~iv~~g~n~~~-------------~~~HAE~~ai~~a~ 55 (115)
T cd01284 20 PVGCVIVDD---DGEIVGEGYHRKA-------------GGPHAEVNALASAG 55 (115)
T ss_pred CEEEEEEeC---CCeEEEEecCCCC-------------CcccHHHHHHHHHh
Confidence 456655532 2588877665422 24699999998763
No 11
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=24.40 E-value=57 Score=26.11 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=28.3
Q ss_pred CCeEEEEEeeCC-----CcccCCcCCCCC----CcccchHHHHHHHHHHHHHHH
Q 019424 45 KDLEVVALGTGT-----KCIGRSLLSPHG----DIVNDSHAEIVARRALLRFFY 89 (341)
Q Consensus 45 ~~~~vVslgTGt-----Kc~~~~~l~~~G----~~lhD~HAEVLARR~f~r~Ly 89 (341)
+++.++=+|.|. +.+-.......+ -.|+|.++||+||--|+-.+.
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHH
Confidence 346666677774 111111111222 489999999999999877775
Done!