Query 019424
Match_columns 341
No_of_seqs 136 out of 414
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 1.5E-82 5.2E-87 629.4 21.4 301 4-341 23-335 (403)
2 1p6o_A Cytosine deaminase; hyd 53.2 3.6 0.00012 35.0 0.6 15 131-145 85-99 (161)
3 1wwr_A TRNA adenosine deaminas 46.8 6.8 0.00023 33.7 1.4 16 131-146 93-108 (171)
4 2a8n_A Cytidine and deoxycytid 46.4 8.3 0.00028 31.9 1.9 16 131-146 74-89 (144)
5 2b3j_A TRNA adenosine deaminas 43.8 11 0.00036 31.9 2.1 16 131-146 77-92 (159)
6 1z3a_A TRNA-specific adenosine 42.5 8.1 0.00028 33.0 1.2 16 131-146 79-94 (168)
7 2nx8_A TRNA-specific adenosine 39.5 20 0.00068 30.9 3.3 15 131-145 86-100 (179)
8 2g84_A Cytidine and deoxycytid 39.1 18 0.00062 31.6 3.0 15 131-145 105-119 (197)
9 1wkq_A Guanine deaminase; doma 38.7 21 0.00071 30.4 3.2 15 131-145 82-96 (164)
10 3v4k_A DNA DC->DU-editing enzy 29.7 11 0.00036 33.6 -0.2 19 128-146 99-117 (203)
11 3dh1_A TRNA-specific adenosine 28.9 49 0.0017 28.7 4.0 15 74-88 74-88 (189)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-82 Score=629.36 Aligned_cols=301 Identities=36% Similarity=0.583 Sum_probs=235.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEeeCCCcccCCcCCCCCCcccchHHHHHHH
Q 019424 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (341)
Q Consensus 4 ~~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~--~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLAR 81 (341)
..|||+||++|+++|++|+++|||...|||||||||++.+ .++++||||||||||+++++++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 3689999999999999999999999899999999999975 24799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccccccCCCCCeeEeeCCCCceeeeCCcEEEEEeccCCCCccccccccCCCCCC-----C
Q 019424 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-----F 156 (341)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~-----~ 156 (341)
|||+||||+||+.+.... ++. ...||+..+.|+|+||+||+||||||++|||||||+.+....... +
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998875210 011 245888888889999999999999999999999998764321110 0
Q ss_pred C--cCCCCCCcccccCCccccccccccccceeeeCCC--CCCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 019424 157 S--REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (341)
Q Consensus 157 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPG--rgd~t~smSCSDKl~~WnvlGlQGaLLs~~iePiylssivi 232 (341)
. ..+.+...+..++|+.... ..+.++|+|| ||++|+||||||||+|||||||||||||||+|||||++|||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 0 1122222223333333211 1233456666 78999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhhhhhhhhccccccccccCCCCceeccceEEecCCCCcccccCcccccccCccccEEeeCCC-CeeeE
Q 019424 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI 311 (341)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi 311 (341)
|.+++ .++|+|||++|+..+ ..+|+||++++|++...+.. +.+ .+..++++|+||+.++ ..||+
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~~Evi 314 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSAIEVI 314 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSSCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCceEEE
Confidence 98753 368999999999875 46899999999998764332 222 1223557899999764 59999
Q ss_pred ECCCCeeCCcCCCCCCCCCccchhhhhhcC
Q 019424 312 LGTTGRKQGTSAKGALSPSTQSSLCKFFCL 341 (341)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~S~LCK~~l~ 341 (341)
++.+||+. ++++|+|||++|+
T Consensus 315 ~g~tGk~~---------~~~~SrlcK~~l~ 335 (403)
T 1zy7_A 315 NATTGKDE---------LGRASRLCKHALY 335 (403)
T ss_dssp ETTTTEET---------TSCCCTTSHHHHH
T ss_pred ECCCCCCC---------cCCcCHHHHHHHH
Confidence 99999842 2457999999873
No 2
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=53.17 E-value=3.6 Score=35.04 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 019424 131 LHLYISQLPCGDASL 145 (341)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (341)
.-||+|..||+-+..
T Consensus 85 ~tlYvT~EPC~mC~~ 99 (161)
T 1p6o_A 85 TTLYTTLSPCDMCTG 99 (161)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred cccccCCCCCHHHHH
Confidence 467999999986655
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=46.77 E-value=6.8 Score=33.70 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q 019424 131 LHLYISQLPCGDASLS 146 (341)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (341)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877764
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=46.37 E-value=8.3 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.6
Q ss_pred EEEEeccCCCCccccc
Q 019424 131 LHLYISQLPCGDASLS 146 (341)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (341)
.-||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 3579999999877664
No 5
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=43.76 E-value=11 Score=31.91 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.7
Q ss_pred EEEEeccCCCCccccc
Q 019424 131 LHLYISQLPCGDASLS 146 (341)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (341)
.-||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 4689999999877654
No 6
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=42.48 E-value=8.1 Score=33.02 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.3
Q ss_pred EEEEeccCCCCccccc
Q 019424 131 LHLYISQLPCGDASLS 146 (341)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (341)
.-||+|..||+-++.-
T Consensus 79 ~tlYvTlEPC~mC~~a 94 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAGA 94 (168)
T ss_dssp CEEEEEECCCHHHHHH
T ss_pred cEEEEcCCCcHHHHHH
Confidence 3689999999866653
No 7
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=39.48 E-value=20 Score=30.93 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcccc
Q 019424 131 LHLYISQLPCGDASL 145 (341)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (341)
.-||+|-.||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 468999999976655
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=39.12 E-value=18 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 019424 131 LHLYISQLPCGDASL 145 (341)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (341)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 568999999974443
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=38.70 E-value=21 Score=30.39 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcccc
Q 019424 131 LHLYISQLPCGDASL 145 (341)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (341)
.-||+|..||+-++.
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 368999999976654
No 10
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=29.67 E-value=11 Score=33.64 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=15.9
Q ss_pred CcEEEEEeccCCCCccccc
Q 019424 128 GWQLHLYISQLPCGDASLS 146 (341)
Q Consensus 128 ~v~lhlYiS~~PCGdAsi~ 146 (341)
.+++-.|+|-+||-+++-.
T Consensus 99 ~Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 99 DYRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred eEEEEEEEeCCChHHHHHH
Confidence 3679999999999987754
No 11
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=28.91 E-value=49 Score=28.71 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 019424 74 SHAEIVARRALLRFF 88 (341)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (341)
.||||.|.|...+++
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 699999999887664
Done!