BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019425
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 44/248 (17%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY + HA +H+ DT H Y+++L TQ++WDY GDNYVHRL QS+ DGKLVE+
Sbjct: 284 RYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVEL--------- 334
Query: 160 HCGTCECSEDSGISGALFNSKVEAIVD-----EYNRLLATQLETQRQYYESLLAEAKSK- 213
S D SG +S E+ + EY ++L +QLE+QR YYES L+ K
Sbjct: 335 -------STDGKSSGWTGSSATESKLRDKMGLEYTQILVSQLESQRLYYESHLSNMSQKL 387
Query: 214 ---RESLIPET-VEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269
E L+ +T + A ++ D+++ +DI E K D ++ E ++ ++E +
Sbjct: 388 SRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEK 447
Query: 270 ERE------ITSLRLRDAT-----------ILDLEEQIRDLTVYIEAQKTLTNMTDSDGI 312
I +L ++ T I DL EQ+RDL I A + + M S+ +
Sbjct: 448 SMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEEL 507
Query: 313 KGGT-VLP 319
+ GT VLP
Sbjct: 508 QNGTIVLP 515
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 42/230 (18%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY HA +H+++TQH Y++ L ++WDY GDNYVHRL SK DGK+V+ +E
Sbjct: 339 RYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQ-------YEC 391
Query: 160 HCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLL-------AEAKS 212
TC+ K++A+ EY+ LL +QLE+QR Y+E+ + AE +
Sbjct: 392 EGDTCQ------------EEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEIN 439
Query: 213 KRESLIPETVEKA--VASKMQDIQNELDI----CEEAKKAVA----------DVNSKLIK 256
++ ET+EK + K+ D+ E C + VA ++N L
Sbjct: 440 NMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRA 499
Query: 257 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNM 306
NQ +++ K KE E + +D I +++EQ+RD+ Y+E Q+ + ++
Sbjct: 500 NQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHL 549
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 37 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96
NP G++HL++ + + RS + ++ VP ++S + ++F + +E++
Sbjct: 132 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQM 191
Query: 97 IFIR 100
IR
Sbjct: 192 KIIR 195
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 42/243 (17%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY E HA RHW+ T H YSL + +++WDY GDNYVHRL ++ ADGKLVE E+
Sbjct: 332 RYAEQHAQRHWELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQ-----RES 386
Query: 160 HCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESL---LAEAKSKRES 216
+ + ++ G K+E I EY LL +QLE QR+Y+E L + + SK E
Sbjct: 387 NASFDDKNQKGG-------DKLEGIKLEYTLLLTSQLEDQRKYFEGLRHDMEQTMSKMEK 439
Query: 217 LIPETVEKAV------ASKMQDIQNELDICEEAKKAVA---------------------D 249
VE +++++ ++ +LD A+K +
Sbjct: 440 TAYAQVENLEHQLTERSTELKSLKGDLDDTVTARKVAEKRATQTNEKVNKLANELKDERE 499
Query: 250 VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDS 309
+N L K+Q++ + + +++ E + T+ + I DL+ Q+ DL ++ E Q L D+
Sbjct: 500 INQMLRKDQQVWKGQVEKLIESQKTARTEYEKKIEDLQSQVNDLLMHFETQNKLKEQLDA 559
Query: 310 DGI 312
I
Sbjct: 560 GKI 562
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 138/245 (56%), Gaps = 33/245 (13%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEM--------- 150
RY HA++H+++T H +++D+RTQ++WDY GDNYVHRL Q++ DGKLVE+
Sbjct: 323 RYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNEVDGKLVEVGGSGDDDNN 382
Query: 151 ---NSPCMSHEAHCGTCECSEDS------GISGALFNSKVEAIVDEYNRLLATQLETQRQ 201
NS + + + + E S G A F E + EY ++L +QLE+QR+
Sbjct: 383 DIGNSDELQNVVYGNRSKNGEKSNSNKKDGELAANFLRHREYHL-EYVQVLISQLESQRE 441
Query: 202 YYESLLAEA-KSKRESLIPETVEKAVAS---KMQDIQNELDICEEAKKAVADVNSKLIK- 256
YYE L E ++ +S E+++K++ + Q Q E E A+K+ + + +I+
Sbjct: 442 YYELKLQEKDQTASDSSNVESLKKSMEDLKLQFQVTQKEWQKREMAQKSKLEEDMLVIEG 501
Query: 257 ---NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIK 313
N + + KK +++ ERE +L + + DLEEQ++DL Y+++Q+ + +S +K
Sbjct: 502 LQANLDHLSKKQEQL-ERENKAL---EESKQDLEEQVKDLMFYLDSQEKFKDADES--VK 555
Query: 314 GGTVL 318
GT+L
Sbjct: 556 EGTIL 560
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 42/230 (18%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY HA +H+++TQH Y++ L ++WDY GDNYVHRL SK DGK+V+ +E
Sbjct: 338 RYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQ-------YEC 390
Query: 160 HCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLL-------AEAKS 212
TC+ K++A+ EY+ LL +QLE+QR Y+E+ + AE +
Sbjct: 391 EGDTCQ------------EEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEIN 438
Query: 213 KRESLIPETVEK--AVASKMQDIQNELDI----CEEAKKAVA----------DVNSKLIK 256
++ ET+EK ++ ++ D+ E C + VA ++N L
Sbjct: 439 NMKTKFKETIEKCDSLELRLSDLLKEKQSVERKCTQLNTRVAKLSTELQEEQELNKCLRA 498
Query: 257 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNM 306
NQ +++ + KE E+ + +D I +++EQ+RD+ Y+E Q+ ++++
Sbjct: 499 NQLVLQNQLKEEEKLLKETCAQKDLQITEIQEQLRDVMFYLETQQQISHL 548
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 37 NPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEEL 96
NP G++HL++ + + RS + V+ VP ++S + ++F D +E++
Sbjct: 131 NPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQM 190
Query: 97 IFIR 100
IR
Sbjct: 191 KIIR 194
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 136
R+ GHA H+++T+H S W Y D YVH
Sbjct: 56 RHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYVH 92
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 135
RY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 48 RYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 135
RY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 48 RYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 135
RY E HA+RH++D++H +L++ ++ Y+ D+YV
Sbjct: 48 RYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYV 83
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMN-SPCMSHE 158
RY E HA++H++++ H +L++ ++ Y+ D+YV N + D KL+ S S
Sbjct: 51 RYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLNDN-TTGDLKLLRRTLSAIKSQN 109
Query: 159 AHCGT 163
HC T
Sbjct: 110 YHCTT 114
>sp|A1DFP5|VPS27_NEOFI Vacuolar protein sorting-associated protein 27 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=vps27 PE=3 SV=1
Length = 729
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 216 SLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER---- 271
SL+ E VE+A +S ++DI L+I + + SK ++ +E MR + +E R
Sbjct: 9 SLLDEQVERATSSSLEDIALNLEISDL-------IRSKSVQPKEAMRSLKRRLENRNPNV 61
Query: 272 EITSLRLRDATI 283
+I +L+L D +
Sbjct: 62 QIATLKLTDTCV 73
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY E HA++H++++ H +L++ ++ Y+ D+YV N + L M S S
Sbjct: 51 RYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYVLNDNATGDLKLLRSMLSAIKSQNY 110
Query: 160 HCGT 163
C T
Sbjct: 111 QCTT 114
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
RY E HA++H+K+ H +L++ ++ Y+ D+YV LN + A G L + S + ++
Sbjct: 48 RYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV--LNDN-ATGDLKLLRSTLSAIKS 104
Query: 160 HC 161
C
Sbjct: 105 QC 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,320,764
Number of Sequences: 539616
Number of extensions: 4768931
Number of successful extensions: 18564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 18375
Number of HSP's gapped (non-prelim): 507
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)