Query 019425
Match_columns 341
No_of_seqs 219 out of 350
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 100.0 1.7E-77 3.7E-82 589.8 27.6 318 1-340 4-492 (493)
2 PF02148 zf-UBP: Zn-finger in 99.3 1.3E-12 2.8E-17 99.1 2.9 55 83-137 1-61 (63)
3 KOG0804 Cytoplasmic Zn-finger 98.9 1.5E-08 3.2E-13 102.0 14.2 274 11-323 166-480 (493)
4 smart00290 ZnF_UBP Ubiquitin C 98.3 3E-07 6.4E-12 66.0 2.5 45 82-126 1-50 (50)
5 cd02669 Peptidase_C19M A subfa 98.3 6.1E-07 1.3E-11 91.2 4.4 60 78-137 14-78 (440)
6 PF07576 BRAP2: BRCA1-associat 98.0 7.8E-06 1.7E-10 69.0 4.3 76 56-138 3-95 (110)
7 COG5207 UBP14 Isopeptidase T [ 97.8 1.2E-05 2.6E-10 82.8 3.2 55 81-135 174-243 (749)
8 KOG0944 Ubiquitin-specific pro 97.7 2.6E-05 5.6E-10 82.3 4.0 58 81-138 180-253 (763)
9 KOG1873 Ubiquitin-specific pro 97.3 0.00016 3.5E-09 77.2 2.9 47 89-135 90-145 (877)
10 PF00038 Filament: Intermediat 96.6 0.23 4.9E-06 47.9 18.0 111 177-289 167-277 (312)
11 PF00038 Filament: Intermediat 94.6 2.4 5.2E-05 40.8 16.7 109 192-301 167-282 (312)
12 COG1579 Zn-ribbon protein, pos 94.5 3.4 7.4E-05 39.5 16.9 80 226-305 94-188 (239)
13 PF10212 TTKRSYEDQ: Predicted 93.6 1.2 2.6E-05 46.8 12.9 92 200-300 415-506 (518)
14 PF06005 DUF904: Protein of un 92.5 2.8 6.1E-05 32.9 10.6 46 225-270 22-67 (72)
15 PF11559 ADIP: Afadin- and alp 92.4 4.9 0.00011 35.0 13.4 60 232-291 91-150 (151)
16 KOG0161 Myosin class II heavy 92.1 6 0.00013 47.8 17.2 120 182-301 1417-1546(1930)
17 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.9 7.5 0.00016 33.4 15.5 68 228-299 59-130 (132)
18 PF06785 UPF0242: Uncharacteri 91.6 6.4 0.00014 39.6 14.3 78 226-303 139-223 (401)
19 PF12325 TMF_TATA_bd: TATA ele 91.6 8.2 0.00018 33.2 14.3 39 258-296 70-111 (120)
20 PHA02562 46 endonuclease subun 91.1 13 0.00028 38.6 17.0 20 192-211 307-326 (562)
21 PF10211 Ax_dynein_light: Axon 90.9 8.9 0.00019 35.2 13.8 23 276-298 165-187 (189)
22 KOG0250 DNA repair protein RAD 89.7 14 0.00029 42.2 16.3 48 225-272 391-438 (1074)
23 KOG0964 Structural maintenance 89.2 6 0.00013 44.7 12.9 111 194-305 758-899 (1200)
24 PRK09039 hypothetical protein; 89.0 17 0.00037 36.3 15.2 31 260-290 169-199 (343)
25 TIGR02449 conserved hypothetic 88.9 5.3 0.00011 30.9 8.9 58 230-287 2-59 (65)
26 PF12718 Tropomyosin_1: Tropom 88.7 16 0.00034 32.1 13.6 12 281-292 129-140 (143)
27 PRK00409 recombination and DNA 88.7 13 0.00029 41.1 15.4 22 192-213 521-542 (782)
28 PF07888 CALCOCO1: Calcium bin 88.5 27 0.00059 37.3 16.8 16 178-193 142-157 (546)
29 KOG1655 Protein involved in va 88.1 13 0.00027 34.9 12.4 97 193-295 35-140 (218)
30 TIGR03825 FliH_bacil flagellar 87.2 23 0.00049 33.7 14.2 100 198-297 37-145 (255)
31 PF09731 Mitofilin: Mitochondr 86.5 45 0.00098 35.2 17.3 30 178-208 250-279 (582)
32 PF10168 Nup88: Nuclear pore c 86.3 39 0.00084 37.3 17.1 9 143-151 461-469 (717)
33 KOG0971 Microtubule-associated 86.3 13 0.00029 41.8 13.3 43 230-272 398-440 (1243)
34 KOG0971 Microtubule-associated 85.8 18 0.00039 40.8 14.0 29 232-260 459-490 (1243)
35 PF11932 DUF3450: Protein of u 85.4 31 0.00068 32.5 14.1 18 286-303 147-164 (251)
36 PF05700 BCAS2: Breast carcino 85.3 32 0.00069 32.1 13.9 46 248-293 160-208 (221)
37 KOG0977 Nuclear envelope prote 85.3 6.9 0.00015 41.6 10.4 56 243-298 311-366 (546)
38 PF08317 Spc7: Spc7 kinetochor 85.0 37 0.00081 33.4 14.9 18 281-298 251-268 (325)
39 PRK11637 AmiB activator; Provi 84.8 13 0.00029 37.7 12.1 14 281-294 117-130 (428)
40 COG1196 Smc Chromosome segrega 84.6 53 0.0011 38.0 17.9 22 192-213 345-366 (1163)
41 KOG4005 Transcription factor X 84.5 17 0.00037 35.0 11.6 37 232-268 101-137 (292)
42 KOG4643 Uncharacterized coiled 84.4 57 0.0012 37.4 17.1 36 226-261 413-448 (1195)
43 COG3937 Uncharacterized conser 84.3 14 0.00031 31.3 9.8 17 278-294 87-103 (108)
44 PF12718 Tropomyosin_1: Tropom 83.8 30 0.00064 30.4 14.6 48 226-273 40-90 (143)
45 PF08317 Spc7: Spc7 kinetochor 83.5 43 0.00093 33.0 14.6 31 275-305 238-268 (325)
46 PF10168 Nup88: Nuclear pore c 83.5 32 0.0007 37.9 14.9 21 236-256 580-600 (717)
47 PRK09039 hypothetical protein; 83.4 38 0.00081 33.9 14.3 41 255-295 143-186 (343)
48 PRK02224 chromosome segregatio 83.3 70 0.0015 35.4 17.7 29 184-213 469-497 (880)
49 PF04111 APG6: Autophagy prote 83.1 19 0.00041 35.6 11.9 15 197-211 22-36 (314)
50 COG1579 Zn-ribbon protein, pos 82.9 46 0.00099 32.0 15.3 29 179-211 13-41 (239)
51 TIGR03007 pepcterm_ChnLen poly 82.8 15 0.00032 37.8 11.6 34 181-214 144-177 (498)
52 PF09726 Macoilin: Transmembra 82.5 43 0.00093 36.8 15.3 37 260-296 542-581 (697)
53 PRK15422 septal ring assembly 82.3 16 0.00034 29.4 8.9 37 232-268 36-72 (79)
54 PRK10361 DNA recombination pro 82.1 47 0.001 34.9 14.8 14 256-269 147-160 (475)
55 PF10226 DUF2216: Uncharacteri 81.7 41 0.0009 31.3 12.6 40 254-301 106-145 (195)
56 KOG0995 Centromere-associated 81.6 46 0.001 35.7 14.6 22 193-214 282-303 (581)
57 KOG1103 Predicted coiled-coil 81.6 11 0.00023 38.4 9.4 34 258-295 254-287 (561)
58 PF15070 GOLGA2L5: Putative go 81.4 86 0.0019 34.1 17.6 31 182-213 7-37 (617)
59 PF14662 CCDC155: Coiled-coil 81.3 47 0.001 31.0 13.5 25 270-294 168-192 (193)
60 PRK12704 phosphodiesterase; Pr 81.3 75 0.0016 33.7 16.2 10 312-321 206-215 (520)
61 KOG0982 Centrosomal protein Nu 81.2 74 0.0016 33.2 15.8 67 184-250 248-319 (502)
62 KOG2002 TPR-containing nuclear 81.2 42 0.00091 38.1 14.7 7 89-95 679-685 (1018)
63 PF07798 DUF1640: Protein of u 81.0 42 0.0009 30.2 14.9 53 191-244 44-96 (177)
64 PF09304 Cortex-I_coil: Cortex 80.9 29 0.00062 29.5 10.4 28 242-269 37-64 (107)
65 PF09728 Taxilin: Myosin-like 80.8 61 0.0013 32.0 15.4 28 177-204 20-47 (309)
66 PRK10884 SH3 domain-containing 80.8 29 0.00063 32.4 11.7 26 231-256 121-146 (206)
67 KOG0996 Structural maintenance 80.6 47 0.001 38.5 15.0 26 281-306 998-1024(1293)
68 KOG0996 Structural maintenance 80.6 54 0.0012 38.1 15.4 36 178-213 784-821 (1293)
69 PF12325 TMF_TATA_bd: TATA ele 80.4 37 0.0008 29.2 12.4 23 192-214 24-46 (120)
70 TIGR01069 mutS2 MutS2 family p 80.2 34 0.00073 38.0 13.7 31 182-213 507-537 (771)
71 PF09731 Mitofilin: Mitochondr 80.2 84 0.0018 33.2 16.6 23 180-202 266-288 (582)
72 PF06705 SF-assemblin: SF-asse 80.1 54 0.0012 30.9 14.2 33 179-211 5-40 (247)
73 PF06825 HSBP1: Heat shock fac 80.1 7.9 0.00017 28.9 6.1 36 260-295 14-49 (54)
74 PF07888 CALCOCO1: Calcium bin 79.8 86 0.0019 33.6 15.9 43 230-272 187-229 (546)
75 COG5185 HEC1 Protein involved 79.6 79 0.0017 33.5 15.1 21 283-303 384-404 (622)
76 PF15619 Lebercilin: Ciliary p 79.1 21 0.00045 33.1 10.0 15 278-292 93-107 (194)
77 COG1196 Smc Chromosome segrega 78.6 59 0.0013 37.6 15.5 28 102-129 621-648 (1163)
78 KOG0288 WD40 repeat protein Ti 78.3 47 0.001 34.4 12.9 20 225-244 45-64 (459)
79 PF10046 BLOC1_2: Biogenesis o 77.9 37 0.00081 27.8 12.4 68 221-292 28-98 (99)
80 PF11180 DUF2968: Protein of u 77.7 61 0.0013 30.2 13.5 31 183-213 97-127 (192)
81 PF09726 Macoilin: Transmembra 77.1 45 0.00098 36.7 13.4 61 236-297 588-659 (697)
82 PF13863 DUF4200: Domain of un 76.9 42 0.00091 27.9 15.5 23 191-213 11-33 (126)
83 TIGR03752 conj_TIGR03752 integ 76.7 29 0.00063 36.4 11.2 75 225-299 63-141 (472)
84 COG4026 Uncharacterized protei 76.3 30 0.00066 33.2 10.3 38 233-270 140-177 (290)
85 PF06160 EzrA: Septation ring 75.8 1.2E+02 0.0025 32.4 17.1 32 178-213 59-90 (560)
86 smart00787 Spc7 Spc7 kinetocho 75.2 91 0.002 30.9 14.7 13 194-206 126-138 (312)
87 PF02403 Seryl_tRNA_N: Seryl-t 74.7 45 0.00097 27.2 11.2 66 228-297 36-104 (108)
88 KOG1853 LIS1-interacting prote 74.7 90 0.0019 30.6 14.3 25 281-305 164-188 (333)
89 PF09738 DUF2051: Double stran 74.3 47 0.001 32.9 11.6 62 232-297 109-170 (302)
90 PF11932 DUF3450: Protein of u 74.1 71 0.0015 30.1 12.5 68 231-298 52-127 (251)
91 COG3074 Uncharacterized protei 74.0 29 0.00064 27.4 8.0 34 232-265 36-69 (79)
92 COG3883 Uncharacterized protei 73.6 89 0.0019 30.5 13.0 18 253-270 77-94 (265)
93 PRK04778 septation ring format 73.5 1.2E+02 0.0027 32.2 15.4 32 178-213 63-94 (569)
94 TIGR00606 rad50 rad50. This fa 73.0 1.5E+02 0.0032 34.9 17.0 14 178-191 828-841 (1311)
95 PF12128 DUF3584: Protein of u 72.7 2E+02 0.0042 33.7 18.3 7 105-111 539-545 (1201)
96 COG2433 Uncharacterized conser 72.4 42 0.00092 36.3 11.3 15 310-324 540-554 (652)
97 KOG0579 Ste20-like serine/thre 72.3 1.6E+02 0.0035 32.9 15.6 26 187-212 812-837 (1187)
98 PF10473 CENP-F_leu_zip: Leuci 72.3 70 0.0015 28.3 15.9 45 228-272 59-103 (140)
99 PF15254 CCDC14: Coiled-coil d 72.3 1.1E+02 0.0023 34.3 14.4 44 249-293 502-548 (861)
100 KOG0161 Myosin class II heavy 72.3 2.4E+02 0.0051 34.9 18.4 71 234-304 963-1036(1930)
101 PF05791 Bacillus_HBL: Bacillu 72.1 73 0.0016 28.9 11.6 87 200-294 90-176 (184)
102 PF10473 CENP-F_leu_zip: Leuci 72.0 71 0.0015 28.3 15.2 69 225-293 63-138 (140)
103 cd00632 Prefoldin_beta Prefold 72.0 54 0.0012 26.9 10.4 12 281-292 91-102 (105)
104 PRK08476 F0F1 ATP synthase sub 71.7 67 0.0014 27.9 13.1 13 278-290 122-134 (141)
105 PF10267 Tmemb_cc2: Predicted 71.3 24 0.00051 36.3 9.0 63 227-293 225-288 (395)
106 PRK02224 chromosome segregatio 71.1 1.7E+02 0.0037 32.3 17.2 17 196-212 178-194 (880)
107 KOG4593 Mitotic checkpoint pro 71.1 1.5E+02 0.0032 32.8 15.0 28 278-305 272-299 (716)
108 KOG0976 Rho/Rac1-interacting s 71.0 85 0.0018 35.4 13.3 22 225-246 267-288 (1265)
109 KOG1962 B-cell receptor-associ 70.9 89 0.0019 29.6 12.0 17 188-204 86-102 (216)
110 KOG0995 Centromere-associated 70.7 93 0.002 33.5 13.3 42 261-302 472-513 (581)
111 TIGR03319 YmdA_YtgF conserved 69.9 1.5E+02 0.0034 31.3 16.3 12 310-321 198-209 (514)
112 TIGR02894 DNA_bind_RsfA transc 69.6 88 0.0019 28.4 11.3 52 249-304 104-155 (161)
113 PF13851 GAS: Growth-arrest sp 69.5 95 0.0021 28.7 14.7 24 180-203 10-33 (201)
114 PF00261 Tropomyosin: Tropomyo 69.2 1E+02 0.0022 28.9 13.4 17 282-298 198-214 (237)
115 PF15233 SYCE1: Synaptonemal c 69.0 71 0.0015 28.1 10.1 20 230-249 36-55 (134)
116 PF04576 Zein-binding: Zein-bi 68.8 67 0.0015 26.7 12.7 26 191-216 3-28 (94)
117 TIGR03752 conj_TIGR03752 integ 68.1 48 0.0011 34.8 10.5 42 249-294 102-143 (472)
118 PF15070 GOLGA2L5: Putative go 67.9 1.7E+02 0.0036 31.9 14.9 44 226-269 165-215 (617)
119 KOG3759 Uncharacterized RUN do 67.8 1.6E+02 0.0035 31.2 14.0 53 247-299 186-245 (621)
120 PF10267 Tmemb_cc2: Predicted 67.6 59 0.0013 33.4 10.9 67 229-298 252-318 (395)
121 PF11166 DUF2951: Protein of u 67.4 73 0.0016 26.6 9.8 17 198-214 4-20 (98)
122 COG2433 Uncharacterized conser 67.2 48 0.001 35.9 10.4 40 229-268 423-462 (652)
123 PF06632 XRCC4: DNA double-str 67.0 63 0.0014 32.6 10.8 17 229-245 159-175 (342)
124 TIGR03185 DNA_S_dndD DNA sulfu 66.7 73 0.0016 34.3 12.0 13 282-294 301-313 (650)
125 KOG2891 Surface glycoprotein [ 66.4 1.1E+02 0.0023 30.6 11.8 17 117-133 237-253 (445)
126 PF03961 DUF342: Protein of un 66.4 55 0.0012 33.6 10.6 17 31-47 61-77 (451)
127 PF08581 Tup_N: Tup N-terminal 66.1 67 0.0014 25.7 10.8 32 259-290 42-73 (79)
128 PF12128 DUF3584: Protein of u 66.0 1.9E+02 0.0041 33.8 15.8 11 283-293 773-783 (1201)
129 PRK06231 F0F1 ATP synthase sub 65.8 1.1E+02 0.0025 28.2 14.4 22 192-213 73-94 (205)
130 PF00769 ERM: Ezrin/radixin/mo 65.6 1.3E+02 0.0028 28.7 12.9 98 198-295 5-117 (246)
131 COG3883 Uncharacterized protei 65.6 84 0.0018 30.7 11.0 15 250-264 92-106 (265)
132 PF09789 DUF2353: Uncharacteri 65.4 72 0.0016 31.9 10.8 41 229-269 10-50 (319)
133 PF07058 Myosin_HC-like: Myosi 65.4 57 0.0012 32.6 9.9 43 228-270 7-49 (351)
134 PRK03918 chromosome segregatio 65.0 2E+02 0.0043 31.7 15.2 17 195-211 166-182 (880)
135 KOG4673 Transcription factor T 64.9 2.3E+02 0.0051 31.5 15.3 40 260-299 609-648 (961)
136 PF14193 DUF4315: Domain of un 64.2 40 0.00087 27.2 7.2 45 258-302 17-62 (83)
137 PF09755 DUF2046: Uncharacteri 64.1 1.6E+02 0.0035 29.4 17.6 29 177-206 25-53 (310)
138 TIGR02168 SMC_prok_B chromosom 64.1 2.4E+02 0.0053 31.5 18.1 14 21-34 9-22 (1179)
139 TIGR01069 mutS2 MutS2 family p 64.0 70 0.0015 35.6 11.4 15 199-213 509-523 (771)
140 TIGR02231 conserved hypothetic 63.7 1.3E+02 0.0029 31.3 13.0 15 279-293 150-164 (525)
141 PRK00106 hypothetical protein; 63.5 2.1E+02 0.0046 30.6 16.2 12 310-321 219-230 (535)
142 TIGR00606 rad50 rad50. This fa 63.5 2.6E+02 0.0056 32.9 16.4 17 281-297 902-918 (1311)
143 COG4942 Membrane-bound metallo 63.4 79 0.0017 32.8 10.9 10 232-241 63-72 (420)
144 PF15466 DUF4635: Domain of un 63.2 13 0.00029 32.1 4.5 19 281-299 105-123 (135)
145 COG1382 GimC Prefoldin, chaper 62.8 1E+02 0.0022 26.6 10.5 14 280-293 97-110 (119)
146 PF09403 FadA: Adhesion protei 62.7 1E+02 0.0023 26.7 14.0 33 261-293 87-119 (126)
147 PRK05431 seryl-tRNA synthetase 62.6 55 0.0012 33.6 9.7 66 228-297 35-103 (425)
148 PF08172 CASP_C: CASP C termin 62.0 53 0.0012 31.6 8.9 17 259-275 89-105 (248)
149 PRK09343 prefoldin subunit bet 62.0 99 0.0022 26.3 13.6 41 250-294 72-112 (121)
150 PF04849 HAP1_N: HAP1 N-termin 61.7 1.6E+02 0.0035 29.4 12.3 20 106-125 109-128 (306)
151 TIGR02132 phaR_Bmeg polyhydrox 61.5 1.4E+02 0.003 27.7 15.2 93 185-278 34-136 (189)
152 KOG4674 Uncharacterized conser 61.4 1.6E+02 0.0036 35.9 14.2 33 263-295 805-837 (1822)
153 KOG3091 Nuclear pore complex, 61.4 93 0.002 33.0 11.0 12 186-197 289-300 (508)
154 PF04912 Dynamitin: Dynamitin 60.6 1.9E+02 0.0042 29.1 13.2 41 253-293 347-387 (388)
155 PF00261 Tropomyosin: Tropomyo 60.6 1.5E+02 0.0032 27.8 18.2 13 279-291 202-214 (237)
156 PF07544 Med9: RNA polymerase 60.4 27 0.00058 27.8 5.6 55 227-289 27-81 (83)
157 PRK04778 septation ring format 60.3 2.2E+02 0.0048 30.3 14.1 20 228-247 383-402 (569)
158 PRK00409 recombination and DNA 59.9 1E+02 0.0023 34.2 11.9 16 198-213 513-528 (782)
159 KOG1029 Endocytic adaptor prot 59.7 2.4E+02 0.0053 31.9 14.1 11 192-202 373-383 (1118)
160 PF07106 TBPIP: Tat binding pr 59.2 1.3E+02 0.0027 26.6 10.4 31 179-210 72-102 (169)
161 KOG1850 Myosin-like coiled-coi 59.0 2.1E+02 0.0045 29.0 16.0 74 229-306 251-338 (391)
162 PRK11020 hypothetical protein; 58.9 88 0.0019 26.9 8.6 21 227-247 4-24 (118)
163 PF11068 YlqD: YlqD protein; 58.8 82 0.0018 27.5 8.7 36 280-318 66-101 (131)
164 KOG0288 WD40 repeat protein Ti 58.6 2.4E+02 0.0051 29.5 13.7 41 191-244 31-71 (459)
165 PF04102 SlyX: SlyX; InterPro 58.3 72 0.0016 24.5 7.5 14 282-295 33-46 (69)
166 PF08614 ATG16: Autophagy prot 58.2 1.5E+02 0.0032 27.0 11.3 46 226-271 121-166 (194)
167 PF15369 KIAA1328: Uncharacter 58.0 67 0.0015 32.2 9.0 57 229-292 9-65 (328)
168 KOG2398 Predicted proline-seri 57.8 2.8E+02 0.0062 30.2 16.1 33 179-211 57-89 (611)
169 PF03962 Mnd1: Mnd1 family; I 57.8 1.3E+02 0.0028 27.5 10.4 15 229-243 111-125 (188)
170 PF01920 Prefoldin_2: Prefoldi 57.6 95 0.0021 24.6 10.0 40 249-292 62-101 (106)
171 COG4026 Uncharacterized protei 57.4 1.9E+02 0.0041 28.0 14.0 44 227-270 162-205 (290)
172 TIGR03545 conserved hypothetic 57.4 1.3E+02 0.0028 32.4 11.6 80 191-270 168-258 (555)
173 PF14644 DUF4456: Domain of un 56.3 1.7E+02 0.0036 27.1 15.5 115 179-293 25-160 (208)
174 PF05911 DUF869: Plant protein 56.1 1.8E+02 0.0039 32.6 12.8 38 228-265 624-661 (769)
175 KOG4848 Extracellular matrix-a 55.9 1.8E+02 0.0039 27.4 14.5 61 181-243 101-161 (225)
176 PF14723 SSFA2_C: Sperm-specif 55.8 94 0.002 28.6 8.8 52 247-298 121-176 (179)
177 PF05377 FlaC_arch: Flagella a 55.7 52 0.0011 24.7 6.0 18 281-298 28-45 (55)
178 PRK07352 F0F1 ATP synthase sub 55.7 1.5E+02 0.0033 26.3 14.4 22 192-213 44-65 (174)
179 PRK13729 conjugal transfer pil 55.6 62 0.0013 34.1 8.7 13 278-290 108-120 (475)
180 TIGR00414 serS seryl-tRNA synt 55.4 75 0.0016 32.6 9.3 23 275-297 84-106 (418)
181 PF10211 Ax_dynein_light: Axon 55.3 1.7E+02 0.0037 26.8 15.2 11 281-291 177-187 (189)
182 KOG0994 Extracellular matrix g 55.1 2E+02 0.0044 34.0 12.9 26 274-299 1724-1749(1758)
183 KOG0163 Myosin class VI heavy 54.9 2.7E+02 0.0059 31.6 13.5 13 285-297 1002-1014(1259)
184 KOG4117 Heat shock factor bind 54.7 72 0.0016 24.9 6.7 19 277-295 44-62 (73)
185 KOG0977 Nuclear envelope prote 54.5 3E+02 0.0065 29.7 13.6 9 202-210 89-97 (546)
186 PF13639 zf-RING_2: Ring finge 54.4 2.3 5E-05 29.3 -1.3 38 22-64 2-44 (44)
187 PLN03229 acetyl-coenzyme A car 54.3 1.2E+02 0.0027 33.7 11.0 23 249-271 519-543 (762)
188 KOG0999 Microtubule-associated 54.3 1.6E+02 0.0035 32.0 11.4 28 227-254 106-133 (772)
189 PF14197 Cep57_CLD_2: Centroso 54.2 1E+02 0.0022 23.9 10.1 41 227-267 4-44 (69)
190 PF04111 APG6: Autophagy prote 54.2 2.3E+02 0.0049 28.1 12.1 6 313-318 149-154 (314)
191 PF06810 Phage_GP20: Phage min 54.2 1.4E+02 0.003 26.5 9.7 16 251-266 53-68 (155)
192 PF06005 DUF904: Protein of un 54.2 1E+02 0.0023 24.1 10.6 35 229-263 19-53 (72)
193 PF07106 TBPIP: Tat binding pr 53.8 71 0.0015 28.3 7.8 46 252-297 112-161 (169)
194 KOG2077 JNK/SAPK-associated pr 53.3 1.1E+02 0.0023 33.4 9.9 82 231-318 353-446 (832)
195 KOG0933 Structural maintenance 53.1 1.8E+02 0.0038 33.7 12.0 81 224-304 680-772 (1174)
196 PLN02939 transferase, transfer 53.0 2.2E+02 0.0049 32.7 13.0 47 228-275 324-370 (977)
197 KOG1003 Actin filament-coating 52.8 2E+02 0.0044 27.0 14.8 58 189-246 13-71 (205)
198 smart00502 BBC B-Box C-termina 52.8 1.2E+02 0.0026 24.3 11.8 46 249-297 50-95 (127)
199 PF05701 WEMBL: Weak chloropla 52.7 3.1E+02 0.0066 29.0 16.1 17 195-211 208-224 (522)
200 PLN02678 seryl-tRNA synthetase 52.5 88 0.0019 32.6 9.3 23 275-297 86-108 (448)
201 KOG0239 Kinesin (KAR3 subfamil 52.4 2.2E+02 0.0048 31.3 12.6 21 192-212 187-207 (670)
202 KOG4360 Uncharacterized coiled 52.0 2.6E+02 0.0056 30.1 12.4 24 104-127 107-130 (596)
203 KOG0993 Rab5 GTPase effector R 52.0 3.1E+02 0.0066 28.8 13.1 18 182-199 34-51 (542)
204 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.9 1.5E+02 0.0033 25.3 14.4 60 235-294 59-118 (132)
205 PF09602 PhaP_Bmeg: Polyhydrox 51.8 1.9E+02 0.0041 26.4 12.9 17 281-297 85-101 (165)
206 PF10422 LRS4: Monopolin compl 51.7 14 0.0003 35.6 3.0 68 193-260 9-90 (249)
207 PF01442 Apolipoprotein: Apoli 51.6 1.5E+02 0.0034 25.3 13.8 6 193-198 44-49 (202)
208 PRK04863 mukB cell division pr 51.5 5.2E+02 0.011 31.3 16.5 31 181-211 235-267 (1486)
209 PRK11519 tyrosine kinase; Prov 51.4 3.6E+02 0.0079 29.5 18.7 33 182-214 251-283 (719)
210 PF15450 DUF4631: Domain of un 51.4 2.3E+02 0.0051 30.3 12.1 56 192-247 370-431 (531)
211 PF15619 Lebercilin: Ciliary p 50.7 2.1E+02 0.0045 26.5 13.1 19 280-298 170-188 (194)
212 cd07594 BAR_Endophilin_B The B 50.3 2.3E+02 0.005 26.9 12.5 19 287-305 198-216 (229)
213 PRK01156 chromosome segregatio 50.1 4E+02 0.0088 29.7 16.6 6 160-165 454-459 (895)
214 KOG1899 LAR transmembrane tyro 50.0 3E+02 0.0065 30.4 12.7 20 182-202 121-140 (861)
215 KOG4673 Transcription factor T 49.9 3.6E+02 0.0078 30.2 13.3 21 279-299 493-513 (961)
216 PF03961 DUF342: Protein of un 49.3 1.4E+02 0.003 30.7 10.2 18 281-298 389-406 (451)
217 COG1256 FlgK Flagellar hook-as 49.1 1.5E+02 0.0033 31.7 10.6 33 179-211 60-95 (552)
218 PRK13428 F0F1 ATP synthase sub 49.0 3.3E+02 0.0071 28.3 15.5 20 278-297 109-128 (445)
219 KOG0992 Uncharacterized conser 49.0 2.9E+02 0.0063 29.7 12.2 10 192-201 58-67 (613)
220 PF10458 Val_tRNA-synt_C: Valy 48.9 62 0.0013 24.4 5.7 13 281-293 53-65 (66)
221 KOG2307 Low density lipoprotei 48.7 2.9E+02 0.0062 30.2 12.2 26 281-306 127-152 (705)
222 PLN03188 kinesin-12 family pro 48.7 4.4E+02 0.0096 31.4 14.5 33 193-225 1071-1105(1320)
223 PF07352 Phage_Mu_Gam: Bacteri 48.6 1.2E+02 0.0025 26.5 8.2 32 260-291 25-56 (149)
224 PRK14474 F0F1 ATP synthase sub 48.5 2.5E+02 0.0054 26.8 16.0 20 278-297 113-132 (250)
225 KOG1003 Actin filament-coating 48.5 2.2E+02 0.0049 26.8 10.2 67 227-293 108-177 (205)
226 KOG0980 Actin-binding protein 48.5 4.7E+02 0.01 30.0 17.0 7 100-106 227-233 (980)
227 PF05597 Phasin: Poly(hydroxya 48.5 1.9E+02 0.004 25.3 10.2 9 201-209 39-47 (132)
228 PF03310 Cauli_DNA-bind: Cauli 48.3 1.1E+02 0.0024 26.6 7.6 33 290-324 50-82 (121)
229 PF04012 PspA_IM30: PspA/IM30 48.2 2.2E+02 0.0048 26.0 14.5 40 230-269 93-132 (221)
230 PF04568 IATP: Mitochondrial A 48.1 47 0.001 27.8 5.3 10 281-290 90-99 (100)
231 COG3334 Uncharacterized conser 48.0 1.8E+02 0.004 27.1 9.6 10 262-271 100-109 (192)
232 KOG1962 B-cell receptor-associ 47.8 1.3E+02 0.0027 28.6 8.7 9 282-290 201-209 (216)
233 PF14335 DUF4391: Domain of un 47.7 88 0.0019 29.1 7.7 34 226-259 180-213 (221)
234 TIGR01010 BexC_CtrB_KpsE polys 47.3 2.9E+02 0.0063 27.2 14.9 21 195-215 167-187 (362)
235 PF14282 FlxA: FlxA-like prote 46.7 34 0.00073 28.5 4.3 20 276-295 53-72 (106)
236 PF11802 CENP-K: Centromere-as 46.5 2.7E+02 0.0059 27.3 11.0 49 248-298 130-178 (268)
237 PF06008 Laminin_I: Laminin Do 46.4 2.6E+02 0.0057 26.4 14.7 46 228-273 192-237 (264)
238 KOG3850 Predicted membrane pro 46.2 1.3E+02 0.0029 31.1 9.0 58 237-294 262-319 (455)
239 PF06156 DUF972: Protein of un 46.0 1.1E+02 0.0025 25.6 7.4 42 227-268 14-55 (107)
240 PLN02320 seryl-tRNA synthetase 45.8 1.1E+02 0.0023 32.6 8.7 66 228-297 100-167 (502)
241 KOG4674 Uncharacterized conser 45.7 3.5E+02 0.0076 33.3 13.6 46 228-273 668-713 (1822)
242 PF04642 DUF601: Protein of un 45.7 1.3E+02 0.0028 29.4 8.5 39 256-294 259-298 (311)
243 PF15233 SYCE1: Synaptonemal c 45.6 2.1E+02 0.0046 25.2 12.4 18 281-298 96-113 (134)
244 KOG0612 Rho-associated, coiled 45.5 4.5E+02 0.0098 31.1 13.9 11 245-255 598-608 (1317)
245 TIGR02894 DNA_bind_RsfA transc 45.3 1.4E+02 0.0029 27.2 8.1 47 232-278 101-147 (161)
246 PRK04406 hypothetical protein; 45.2 1.5E+02 0.0033 23.3 8.5 16 232-247 8-23 (75)
247 KOG3859 Septins (P-loop GTPase 45.2 3.1E+02 0.0068 27.6 11.2 42 254-295 357-398 (406)
248 PF09730 BicD: Microtubule-ass 45.2 3.8E+02 0.0083 29.9 13.0 51 246-297 101-151 (717)
249 KOG0250 DNA repair protein RAD 45.1 5.6E+02 0.012 29.9 15.2 18 282-299 444-461 (1074)
250 TIGR02338 gimC_beta prefoldin, 45.1 1.8E+02 0.0038 24.1 12.6 39 252-294 70-108 (110)
251 KOG0972 Huntingtin interacting 45.1 3.4E+02 0.0073 27.3 11.5 26 64-89 84-109 (384)
252 PF07889 DUF1664: Protein of u 45.0 2.1E+02 0.0045 24.9 9.9 19 249-267 82-100 (126)
253 TIGR03321 alt_F1F0_F0_B altern 44.8 2.7E+02 0.0059 26.2 16.0 21 192-212 30-50 (246)
254 KOG0994 Extracellular matrix g 44.7 6.2E+02 0.013 30.3 15.3 17 199-215 1620-1636(1758)
255 PF08614 ATG16: Autophagy prot 44.5 2.4E+02 0.0053 25.5 10.1 17 278-294 162-178 (194)
256 PF02388 FemAB: FemAB family; 44.5 1.2E+02 0.0026 30.9 8.7 28 186-213 197-230 (406)
257 PF10046 BLOC1_2: Biogenesis o 44.2 1.8E+02 0.0038 23.8 11.0 13 281-293 66-78 (99)
258 PF07851 TMPIT: TMPIT-like pro 44.1 2.3E+02 0.0049 28.6 10.3 11 282-292 69-79 (330)
259 PRK11281 hypothetical protein; 44.0 5.1E+02 0.011 30.4 14.4 13 282-294 354-366 (1113)
260 PF15066 CAGE1: Cancer-associa 44.0 4.2E+02 0.0092 28.1 13.7 23 283-305 435-457 (527)
261 PF08232 Striatin: Striatin fa 43.8 90 0.002 27.1 6.7 37 231-267 28-64 (134)
262 PRK06568 F0F1 ATP synthase sub 43.5 2.4E+02 0.0052 25.2 15.8 24 276-299 110-133 (154)
263 PF10234 Cluap1: Clusterin-ass 43.5 3.3E+02 0.0071 26.7 11.6 9 129-137 74-82 (267)
264 COG4942 Membrane-bound metallo 43.2 4.1E+02 0.0089 27.7 16.1 16 179-194 38-53 (420)
265 PF06810 Phage_GP20: Phage min 43.1 2.4E+02 0.0052 25.1 11.8 13 281-293 116-128 (155)
266 KOG1899 LAR transmembrane tyro 42.9 4E+02 0.0087 29.5 12.3 31 179-211 157-187 (861)
267 PRK10929 putative mechanosensi 42.7 5.4E+02 0.012 30.2 14.3 13 282-294 334-346 (1109)
268 PF04899 MbeD_MobD: MbeD/MobD 42.4 1.7E+02 0.0036 23.0 7.8 23 249-271 14-36 (70)
269 PRK10361 DNA recombination pro 42.4 4.4E+02 0.0096 27.9 14.2 19 280-298 139-157 (475)
270 KOG1029 Endocytic adaptor prot 42.1 4.8E+02 0.01 29.7 12.9 25 282-306 431-456 (1118)
271 COG3074 Uncharacterized protei 41.6 1.8E+02 0.0039 23.1 10.7 51 240-294 23-73 (79)
272 KOG1853 LIS1-interacting prote 41.6 3.6E+02 0.0078 26.6 13.7 25 259-283 108-132 (333)
273 COG4477 EzrA Negative regulato 41.6 4.9E+02 0.011 28.1 13.8 24 279-302 452-475 (570)
274 KOG2391 Vacuolar sorting prote 41.5 2.2E+02 0.0048 28.9 9.7 29 239-267 250-278 (365)
275 PRK00888 ftsB cell division pr 41.5 1.1E+02 0.0024 25.5 6.6 7 312-318 78-84 (105)
276 PF14073 Cep57_CLD: Centrosome 41.4 2.9E+02 0.0063 25.5 12.4 22 252-273 130-151 (178)
277 PF10079 DUF2317: Uncharacteri 41.2 2.4E+02 0.0051 30.2 10.5 92 178-279 390-482 (542)
278 smart00502 BBC B-Box C-termina 41.0 1.9E+02 0.004 23.1 14.1 19 194-212 10-28 (127)
279 PRK13455 F0F1 ATP synthase sub 40.9 2.7E+02 0.0058 25.0 14.4 21 277-297 134-154 (184)
280 PRK10698 phage shock protein P 40.9 3.1E+02 0.0067 25.7 14.7 40 233-272 97-136 (222)
281 PF15397 DUF4618: Domain of un 40.7 3.5E+02 0.0077 26.3 11.9 12 282-293 121-132 (258)
282 PF10482 CtIP_N: Tumour-suppre 40.6 2.4E+02 0.0052 24.4 11.6 44 229-272 15-65 (120)
283 TIGR01554 major_cap_HK97 phage 40.6 1.5E+02 0.0032 29.5 8.6 7 313-319 114-120 (378)
284 PRK11546 zraP zinc resistance 40.0 2.6E+02 0.0056 24.9 9.0 24 276-299 91-114 (143)
285 COG5185 HEC1 Protein involved 39.7 2.5E+02 0.0054 30.0 10.0 11 126-136 233-243 (622)
286 KOG0612 Rho-associated, coiled 39.6 7.2E+02 0.016 29.6 14.7 28 228-255 508-535 (1317)
287 PF06428 Sec2p: GDP/GTP exchan 39.5 53 0.0011 27.4 4.3 22 276-297 60-81 (100)
288 PF07889 DUF1664: Protein of u 39.5 2.6E+02 0.0056 24.3 10.8 10 199-208 62-71 (126)
289 TIGR02231 conserved hypothetic 39.4 2.8E+02 0.006 29.0 10.7 23 229-251 86-108 (525)
290 PF13094 CENP-Q: CENP-Q, a CEN 39.4 2.5E+02 0.0053 24.6 8.9 12 280-291 121-132 (160)
291 COG4717 Uncharacterized conser 39.4 6.5E+02 0.014 28.9 14.0 21 194-214 567-587 (984)
292 KOG4438 Centromere-associated 39.3 4.8E+02 0.01 27.4 13.8 10 190-199 144-153 (446)
293 PRK13729 conjugal transfer pil 38.7 1.6E+02 0.0034 31.1 8.6 15 229-243 77-91 (475)
294 KOG4403 Cell surface glycoprot 38.4 2.7E+02 0.0059 29.4 10.0 15 134-148 153-167 (575)
295 TIGR03185 DNA_S_dndD DNA sulfu 38.4 5.4E+02 0.012 27.8 17.8 15 228-242 428-442 (650)
296 KOG4005 Transcription factor X 38.3 2.2E+02 0.0047 27.7 8.7 58 203-261 66-123 (292)
297 cd07600 BAR_Gvp36 The Bin/Amph 38.3 3.7E+02 0.0079 25.8 12.3 24 282-305 206-229 (242)
298 KOG4722 Zn-finger protein [Gen 38.0 5.1E+02 0.011 27.4 12.9 28 196-223 289-316 (672)
299 PF14916 CCDC92: Coiled-coil d 38.0 70 0.0015 24.4 4.4 33 265-297 12-44 (60)
300 KOG1937 Uncharacterized conser 37.5 5.3E+02 0.011 27.4 14.6 108 182-291 244-372 (521)
301 PF02185 HR1: Hr1 repeat; Int 37.5 1.8E+02 0.0039 22.0 7.1 22 276-297 42-63 (70)
302 PRK04325 hypothetical protein; 37.4 2E+02 0.0043 22.5 8.0 24 233-256 7-34 (74)
303 PF14282 FlxA: FlxA-like prote 37.4 1.8E+02 0.004 24.1 7.3 21 278-298 48-68 (106)
304 PF09304 Cortex-I_coil: Cortex 37.3 2.6E+02 0.0057 23.8 11.3 19 281-299 58-76 (107)
305 KOG2196 Nuclear porin [Nuclear 37.2 4E+02 0.0087 25.9 13.3 29 180-212 75-103 (254)
306 PF06548 Kinesin-related: Kine 37.2 5.3E+02 0.011 27.3 14.6 53 189-241 297-357 (488)
307 KOG0962 DNA repair protein RAD 37.0 5E+02 0.011 30.9 12.8 71 226-300 1039-1114(1294)
308 PF14817 HAUS5: HAUS augmin-li 36.9 5.7E+02 0.012 28.1 12.7 16 229-244 359-374 (632)
309 KOG0809 SNARE protein TLG2/Syn 36.7 4.4E+02 0.0096 26.3 13.8 38 273-318 210-248 (305)
310 PF09738 DUF2051: Double stran 36.7 4.4E+02 0.0094 26.2 12.7 22 281-302 147-168 (302)
311 KOG3362 Predicted BBOX Zn-fing 36.7 14 0.0003 33.0 0.5 32 71-103 109-141 (156)
312 TIGR01005 eps_transp_fam exopo 36.5 6E+02 0.013 27.7 15.1 15 199-213 195-209 (754)
313 KOG2008 BTK-associated SH3-dom 36.5 4.7E+02 0.01 26.6 15.6 22 190-211 59-80 (426)
314 PF02388 FemAB: FemAB family; 36.4 2.1E+02 0.0045 29.1 9.0 23 106-128 87-109 (406)
315 KOG0243 Kinesin-like protein [ 36.4 5.6E+02 0.012 29.8 12.9 23 225-247 445-467 (1041)
316 PF05852 DUF848: Gammaherpesvi 36.3 3.2E+02 0.0069 24.5 10.0 20 279-298 94-113 (146)
317 PF07464 ApoLp-III: Apolipopho 36.3 1.6E+02 0.0035 26.4 7.2 24 248-271 91-114 (155)
318 PF02601 Exonuc_VII_L: Exonucl 36.3 4.1E+02 0.0088 25.7 15.8 24 65-88 14-37 (319)
319 COG1842 PspA Phage shock prote 36.2 3.8E+02 0.0083 25.4 13.6 47 225-271 89-135 (225)
320 PHA03332 membrane glycoprotein 36.2 4.1E+02 0.0088 31.2 11.6 63 227-289 897-963 (1328)
321 PRK14475 F0F1 ATP synthase sub 36.2 3.1E+02 0.0066 24.3 14.4 21 277-297 117-137 (167)
322 CHL00118 atpG ATP synthase CF0 36.0 3E+02 0.0064 24.1 15.9 20 278-297 130-149 (156)
323 TIGR01005 eps_transp_fam exopo 35.9 6.1E+02 0.013 27.7 17.4 12 179-190 237-248 (754)
324 PF04880 NUDE_C: NUDE protein, 35.9 64 0.0014 29.3 4.6 27 279-305 29-55 (166)
325 COG1842 PspA Phage shock prote 35.9 3.9E+02 0.0084 25.3 13.5 14 281-294 127-140 (225)
326 PF09744 Jnk-SapK_ap_N: JNK_SA 35.5 3.3E+02 0.0072 24.5 13.7 18 228-245 89-106 (158)
327 PF00804 Syntaxin: Syntaxin; 35.4 2.1E+02 0.0045 22.1 8.3 18 277-294 86-103 (103)
328 PF05700 BCAS2: Breast carcino 35.1 3.8E+02 0.0082 25.0 11.8 69 222-291 144-213 (221)
329 PF05529 Bap31: B-cell recepto 34.8 3.3E+02 0.0071 24.5 9.2 17 189-205 91-107 (192)
330 PF03978 Borrelia_REV: Borreli 34.6 3.5E+02 0.0077 24.5 9.2 57 233-293 52-110 (160)
331 PF04949 Transcrip_act: Transc 34.5 3.5E+02 0.0076 24.5 11.0 17 282-298 127-143 (159)
332 PF11101 DUF2884: Protein of u 34.5 3.8E+02 0.0081 25.2 9.8 29 261-290 187-215 (229)
333 KOG0579 Ste20-like serine/thre 34.5 7.3E+02 0.016 28.1 13.0 84 173-265 1062-1147(1187)
334 KOG3915 Transcription regulato 34.3 3E+02 0.0065 29.3 9.6 21 68-88 355-375 (641)
335 PRK02793 phi X174 lysis protei 34.1 2.2E+02 0.0049 22.1 7.9 12 282-293 37-48 (72)
336 PRK00286 xseA exodeoxyribonucl 33.6 5.3E+02 0.011 26.2 15.2 25 65-89 135-159 (438)
337 PF09416 UPF1_Zn_bind: RNA hel 33.5 18 0.00039 32.4 0.7 69 82-150 2-88 (152)
338 PLN02939 transferase, transfer 33.2 8.2E+02 0.018 28.4 14.0 17 226-242 298-314 (977)
339 PF10883 DUF2681: Protein of u 33.2 2.6E+02 0.0057 22.8 7.3 20 250-269 38-57 (87)
340 PF05130 FlgN: FlgN protein; 33.2 2.7E+02 0.0058 22.7 10.5 24 192-215 6-29 (143)
341 PF12777 MT: Microtubule-bindi 33.1 4.9E+02 0.011 25.8 11.1 10 282-291 299-308 (344)
342 PRK05729 valS valyl-tRNA synth 32.9 1.2E+02 0.0026 34.0 7.1 16 229-244 812-827 (874)
343 cd07617 BAR_Endophilin_B2 The 32.9 4.4E+02 0.0095 25.1 12.2 24 282-305 183-207 (220)
344 PF13815 Dzip-like_N: Iguana/D 32.8 2.8E+02 0.0062 23.2 7.9 20 180-199 62-81 (118)
345 COG0466 Lon ATP-dependent Lon 32.6 2.1E+02 0.0046 32.0 8.6 57 248-305 216-274 (782)
346 PRK02119 hypothetical protein; 32.6 2.4E+02 0.0052 22.0 8.2 24 233-256 7-34 (73)
347 PRK00295 hypothetical protein; 32.5 2.3E+02 0.005 21.8 7.8 8 249-256 23-30 (68)
348 COG2959 HemX Uncharacterized e 32.4 4.1E+02 0.0089 27.4 10.0 20 275-294 105-124 (391)
349 KOG0018 Structural maintenance 32.3 8.3E+02 0.018 28.7 13.2 21 193-213 776-796 (1141)
350 cd00890 Prefoldin Prefoldin is 31.8 2.9E+02 0.0062 22.6 12.9 18 195-212 3-20 (129)
351 PF14369 zf-RING_3: zinc-finge 31.7 35 0.00076 23.0 1.7 17 124-140 1-17 (35)
352 PHA03332 membrane glycoprotein 31.6 3.9E+02 0.0083 31.3 10.5 56 245-300 898-956 (1328)
353 KOG4360 Uncharacterized coiled 31.6 6.9E+02 0.015 27.0 14.5 11 118-128 101-111 (596)
354 COG1315 Uncharacterized conser 31.4 1.3E+02 0.0029 32.1 6.6 32 226-257 408-439 (543)
355 PF05010 TACC: Transforming ac 31.2 4.5E+02 0.0097 24.7 16.1 17 180-196 41-57 (207)
356 KOG2341 TATA box binding prote 31.1 1.3E+02 0.0028 32.4 6.6 62 235-299 436-497 (563)
357 PF10174 Cast: RIM-binding pro 31.1 8.1E+02 0.018 27.6 15.3 20 193-212 314-333 (775)
358 PRK06569 F0F1 ATP synthase sub 31.1 3.9E+02 0.0085 24.0 15.9 19 284-304 124-142 (155)
359 PRK05759 F0F1 ATP synthase sub 31.1 3.4E+02 0.0074 23.3 14.4 20 278-297 112-131 (156)
360 PRK06231 F0F1 ATP synthase sub 30.9 4.3E+02 0.0094 24.4 10.3 22 276-297 154-175 (205)
361 PHA03161 hypothetical protein; 30.7 4E+02 0.0087 24.0 9.8 7 282-288 97-103 (150)
362 PRK12705 hypothetical protein; 30.5 6.9E+02 0.015 26.7 15.5 12 310-321 192-203 (508)
363 PF04136 Sec34: Sec34-like fam 30.4 3.9E+02 0.0084 23.7 10.5 26 281-306 95-120 (157)
364 PF12761 End3: Actin cytoskele 30.4 4E+02 0.0087 24.9 9.0 21 281-301 167-187 (195)
365 PF13863 DUF4200: Domain of un 30.2 3.1E+02 0.0068 22.6 12.0 24 276-299 90-113 (126)
366 PF06785 UPF0242: Uncharacteri 30.2 6.1E+02 0.013 25.9 11.9 36 244-279 136-171 (401)
367 PF02841 GBP_C: Guanylate-bind 29.8 5.2E+02 0.011 25.0 13.5 14 280-293 283-296 (297)
368 PF10828 DUF2570: Protein of u 29.7 3.3E+02 0.0071 22.6 10.3 7 286-292 79-85 (110)
369 PF15254 CCDC14: Coiled-coil d 29.7 6E+02 0.013 28.7 11.4 24 233-256 439-462 (861)
370 KOG0709 CREB/ATF family transc 29.5 1.5E+02 0.0032 31.3 6.5 26 278-303 290-315 (472)
371 PRK08475 F0F1 ATP synthase sub 29.4 4.1E+02 0.0088 23.6 15.5 22 192-213 47-68 (167)
372 PF15294 Leu_zip: Leucine zipp 29.4 3.6E+02 0.0078 26.6 8.9 15 189-203 61-75 (278)
373 PF08826 DMPK_coil: DMPK coile 29.3 2.6E+02 0.0056 21.3 9.5 11 281-291 46-56 (61)
374 PF04375 HemX: HemX; InterPro 29.2 5.3E+02 0.011 26.0 10.4 7 185-191 44-50 (372)
375 PF14389 Lzipper-MIP1: Leucine 29.1 3.1E+02 0.0066 22.1 7.8 65 229-297 9-84 (88)
376 PF04977 DivIC: Septum formati 29.1 2.3E+02 0.0049 21.2 6.1 12 282-293 39-50 (80)
377 PF00435 Spectrin: Spectrin re 29.1 2.5E+02 0.0054 21.0 10.6 60 228-287 41-104 (105)
378 PRK13453 F0F1 ATP synthase sub 29.0 4.2E+02 0.009 23.6 15.2 21 277-297 125-145 (173)
379 PF07111 HCR: Alpha helical co 28.9 8.6E+02 0.019 27.2 13.7 14 192-205 561-574 (739)
380 TIGR00237 xseA exodeoxyribonuc 28.8 6.6E+02 0.014 25.9 15.7 24 65-88 129-152 (432)
381 PF05266 DUF724: Protein of un 28.7 4.7E+02 0.01 24.1 10.3 69 225-293 100-171 (190)
382 PF09798 LCD1: DNA damage chec 28.7 1.7E+02 0.0036 32.2 7.1 30 225-254 30-59 (654)
383 PF07139 DUF1387: Protein of u 28.5 3.7E+02 0.008 26.9 8.8 24 268-291 230-253 (302)
384 KOG1161 Protein involved in va 28.5 2.9E+02 0.0063 27.6 8.2 43 257-299 67-118 (310)
385 KOG0980 Actin-binding protein 28.4 9.6E+02 0.021 27.6 14.9 8 197-204 354-361 (980)
386 KOG0982 Centrosomal protein Nu 28.3 7.3E+02 0.016 26.2 12.8 17 196-212 220-236 (502)
387 PRK14472 F0F1 ATP synthase sub 28.3 4.2E+02 0.0092 23.5 14.4 20 278-297 126-145 (175)
388 TIGR03017 EpsF chain length de 28.2 6.2E+02 0.014 25.4 14.6 127 167-294 140-302 (444)
389 cd07651 F-BAR_PombeCdc15_like 28.2 4.9E+02 0.011 24.1 14.6 17 180-196 71-87 (236)
390 PLN02943 aminoacyl-tRNA ligase 28.1 1.5E+02 0.0033 33.8 7.0 15 230-244 891-905 (958)
391 PF04871 Uso1_p115_C: Uso1 / p 28.0 4E+02 0.0087 23.1 12.1 18 284-301 80-97 (136)
392 PF07798 DUF1640: Protein of u 27.9 4.4E+02 0.0096 23.5 16.2 21 178-198 18-38 (177)
393 PF10498 IFT57: Intra-flagella 27.7 6.6E+02 0.014 25.5 15.9 25 71-95 83-107 (359)
394 PF05531 NPV_P10: Nucleopolyhe 27.5 2.4E+02 0.0052 22.5 6.0 30 225-254 15-44 (75)
395 PF12808 Mto2_bdg: Micro-tubul 27.5 2.5E+02 0.0054 20.8 5.7 18 281-298 29-46 (52)
396 KOG0993 Rab5 GTPase effector R 27.4 7.5E+02 0.016 26.1 12.4 49 230-278 136-184 (542)
397 PRK00888 ftsB cell division pr 27.3 3.6E+02 0.0078 22.4 7.4 26 231-256 30-55 (105)
398 PF15294 Leu_zip: Leucine zipp 27.3 6.1E+02 0.013 25.0 11.2 33 266-298 193-225 (278)
399 COG4372 Uncharacterized protei 27.1 7.4E+02 0.016 25.9 14.4 36 227-262 143-178 (499)
400 PF10779 XhlA: Haemolysin XhlA 27.1 2.9E+02 0.0062 21.1 7.2 8 231-238 9-16 (71)
401 COG0172 SerS Seryl-tRNA synthe 27.1 3.7E+02 0.0079 28.1 8.9 20 278-297 86-105 (429)
402 KOG0963 Transcription factor/C 27.0 8.7E+02 0.019 26.7 15.0 116 181-304 239-354 (629)
403 KOG0241 Kinesin-like protein [ 26.9 4.4E+02 0.0096 30.8 9.9 18 113-130 219-236 (1714)
404 PRK13169 DNA replication intia 26.9 3.4E+02 0.0074 23.0 7.3 39 229-267 16-54 (110)
405 PF14772 NYD-SP28: Sperm tail 26.8 3.5E+02 0.0075 22.0 11.7 19 273-291 68-86 (104)
406 KOG4083 Head-elevated expressi 26.8 4.2E+02 0.0092 24.7 8.3 35 245-279 90-124 (192)
407 PF10243 MIP-T3: Microtubule-b 26.6 22 0.00047 37.6 0.0 106 188-293 393-507 (539)
408 PF15397 DUF4618: Domain of un 26.5 6.1E+02 0.013 24.7 16.1 39 264-302 121-159 (258)
409 PF14942 Muted: Organelle biog 26.5 4.6E+02 0.0099 23.2 13.0 43 251-293 95-141 (145)
410 PF05278 PEARLI-4: Arabidopsis 26.5 6.3E+02 0.014 24.8 12.9 21 45-65 4-24 (269)
411 KOG4657 Uncharacterized conser 26.5 5.9E+02 0.013 24.6 15.3 6 179-184 29-34 (246)
412 PRK13461 F0F1 ATP synthase sub 26.5 4.3E+02 0.0093 22.9 14.9 21 277-297 112-132 (159)
413 PF10779 XhlA: Haemolysin XhlA 26.4 3E+02 0.0064 21.0 8.0 9 233-241 4-12 (71)
414 PF01576 Myosin_tail_1: Myosin 26.4 22 0.00047 39.9 0.0 28 187-215 103-130 (859)
415 PF15290 Syntaphilin: Golgi-lo 26.3 6E+02 0.013 25.3 9.7 14 285-298 153-166 (305)
416 PRK09173 F0F1 ATP synthase sub 26.2 4.3E+02 0.0094 22.9 15.4 21 277-297 109-129 (159)
417 PF00846 Hanta_nucleocap: Hant 26.2 5.9E+02 0.013 26.5 10.0 26 277-305 52-77 (428)
418 PTZ00419 valyl-tRNA synthetase 26.1 1.8E+02 0.0039 33.2 7.2 18 228-245 929-946 (995)
419 KOG3809 Microtubule-binding pr 26.1 8.2E+02 0.018 26.0 12.1 47 227-273 478-531 (583)
420 PRK04863 mukB cell division pr 26.1 1.3E+03 0.027 28.2 18.1 11 73-83 126-136 (1486)
421 PRK06945 flgK flagellar hook-a 26.0 5.7E+02 0.012 28.0 10.6 29 182-210 61-92 (651)
422 TIGR00634 recN DNA repair prot 25.7 7.8E+02 0.017 26.0 11.4 8 284-291 378-385 (563)
423 KOG4466 Component of histone d 25.5 6.7E+02 0.015 24.9 12.1 13 203-215 40-52 (291)
424 PF10146 zf-C4H2: Zinc finger- 25.3 6E+02 0.013 24.2 10.9 69 224-293 4-72 (230)
425 PF05276 SH3BP5: SH3 domain-bi 25.2 6.2E+02 0.013 24.3 13.2 18 192-209 55-72 (239)
426 smart00787 Spc7 Spc7 kinetocho 25.2 6.8E+02 0.015 24.8 16.9 12 282-293 247-258 (312)
427 KOG2701 Uncharacterized conser 25.1 9.3E+02 0.02 26.4 12.8 30 182-211 250-279 (608)
428 PTZ00464 SNF-7-like protein; P 25.0 5.8E+02 0.013 23.9 14.9 17 281-297 124-140 (211)
429 PF10234 Cluap1: Clusterin-ass 25.0 6.6E+02 0.014 24.6 10.1 20 222-241 163-182 (267)
430 PF12329 TMF_DNA_bd: TATA elem 24.9 3.4E+02 0.0073 21.2 10.1 9 232-240 16-24 (74)
431 PRK13454 F0F1 ATP synthase sub 24.8 5.1E+02 0.011 23.3 15.0 21 277-297 138-158 (181)
432 CHL00019 atpF ATP synthase CF0 24.8 5.1E+02 0.011 23.2 15.8 20 278-297 132-151 (184)
433 PF05766 NinG: Bacteriophage L 24.7 75 0.0016 29.5 3.2 51 85-135 80-133 (189)
434 PF14073 Cep57_CLD: Centrosome 24.6 5.6E+02 0.012 23.7 12.0 17 196-212 76-92 (178)
435 PF12999 PRKCSH-like: Glucosid 24.6 5.6E+02 0.012 23.6 9.6 28 177-204 115-142 (176)
436 PF05667 DUF812: Protein of un 24.5 8E+02 0.017 26.7 11.3 41 263-305 408-448 (594)
437 PRK06975 bifunctional uroporph 24.5 6.5E+02 0.014 27.5 10.7 7 115-121 228-234 (656)
438 PF13094 CENP-Q: CENP-Q, a CEN 24.5 4.8E+02 0.01 22.8 9.3 7 232-238 45-51 (160)
439 PF09302 XLF: XLF (XRCC4-like 24.5 1.8E+02 0.0038 25.6 5.5 41 248-292 131-171 (171)
440 KOG3863 bZIP transcription fac 24.3 9E+02 0.02 26.5 11.4 15 312-326 577-591 (604)
441 PRK10869 recombination and rep 24.2 6.6E+02 0.014 26.8 10.5 80 205-293 306-386 (553)
442 smart00503 SynN Syntaxin N-ter 24.1 3.7E+02 0.0081 21.4 9.1 26 278-303 86-112 (117)
443 PRK07353 F0F1 ATP synthase sub 23.9 4.4E+02 0.0095 22.2 15.2 19 278-296 113-131 (140)
444 PRK14473 F0F1 ATP synthase sub 23.9 4.9E+02 0.011 22.7 15.7 21 277-297 115-135 (164)
445 PF07047 OPA3: Optic atrophy 3 23.8 1.7E+02 0.0036 25.4 5.0 23 279-301 110-132 (134)
446 PF08172 CASP_C: CASP C termin 23.6 2.1E+02 0.0046 27.5 6.1 17 198-214 86-102 (248)
447 PRK12705 hypothetical protein; 23.5 9.2E+02 0.02 25.7 16.6 9 195-203 24-32 (508)
448 PRK13460 F0F1 ATP synthase sub 23.4 5.2E+02 0.011 22.9 15.1 20 278-297 124-143 (173)
449 PRK06665 flgK flagellar hook-a 23.3 6.1E+02 0.013 27.5 10.2 26 182-207 71-99 (627)
450 PF09340 NuA4: Histone acetylt 23.2 2.3E+02 0.005 22.5 5.3 31 279-320 14-45 (80)
451 KOG2129 Uncharacterized conser 23.0 9.1E+02 0.02 25.5 15.1 11 199-209 155-165 (552)
452 KOG0742 AAA+-type ATPase [Post 23.0 9.5E+02 0.021 25.7 15.8 61 200-260 116-184 (630)
453 PRK00736 hypothetical protein; 22.7 3.6E+02 0.0077 20.7 7.8 9 248-256 22-30 (68)
454 PRK00846 hypothetical protein; 22.6 4E+02 0.0087 21.3 8.8 26 231-256 9-38 (77)
455 KOG2026 Spindle pole body prot 22.6 70 0.0015 33.0 2.7 61 83-151 44-104 (442)
456 PRK14471 F0F1 ATP synthase sub 22.5 5.2E+02 0.011 22.5 15.5 20 278-297 116-135 (164)
457 TIGR01144 ATP_synt_b ATP synth 22.4 4.8E+02 0.011 22.1 15.5 20 278-297 103-122 (147)
458 PF08657 DASH_Spc34: DASH comp 22.2 3.7E+02 0.0081 26.0 7.5 17 277-293 242-258 (259)
459 KOG2751 Beclin-like protein [S 22.1 9.4E+02 0.02 25.3 14.4 28 117-144 69-96 (447)
460 PF12004 DUF3498: Domain of un 22.0 30 0.00065 36.6 0.0 23 260-282 412-434 (495)
461 COG2900 SlyX Uncharacterized p 22.0 4.1E+02 0.0089 21.1 7.0 7 248-254 25-31 (72)
462 PF09006 Surfac_D-trimer: Lung 22.0 1.8E+02 0.0038 21.2 3.9 29 279-307 4-32 (46)
463 PF04859 DUF641: Plant protein 21.9 5.4E+02 0.012 22.5 9.9 26 270-295 97-122 (131)
464 PF01806 Paramyxo_P: Paramyxov 21.9 5.2E+02 0.011 24.6 8.0 37 225-261 63-99 (248)
465 PF02403 Seryl_tRNA_N: Seryl-t 21.9 4.3E+02 0.0093 21.3 8.8 11 260-270 78-88 (108)
466 KOG4643 Uncharacterized coiled 21.8 1.3E+03 0.029 27.0 16.4 20 179-198 415-434 (1195)
467 PF13935 Ead_Ea22: Ead/Ea22-li 21.6 5.3E+02 0.012 22.3 8.9 20 251-270 92-111 (139)
468 PF10481 CENP-F_N: Cenp-F N-te 21.5 6.1E+02 0.013 25.2 8.7 66 226-291 16-81 (307)
469 PF05622 HOOK: HOOK protein; 21.5 31 0.00067 37.6 0.0 13 42-54 75-87 (713)
470 PRK10929 putative mechanosensi 21.4 1.4E+03 0.03 27.0 13.8 18 196-213 178-195 (1109)
471 PRK05431 seryl-tRNA synthetase 21.4 5.2E+02 0.011 26.6 8.9 19 277-295 76-94 (425)
472 PF02183 HALZ: Homeobox associ 21.3 3.1E+02 0.0068 19.5 5.7 42 224-265 1-42 (45)
473 PF08826 DMPK_coil: DMPK coile 21.3 3.8E+02 0.0082 20.4 8.2 50 222-271 12-61 (61)
474 KOG0978 E3 ubiquitin ligase in 21.2 1.2E+03 0.025 26.1 15.6 109 179-293 418-536 (698)
475 PF07028 DUF1319: Protein of u 21.2 5.1E+02 0.011 22.7 7.3 67 222-291 54-120 (126)
476 PLN03229 acetyl-coenzyme A car 21.2 9.9E+02 0.022 26.9 11.2 116 176-291 508-659 (762)
477 PF10498 IFT57: Intra-flagella 21.2 8.7E+02 0.019 24.6 13.4 89 200-302 219-315 (359)
478 PF06818 Fez1: Fez1; InterPro 21.1 7E+02 0.015 23.5 11.2 92 191-293 14-106 (202)
479 smart00435 TOPEUc DNA Topoisom 20.9 4.6E+02 0.01 27.1 8.2 66 226-292 282-361 (391)
480 cd00176 SPEC Spectrin repeats, 20.9 5.2E+02 0.011 21.9 11.1 78 224-301 36-117 (213)
481 KOG3312 Predicted membrane pro 20.8 1.6E+02 0.0034 26.8 4.2 54 227-296 33-86 (186)
482 KOG4001 Axonemal dynein light 20.8 7.5E+02 0.016 23.7 9.9 72 228-299 178-253 (259)
483 TIGR00570 cdk7 CDK-activating 20.8 8.4E+02 0.018 24.4 9.7 63 230-292 115-179 (309)
484 TIGR00763 lon ATP-dependent pr 20.7 3.9E+02 0.0083 29.6 8.2 83 222-305 187-271 (775)
485 TIGR02680 conserved hypothetic 20.7 1.5E+03 0.032 27.1 14.7 99 195-293 231-345 (1353)
486 PRK15422 septal ring assembly 20.7 4.6E+02 0.01 21.2 10.1 66 225-294 8-73 (79)
487 PRK05771 V-type ATP synthase s 20.6 9.5E+02 0.021 25.9 11.0 90 200-293 15-126 (646)
488 PF05377 FlaC_arch: Flagella a 20.5 3.8E+02 0.0082 20.2 6.6 45 236-280 1-45 (55)
489 PF12777 MT: Microtubule-bindi 20.5 6.2E+02 0.013 25.1 9.0 81 194-276 231-311 (344)
490 COG3765 WzzB Chain length dete 20.5 9.2E+02 0.02 24.6 11.1 101 179-291 101-227 (347)
491 KOG0979 Structural maintenance 20.4 1.4E+03 0.03 26.7 14.2 102 196-297 627-733 (1072)
492 PRK14011 prefoldin subunit alp 20.4 6E+02 0.013 22.4 8.1 55 215-273 83-137 (144)
493 COG5613 Uncharacterized conser 20.4 9.5E+02 0.021 24.7 10.9 82 205-286 307-388 (400)
494 PRK13428 F0F1 ATP synthase sub 20.3 7E+02 0.015 25.8 9.6 60 233-292 30-89 (445)
495 TIGR00414 serS seryl-tRNA synt 20.3 6.6E+02 0.014 25.8 9.3 59 235-293 30-95 (418)
496 PF12126 DUF3583: Protein of u 20.3 8.8E+02 0.019 24.3 11.0 105 193-297 26-151 (324)
497 PRK08724 fliD flagellar cappin 20.2 4.8E+02 0.01 28.9 8.6 58 240-297 615-672 (673)
498 PRK10803 tol-pal system protei 20.2 7.7E+02 0.017 23.6 9.7 65 204-277 39-103 (263)
499 TIGR02338 gimC_beta prefoldin, 20.2 5E+02 0.011 21.4 10.2 70 224-293 13-100 (110)
500 PF15372 DUF4600: Domain of un 20.1 6E+02 0.013 22.3 7.9 54 249-302 15-86 (129)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=100.00 E-value=1.7e-77 Score=589.82 Aligned_cols=318 Identities=42% Similarity=0.680 Sum_probs=274.2
Q ss_pred CeeEEeec---cCCCCCcCc-ccccccccccCc---cccccCCCCeeEeeeeeEEeccCCCCCCCCCCCCCcccceeccc
Q 019425 1 MFVLRVHS---VDDNHPITI-EEAGFCTVSSTA---TRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAV 73 (341)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~---~~~~~sgnp~v~~t~Gi~Hlf~~~~~~s~~~pv~r~~~lcilav 73 (341)
||+.++|+ ++++.++++ .+..|.+..+.. ++.|+||||.|++|+|||||||.+..+++..+. +++|||||||
T Consensus 4 v~~e~~~~~~~~~ssr~i~~r~~d~g~~~~s~~~~~~~~~~sgnp~ve~t~GiiHLyk~n~~~s~~~~~-~~~mLcilaV 82 (493)
T KOG0804|consen 4 VIIESLVSEPLVDSSREISGRSEDSGFTSASERLPSQIKYSSGNPSVEETHGIIHLYKKNSHSSLKNAS-SSTMLCILAV 82 (493)
T ss_pred chhhhcccCcccccccccCCcccccccchhhhccCCcccccCCCCceeeeceeEEEEecCcccccccCC-CCcEEEEEec
Confidence 56788887 999999999 332244444433 445999999999999999999999998888875 4999999999
Q ss_pred CCCCChhhhcccccccccceeeeeee------------------------------------------------------
Q 019425 74 PNYLSSDEFVRFCGSHIDHVEELIFI------------------------------------------------------ 99 (341)
Q Consensus 74 P~~~t~~dlc~fC~~~~e~w~cL~c~------------------------------------------------------ 99 (341)
|+|||++|+|+||+++...|.+++++
T Consensus 83 P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s~ 162 (493)
T KOG0804|consen 83 PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTESE 162 (493)
T ss_pred cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEecc
Confidence 99999999999999999999999985
Q ss_pred --------------------------------------------------------------------------------
Q 019425 100 -------------------------------------------------------------------------------- 99 (341)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (341)
T Consensus 163 d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~Lwi 242 (493)
T KOG0804|consen 163 DGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLWI 242 (493)
T ss_pred cCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEEE
Confidence
Q ss_pred ----------ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeeccccCCCCceeeecCCCCCcCCCCCCCccCCC
Q 019425 100 ----------RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSED 169 (341)
Q Consensus 100 ----------Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl~q~k~DGKlVEl~~~~~~~~~~~g~~~~~~~ 169 (341)
||+.|||.+||++|+|+|||+++|+|||||+||+|||||+|+++|||+||+.+.+.++
T Consensus 243 cliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~------------ 310 (493)
T KOG0804|consen 243 CLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDS------------ 310 (493)
T ss_pred EEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEeccccccc------------
Confidence 9999999999999999999999999999999999999999999999999987654211
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-------------------cccHHHHHHHHHHH
Q 019425 170 SGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS-KRE-------------------SLIPETVEKAVASK 229 (341)
Q Consensus 170 ~~~~ea~~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~-~~~-------------------~~i~~~~ek~~~~k 229 (341)
...+.+.+.+||++||+|||||||.|||+.+.++.+ +.+ ..+.++..+.++.+
T Consensus 311 -------~~~~~~~~~~~~s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k 383 (493)
T KOG0804|consen 311 -------RKDDCDSLELEYSPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERK 383 (493)
T ss_pred -------cccCcceEEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 135677888999999999999999999988888776 211 11233455667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhccCCC
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDS 309 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~~~~~ 309 (341)
+++++.|++++.+|+++++++|++|++||..|+.+++++++++++++..+|++|+||+||||||||||++|+||+ ++.
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk--~dt 461 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK--SDT 461 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh--cch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 345
Q ss_pred CCcCCcEEeecCCCCCCCCCCcCCCCCCCCC
Q 019425 310 DGIKGGTVLPVSYQQSSPTNTRRHKKSSRRK 340 (341)
Q Consensus 310 ~ei~~Gti~~~~~~~~~~~~~~~~kk~~~r~ 340 (341)
++|++|||++++...+++++.+++||++||+
T Consensus 462 ~eIqegtI~~~~~s~~~~~~~~~kkk~nrrk 492 (493)
T KOG0804|consen 462 DEIQEGTILITQISPSSSSSVKSKKKSNRRK 492 (493)
T ss_pred hhhcCceeeccCCCCCccccccchhhhcccC
Confidence 6999999998776666666566666777765
No 2
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.29 E-value=1.3e-12 Score=99.07 Aligned_cols=55 Identities=38% Similarity=0.637 Sum_probs=48.1
Q ss_pred ccccccc-ccceeeeeee-----ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeee
Q 019425 83 VRFCGSH-IDHVEELIFI-----RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 137 (341)
Q Consensus 83 c~fC~~~-~e~w~cL~c~-----Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhr 137 (341)
|..|+.. .++|+||.|+ |+..+||..|+++++|++++++.+.+||+|++|.||+.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~ 61 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD 61 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence 6678877 8999999874 88899999999999999999999999999999999975
No 3
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.93 E-value=1.5e-08 Score=102.00 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=155.4
Q ss_pred CCCCcCcccccccccccCccccccCCCCeeE-eeeeeE-----EeccCCCCCC---CCCCCCCcccceecccCCCCChhh
Q 019425 11 DNHPITIEEAGFCTVSSTATRSRANPNPKFS-ERRGLV-----HLFRGTSQSY---QQNPNSRSTCIFVVAVPNYLSSDE 81 (341)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~sgnp~v~-~t~Gi~-----Hlf~~~~~~s---~~~pv~r~~~lcilavP~~~t~~d 81 (341)
...|..+.|---||+|= . ||+ .|.||+ |-||+.|+.. ..|||||.... |. .-...
T Consensus 166 s~~~~~~tELPTCpVCL----E------RMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~-----p~-~ve~~ 229 (493)
T KOG0804|consen 166 SEPPTGLTELPTCPVCL----E------RMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS-----PS-VVESS 229 (493)
T ss_pred CCCCCCcccCCCcchhH----h------hcCccccceeeeecccccchHHHhhcccCcChhhhhhcC-----cc-hhhhh
Confidence 33555566555888882 1 332 244666 9999999865 57888886443 32 22356
Q ss_pred hcccccccccceeee--------eee------cc-chhHHHHhhhhcCCc--eeeeccccEEEEecCCceeeeccccCCC
Q 019425 82 FVRFCGSHIDHVEEL--------IFI------RY-KEGHAVRHWKDTQHW--YSLDLRTQQIWDYVGDNYVHRLNQSKAD 144 (341)
Q Consensus 82 lc~fC~~~~e~w~cL--------~c~------Ry-~~~Ha~~H~~et~H~--~am~l~t~rVWdY~~D~yVhrl~q~k~D 144 (341)
.|..||.+.++|+|| |+- +| ..+|-+.--.+|+-. ||.|.=.+|..--..|+.....--...|
T Consensus 230 ~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~ 309 (493)
T KOG0804|consen 230 LCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDD 309 (493)
T ss_pred hhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEecccccc
Confidence 899999999999998 662 44 456666666777776 9999999999988888876554322222
Q ss_pred CceeeecCCCCCcCCCCCCCccCCCCCccccccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h
Q 019425 145 GKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSK---VEAIVDEYNRLLATQLETQRQYYESLLAEAKS--------K 213 (341)
Q Consensus 145 GKlVEl~~~~~~~~~~~g~~~~~~~~~~~ea~~~~K---ie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~--------~ 213 (341)
-. .. .|+.+++... .+.....+++ .+.+..||.+ +|||.||.|||.++.++.+ +
T Consensus 310 ---~~---~~-----~~~~~~~~~s-~ll~sqleSqr~y~e~~~~e~~q---sqlen~k~~~e~~~~e~~~l~~~~~~~e 374 (493)
T KOG0804|consen 310 ---SR---KD-----DCDSLELEYS-PLLTSQLESQRKYYEQIMSEYEQ---SQLENQKQYYELLITEADSLKQESSDLE 374 (493)
T ss_pred ---cc---cc-----CcceEEeecc-hhhhhhhhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHhhhhhhhHHH
Confidence 10 00 0122222211 1222222333 3456666666 9999999999999998775 2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 214 RESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK---EIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 214 ~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~---~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
.++.+.+..-.+...|+.++++++...+++-+ .|++++.-++.++.+..+ +.-....+.+...++++.||==.+
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~---~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKELKEEREENK---KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 33333333333456677777877776554332 345555444444333322 222222334445556666663222
Q ss_pred HhHhHh-hhhHHHHhccCCCCCcCCcEEeecCCC
Q 019425 291 RDLTVY-IEAQKTLTNMTDSDGIKGGTVLPVSYQ 323 (341)
Q Consensus 291 rDLmf~-leaq~ki~~~~~~~ei~~Gti~~~~~~ 323 (341)
--=--+ .++. .|.+. .|---.+-+.++.
T Consensus 452 e~qqklk~dt~-eIqeg----tI~~~~~s~~~~~ 480 (493)
T KOG0804|consen 452 EAQQKLKSDTD-EIQEG----TILITQISPSSSS 480 (493)
T ss_pred hhhhhhhcchh-hhcCc----eeeccCCCCCccc
Confidence 111111 4554 66552 3444445444433
No 4
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=98.33 E-value=3e-07 Score=65.99 Aligned_cols=45 Identities=31% Similarity=0.445 Sum_probs=40.3
Q ss_pred hcccccccccceeeeeee-----ccchhHHHHhhhhcCCceeeeccccEE
Q 019425 82 FVRFCGSHIDHVEELIFI-----RYKEGHAVRHWKDTQHWYSLDLRTQQI 126 (341)
Q Consensus 82 lc~fC~~~~e~w~cL~c~-----Ry~~~Ha~~H~~et~H~~am~l~t~rV 126 (341)
.|..|+...++|+||.|+ |+...|+..||.+|+|++++++.+.++
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~~ 50 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQRV 50 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEcccccC
Confidence 388999999999999984 777899999999999999999988753
No 5
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.28 E-value=6.1e-07 Score=91.15 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=54.4
Q ss_pred Chhhhcccccccccceeeeeee-----ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeee
Q 019425 78 SSDEFVRFCGSHIDHVEELIFI-----RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHR 137 (341)
Q Consensus 78 t~~dlc~fC~~~~e~w~cL~c~-----Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhr 137 (341)
...-.|..|.+...+|.||.|| |+.+.||..|+.+++|.+++++.|..||||.||.||-.
T Consensus 14 d~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d 78 (440)
T cd02669 14 DFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIID 78 (440)
T ss_pred cccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeC
Confidence 3345699999999999999997 56889999999999999999999999999999999973
No 6
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.97 E-value=7.8e-06 Score=68.95 Aligned_cols=76 Identities=24% Similarity=0.503 Sum_probs=58.6
Q ss_pred CCCCCCCCCcccceecccCCCCChhhhcccccc-cccceeeeeee------cc----------chhHHHHhhhhcCCcee
Q 019425 56 SYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGS-HIDHVEELIFI------RY----------KEGHAVRHWKDTQHWYS 118 (341)
Q Consensus 56 ~s~~~pv~r~~~lcilavP~~~t~~dlc~fC~~-~~e~w~cL~c~------Ry----------~~~Ha~~H~~et~H~~a 118 (341)
++..+|.++.+++|+++||++|+..|+|.||++ +.+.+.+++|+ || .....+.+|. ..-+.+
T Consensus 3 ~~~~~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fN-Gk~Fns 81 (110)
T PF07576_consen 3 SESDLPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFN-GKPFNS 81 (110)
T ss_pred CccCCCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhC-CCccCC
Confidence 345778889999999999999999988887777 58899999986 34 2333444444 778899
Q ss_pred eeccccEEEEecCCceeeec
Q 019425 119 LDLRTQQIWDYVGDNYVHRL 138 (341)
Q Consensus 119 m~l~t~rVWdY~~D~yVhrl 138 (341)
|+.++++|- ||.++
T Consensus 82 lEpE~Chvv------fV~~V 95 (110)
T PF07576_consen 82 LEPETCHVV------FVKSV 95 (110)
T ss_pred CCCceeEEE------EEEEE
Confidence 999999984 66553
No 7
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.2e-05 Score=82.76 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=47.7
Q ss_pred hhcccccccccceeeeeee-----cc-----chhHHHHhhhhcCCceeeec-----cccEEEEecCCcee
Q 019425 81 EFVRFCGSHIDHVEELIFI-----RY-----KEGHAVRHWKDTQHWYSLDL-----RTQQIWDYVGDNYV 135 (341)
Q Consensus 81 dlc~fC~~~~e~w~cL~c~-----Ry-----~~~Ha~~H~~et~H~~am~l-----~t~rVWdY~~D~yV 135 (341)
..|+-|.=...+|+||.|| |- -+|||..||++|+|+.|+-+ ++..++||+||.-+
T Consensus 174 ~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~ 243 (749)
T COG5207 174 LKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEI 243 (749)
T ss_pred ceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCccc
Confidence 4799999999999999985 43 57999999999999998876 66889999999864
No 8
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.6e-05 Score=82.32 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=49.8
Q ss_pred hhcccccccccceeeeeee-----cc------chhHHHHhhhhcCCceeeeccc-----cEEEEecCCceeeec
Q 019425 81 EFVRFCGSHIDHVEELIFI-----RY------KEGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYVHRL 138 (341)
Q Consensus 81 dlc~fC~~~~e~w~cL~c~-----Ry------~~~Ha~~H~~et~H~~am~l~t-----~rVWdY~~D~yVhrl 138 (341)
-.|.-|+=...+|+||.|| |. -++||..||.+|+|++|.-+.| .-|+||.||.=|-..
T Consensus 180 wkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v~dP 253 (763)
T KOG0944|consen 180 WKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEVRDP 253 (763)
T ss_pred ceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccccCc
Confidence 4699999999999999864 55 4799999999999999988754 789999999988655
No 9
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00016 Score=77.25 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=40.1
Q ss_pred cccceeeeeee-----c-cchhHHHHhhhh---cCCceeeeccccEEEEecCCcee
Q 019425 89 HIDHVEELIFI-----R-YKEGHAVRHWKD---TQHWYSLDLRTQQIWDYVGDNYV 135 (341)
Q Consensus 89 ~~e~w~cL~c~-----R-y~~~Ha~~H~~e---t~H~~am~l~t~rVWdY~~D~yV 135 (341)
..+.|.||.|| | -...||+.||.. +.||.+|++.+..+|||.||+.+
T Consensus 90 ~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl 145 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKL 145 (877)
T ss_pred ccceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchh
Confidence 35789999986 5 467899999973 57999999999999999999943
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.57 E-value=0.23 Score=47.92 Aligned_cols=111 Identities=14% Similarity=0.312 Sum_probs=64.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 177 FNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 177 ~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
+...+..|..+|...+..--+.=-.||..++..+.......- .++. .+...+..++.++..+..++..++..|..|..
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~-~~~~-~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS-EELE-SAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc-cccc-hhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 345677788899988887777777899999988876543211 1111 23344455556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 019425 257 NQEIMRKKFKEIEEREITSLRLRDATILDLEEQ 289 (341)
Q Consensus 257 nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQ 289 (341)
....+...+..-.......+..++.++.+|+.+
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 555554444433333333333444444444433
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.61 E-value=2.4 Score=40.80 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-------DVNSKLIKNQEIMRKK 264 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~-------~ln~~L~~nq~~~~~k 264 (341)
|+..|..=|..|+..+.....+.+......++ .+......-...+..+..|...++ .--..|...-..+...
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~-~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLE-ELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccc-cccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 66667677777777666655543322111111 011111111222223333332222 1122233333455566
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHH
Q 019425 265 FKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 265 ~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ 301 (341)
+.+++.+........+..|.+|+.+|..|-.-+..|.
T Consensus 246 l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 246 LRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 6666666666777778889999999999887776654
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.48 E-value=3.4 Score=39.53 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH--------------H-
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ--------------I- 290 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQ--------------l- 290 (341)
+...++.++.++..++.|+..+...-+.|.++++.++.++..++....+....-+.++..+.++ +
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555556666666666665555554444433333333333332 2
Q ss_pred HhHhHhhhhHHHHhc
Q 019425 291 RDLTVYIEAQKTLTN 305 (341)
Q Consensus 291 rDLmf~leaq~ki~~ 305 (341)
.+|.++++.+.+=++
T Consensus 174 ~ell~~yeri~~~~k 188 (239)
T COG1579 174 PELLSEYERIRKNKK 188 (239)
T ss_pred HHHHHHHHHHHhcCC
Confidence 567777777666553
No 13
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.61 E-value=1.2 Score=46.80 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 200 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 200 R~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k 279 (341)
+.||+.+|.++-.+....-++++ .....+..|..+|+..+++++. +...++....++..|++++....+..
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~--~f~~Ec~aL~~rL~~aE~ek~~-------l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAV--HFYAECRALQKRLESAEKEKES-------LEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56899999988765432112221 2446778888888877776643 33334445556666677776666667
Q ss_pred HHHhHhHHHHHHhHhHhhhhH
Q 019425 280 DATILDLEEQIRDLTVYIEAQ 300 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~leaq 300 (341)
+++|..|-|+|--|---|..|
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776665555444
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.47 E-value=2.8 Score=32.91 Aligned_cols=46 Identities=7% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee 270 (341)
.+..++..|+.+...+..+...++.-|..|...+..|+.++..+=.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777778888889999999999999888766543
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.44 E-value=4.9 Score=35.00 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
.++.+...+.++.+.+...++.+.+.....+..+..........++.++.+|..|+++|.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444445555555555555555666666667778888899999999874
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.11 E-value=6 Score=47.79 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=80.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhccc---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRL--LATQLETQRQYYESLLAEAKSKRESLI---PE--TVEKAVASKMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 182 e~i~~EY~~L--LtSQLEsQR~yyE~~l~~~~~~~~~~i---~~--~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
+...++-..+ .++.||.+..=|+..|++.+...+... .. .-.+....++..+...++.+.+.+..++..|+.|
T Consensus 1417 ~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l 1496 (1930)
T KOG0161|consen 1417 EDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNL 1496 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333 378888888888888888777654321 11 1122345667778888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHhHhHhhhhHH
Q 019425 255 IKNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 255 ~~nq~~~~~k~~~lee~~~---~~~~~k~~~i~dL~EQlrDLmf~leaq~ 301 (341)
......+...+.+++.+.. ...+..+.++.||+.++-++.--+++.+
T Consensus 1497 ~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE 1546 (1930)
T KOG0161|consen 1497 SQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE 1546 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8888877777766665443 3344556778888888888777666654
No 17
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.92 E-value=7.5 Score=33.40 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 228 SKMQDIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~----~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+.+..++..+..+..+...+ ......|......|..+-..++.+ +.....++.||.+|++=|--.|++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e----~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKE----LSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444333322 345667778888898876666665 345557889999999888766653
No 18
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.57 E-value=6.4 Score=39.57 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE-------ITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~-------~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
..+..+.|+.+|+.+..|..+-.+-+..|-........-...|-++. ...++.+++.|..|+-.|+|||.=+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778877776654433333333322222222223333322 34577788899999999999998776
Q ss_pred hHHHH
Q 019425 299 AQKTL 303 (341)
Q Consensus 299 aq~ki 303 (341)
+-=++
T Consensus 219 nLLQl 223 (401)
T PF06785_consen 219 NLLQL 223 (401)
T ss_pred HHHHh
Confidence 54444
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.56 E-value=8.2 Score=33.17 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHhHhHh
Q 019425 258 QEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 258 q~~~~~k~~~lee~~~~~~~---~k~~~i~dL~EQlrDLmf~ 296 (341)
...++..+++++.+....+. +|.+++++|+--|.||--.
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34555666666666665544 5777888888888888433
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.14 E-value=13 Score=38.55 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~ 211 (341)
....|++|-.-++..+.+++
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 21
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.86 E-value=8.9 Score=35.17 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=15.0
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~le 298 (341)
.+...++|.-|+.+.+=|..+|+
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777776666654
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.73 E-value=14 Score=42.24 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
.+..++.++++|++.|.+|..+++.++..|...+...+.+++..+++.
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455677788889999999999999999999999999988888776654
No 23
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.18 E-value=6 Score=44.69 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 019425 194 TQLETQRQYYESLLA-EAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV--------ADVNSKLIKNQEIMRKK 264 (341)
Q Consensus 194 SQLEsQR~yyE~~l~-~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~--------~~ln~~L~~nq~~~~~k 264 (341)
.+|++|+.|||+.|. ++-.+...+..+++. .+..++.+|..++..+.+|+..+ ..||.+|......+...
T Consensus 758 ~~~~~~~~~~e~el~sel~sqLt~ee~e~l~-kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~e 836 (1200)
T KOG0964|consen 758 HKLESQSNYFESELGSELFSQLTPEELERLS-KLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQE 836 (1200)
T ss_pred HHHHHHHHhHHHHHhHHHHhhcCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 478899999997664 343443332333333 35566777777777666654442 24566665443333222
Q ss_pred H-------------------HHHHHHHH---HHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 265 F-------------------KEIEEREI---TSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 265 ~-------------------~~lee~~~---~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
+ ..++.+.. ..++..+..|.++..+++++++-++....+.+
T Consensus 837 i~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek 899 (1200)
T KOG0964|consen 837 IGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEK 899 (1200)
T ss_pred hhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 12233456777888888999998888777655
No 24
>PRK09039 hypothetical protein; Validated
Probab=88.99 E-value=17 Score=36.28 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 260 IMRKKFKEIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
..+.++..++.++...+..+..+++.++.++
T Consensus 169 ~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 169 ESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444433333444444443
No 25
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.87 E-value=5.3 Score=30.94 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLE 287 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~ 287 (341)
++.|..|++.|-.--..++.-|..|+..+..|...-..+-++...+....+.-|.-|.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888877777778888889888888877665555555444433344444443
No 26
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.74 E-value=16 Score=32.11 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHhHhHHHHHHh
Q 019425 281 ATILDLEEQIRD 292 (341)
Q Consensus 281 ~~i~dL~EQlrD 292 (341)
.++.+|..+.++
T Consensus 129 ~k~eel~~k~~~ 140 (143)
T PF12718_consen 129 EKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 27
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.73 E-value=13 Score=41.15 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019425 192 LATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~ 213 (341)
|...|+.||.-+|.+..++++.
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999899888777654
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.55 E-value=27 Score=37.30 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.8
Q ss_pred chhHHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLA 193 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLt 193 (341)
..+++.+.-|-..|+.
T Consensus 142 Q~qlE~~qkE~eeL~~ 157 (546)
T PF07888_consen 142 QNQLEECQKEKEELLK 157 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 29
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=13 Score=34.90 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH-H--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HH
Q 019425 193 ATQLETQRQYYESLLAEAKSKRESLIPETVEK-A--VASKMQDIQNELDICEEAK---KAVADVNSKLIKNQEIM---RK 263 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek-~--~~~k~~~l~~kl~kl~~E~---~~~~~ln~~L~~nq~~~---~~ 263 (341)
.|+|+.|-.-|-.+|...+.--+. .++.+ | +-++-.-.++..+.|.... ....--+++|...|... +.
T Consensus 35 IskLDaeL~k~~~Qi~k~R~gpaq---~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~ 111 (218)
T KOG1655|consen 35 ISKLDAELCKYKDQIKKTRPGPAQ---NALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKD 111 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899888887643322 22221 1 1122222333333333221 11123456666665543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 264 KFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 264 k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
-.+++.... .+-+=++|+||+.++.|||-
T Consensus 112 ~~k~mK~~y---kkvnId~IedlQDem~Dlmd 140 (218)
T KOG1655|consen 112 TNKEMKKQY---KKVNIDKIEDLQDEMEDLMD 140 (218)
T ss_pred HHHHHHHHH---ccCCHHHHHHHHHHHHHHHH
Confidence 233333222 12234689999999999885
No 30
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=87.18 E-value=23 Score=33.72 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 198 TQRQYYESLLAEAKSKRESLIPETVEKA------VASKMQDIQNELDICEEAK---KAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 198 sQR~yyE~~l~~~~~~~~~~i~~~~ek~------~~~k~~~l~~kl~kl~~E~---~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
..+.-|+..|..++.+.+.-+.+|...+ +.......+.+.+++.++. ....=+.++.......|...+.++
T Consensus 37 ~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a 116 (255)
T TIGR03825 37 DEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEA 116 (255)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677778887776554333332211 1111222233333322221 111223333444444454444444
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 269 EEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 269 ee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
............+.+.+++++|-||.+-+
T Consensus 117 ~~i~~~a~~~~~~~l~~~e~el~~La~~i 145 (255)
T TIGR03825 117 NAIVEEAKDDYEEKIESAQPLIIELACAL 145 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344455666666666665543
No 31
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.46 E-value=45 Score=35.19 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLA 208 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~ 208 (341)
..-+..+..+|.+|-. +|..++...+..+.
T Consensus 250 ~~~i~~a~~~i~~L~~-~l~~l~~~~~~~l~ 279 (582)
T PF09731_consen 250 NSLIAHAKERIDALQK-ELAELKEEEEEELE 279 (582)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3445556666665544 44444444444443
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.32 E-value=39 Score=37.27 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=5.7
Q ss_pred CCCceeeec
Q 019425 143 ADGKLVEMN 151 (341)
Q Consensus 143 ~DGKlVEl~ 151 (341)
+||++|-++
T Consensus 461 s~~e~v~l~ 469 (717)
T PF10168_consen 461 SSGECVVLP 469 (717)
T ss_pred cCCcEEEEE
Confidence 467766655
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.31 E-value=13 Score=41.78 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
.++++..+++...|...++..-+.|....+....++..+.|+.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666665555555555554443
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.77 E-value=18 Score=40.84 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEA---KKAVADVNSKLIKNQEI 260 (341)
Q Consensus 232 ~l~~kl~kl~~E---~~~~~~ln~~L~~nq~~ 260 (341)
.|+.++.-|+++ +..+++||+-|..++..
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRE 490 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655554 34456777777766544
No 35
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.40 E-value=31 Score=32.53 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=9.2
Q ss_pred HHHHHHhHhHhhhhHHHH
Q 019425 286 LEEQIRDLTVYIEAQKTL 303 (341)
Q Consensus 286 L~EQlrDLmf~leaq~ki 303 (341)
+-|++|-||--+..-...
T Consensus 147 ~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 147 LAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345666665555443333
No 36
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.32 E-value=32 Score=32.15 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHhH
Q 019425 248 ADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDL 293 (341)
Q Consensus 248 ~~ln~~L~~nq~~~~~k~~~lee~~~~~~~---~k~~~i~dL~EQlrDL 293 (341)
.++|..=...|.....++..|+.+....+. ..+..+..|+.||.+|
T Consensus 160 e~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 160 EEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555554443332 2334455555555554
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.27 E-value=6.9 Score=41.64 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 243 AKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 243 E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
.+..++..|..|.+..+.++-++.+-.......+..|+.+|..|.|+..-||.=++
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666665555554445556666777888888877766665443
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.97 E-value=37 Score=33.45 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=7.9
Q ss_pred HHhHhHHHHHHhHhHhhh
Q 019425 281 ATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~le 298 (341)
+++.+|+++|+++-..++
T Consensus 251 ~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 251 EQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 39
>PRK11637 AmiB activator; Provisional
Probab=84.83 E-value=13 Score=37.74 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=5.7
Q ss_pred HHhHhHHHHHHhHh
Q 019425 281 ATILDLEEQIRDLT 294 (341)
Q Consensus 281 ~~i~dL~EQlrDLm 294 (341)
++|..+++++.+++
T Consensus 117 ~~l~~~~~~l~~rl 130 (428)
T PRK11637 117 QQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=84.59 E-value=53 Score=37.99 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019425 192 LATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~ 213 (341)
+...|+.+...|+..+.+....
T Consensus 345 ~~~e~~~~~~~~~~~~~e~~~~ 366 (1163)
T COG1196 345 LLEELEQLLAELEEAKEELEEK 366 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555443
No 41
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.53 E-value=17 Score=35.04 Aligned_cols=37 Identities=14% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
+|..+-++|..|-.-|+.+|++|...+..+...++.+
T Consensus 101 dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 101 DLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333334444444445666666665555554444433
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.38 E-value=57 Score=37.37 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
++.|+..|++++..+...+..++++.+.|...++.+
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555555555555554444443
No 43
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=14 Score=31.31 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=13.3
Q ss_pred HHHHHhHhHHHHHHhHh
Q 019425 278 LRDATILDLEEQIRDLT 294 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLm 294 (341)
....+|..|++||+||=
T Consensus 87 ~l~~rvd~Lerqv~~Le 103 (108)
T COG3937 87 ELTERVDALERQVADLE 103 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34468999999999973
No 44
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.79 E-value=30 Score=30.42 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVAD---VNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~---ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
+..|++.|+..|+++...+..+.. -+.....+.+.+..+|..||+++.
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 455666666666666655443321 112222344456666666666543
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.52 E-value=43 Score=33.03 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 275 SLRLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
.+...+++|+++.++...+.--|...+++-.
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999999998888887777654
No 46
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.49 E-value=32 Score=37.87 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019425 236 ELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 236 kl~kl~~E~~~~~~ln~~L~~ 256 (341)
+|..|.++++.+++..++|.+
T Consensus 580 ~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444433
No 47
>PRK09039 hypothetical protein; Validated
Probab=83.42 E-value=38 Score=33.90 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhHHHHHHhHhH
Q 019425 255 IKNQEIMRKKFKEIEEREITSL---RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 255 ~~nq~~~~~k~~~lee~~~~~~---~~k~~~i~dL~EQlrDLmf 295 (341)
....+.++.++..++....... +..+.+|.+|+..|+..+.
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555443332 2345566777666666553
No 48
>PRK02224 chromosome segregation protein; Provisional
Probab=83.31 E-value=70 Score=35.37 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 184 IVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 184 i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
+..+|...+.. ++.+..-.+..+..++.+
T Consensus 469 ~~~~~~~~~~~-~~~~~~~le~~l~~~~~~ 497 (880)
T PRK02224 469 TIEEDRERVEE-LEAELEDLEEEVEEVEER 497 (880)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33344444333 555555566655555543
No 49
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.10 E-value=19 Score=35.58 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 197 ETQRQYYESLLAEAK 211 (341)
Q Consensus 197 EsQR~yyE~~l~~~~ 211 (341)
+..|..|...|.++.
T Consensus 22 ~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 22 EKERDTYQEFLKKLE 36 (314)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666665
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.93 E-value=46 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~ 211 (341)
.++|.-...+.+..+ +++.+|...-++..
T Consensus 13 q~lD~e~~rl~~~~~----~~~~~l~k~~~e~e 41 (239)
T COG1579 13 QKLDLEKDRLEPRIK----EIRKALKKAKAELE 41 (239)
T ss_pred HHHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Confidence 356666666666666 67777776655544
No 51
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.80 E-value=15 Score=37.80 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019425 181 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 181 ie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~ 214 (341)
++.|..++...-.++..+-+.|++..+.+++++.
T Consensus 144 ~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L 177 (498)
T TIGR03007 144 LTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKL 177 (498)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444445666777888888888877654
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.47 E-value=43 Score=36.84 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHhHhHh
Q 019425 260 IMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 260 ~~~~k~~~lee~~~---~~~~~k~~~i~dL~EQlrDLmf~ 296 (341)
..+.+.+++|.+.+ ..++.+++++..|+++++.|-.|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433 33456667777777766655554
No 53
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.30 E-value=16 Score=29.41 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
.|..+.+.+...+..+..-|..|...+..|+.++..|
T Consensus 36 ~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 36 SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345556777888888888887766543
No 54
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.10 E-value=47 Score=34.95 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 019425 256 KNQEIMRKKFKEIE 269 (341)
Q Consensus 256 ~nq~~~~~k~~~le 269 (341)
...+.+++++.+++
T Consensus 147 e~l~~f~~~v~~~~ 160 (475)
T PRK10361 147 EQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 55
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=81.69 E-value=41 Score=31.30 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHH
Q 019425 254 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 254 L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ 301 (341)
|++....+.+|+++||.+..+.+++ .-.|++|-+||+-+.
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE--------N~eLKElcl~LDeer 145 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE--------NLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHhccc
Confidence 3444445556666666655444332 235778889998877
No 56
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.63 E-value=46 Score=35.70 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019425 193 ATQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~ 214 (341)
.+|+++-...|+.+|+.++.+.
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Ei 303 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEI 303 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 4666666777777777666553
No 57
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.58 E-value=11 Score=38.42 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 258 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 258 q~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
.+.++.++..++.+. +...+++.-|++-|+||-.
T Consensus 254 re~LRAel~ree~r~----K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 254 REFLRAELEREEKRQ----KMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhh
Confidence 344455444433332 3344677888888888744
No 58
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.37 E-value=86 Score=34.07 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 182 EAIVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
.-++.||.. ++-+|-.-+.-|..++.++..+
T Consensus 7 ~qlq~Erd~-ya~~lk~e~a~~qqr~~qmsee 37 (617)
T PF15070_consen 7 KQLQAERDQ-YAQQLKEESAQWQQRMQQMSEE 37 (617)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 3445545555566666665544
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.35 E-value=47 Score=30.99 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 270 EREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 270 e~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
++......+.+.+|..|++|+++.+
T Consensus 168 eEy~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 168 EEYRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555666788899999988764
No 60
>PRK12704 phosphodiesterase; Provisional
Probab=81.32 E-value=75 Score=33.69 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=4.9
Q ss_pred cCCcEEeecC
Q 019425 312 IKGGTVLPVS 321 (341)
Q Consensus 312 i~~Gti~~~~ 321 (341)
+.+-||.+++
T Consensus 206 ~~e~~~~~v~ 215 (520)
T PRK12704 206 VAETTVSVVN 215 (520)
T ss_pred hhhhceeeee
Confidence 4555554443
No 61
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.25 E-value=74 Score=33.24 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh---hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 184 IVDEYNRLLA--TQLETQRQYYESLLAEAKSK---RESLIPETVEKAVASKMQDIQNELDICEEAKKAVADV 250 (341)
Q Consensus 184 i~~EY~~LLt--SQLEsQR~yyE~~l~~~~~~---~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~l 250 (341)
...||.+|.+ --||.|+.--|..-.+.-.+ +-++|.-.+++..+.....+|.++..+..|...++.+
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~ 319 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSL 319 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888777 56777777665443332221 1123333334433334444555555555544444333
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=81.21 E-value=42 Score=38.13 Aligned_cols=7 Identities=14% Similarity=-0.216 Sum_probs=3.4
Q ss_pred cccceee
Q 019425 89 HIDHVEE 95 (341)
Q Consensus 89 ~~e~w~c 95 (341)
+.+.|+-
T Consensus 679 ~~dv~lN 685 (1018)
T KOG2002|consen 679 FEDVWLN 685 (1018)
T ss_pred CCceeee
Confidence 3455554
No 63
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.01 E-value=42 Score=30.20 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 191 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAK 244 (341)
Q Consensus 191 LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~ 244 (341)
+-.++||.++.-|...+++++.+....-.... ..+.....+|+.+++++..++
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~-~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQNSRKSEF-AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888766432111111 123344555666666655544
No 64
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.87 E-value=29 Score=29.47 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 242 EAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 242 ~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
+++..|+..+..|+........++.+|+
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333
No 65
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=80.83 E-value=61 Score=32.01 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 177 FNSKVEAIVDEYNRLLATQLETQRQYYE 204 (341)
Q Consensus 177 ~~~Kie~i~~EY~~LLtSQLEsQR~yyE 204 (341)
|.+|++.+.--|..+|..--.-||.+..
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~ 47 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKK 47 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999877777776654
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.83 E-value=29 Score=32.42 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
.+++.+++........+++-|+.|.+
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333344444433
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.64 E-value=47 Score=38.53 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHhHhHHHHHHhHhH-hhhhHHHHhcc
Q 019425 281 ATILDLEEQIRDLTV-YIEAQKTLTNM 306 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf-~leaq~ki~~~ 306 (341)
..+.++++++.+|+. -|+.+.|+.+.
T Consensus 998 ~~~e~i~k~~~~lk~~rId~~~K~e~~ 1024 (1293)
T KOG0996|consen 998 SELENIKKSENELKAERIDIENKLEAI 1024 (1293)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 466777777777777 67766666654
No 68
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.60 E-value=54 Score=38.10 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 019425 178 NSKVEAIVDEYNRLLATQ--LETQRQYYESLLAEAKSK 213 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQ--LEsQR~yyE~~l~~~~~~ 213 (341)
+..+..+...|..++..+ ++.|+.=+...+.+++..
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~ 821 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENR 821 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhH
Confidence 345667777777777665 567777677666666553
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.37 E-value=37 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 019425 192 LATQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~ 214 (341)
-..|||++..-+...+.++...+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777766544
No 70
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.23 E-value=34 Score=37.99 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 182 EAIVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
.....+.+.| ...|+.||.-+|....++++.
T Consensus 507 ~~~~~~~~~l-i~~L~~~~~~~e~~~~~~~~~ 537 (771)
T TIGR01069 507 GEFKEEINVL-IEKLSALEKELEQKNEHLEKL 537 (771)
T ss_pred HhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 467888888888888877654
No 71
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.17 E-value=84 Score=33.19 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQLETQRQY 202 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQR~y 202 (341)
++..+..+-..-+...|+.|+.=
T Consensus 266 ~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 266 ELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445667777777654
No 72
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=80.12 E-value=54 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLAT---QLETQRQYYESLLAEAK 211 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtS---QLEsQR~yyE~~l~~~~ 211 (341)
.|+..+..-+..+-.. .-...|..-|.++..+.
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~ 40 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIK 40 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555554444433322 12333444445544443
No 73
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=80.06 E-value=7.9 Score=28.90 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 260 IMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
.++.|+..+-...-..+.....+|.+|+..|.|||-
T Consensus 14 qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 14 QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444444434455566778899999999985
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.83 E-value=86 Score=33.65 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
+.+|+.+...+......+..-+..|.......+.++.++++..
T Consensus 187 ~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 187 MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444555555555555443
No 75
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.62 E-value=79 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=9.8
Q ss_pred hHhHHHHHHhHhHhhhhHHHH
Q 019425 283 ILDLEEQIRDLTVYIEAQKTL 303 (341)
Q Consensus 283 i~dL~EQlrDLmf~leaq~ki 303 (341)
..-+.-|.-.||--+-.++-.
T Consensus 384 L~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 384 LDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHhcchHHHHHHHHHhHHHH
Confidence 333344555555555444433
No 76
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.08 E-value=21 Score=33.07 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=7.1
Q ss_pred HHHHHhHhHHHHHHh
Q 019425 278 LRDATILDLEEQIRD 292 (341)
Q Consensus 278 ~k~~~i~dL~EQlrD 292 (341)
.+++++..++.++..
T Consensus 93 ~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 93 DKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555444
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.56 E-value=59 Score=37.61 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=15.7
Q ss_pred chhHHHHhhhhcCCceeeeccccEEEEe
Q 019425 102 KEGHAVRHWKDTQHWYSLDLRTQQIWDY 129 (341)
Q Consensus 102 ~~~Ha~~H~~et~H~~am~l~t~rVWdY 129 (341)
.-..|..+.....+.+-+=.-++-+|+-
T Consensus 621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~ 648 (1163)
T COG1196 621 DLEQARRLARKLRIKYRIVTLDGDLVEP 648 (1163)
T ss_pred CHHHHHHHHHhcCCCceEEecCCcEEeC
Confidence 3455666666555555555555556653
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.30 E-value=47 Score=34.44 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAK 244 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~ 244 (341)
++..+++..+..|..|++|.
T Consensus 45 ai~a~~~~~E~~l~~Lq~e~ 64 (459)
T KOG0288|consen 45 AIKAKLQEKELELNRLQEEN 64 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 79
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=77.87 E-value=37 Score=27.81 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 221 TVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQE---IMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 221 ~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~---~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
.+.+....+..++......+....+.+......|..... ...+++..||+ .....|+-..+|+.+++.
T Consensus 28 ~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~----~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ----TVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 334445556666666666665555555555544433322 22224443333 234455666666666654
No 80
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.68 E-value=61 Score=30.20 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 183 AIVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 183 ~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
+..+=...+=..+||.|..|.|..|...+.+
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~r 127 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEAR 127 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777889999999999888765543
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.06 E-value=45 Score=36.67 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------H----HHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 236 ELDICEEAKKAVADVNSKLIKNQEIM-RKK------F----KEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 236 kl~kl~~E~~~~~~ln~~L~~nq~~~-~~k------~----~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
..+.|...+..+++-|.-|.+++..- +-| + .++| -....+..+|.+|.||+..|.+||.-+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e-i~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE-IAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555666666666666554321 001 1 1111 122346678999999999999998743
No 82
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=76.86 E-value=42 Score=27.91 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019425 191 LLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 191 LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
++.-.|+.+|.-|+.+...+..+
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~ 33 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQR 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888887776654
No 83
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.70 E-value=29 Score=36.43 Aligned_cols=75 Identities=11% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI----EEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l----ee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
.+..++.+++.++..+..+-+.+++-|+.|++.+.....++... ..+..........++..|+.+|.||+--|+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666777766666666667777766555444443221 1222222233334556677777777665543
No 84
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.31 E-value=30 Score=33.18 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee 270 (341)
++.||+.+.+|+..+.+-|+.|....+..+.+++.++.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555554443
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.83 E-value=1.2e+02 Score=32.44 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
..+.+....+|..+.+.+|-. -|+.|.+++.-
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~----ie~~L~~ae~~ 90 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPE----IEEQLFEAEEY 90 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHH
Confidence 367899999999999998844 56666666553
No 86
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.16 E-value=91 Score=30.93 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 019425 194 TQLETQRQYYESL 206 (341)
Q Consensus 194 SQLEsQR~yyE~~ 206 (341)
+-|++...|||=+
T Consensus 126 aRl~ak~~WYeWR 138 (312)
T smart00787 126 ARLEAKKMWYEWR 138 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3456778888843
No 87
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.67 E-value=45 Score=27.17 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 228 SKMQDIQNELDICEEAKKAVA-DVNSKLIK--NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~--nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+..+++.+++.+..+++.+. ++.+.... +-+.+..+.+.+.+ .++..+++..++++++..++..|
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~----~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKE----EIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 445556666666666655442 22222221 23334444443333 34555667788888888887654
No 88
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.66 E-value=90 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 281 ATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
+.+..|++.-|||-.-|..+.|-.+
T Consensus 164 esvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5688999999999999888876633
No 89
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.32 E-value=47 Score=32.90 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.|..+++-|+..+ .++-+.|..-+...+.|+++++ +++........++.+|++||+..--.|
T Consensus 109 ~l~yqvd~Lkd~l---ee~eE~~~~~~re~~eK~~elE-r~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 109 ALMYQVDLLKDKL---EELEETLAQLQREYREKIRELE-RQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444333 3344445555555566777764 444555556677888888886554333
No 90
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.09 E-value=71 Score=30.13 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHhHHHHHH-hHhHhhh
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER-------EITSLRLRDATILDLEEQIR-DLTVYIE 298 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~-------~~~~~~~k~~~i~dL~EQlr-DLmf~le 298 (341)
+.|..+++.+.+|...++.-|+.|.+-....++++..++++ .....-.....+..|++.|. |+=|-.+
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChH
Confidence 33444444444444444444444443333333333333332 22223334455666666666 6655555
No 91
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.98 E-value=29 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 265 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~ 265 (341)
.|++....+...+..+..-|+.|...+..|+.++
T Consensus 36 ~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 36 SLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444555555555555444
No 92
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.63 E-value=89 Score=30.52 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 253 KLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 253 ~L~~nq~~~~~k~~~lee 270 (341)
.+..+.+.++.+|+.+++
T Consensus 77 ~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 77 QSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444433333
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.51 E-value=1.2e+02 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~ 213 (341)
..+.+.+..+|..+.+.+|-. -|..|.+++..
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~----ie~~l~~ae~~ 94 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPD----IEEQLFEAEEL 94 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHH
Confidence 477899999999999999965 67777776654
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.96 E-value=1.5e+02 Score=34.88 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRL 191 (341)
Q Consensus 178 ~~Kie~i~~EY~~L 191 (341)
++.++.+..++..|
T Consensus 828 e~ei~~~~~el~~l 841 (1311)
T TIGR00606 828 NQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 95
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.74 E-value=2e+02 Score=33.65 Aligned_cols=7 Identities=0% Similarity=0.059 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 019425 105 HAVRHWK 111 (341)
Q Consensus 105 Ha~~H~~ 111 (341)
|.+.||.
T Consensus 539 gSL~~fL 545 (1201)
T PF12128_consen 539 GSLLEFL 545 (1201)
T ss_pred CcHHHHH
Confidence 3444444
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.40 E-value=42 Score=36.33 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=10.0
Q ss_pred CCcCCcEEeecCCCC
Q 019425 310 DGIKGGTVLPVSYQQ 324 (341)
Q Consensus 310 ~ei~~Gti~~~~~~~ 324 (341)
-.|++|.|+.+-.++
T Consensus 540 ~gik~GDvi~v~~~s 554 (652)
T COG2433 540 YGIKEGDVILVEDPS 554 (652)
T ss_pred hccccCcEEEEEcCC
Confidence 348999998654333
No 97
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.29 E-value=1.6e+02 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019425 187 EYNRLLATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 187 EY~~LLtSQLEsQR~yyE~~l~~~~~ 212 (341)
+.+.-+.-|+|.|-.-||.-+...+.
T Consensus 812 qL~~k~~~q~Eq~~rrFeqE~~~kkr 837 (1187)
T KOG0579|consen 812 QLQAKGIKQVEQQARRFEQEQTNKKR 837 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445566667776677766554443
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.29 E-value=70 Score=28.30 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
.++..+...+..+..|+..++.-+..|.+....++.++.+|+...
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444555555555555655555443
No 99
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.28 E-value=1.1e+02 Score=34.31 Aligned_cols=44 Identities=34% Similarity=0.459 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHhH
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~---~~~~~k~~~i~dL~EQlrDL 293 (341)
+++++|. |.+.++-+++..|.++. -.++.+|++|+.|+|=.|+|
T Consensus 502 ev~eal~-~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 502 EVEEALV-NVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHHH-HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5566654 34456666666666553 44678999999999999988
No 100
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.28 E-value=2.4e+02 Score=34.94 Aligned_cols=71 Identities=24% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHhHHHHHHhHhHhhhhHHHHh
Q 019425 234 QNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI---TSLRLRDATILDLEEQIRDLTVYIEAQKTLT 304 (341)
Q Consensus 234 ~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~---~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~ 304 (341)
..++.++.++...+++-+.+|.+.-..+..++.++..... +..+.....+..|+.||.|+---|+.+++..
T Consensus 963 e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 963 ENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333332222111 1112223455667777777777666665553
No 101
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=72.14 E-value=73 Score=28.92 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 200 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 200 R~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k 279 (341)
-.||..+..-+..+....+.+.++ .+.....+.+.+.+.+..++. .....|.+....+.....++.. .+...
T Consensus 90 ~syY~~L~~~id~~~~~~~~~~i~-~L~~~i~~~q~~~~~~i~~L~---~f~~~l~~D~~~l~~~~~~l~~----~l~~~ 161 (184)
T PF05791_consen 90 QSYYDTLVEAIDQKDKEDLKEIIE-DLQDQIQKNQDKVQALINELN---DFKDKLQKDSRNLKTDVDELQS----ILAGE 161 (184)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHH----HHhcc
Confidence 558888777664332222222222 233344445555555554443 3344566666666665544443 34445
Q ss_pred HHHhHhHHHHHHhHh
Q 019425 280 DATILDLEEQIRDLT 294 (341)
Q Consensus 280 ~~~i~dL~EQlrDLm 294 (341)
...|.+|+.+|.++-
T Consensus 162 ~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 162 NGDIPQLQKQIENLN 176 (184)
T ss_dssp T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHH
Confidence 567778888777654
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.03 E-value=71 Score=28.26 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKN-------QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~n-------q~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.++..++.|...|+.+..|+..+...-+.++.. .......++.+|.............+..|+.|++.|
T Consensus 63 ~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 63 ELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467788888999998888886554333333222 222344555555554444444556777888887765
No 103
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.97 E-value=54 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=5.3
Q ss_pred HHhHhHHHHHHh
Q 019425 281 ATILDLEEQIRD 292 (341)
Q Consensus 281 ~~i~dL~EQlrD 292 (341)
.++.+|+..|+.
T Consensus 91 ~~~~elk~~l~~ 102 (105)
T cd00632 91 EKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 104
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=71.75 E-value=67 Score=27.86 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=6.0
Q ss_pred HHHHHhHhHHHHH
Q 019425 278 LRDATILDLEEQI 290 (341)
Q Consensus 278 ~k~~~i~dL~EQl 290 (341)
..+.+|.+|.+||
T Consensus 122 ~l~~qv~~~~~~~ 134 (141)
T PRK08476 122 QLLSQMPEFKEAL 134 (141)
T ss_pred HHHHhHHHHHHHH
Confidence 3334445555444
No 105
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=71.26 E-value=24 Score=36.28 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 227 ASKMQDIQNELDICEEAK-KAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~-~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
......|+.++++|+.+. ..+.-++++|+. -+-+++.||+.........+.+|..|+.+|.|+
T Consensus 225 k~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqE----Er~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 225 KESQSRLEESIEKLKEQYQREYQFILEALQE----ERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556666777666533 234456666644 344666778888777777777777777665443
No 106
>PRK02224 chromosome segregation protein; Provisional
Probab=71.15 E-value=1.7e+02 Score=32.34 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019425 196 LETQRQYYESLLAEAKS 212 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~ 212 (341)
++.-+..++..+..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (880)
T PRK02224 178 VERVLSDQRGSLDQLKA 194 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555444
No 107
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.07 E-value=1.5e+02 Score=32.82 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=18.4
Q ss_pred HHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 278 LRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
.....+..|+|.+.+|--.+.-..++..
T Consensus 272 e~~~tv~~LqeE~e~Lqskl~~~~~l~~ 299 (716)
T KOG4593|consen 272 ENRETVGLLQEELEGLQSKLGRLEKLQS 299 (716)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777777766666654
No 108
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.96 E-value=85 Score=35.43 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKA 246 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~ 246 (341)
.+..++.+++.+-..|..|+..
T Consensus 267 ~ieE~m~qlk~kns~L~~ElSq 288 (1265)
T KOG0976|consen 267 EIEEKMRQLKAKNSVLGDELSQ 288 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 4455566666555555555543
No 109
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=70.93 E-value=89 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 188 YNRLLATQLETQRQYYE 204 (341)
Q Consensus 188 Y~~LLtSQLEsQR~yyE 204 (341)
+++++...+-.||+.|=
T Consensus 86 ~~~~~~~l~raqrn~Yi 102 (216)
T KOG1962|consen 86 RTHLLEALFRAQRNLYI 102 (216)
T ss_pred HHHHHHHHHHHHhhhHH
Confidence 44556666666666543
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.72 E-value=93 Score=33.49 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 261 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 261 ~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
...+++.+.+...+..+..+.+|+-|++++.++-.-+.++-+
T Consensus 472 ~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~ 513 (581)
T KOG0995|consen 472 AESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMK 513 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444556677777777776655554443
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.93 E-value=1.5e+02 Score=31.32 Aligned_cols=12 Identities=33% Similarity=0.290 Sum_probs=6.3
Q ss_pred CCcCCcEEeecC
Q 019425 310 DGIKGGTVLPVS 321 (341)
Q Consensus 310 ~ei~~Gti~~~~ 321 (341)
+-+.+-||.+++
T Consensus 198 ~~~~e~~~~~v~ 209 (514)
T TIGR03319 198 DHVAETTVSVVN 209 (514)
T ss_pred hhhhhheeeeEE
Confidence 345566665444
No 112
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.61 E-value=88 Score=28.40 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHh
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 304 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~ 304 (341)
.-|+.|......|+.+++.|+.++... .+++..++|--+-|+-.++--.++.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L----~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKL----RQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666554322 2445566666666776666666654
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.51 E-value=95 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQLETQRQYY 203 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQR~yy 203 (341)
....|-.-|+......|+-.+..=
T Consensus 10 af~~iK~YYndIT~~NL~lIksLK 33 (201)
T PF13851_consen 10 AFQEIKNYYNDITLNNLELIKSLK 33 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999888887665543
No 114
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.22 E-value=1e+02 Score=28.94 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=9.4
Q ss_pred HhHhHHHHHHhHhHhhh
Q 019425 282 TILDLEEQIRDLTVYIE 298 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~le 298 (341)
.+..|+.+|-+|---|.
T Consensus 198 ~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655554444
No 115
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=68.96 E-value=71 Score=28.09 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVAD 249 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ 249 (341)
...|+..||.|..|+-.+++
T Consensus 36 ~eaL~~ELDsL~~EkvhLee 55 (134)
T PF15233_consen 36 WEALQRELDSLNGEKVHLEE 55 (134)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 45677788888777765543
No 116
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=68.75 E-value=67 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019425 191 LLATQLETQRQYYESLLAEAKSKRES 216 (341)
Q Consensus 191 LLtSQLEsQR~yyE~~l~~~~~~~~~ 216 (341)
.|..+++.||.-...+..++++++..
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER~A 28 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEERSA 28 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999887654
No 117
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.09 E-value=48 Score=34.82 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
.++..|......+..+.++++++. ......+.+|+.|+.++.
T Consensus 102 ~i~~av~~~~~~~~~~~~ql~~~~----~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 102 QIQQAVQSETQELTKEIEQLKSER----QQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcc
Confidence 455555554444444444443332 233466788888887754
No 118
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.89 E-value=1.7e+02 Score=31.90 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAV-------ADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~-------~~ln~~L~~nq~~~~~k~~~le 269 (341)
+...+..|++.+-++..++..+ .-+++-|.++...++.++..++
T Consensus 165 LK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 165 LKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777666666554222 2344455554444444444443
No 119
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=67.83 E-value=1.6e+02 Score=31.18 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 247 VADVNSKLIKN-------QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 247 ~~~ln~~L~~n-------q~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+.+|-++|.-| ++.++.++...-.+.-.-.+.|++-+..|+-||+||=.||.-
T Consensus 186 lDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF 245 (621)
T KOG3759|consen 186 LDELREKLELNLDIDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF 245 (621)
T ss_pred HHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665433 455666665544444444567888899999999999777754
No 120
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.64 E-value=59 Score=33.43 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
.+++-..+.++|++....+.++ -+.....++..+..+|++..=+-.++-..|.|.=|....=|.-||
T Consensus 252 ~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 252 ALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444455555444333222 233344566666666776554443343344455555566667777
No 121
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=67.43 E-value=73 Score=26.58 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019425 198 TQRQYYESLLAEAKSKR 214 (341)
Q Consensus 198 sQR~yyE~~l~~~~~~~ 214 (341)
.||-++|-+|.+++...
T Consensus 4 ~~r~e~e~Ri~rLEend 20 (98)
T PF11166_consen 4 YQRHEHEWRIRRLEEND 20 (98)
T ss_pred hhhhhHHHHHHHHHHhh
Confidence 57888899999988653
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.23 E-value=48 Score=35.92 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
.+.++..++++++.|.+.|+..++.|.+..+.++.++..+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556665555555555555554444444444433
No 123
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=66.96 E-value=63 Score=32.56 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKK 245 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~ 245 (341)
...++..+|+++..++.
T Consensus 159 e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 159 EANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455556666555443
No 124
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.73 E-value=73 Score=34.32 Aligned_cols=13 Identities=8% Similarity=0.067 Sum_probs=7.0
Q ss_pred HhHhHHHHHHhHh
Q 019425 282 TILDLEEQIRDLT 294 (341)
Q Consensus 282 ~i~dL~EQlrDLm 294 (341)
.+..+++|+....
T Consensus 301 ll~~~~~q~~~e~ 313 (650)
T TIGR03185 301 LLDSTKAQLQKEE 313 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555655544
No 125
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.44 E-value=1.1e+02 Score=30.57 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=11.7
Q ss_pred eeeeccccEEEEecCCc
Q 019425 117 YSLDLRTQQIWDYVGDN 133 (341)
Q Consensus 117 ~am~l~t~rVWdY~~D~ 133 (341)
-||+.-.+.-|-|.||+
T Consensus 237 ~amdalr~~k~akk~d~ 253 (445)
T KOG2891|consen 237 QAMDALRGMKLAKKGDD 253 (445)
T ss_pred HHHHHHhcchHHhhcCC
Confidence 56666667777777765
No 126
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=66.38 E-value=55 Score=33.62 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=8.4
Q ss_pred ccccCCCCeeEeeeeeE
Q 019425 31 RSRANPNPKFSERRGLV 47 (341)
Q Consensus 31 ~~~~sgnp~v~~t~Gi~ 47 (341)
++++.|.|-+.=..|-+
T Consensus 61 ~~iA~G~~P~~g~d~~i 77 (451)
T PF03961_consen 61 FLIARGKPPVPGKDGRI 77 (451)
T ss_pred EEEEeccCCCCCCCcEE
Confidence 34455555555444444
No 127
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.08 E-value=67 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 259 EIMRKKFKEIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
..|+.++-+||....+.....+++|..|+-||
T Consensus 42 ~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 42 QQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888777777888888888876
No 128
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.01 E-value=1.9e+02 Score=33.76 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=4.3
Q ss_pred hHhHHHHHHhH
Q 019425 283 ILDLEEQIRDL 293 (341)
Q Consensus 283 i~dL~EQlrDL 293 (341)
|.+|+.+|.+|
T Consensus 773 I~~l~~~i~~L 783 (1201)
T PF12128_consen 773 IQQLKQEIEQL 783 (1201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 129
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.84 E-value=1.1e+02 Score=28.24 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019425 192 LATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~ 213 (341)
+..-|+..+.+-++.|.++++.
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~ 94 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANEL 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778788888777777654
No 130
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.61 E-value=1.3e+02 Score=28.74 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhhhcc---cHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 019425 198 TQRQYYESLLAEAKSKRESL---IPETVE--KAVASKMQDIQNELDICEEAKKAVADVNSKLIK-------NQEIMRKKF 265 (341)
Q Consensus 198 sQR~yyE~~l~~~~~~~~~~---i~~~~e--k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~-------nq~~~~~k~ 265 (341)
-.+.=||.+|..++.+.... +....+ ..+..+++.++..-..|......+.+.+..|.. .+..+..++
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666665543321 111111 122334444444434444444444445555533 333344444
Q ss_pred HHHHHHH---HHHHHHHHHHhHhHHHHHHhHhH
Q 019425 266 KEIEERE---ITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 266 ~~lee~~---~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
.+++... ......++.+...|+.++...--
T Consensus 85 ~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 85 REAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 23344556667777776654433
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.60 E-value=84 Score=30.71 Aligned_cols=15 Identities=20% Similarity=0.700 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 250 VNSKLIKNQEIMRKK 264 (341)
Q Consensus 250 ln~~L~~nq~~~~~k 264 (341)
+++.+...++.+..+
T Consensus 92 ~~~~I~~r~~~l~~r 106 (265)
T COG3883 92 LKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.44 E-value=72 Score=31.92 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
.+.-|...|++|..|+...+-|-+.|+.....++.++.++.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777777666666666655555555544443
No 133
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=65.43 E-value=57 Score=32.63 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee 270 (341)
.+.++|..+++-|.+|-+.|..+|+-=....+.+...+.+|||
T Consensus 7 N~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 7 NQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665555555566666666655
No 134
>PRK03918 chromosome segregation protein; Provisional
Probab=65.00 E-value=2e+02 Score=31.68 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAK 211 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~ 211 (341)
.+-.++..|+..+..+.
T Consensus 166 ~~~~~~~~~~~~~~~l~ 182 (880)
T PRK03918 166 NLGEVIKEIKRRIERLE 182 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444554444443
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=64.94 E-value=2.3e+02 Score=31.55 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 260 IMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
.++..+.+|..|+.++..-.++-+..+-+--|-|.-.|++
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~ 648 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEA 648 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 3444455555554444433333334444444444444443
No 136
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=64.21 E-value=40 Score=27.25 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 258 QEIMRKKFKEIEEREITSLR-LRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 258 q~~~~~k~~~lee~~~~~~~-~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
...|+++++.|+.+..++.. +.-+-|..+.=-..+|+.||.+-..
T Consensus 17 iae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 17 IAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34566677777665433221 1112233333344567777766443
No 137
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=64.15 E-value=1.6e+02 Score=29.42 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 177 FNSKVEAIVDEYNRLLATQLETQRQYYESL 206 (341)
Q Consensus 177 ~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~ 206 (341)
...++.++..+ +..|..+|+.=|.---.+
T Consensus 25 l~~~~~sL~qe-n~~Lk~El~~ek~~~~~L 53 (310)
T PF09755_consen 25 LRKRIESLQQE-NRVLKRELETEKARCKHL 53 (310)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 45678888877 456677776655443333
No 138
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=64.13 E-value=2.4e+02 Score=31.50 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=8.0
Q ss_pred cccccccCcccccc
Q 019425 21 GFCTVSSTATRSRA 34 (341)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (341)
+|.+|....+++|+
T Consensus 9 nf~s~~~~~~i~f~ 22 (1179)
T TIGR02168 9 GFKSFADPTTINFD 22 (1179)
T ss_pred CccccCCCeeEEec
Confidence 46666544456665
No 139
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.04 E-value=70 Score=35.57 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhh
Q 019425 199 QRQYYESLLAEAKSK 213 (341)
Q Consensus 199 QR~yyE~~l~~~~~~ 213 (341)
...=+|..|+++.++
T Consensus 509 ~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 509 FKEEINVLIEKLSAL 523 (771)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333467777776654
No 140
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.71 E-value=1.3e+02 Score=31.34 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=8.3
Q ss_pred HHHHhHhHHHHHHhH
Q 019425 279 RDATILDLEEQIRDL 293 (341)
Q Consensus 279 k~~~i~dL~EQlrDL 293 (341)
.+.++++|++++..|
T Consensus 150 ~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 150 AERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666666555
No 141
>PRK00106 hypothetical protein; Provisional
Probab=63.55 E-value=2.1e+02 Score=30.61 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=6.2
Q ss_pred CCcCCcEEeecC
Q 019425 310 DGIKGGTVLPVS 321 (341)
Q Consensus 310 ~ei~~Gti~~~~ 321 (341)
+-+.+-||.+++
T Consensus 219 ~~~~e~tvs~v~ 230 (535)
T PRK00106 219 EYVTEQTITTVH 230 (535)
T ss_pred hhhhhheeeeEE
Confidence 345566665443
No 142
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.46 E-value=2.6e+02 Score=32.95 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=8.2
Q ss_pred HHhHhHHHHHHhHhHhh
Q 019425 281 ATILDLEEQIRDLTVYI 297 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~l 297 (341)
.+|.++++++.+|.-.+
T Consensus 902 ~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 902 REIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHhhhhhHHH
Confidence 44555555555554333
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.37 E-value=79 Score=32.83 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 019425 232 DIQNELDICE 241 (341)
Q Consensus 232 ~l~~kl~kl~ 241 (341)
+|+..|.+++
T Consensus 63 kL~~~lk~~e 72 (420)
T COG4942 63 KLEKQLKSLE 72 (420)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 144
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=63.15 E-value=13 Score=32.08 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=17.1
Q ss_pred HHhHhHHHHHHhHhHhhhh
Q 019425 281 ATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~lea 299 (341)
+++.+|+..+|||-++|+|
T Consensus 105 ~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 105 KEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999987
No 145
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.79 E-value=1e+02 Score=26.64 Aligned_cols=14 Identities=14% Similarity=0.378 Sum_probs=7.4
Q ss_pred HHHhHhHHHHHHhH
Q 019425 280 DATILDLEEQIRDL 293 (341)
Q Consensus 280 ~~~i~dL~EQlrDL 293 (341)
++++.+|++.|++.
T Consensus 97 ~e~l~eLq~~i~~~ 110 (119)
T COG1382 97 QERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 146
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=62.67 E-value=1e+02 Score=26.72 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 261 MRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 261 ~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.+..++++-.+.+...+..+++|.+.++.|-++
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777777777776655
No 147
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.59 E-value=55 Score=33.63 Aligned_cols=66 Identities=21% Similarity=0.417 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 228 SKMQDIQNELDICEEAKKAVA-DVNSKLIK--NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~--nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+..+++.+++.+..+++.+. ++.+...+ +.+.+..+.+++.+ .++..++++.++++++.+++..|
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE----EIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455556666665554432 22221111 12234444443333 34555567788888888877755
No 148
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=62.00 E-value=53 Score=31.55 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 259 EIMRKKFKEIEEREITS 275 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~ 275 (341)
+-++.++.+||++....
T Consensus 89 DRFR~Rn~ELE~elr~~ 105 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQ 105 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777777765433
No 149
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.96 E-value=99 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 250 VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 250 ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
+...|.+..+....+++.++.+. ....+++.+++.+||.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~----~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQE----KKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555432 233456667777777664
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=61.67 E-value=1.6e+02 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.151 Sum_probs=8.8
Q ss_pred HHHhhhhcCCceeeeccccE
Q 019425 106 AVRHWKDTQHWYSLDLRTQQ 125 (341)
Q Consensus 106 a~~H~~et~H~~am~l~t~r 125 (341)
+..+-..-+|-.+|--+=.+
T Consensus 109 ~~e~v~qLrHeL~~kdeLL~ 128 (306)
T PF04849_consen 109 ALEQVEQLRHELSMKDELLQ 128 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554433333
No 151
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=61.49 E-value=1.4e+02 Score=27.73 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 185 VDEYNRLLATQLETQRQYYESLLAEAKSKRESLI----PETVEK------AVASKMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 185 ~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i----~~~~ek------~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
..||+.++.+.|.++-. |...+.+..+++-..+ ...+.+ .++.|+..|+..++..-..+..-.+-|..|
T Consensus 34 TEEFSa~IG~vLd~yL~-yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~ 112 (189)
T TIGR02132 34 REEFSALMGNVLDLNLF-YQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPAL 112 (189)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 36888888888877653 5555555544432110 111111 234555555555554443343333445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 255 IKNQEIMRKKFKEIEEREITSLRL 278 (341)
Q Consensus 255 ~~nq~~~~~k~~~lee~~~~~~~~ 278 (341)
......++.+++.++++....+.+
T Consensus 113 ~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 113 KKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555443
No 152
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.44 E-value=1.6e+02 Score=35.92 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 263 KKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 263 ~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
.++++|+.....+.+..+.++.++.+=..|+-+
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~ 837 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEK 837 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555544444444444444444444433
No 153
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.41 E-value=93 Score=32.95 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 019425 186 DEYNRLLATQLE 197 (341)
Q Consensus 186 ~EY~~LLtSQLE 197 (341)
+-+.|+.-+|.|
T Consensus 289 ~afv~~~~~q~e 300 (508)
T KOG3091|consen 289 LAFVYLSVAQTE 300 (508)
T ss_pred hhhhccCHHHHH
Confidence 344555555554
No 154
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.63 E-value=1.9e+02 Score=29.13 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 253 KLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 253 ~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.|..-.+.|..-+..+++...+-.+.....+..|++.|.+|
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455666666666655555555555666666666554
No 155
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.62 E-value=1.5e+02 Score=27.83 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.8
Q ss_pred HHHHhHhHHHHHH
Q 019425 279 RDATILDLEEQIR 291 (341)
Q Consensus 279 k~~~i~dL~EQlr 291 (341)
...+|.+|++.|.
T Consensus 202 Le~~id~le~eL~ 214 (237)
T PF00261_consen 202 LEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 156
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=60.36 E-value=27 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ 289 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQ 289 (341)
......|+.||.++..-...+.. +....+.|...++.++++.. .+.+-+.+++++
T Consensus 27 ~~~~~~lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i~----~k~~~L~~~~~~ 81 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQIR----KKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 34445666677766554444333 44456778888888877643 333455555554
No 157
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.29 E-value=2.2e+02 Score=30.28 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAV 247 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~ 247 (341)
..+.++..+++.+.++...+
T Consensus 383 e~leel~e~leeie~eq~ei 402 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKL 402 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 158
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.85 E-value=1e+02 Score=34.25 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 019425 198 TQRQYYESLLAEAKSK 213 (341)
Q Consensus 198 sQR~yyE~~l~~~~~~ 213 (341)
.+..=+|.+|.++.++
T Consensus 513 ~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 513 EDKEKLNELIASLEEL 528 (782)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3444577777777654
No 159
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.67 E-value=2.4e+02 Score=31.90 Aligned_cols=11 Identities=55% Similarity=0.685 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 019425 192 LATQLETQRQY 202 (341)
Q Consensus 192 LtSQLEsQR~y 202 (341)
|..|||-||.-
T Consensus 373 lekqLerQRei 383 (1118)
T KOG1029|consen 373 LEKQLERQREI 383 (1118)
T ss_pred HHHHHHHHHHH
Confidence 55666776654
No 160
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.24 E-value=1.3e+02 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEA 210 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~ 210 (341)
+.+..+..+ ..-|..||.+.+...-.+-+++
T Consensus 72 eel~~ld~e-i~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 72 EELAELDAE-IKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555 4455666665555554444433
No 161
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=59.03 E-value=2.1e+02 Score=29.02 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 229 KMQDIQNELDICEEAK----KAVADVNSKLIK----------NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~----~~~~~ln~~L~~----------nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
.+.++..++.++++|. .+...-|+.+.. +.+.++.+|..||. .++..+.+-.+|.+-++|+-
T Consensus 251 E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~Lek----LcRALq~ernel~~~~~~~e 326 (391)
T KOG1850|consen 251 EMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEK----LCRALQTERNELNKKLEDLE 326 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHhccccHHHHHHHHh
Confidence 4455555666666652 333445555432 23344555554443 45555666788888899988
Q ss_pred HhhhhHHHHhcc
Q 019425 295 VYIEAQKTLTNM 306 (341)
Q Consensus 295 f~leaq~ki~~~ 306 (341)
.-+.++......
T Consensus 327 ~~v~~k~~~~~l 338 (391)
T KOG1850|consen 327 AQVSAKNAMKDL 338 (391)
T ss_pred cccchhhhhhhh
Confidence 888886655543
No 162
>PRK11020 hypothetical protein; Provisional
Probab=58.95 E-value=88 Score=26.94 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAV 247 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~ 247 (341)
...++.|.++||+|...+..+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887655443
No 163
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=58.81 E-value=82 Score=27.49 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHhHhHHHHHHhHhHhhhhHHHHhccCCCCCcCCcEEe
Q 019425 280 DATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 318 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~leaq~ki~~~~~~~ei~~Gti~ 318 (341)
++++.++.|+.+-|.|-++.-+.+ +.++||..|+|-
T Consensus 66 ~~e~~~r~e~k~~l~~ql~qv~~L---~lgsEv~qg~vE 101 (131)
T PF11068_consen 66 EQEKQERLEQKNQLLQQLEQVQKL---ELGSEVVQGQVE 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----TT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCEEeeeeeE
Confidence 345667778888888877655555 456789999884
No 164
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.61 E-value=2.4e+02 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 191 LLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAK 244 (341)
Q Consensus 191 LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~ 244 (341)
.|.+|+.-||.-|+..-+.+.. .+..++.||.+...+.+|+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~-------------~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQE-------------KELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 5667777777766655444332 1234555555555555444
No 165
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.34 E-value=72 Score=24.47 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=6.5
Q ss_pred HhHhHHHHHHhHhH
Q 019425 282 TILDLEEQIRDLTV 295 (341)
Q Consensus 282 ~i~dL~EQlrDLmf 295 (341)
+|..|+.|++.|.-
T Consensus 33 ~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 33 QIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544443
No 166
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.19 E-value=1.5e+02 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
+...+..|+.++..+..+.+.....++.|.+....++-.+..+|++
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666655555555544444
No 167
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=58.01 E-value=67 Score=32.24 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
++..|-..|.++.+|+. .+-+.|...|+.+.+||..|++++.-+++++ ++|+-|-|.
T Consensus 9 ri~~li~~la~~~~~~e---~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~----~~~~~qyre 65 (328)
T PF15369_consen 9 RIANLIKELARVSEEKE---VTEERLKAEQESFEKKIRQLEEQNELIIKER----EDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHH
Confidence 44555556666666663 3456677888888888888888877666554 455555554
No 168
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.82 E-value=2.8e+02 Score=30.19 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~ 211 (341)
+++...+++....|.-+++.=-.||+..+..-+
T Consensus 57 ~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k 89 (611)
T KOG2398|consen 57 EAMAKSHLELSRELQDLIKDVAKYYAEQLKTRK 89 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888777777777765544
No 169
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.78 E-value=1.3e+02 Score=27.55 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEA 243 (341)
Q Consensus 229 k~~~l~~kl~kl~~E 243 (341)
++++|+.++..+.+|
T Consensus 111 ~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 111 ELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 170
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.65 E-value=95 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
++-..|.+..+.....++.++... +....++.+++.+++.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~----~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQL----KYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 444555555555555554444432 2333445555555544
No 171
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.44 E-value=1.9e+02 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee 270 (341)
..++..++.+|+.++.|+..+.++-+.|......++++..+|+.
T Consensus 162 e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 34555566666666666666665555555555556666655554
No 172
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.36 E-value=1.3e+02 Score=32.35 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-cccHHHHHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 019425 191 LLATQLETQRQYYESLLAEAKSKRE-SLIPETVEKAVA------SKMQDIQNELDICEEAKKA----VADVNSKLIKNQE 259 (341)
Q Consensus 191 LLtSQLEsQR~yyE~~l~~~~~~~~-~~i~~~~ek~~~------~k~~~l~~kl~kl~~E~~~----~~~ln~~L~~nq~ 259 (341)
=+..+++..+.+|..++.++..+.+ .++...++.-.. ..+++...+++++.+|.+. ++.+.+.|....+
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~ 247 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKK 247 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3577888899999988888853221 112222221111 1344455566666555433 5566666777777
Q ss_pred HHHHHHHHHHH
Q 019425 260 IMRKKFKEIEE 270 (341)
Q Consensus 260 ~~~~k~~~lee 270 (341)
..+..+.+++.
T Consensus 248 ~~~~~~~~lk~ 258 (555)
T TIGR03545 248 QLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHh
Confidence 77776666654
No 173
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=56.35 E-value=1.7e+02 Score=27.07 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------ccHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRES------LIPE--------TVEKAVASKMQDIQNELDICEEAK 244 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~------~i~~--------~~ek~~~~k~~~l~~kl~kl~~E~ 244 (341)
+-+|.+..--...|.++.+.=..|++..+.+++..... .+.. .-.+.+...+..++.++....+.+
T Consensus 25 ~t~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 104 (208)
T PF14644_consen 25 ETFEQCADNLVQKLQSYQEQADEYHNSCLQELRNQVERLEELLPKVPELVFESLLKRHWQKLCEAMKAIQEEFEQQQKQW 104 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666667888888777754321 0111 111233444555555555555555
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 245 KAVADVNSKLI-------KNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 245 ~~~~~ln~~L~-------~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
...+.-|+... .|...+..-.+..++|.++.......--..|.+.+++.
T Consensus 105 ~~~k~~h~~~LrP~LghP~~~~eL~~L~~~E~~R~~~~~~~I~~~~~~l~~~~~~~ 160 (208)
T PF14644_consen 105 EQQKDQHEQQLRPNLGHPDNRQELESLCEREEKRQKEHQEAIQNFWEKLLEEVRKE 160 (208)
T ss_pred HHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555532 23344444444334444444333333333444444443
No 174
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.14 E-value=1.8e+02 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 265 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~ 265 (341)
.+++.++.+|..++.++..+++.|..+....+.....+
T Consensus 624 ~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~ 661 (769)
T PF05911_consen 624 NQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444333333333
No 175
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=55.94 E-value=1.8e+02 Score=27.36 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 181 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEA 243 (341)
Q Consensus 181 ie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E 243 (341)
.++-..||.-+|..-+||=|.-|-...++.... +..|++.+++ ...-+.++++++.+-..+
T Consensus 101 ~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~R-e~~iak~m~K-~pq~~a~~~a~~~k~e~~ 161 (225)
T KOG4848|consen 101 FNNAKKEYKELLKKMRESLRILYTKEPEKFTFR-EAEIAKNMKK-YPQTLAKYEASLVKQEQE 161 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH-hHHHHHHHHHHHHHhHHH
Confidence 467778999999999999888887766665532 2334443332 223334445555443333
No 176
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=55.82 E-value=94 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 247 VADVNSKLIKNQEIMRKKFKEIEEREI----TSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~~lee~~~----~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
+.+|...|...|...-.-+-+.|..+. .......++++||+-||-|-..-|+
T Consensus 121 m~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~ 176 (179)
T PF14723_consen 121 MMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLR 176 (179)
T ss_pred HHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566555544333322222222 2223345678888888888766554
No 177
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.69 E-value=52 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=11.2
Q ss_pred HHhHhHHHHHHhHhHhhh
Q 019425 281 ATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~le 298 (341)
+.|++|++-++|||---|
T Consensus 28 ~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 28 ESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666777777765433
No 178
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=55.67 E-value=1.5e+02 Score=26.34 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019425 192 LATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~ 213 (341)
+..-|+..+.+..+.|..+++.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~ 65 (174)
T PRK07352 44 LGKILEERREAILQALKEAEER 65 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776653
No 179
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.65 E-value=62 Score=34.11 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=9.0
Q ss_pred HHHHHhHhHHHHH
Q 019425 278 LRDATILDLEEQI 290 (341)
Q Consensus 278 ~k~~~i~dL~EQl 290 (341)
.++.+++.|++|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 4456677788887
No 180
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=55.40 E-value=75 Score=32.58 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHhHhHHHHHHhHhHhh
Q 019425 275 SLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..+++..++++++.+++..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 84 ELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555667778888888877755
No 181
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.31 E-value=1.7e+02 Score=26.81 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHhHhHHHHHH
Q 019425 281 ATILDLEEQIR 291 (341)
Q Consensus 281 ~~i~dL~EQlr 291 (341)
..+.-|+.|+.
T Consensus 177 ~~~~ql~~~l~ 187 (189)
T PF10211_consen 177 KQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHh
Confidence 44555555554
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.09 E-value=2e+02 Score=33.96 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 274 TSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 274 ~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
..+..+.+++..|+..|+-+.-+|..
T Consensus 1724 ~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555666777777777777766644
No 183
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=54.89 E-value=2.7e+02 Score=31.55 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=8.6
Q ss_pred hHHHHHHhHhHhh
Q 019425 285 DLEEQIRDLTVYI 297 (341)
Q Consensus 285 dL~EQlrDLmf~l 297 (341)
.|+..-||-|.-+
T Consensus 1002 ~~Eqer~D~~la~ 1014 (1259)
T KOG0163|consen 1002 QLEQERRDHELAL 1014 (1259)
T ss_pred HHHHHHHHHHHHH
Confidence 3666677877755
No 184
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=54.69 E-value=72 Score=24.89 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHhHhHHHHHHhHhH
Q 019425 277 RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf 295 (341)
.-+...|.||+.-|.|||-
T Consensus 44 DDM~~riDDLEKnIaDLm~ 62 (73)
T KOG4117|consen 44 DDMSSRIDDLEKNIADLMT 62 (73)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 3445679999999999995
No 185
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.52 E-value=3e+02 Score=29.69 Aligned_cols=9 Identities=56% Similarity=0.604 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 019425 202 YYESLLAEA 210 (341)
Q Consensus 202 yyE~~l~~~ 210 (341)
+||.-|..+
T Consensus 89 ~ye~El~~a 97 (546)
T KOG0977|consen 89 KYEAELATA 97 (546)
T ss_pred HhhhhHHHH
Confidence 444444433
No 186
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=54.37 E-value=2.3 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=25.3
Q ss_pred ccccccCccccccCCCCeeEeeeeeEEeccCCCCCC-----CCCCCCC
Q 019425 22 FCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQSY-----QQNPNSR 64 (341)
Q Consensus 22 ~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~s-----~~~pv~r 64 (341)
.|+|+- -+|..++..+...-| |+|+..+... ..+|++|
T Consensus 2 ~C~IC~---~~~~~~~~~~~l~C~--H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICL---EEFEDGEKVVKLPCG--HVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTT---CBHHTTSCEEEETTS--EEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCC---hhhcCCCeEEEccCC--CeeCHHHHHHHHHhCCcCCccC
Confidence 578883 457678888877766 9999887532 3555544
No 187
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=54.35 E-value=1.2e+02 Score=33.69 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHH
Q 019425 249 DVNSKLIK--NQEIMRKKFKEIEER 271 (341)
Q Consensus 249 ~ln~~L~~--nq~~~~~k~~~lee~ 271 (341)
++|++|.. |...++.|++.|.+.
T Consensus 519 Efnkkl~ea~n~p~lk~Kle~Lk~~ 543 (762)
T PLN03229 519 EFNKRLSRAPNYLSLKYKLDMLNEF 543 (762)
T ss_pred HHHHhhhcccccHHHHHHHHHHHHH
Confidence 56666655 444566666555443
No 188
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.28 E-value=1.6e+02 Score=31.96 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
..++-+|++.|.++..++...+.-|+.|
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665555554444444433
No 189
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.22 E-value=1e+02 Score=23.94 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKE 267 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~ 267 (341)
......|+.+|+.+......-...|+.|...-+....++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888877777677777777765555444443
No 190
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.20 E-value=2.3e+02 Score=28.06 Aligned_cols=6 Identities=33% Similarity=0.191 Sum_probs=3.0
Q ss_pred CCcEEe
Q 019425 313 KGGTVL 318 (341)
Q Consensus 313 ~~Gti~ 318 (341)
.=|||.
T Consensus 149 ~fGTIN 154 (314)
T PF04111_consen 149 PFGTIN 154 (314)
T ss_dssp TEEEET
T ss_pred CeeeEC
Confidence 445553
No 191
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=54.18 E-value=1.4e+02 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.360 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019425 251 NSKLIKNQEIMRKKFK 266 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~ 266 (341)
|+.|.+..+.|+.+++
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 192
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.16 E-value=1e+02 Score=24.09 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRK 263 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~ 263 (341)
.+.-|+.+++.|+++...+.+-|..|...-..++.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444443333333
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.85 E-value=71 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhHHHHHHhHhHhh
Q 019425 252 SKLIKNQEIMRKKFKEIEEREITSLRL----RDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 252 ~~L~~nq~~~~~k~~~lee~~~~~~~~----k~~~i~dL~EQlrDLmf~l 297 (341)
.-|......+..+++.++.++...... -.+++..++.....+.-.+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555433321 1234444444444443333
No 194
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=53.35 E-value=1.1e+02 Score=33.40 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH-HHHHHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIKNQEI-----------MRKKFKEIE-EREITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~-----------~~~k~~~le-e~~~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
.+|++++.++++|++.++. +...+.|+. .++++...| .|.--......++.-+|+|-||= -|
T Consensus 353 ~Klee~i~elEEElk~~k~--ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrW----TE 426 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKA--EAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRW----TE 426 (832)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhH----HH
Confidence 4667788888888776652 223332221 234443332 11111222345678889998873 33
Q ss_pred hHHHHhccCCCCCcCCcEEe
Q 019425 299 AQKTLTNMTDSDGIKGGTVL 318 (341)
Q Consensus 299 aq~ki~~~~~~~ei~~Gti~ 318 (341)
.+..-...+.-++-+-|+|+
T Consensus 427 MiRAsre~p~vqeKK~s~IW 446 (832)
T KOG2077|consen 427 MIRASRENPAVQEKKRSSIW 446 (832)
T ss_pred HHHHhhcCchhhhhccccHH
Confidence 33333333334556667764
No 195
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.07 E-value=1.8e+02 Score=33.70 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhHhHHHHHHh
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE-----------EREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le-----------e~~~~~~~~k~~~i~dL~EQlrD 292 (341)
+++..+++..+..|++++++++.++..+.+...-...|.-++.++. .+....++...+.+.+++.||.+
T Consensus 680 ~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 680 KQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-hHhhhhHHHHh
Q 019425 293 L-TVYIEAQKTLT 304 (341)
Q Consensus 293 L-mf~leaq~ki~ 304 (341)
. +.+.+.+.+++
T Consensus 760 ~~~~~k~~~~~i~ 772 (1174)
T KOG0933|consen 760 KERALKKCEDKIS 772 (1174)
T ss_pred HHHHHHHHHHHHH
No 196
>PLN02939 transferase, transferring glycosyl groups
Probab=53.00 E-value=2.2e+02 Score=32.73 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITS 275 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~ 275 (341)
...++|+.|+++++.-++... +.+-=..+.+.++.|++.++++.++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKEAN-VSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred ccchHHHHHHHHHHHHHHHhh-HhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344667777777765443321 11212234556667777777766533
No 197
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=52.85 E-value=2e+02 Score=27.03 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 189 NRLLATQLETQRQYYESLLAEAKSKRESL-IPETVEKAVASKMQDIQNELDICEEAKKA 246 (341)
Q Consensus 189 ~~LLtSQLEsQR~yyE~~l~~~~~~~~~~-i~~~~ek~~~~k~~~l~~kl~kl~~E~~~ 246 (341)
..||--+||+....|......+....... -++..-+-++.+.+++..+.+.+...++.
T Consensus 13 i~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 13 IQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677778876666665555554321110 11111233455566666665555544433
No 198
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=52.81 E-value=1.2e+02 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.|-..|.+....+-.+++...++ .....++++..|+.++..|.--+
T Consensus 50 ~l~~~L~~~e~~ll~~l~~~~~~---~~~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 50 ELRNALNKRKKQLLEDLEEQKEN---KLKVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333322 23333444555555554444333
No 199
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=52.72 E-value=3.1e+02 Score=29.03 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAK 211 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~ 211 (341)
+.+..+..|+..|.+..
T Consensus 208 ~~~~~~~~~~~~leeae 224 (522)
T PF05701_consen 208 EREQDAEEWEKELEEAE 224 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555444443
No 200
>PLN02678 seryl-tRNA synthetase
Probab=52.55 E-value=88 Score=32.64 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=16.0
Q ss_pred HHHHHHHHhHhHHHHHHhHhHhh
Q 019425 275 SLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..++++.+|++++.++|.-|
T Consensus 86 ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 86 EITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556677778888888777644
No 201
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.37 E-value=2.2e+02 Score=31.32 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019425 192 LATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~ 212 (341)
+..+|+..+..++.....+..
T Consensus 187 ~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 187 LVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345677777777776666554
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=52.01 E-value=2.6e+02 Score=30.06 Aligned_cols=24 Identities=8% Similarity=-0.158 Sum_probs=12.5
Q ss_pred hHHHHhhhhcCCceeeeccccEEE
Q 019425 104 GHAVRHWKDTQHWYSLDLRTQQIW 127 (341)
Q Consensus 104 ~Ha~~H~~et~H~~am~l~t~rVW 127 (341)
+|...-+..-+|..++-.+-.+|+
T Consensus 107 ~~~~d~vvql~hels~k~ellr~y 130 (596)
T KOG4360|consen 107 DAPWDRVVQLGHELSRKDELLRGY 130 (596)
T ss_pred cchHHHHHHhhhhhhhhhhhhhee
Confidence 444555555556555555544443
No 203
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=3.1e+02 Score=28.81 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQLETQ 199 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQ 199 (341)
++-+.+..+|=|.--+.|
T Consensus 34 qa~q~dl~~lrtql~~a~ 51 (542)
T KOG0993|consen 34 QAAQDDLGHLRTQLWEAQ 51 (542)
T ss_pred hhhcchHHHHHHHHHHHH
Confidence 344444555444333443
No 204
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.93 E-value=1.5e+02 Score=25.28 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 235 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 235 ~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
..|..+..+...++.--..|....+..+..+...+..........+.+|.+++..+.||.
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444555555555555655555555555666677777777777765
No 205
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=51.81 E-value=1.9e+02 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=8.3
Q ss_pred HHhHhHHHHHHhHhHhh
Q 019425 281 ATILDLEEQIRDLTVYI 297 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~l 297 (341)
+.|.++++++++|.+.+
T Consensus 85 d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 85 DSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554444
No 206
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=51.74 E-value=14 Score=35.65 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hcccHHH-----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKR----ESLIPET-----V-----EKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQ 258 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~----~~~i~~~-----~-----ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq 258 (341)
.|=+|+.|.|||-.|.+..--. ..+++.. . ...+...+--||.++.+|..+++.+..-|+.|.+-|
T Consensus 9 ~svi~~ErIY~e~~l~~~~~~~~~~~q~s~~~~~~~~~~~~~~~~~~~~~E~l~LQrQi~qLt~~lQ~~~~eneklk~~~ 88 (249)
T PF10422_consen 9 KSVIESERIYYEYQLNRAHLVRSIQSQKSFSSSLKTSSTDSDLQSSKLVDETLLLQRQITQLTSQLQSQKQENEKLKELQ 88 (249)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHhhccchhhhcccchhccccccccccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4668899999999775432200 0001100 0 111223333466677777777666666666665444
Q ss_pred HH
Q 019425 259 EI 260 (341)
Q Consensus 259 ~~ 260 (341)
+.
T Consensus 89 K~ 90 (249)
T PF10422_consen 89 KT 90 (249)
T ss_dssp --
T ss_pred HH
Confidence 43
No 207
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=51.56 E-value=1.5e+02 Score=25.27 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019425 193 ATQLET 198 (341)
Q Consensus 193 tSQLEs 198 (341)
...++.
T Consensus 44 ~~~~~~ 49 (202)
T PF01442_consen 44 ESELEE 49 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 208
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.48 E-value=5.2e+02 Score=31.30 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 019425 181 VEAIVDEYNRLLATQLETQ--RQYYESLLAEAK 211 (341)
Q Consensus 181 ie~i~~EY~~LLtSQLEsQ--R~yyE~~l~~~~ 211 (341)
+..-..+|..-|..==.+| |..|..+|....
T Consensus 235 m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~ 267 (1486)
T PRK04863 235 MEAALRENRMTLEAIRVTQSDRDLFKHLITEST 267 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhh
Confidence 3444566766666666666 888888887644
No 209
>PRK11519 tyrosine kinase; Provisional
Probab=51.36 E-value=3.6e+02 Score=29.51 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019425 182 EAIVDEYNRLLATQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~ 214 (341)
+.|..+....=..+......|.+++|.+++++.
T Consensus 251 ~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L 283 (719)
T PRK11519 251 RNYLEQNIERKSEEASKSLAFLAQQLPEVRSRL 283 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444566678888888887764
No 210
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.36 E-value=2.3e+02 Score=30.26 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYESLLAEAKSKRESLIPETVE------KAVASKMQDIQNELDICEEAKKAV 247 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~e------k~~~~k~~~l~~kl~kl~~E~~~~ 247 (341)
|.+-|..|++-+..+|.++..+-+..+.+.++ +.+...+..++.+++.+-.+...+
T Consensus 370 Ls~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~v 431 (531)
T PF15450_consen 370 LSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEV 431 (531)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34456778888888888887765544444333 234556666777777665544433
No 211
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=50.67 E-value=2.1e+02 Score=26.48 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=10.9
Q ss_pred HHHhHhHHHHHHhHhHhhh
Q 019425 280 DATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~le 298 (341)
..++..|++.|..|-..|.
T Consensus 170 ~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 170 QEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655443
No 212
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=50.31 E-value=2.3e+02 Score=26.92 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.6
Q ss_pred HHHHHhHhHhhhhHHHHhc
Q 019425 287 EEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 287 ~EQlrDLmf~leaq~ki~~ 305 (341)
-+|+++|--|++||-...+
T Consensus 198 ~~~~~~L~~lv~AQl~Yh~ 216 (229)
T cd07594 198 ANHLRCLRDFVEAQMTYYA 216 (229)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6799999999999876544
No 213
>PRK01156 chromosome segregation protein; Provisional
Probab=50.10 E-value=4e+02 Score=29.65 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=2.8
Q ss_pred CCCCCc
Q 019425 160 HCGTCE 165 (341)
Q Consensus 160 ~~g~~~ 165 (341)
-|+.|.
T Consensus 454 ~Cp~c~ 459 (895)
T PRK01156 454 VCPVCG 459 (895)
T ss_pred CCCCCC
Confidence 455543
No 214
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=50.03 E-value=3e+02 Score=30.42 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQLETQRQY 202 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~y 202 (341)
|++++.|+ +||-|.|.|-.-
T Consensus 121 esL~LQvs-vLteqVeaQgEK 140 (861)
T KOG1899|consen 121 ESLQLQVS-VLTEQVEAQGEK 140 (861)
T ss_pred hhheehHH-HHHHHHHHhhhh
Confidence 67788775 789999999754
No 215
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=49.88 E-value=3.6e+02 Score=30.20 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=10.6
Q ss_pred HHHHhHhHHHHHHhHhHhhhh
Q 019425 279 RDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~lea 299 (341)
+.+.|..|++...-|---|.+
T Consensus 493 ~ge~i~~L~sE~~~lk~il~~ 513 (961)
T KOG4673|consen 493 KGELITKLQSEENKLKSILRD 513 (961)
T ss_pred hhhHHHHHHHHHHHHHHHhhh
Confidence 344566666555554444433
No 216
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.34 E-value=1.4e+02 Score=30.69 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=8.4
Q ss_pred HHhHhHHHHHHhHhHhhh
Q 019425 281 ATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~le 298 (341)
+++++|++++..|.-.|+
T Consensus 389 ~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 389 EELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555544444333
No 217
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=49.06 E-value=1.5e+02 Score=31.72 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQL---ETQRQYYESLLAEAK 211 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQL---EsQR~yyE~~l~~~~ 211 (341)
-++++|...|..+|+.|+ -+|-.||..+...+.
T Consensus 60 v~V~sI~R~~d~fl~~q~~~a~s~~s~~~t~~~~L~ 95 (552)
T COG1256 60 VNVVSIQRLRDEFLTNQYRNANSQSSYLDTRASQLS 95 (552)
T ss_pred eEEEeeeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345678888888998888 455666665544433
No 218
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.00 E-value=3.3e+02 Score=28.26 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++++-+.+|+.|+-|+.+-+
T Consensus 109 ek~~a~~elr~ei~~lAv~~ 128 (445)
T PRK13428 109 LRAQLTRQLRLELGHESVRQ 128 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777776544
No 219
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.96 E-value=2.9e+02 Score=29.68 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 019425 192 LATQLETQRQ 201 (341)
Q Consensus 192 LtSQLEsQR~ 201 (341)
.+.||.+||-
T Consensus 58 ~~~ql~~lr~ 67 (613)
T KOG0992|consen 58 ESEQLCELRS 67 (613)
T ss_pred HHHHHHHHHh
Confidence 3556666654
No 220
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.92 E-value=62 Score=24.45 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHhHhHHHHHHhH
Q 019425 281 ATILDLEEQIRDL 293 (341)
Q Consensus 281 ~~i~dL~EQlrDL 293 (341)
.++..|+++|..|
T Consensus 53 ~~~~~l~~~l~~L 65 (66)
T PF10458_consen 53 EELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhc
Confidence 3444555555443
No 221
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.73 E-value=2.9e+02 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHhHhHHHHHHhHhHhhhhHHHHhcc
Q 019425 281 ATILDLEEQIRDLTVYIEAQKTLTNM 306 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ki~~~ 306 (341)
..+.+-++-|+|+..++.+-+|+.++
T Consensus 127 ~~~Re~k~~lldl~~v~~~ieKL~k~ 152 (705)
T KOG2307|consen 127 CSNREKKIELLDLIYVLVAIEKLSKM 152 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566688899999999999999987
No 222
>PLN03188 kinesin-12 family protein; Provisional
Probab=48.69 E-value=4.4e+02 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hcccHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKR--ESLIPETVEKA 225 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~--~~~i~~~~ek~ 225 (341)
-..||+-|..=|.+=.+++.+. ..++.+|+..|
T Consensus 1071 r~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~a 1105 (1320)
T PLN03188 1071 RTELDASRALAEKQKHELDTEKRCAEELKEAMQMA 1105 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3446887777776666655432 23344454443
No 223
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=48.62 E-value=1.2e+02 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 260 IMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
....++..+.+..+......+.+|+.|+..|.
T Consensus 25 ~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 25 EANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555566666665544
No 224
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=48.54 E-value=2.5e+02 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=13.2
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-+.+|+.|+.|+.+-+
T Consensus 113 Ek~~a~~~L~~~v~~la~~~ 132 (250)
T PRK14474 113 EKQEFFKALQQQTGQQMVKI 132 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777665
No 225
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=48.51 E-value=2.2e+02 Score=26.75 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHhH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR---LRDATILDLEEQIRDL 293 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~---~k~~~i~dL~EQlrDL 293 (341)
..++..|...+..+...++.+...++.+....+.+..+++.+..+++.+-. -....|.-|+.++-||
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Ddl 177 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDL 177 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHH
Confidence 455666666666666666666666666666666666666666555443311 0112455555555554
No 226
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=48.51 E-value=4.7e+02 Score=29.96 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=4.5
Q ss_pred ccchhHH
Q 019425 100 RYKEGHA 106 (341)
Q Consensus 100 Ry~~~Ha 106 (341)
||...|.
T Consensus 227 Rf~~qf~ 233 (980)
T KOG0980|consen 227 RFHTQFE 233 (980)
T ss_pred HHHHHHH
Confidence 7766655
No 227
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=48.49 E-value=1.9e+02 Score=25.30 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=5.8
Q ss_pred HHHHHHHHH
Q 019425 201 QYYESLLAE 209 (341)
Q Consensus 201 ~yyE~~l~~ 209 (341)
.||+.++.+
T Consensus 39 k~F~~LVk~ 47 (132)
T PF05597_consen 39 KVFEALVKE 47 (132)
T ss_pred HHHHHHHHH
Confidence 467777654
No 228
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=48.26 E-value=1.1e+02 Score=26.57 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=8.8
Q ss_pred HHhHhHhhhhHHHHhccCCCCCcCCcEEeecCCCC
Q 019425 290 IRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQ 324 (341)
Q Consensus 290 lrDLmf~leaq~ki~~~~~~~ei~~Gti~~~~~~~ 324 (341)
|+|.|---+..++|.++-..+ .+++|++.|.+.
T Consensus 50 isdkIdkCeC~Kelle~Lk~q--~d~~iip~~~~~ 82 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQ--PDKQIIPSPEED 82 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT----------------
T ss_pred HHHHHHhchhhHHHHHHHhcC--CCCCcCCCCCCC
Confidence 455555555555555542111 266777555443
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.17 E-value=2.2e+02 Score=26.03 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
...++.++..+......+...-..|......+..++.+++
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333344444444444444443
No 230
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=48.07 E-value=47 Score=27.77 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=4.2
Q ss_pred HHhHhHHHHH
Q 019425 281 ATILDLEEQI 290 (341)
Q Consensus 281 ~~i~dL~EQl 290 (341)
++|.+|+++|
T Consensus 90 k~i~~le~~I 99 (100)
T PF04568_consen 90 KEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3344444443
No 231
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=48.01 E-value=1.8e+02 Score=27.09 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 019425 262 RKKFKEIEER 271 (341)
Q Consensus 262 ~~k~~~lee~ 271 (341)
+.+++.++++
T Consensus 100 kae~k~~~e~ 109 (192)
T COG3334 100 KAELKDLEEE 109 (192)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 232
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.76 E-value=1.3e+02 Score=28.64 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=5.0
Q ss_pred HhHhHHHHH
Q 019425 282 TILDLEEQI 290 (341)
Q Consensus 282 ~i~dL~EQl 290 (341)
+-..|++||
T Consensus 201 e~~~Lq~~i 209 (216)
T KOG1962|consen 201 EYSKLQEQI 209 (216)
T ss_pred HHHHHHHHH
Confidence 344566665
No 233
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=47.67 E-value=88 Score=29.08 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQE 259 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~ 259 (341)
...++.+|+.++++++.+.++..++|+...=|.+
T Consensus 180 ~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~e 213 (221)
T PF14335_consen 180 RLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTE 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4567788888888888888888888877755443
No 234
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.26 E-value=2.9e+02 Score=27.21 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 019425 195 QLETQRQYYESLLAEAKSKRE 215 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~~~~ 215 (341)
.....+.|.+..+.+++.+.+
T Consensus 167 ~~~~a~~fl~~ql~~~~~~l~ 187 (362)
T TIGR01010 167 ARKDTIAFAENEVKEAEQRLN 187 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999988887643
No 235
>PF14282 FlxA: FlxA-like protein
Probab=46.75 E-value=34 Score=28.49 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=12.1
Q ss_pred HHHHHHHhHhHHHHHHhHhH
Q 019425 276 LRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf 295 (341)
.+....+|..|+-||.-|..
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777765544
No 236
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=46.54 E-value=2.7e+02 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 248 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 248 ~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
++|.+.|......+.+......+. ...+....++..+++.-..||.+|.
T Consensus 130 qql~~sL~~r~~elk~~~~~~se~--rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 130 QQLLESLNKRHEELKNQVETFSES--RVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555555444333221 1112333456666677677777663
No 237
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.44 E-value=2.6e+02 Score=26.44 Aligned_cols=46 Identities=28% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
.|+.+|+.-|+.+....+....+|..-..+.+....+...+.+...
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~ 237 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQN 237 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555566777767776666666666555443
No 238
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=46.16 E-value=1.3e+02 Score=31.06 Aligned_cols=58 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 237 LDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 237 l~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
|+.+.+|+...++---.|....+.++.+++.-=.-..+.+.+-.=+-+.|+|||.||.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt 319 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT 319 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 239
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.96 E-value=1.1e+02 Score=25.64 Aligned_cols=42 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
+.++..|..++..++.....+-+-|..|+-.-+.++.++.++
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555554444555554443
No 240
>PLN02320 seryl-tRNA synthetase
Probab=45.77 E-value=1.1e+02 Score=32.62 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 228 SKMQDIQNELDICEEAKKAV-ADVNSKLIK-NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~-~~ln~~L~~-nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+..+++.+++.+..|++.+ +++...... ..+.+..+.++ .++.++..++++.++++++.+++..|
T Consensus 100 ~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~----lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 100 ENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKN----LKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666666666443 122221110 11222222222 23334555566777788888877755
No 241
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.71 E-value=3.5e+02 Score=33.29 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
+.+..++.+++++..++.+..+--+.|.++.+..+..+..|+++..
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~ 713 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNK 713 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666677777777777766666554
No 242
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=45.69 E-value=1.3e+02 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHhHh
Q 019425 256 KNQEIMRKKFKEIEEREITSLR-LRDATILDLEEQIRDLT 294 (341)
Q Consensus 256 ~nq~~~~~k~~~lee~~~~~~~-~k~~~i~dL~EQlrDLm 294 (341)
..+....++++.++|.++..+. .+.++-.....|..|..
T Consensus 259 aeL~acEEkl~kmeE~Qa~~l~~aR~~errkvraqf~dfs 298 (311)
T PF04642_consen 259 AELNACEEKLKKMEEEQAEMLRAARTEERRKVRAQFHDFS 298 (311)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344556677777776665554 34456667778888863
No 243
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=45.64 E-value=2.1e+02 Score=25.18 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=10.5
Q ss_pred HHhHhHHHHHHhHhHhhh
Q 019425 281 ATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~le 298 (341)
.+.+||=+|=.||+-|--
T Consensus 96 ~qLE~lm~qHKdLwefh~ 113 (134)
T PF15233_consen 96 EQLEDLMGQHKDLWEFHM 113 (134)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455666666666665544
No 244
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.47 E-value=4.5e+02 Score=31.14 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 019425 245 KAVADVNSKLI 255 (341)
Q Consensus 245 ~~~~~ln~~L~ 255 (341)
..+...|+.++
T Consensus 598 ~~ls~~~~~~~ 608 (1317)
T KOG0612|consen 598 SKLSKENKKLR 608 (1317)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 245
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.31 E-value=1.4e+02 Score=27.21 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 278 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~ 278 (341)
.++....+++.|...++.-|+.|.+..+.+.+++..+++.....+.-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666677777776666666666666666555443
No 246
>PRK04406 hypothetical protein; Provisional
Probab=45.23 E-value=1.5e+02 Score=23.32 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAV 247 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~ 247 (341)
.++.++..|+....+.
T Consensus 8 ~le~Ri~~LE~~lAfQ 23 (75)
T PRK04406 8 QLEERINDLECQLAFQ 23 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666555544
No 247
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.23 E-value=3.1e+02 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 254 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 254 L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
|.+..+.+..+...+.+...+..+..++++..|+|.+.++|-
T Consensus 357 lke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 357 LKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555565555555555555566777888888777653
No 248
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.16 E-value=3.8e+02 Score=29.87 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 246 AVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 246 ~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+++-|=.|++-...++.---+.| -.+-.++-..+++.-|.-|+.|++---
T Consensus 101 elEeENislQKqvs~Lk~sQvefE-~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFE-GLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665555544333333 233445566788888888888887543
No 249
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.09 E-value=5.6e+02 Score=29.89 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=9.2
Q ss_pred HhHhHHHHHHhHhHhhhh
Q 019425 282 TILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~lea 299 (341)
+|.+|.-++++-+-.|..
T Consensus 444 ~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 250
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.08 E-value=1.8e+02 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 252 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 252 ~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
..|.++.+.....++.++++ +.....++.+++.+++.+.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~----~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQ----EERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443 2334455666677766653
No 251
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=45.07 E-value=3.4e+02 Score=27.31 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=19.5
Q ss_pred CcccceecccCCCCChhhhccccccc
Q 019425 64 RSTCIFVVAVPNYLSSDEFVRFCGSH 89 (341)
Q Consensus 64 r~~~lcilavP~~~t~~dlc~fC~~~ 89 (341)
.++...+-++|+.++++-+-+--|+.
T Consensus 84 ~~ntt~~~gi~~DF~p~KLksGaGe~ 109 (384)
T KOG0972|consen 84 DPNTTFITGIATDFTPAKLKSGAGEN 109 (384)
T ss_pred CCCcccccCCcCCCCHHHhhcCCCCc
Confidence 45555667899999988888777764
No 252
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.96 E-value=2.1e+02 Score=24.88 Aligned_cols=19 Identities=5% Similarity=0.282 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019425 249 DVNSKLIKNQEIMRKKFKE 267 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~ 267 (341)
++++...++....+..+..
T Consensus 82 ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 82 EISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 4444444444444444333
No 253
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=44.83 E-value=2.7e+02 Score=26.19 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019425 192 LATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~ 212 (341)
++.=|+..+.+-++.|.++++
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~ 50 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADT 50 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544
No 254
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.73 E-value=6.2e+02 Score=30.26 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 019425 199 QRQYYESLLAEAKSKRE 215 (341)
Q Consensus 199 QR~yyE~~l~~~~~~~~ 215 (341)
|-.-+|.+|++++.++.
T Consensus 1620 ~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33448888888887654
No 255
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.52 E-value=2.4e+02 Score=25.53 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=11.4
Q ss_pred HHHHHhHhHHHHHHhHh
Q 019425 278 LRDATILDLEEQIRDLT 294 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLm 294 (341)
..++++..|++..++|.
T Consensus 162 ~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566777777777764
No 256
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.46 E-value=1.2e+02 Score=30.89 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Q 019425 186 DEYNRLLATQLE------TQRQYYESLLAEAKSK 213 (341)
Q Consensus 186 ~EY~~LLtSQLE------sQR~yyE~~l~~~~~~ 213 (341)
.+|..|+..--+ --..||+.++....+.
T Consensus 197 ~~F~~l~~~T~~R~~f~~r~~~Yf~~l~~~f~d~ 230 (406)
T PF02388_consen 197 DDFYDLYKETAERKGFSIRSLEYFENLYDAFGDK 230 (406)
T ss_dssp HHHHHHHHHHHHHTT-----HHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHhcCCC
Confidence 345555544333 2357899888887443
No 257
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=44.21 E-value=1.8e+02 Score=23.80 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=5.8
Q ss_pred HHhHhHHHHHHhH
Q 019425 281 ATILDLEEQIRDL 293 (341)
Q Consensus 281 ~~i~dL~EQlrDL 293 (341)
++|.++++||..|
T Consensus 66 ~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 66 QQIDQIEEQVTEL 78 (99)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 258
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.11 E-value=2.3e+02 Score=28.62 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=5.1
Q ss_pred HhHhHHHHHHh
Q 019425 282 TILDLEEQIRD 292 (341)
Q Consensus 282 ~i~dL~EQlrD 292 (341)
.+++|++++.+
T Consensus 69 ~i~~L~~~Ik~ 79 (330)
T PF07851_consen 69 LIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHH
Confidence 34455554443
No 259
>PRK11281 hypothetical protein; Provisional
Probab=44.02 E-value=5.1e+02 Score=30.37 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.0
Q ss_pred HhHhHHHHHHhHh
Q 019425 282 TILDLEEQIRDLT 294 (341)
Q Consensus 282 ~i~dL~EQlrDLm 294 (341)
-+++|..+|.|+-
T Consensus 354 ~~~~l~~~iAdlr 366 (1113)
T PRK11281 354 LIEGLADRIADLR 366 (1113)
T ss_pred ccchHHHHHHHHH
Confidence 4677888888886
No 260
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.95 E-value=4.2e+02 Score=28.15 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=15.2
Q ss_pred hHhHHHHHHhHhHhhhhHHHHhc
Q 019425 283 ILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 283 i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
++++++..+-+..+|+.-..+.+
T Consensus 435 ~~eiQqKnksvsqclEmdk~Lsk 457 (527)
T PF15066_consen 435 MTEIQQKNKSVSQCLEMDKTLSK 457 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhh
Confidence 56666666667777776666654
No 261
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.76 E-value=90 Score=27.10 Aligned_cols=37 Identities=8% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKE 267 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~ 267 (341)
++|++++..|+-|++.++.+|+.|....+++...++.
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999998877777655544
No 262
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=43.53 E-value=2.4e+02 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
..++..-+.+|+.|+-||-.-+-.
T Consensus 110 e~Ek~~Al~elr~eva~Lav~iAs 133 (154)
T PRK06568 110 QNQKSTASKELQDEFCDEVIKLVS 133 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999876644
No 263
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.47 E-value=3.3e+02 Score=26.68 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=5.5
Q ss_pred ecCCceeee
Q 019425 129 YVGDNYVHR 137 (341)
Q Consensus 129 Y~~D~yVhr 137 (341)
|..|+|-.+
T Consensus 74 Y~ADGyAVk 82 (267)
T PF10234_consen 74 YQADGYAVK 82 (267)
T ss_pred HHhhHHHHH
Confidence 667777543
No 264
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.17 E-value=4.1e+02 Score=27.73 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLAT 194 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtS 194 (341)
..++.+.-||..+=.+
T Consensus 38 ~~l~q~q~ei~~~~~~ 53 (420)
T COG4942 38 KQLKQIQKEIAALEKK 53 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666666665443
No 265
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.12 E-value=2.4e+02 Score=25.06 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=8.9
Q ss_pred HHhHhHHHHHHhH
Q 019425 281 ATILDLEEQIRDL 293 (341)
Q Consensus 281 ~~i~dL~EQlrDL 293 (341)
..+..|+|||..|
T Consensus 116 dg~~Gldeqi~~l 128 (155)
T PF06810_consen 116 DGLKGLDEQIKAL 128 (155)
T ss_pred CccccHHHHHHHH
Confidence 3477788887665
No 266
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=42.85 E-value=4e+02 Score=29.51 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~ 211 (341)
.+.|.++.||-. .+-||+|..=.-..+.+++
T Consensus 157 atEEmLQqells--rtsLETqKlDLmaevSeLK 187 (861)
T KOG1899|consen 157 ATEEMLQQELLS--RTSLETQKLDLMAEVSELK 187 (861)
T ss_pred hHHHHHHHHHHh--hhhHHHHHhHHHHHHHHhH
Confidence 445677776643 3678888765555555444
No 267
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.71 E-value=5.4e+02 Score=30.18 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=8.9
Q ss_pred HhHhHHHHHHhHh
Q 019425 282 TILDLEEQIRDLT 294 (341)
Q Consensus 282 ~i~dL~EQlrDLm 294 (341)
.+++|..+|.|+-
T Consensus 334 ~~~~l~~~IAdlR 346 (1109)
T PRK10929 334 KPQQLDTEMAQLR 346 (1109)
T ss_pred ccchhHHHHHHHH
Confidence 4566777777775
No 268
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.44 E-value=1.7e+02 Score=22.98 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
.|-+...+.+..|+.-+..+...
T Consensus 14 ~Lq~~y~~q~~~Wq~sy~~Lq~~ 36 (70)
T PF04899_consen 14 ELQQSYEKQQQEWQSSYADLQHM 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555665555555443
No 269
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.43 E-value=4.4e+02 Score=27.91 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHhHhHHHHHHhHhHhhh
Q 019425 280 DATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~le 298 (341)
+.-+.-|+|||.++---++
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3457889999998866555
No 270
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.08 E-value=4.8e+02 Score=29.73 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=12.1
Q ss_pred HhHhHHHHHHhHhHhhhhH-HHHhcc
Q 019425 282 TILDLEEQIRDLTVYIEAQ-KTLTNM 306 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~leaq-~ki~~~ 306 (341)
.|--|++-..-|-|-|++= .|+++.
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555552 244443
No 271
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.65 E-value=1.8e+02 Score=23.13 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 240 CEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 240 l~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
|.-|...+++-|..|.......+...+.|+.+..... ++-.--+|-||.|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk----~e~~~WQerlrsLL 73 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK----EEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344444555666666665555555555554433222 22234456666554
No 272
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.56 E-value=3.6e+02 Score=26.60 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019425 259 EIMRKKFKEIEEREITSLRLRDATI 283 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~~~i 283 (341)
+.+++.|.+||..+....+.+...|
T Consensus 108 eql~kyiReLEQaNDdLErakRati 132 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATI 132 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhh
Confidence 3455556666665555555554443
No 273
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=41.56 E-value=4.9e+02 Score=28.15 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 279 RDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
...+|++|-.|+-+++..+++-..
T Consensus 452 ~~~~i~~l~~eLse~pinm~~v~~ 475 (570)
T COG4477 452 AGHEIQDLMKELSEVPINMEAVSA 475 (570)
T ss_pred hhhHHHHHHHHHhhcCCcHHHHHH
Confidence 456888888888888888877543
No 274
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=2.2e+02 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 239 ICEEAKKAVADVNSKLIKNQEIMRKKFKE 267 (341)
Q Consensus 239 kl~~E~~~~~~ln~~L~~nq~~~~~k~~~ 267 (341)
++..++..|+.--..|.+|-+.+..++++
T Consensus 250 kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344444444445556666666555544
No 275
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.46 E-value=1.1e+02 Score=25.48 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=4.6
Q ss_pred cCCcEEe
Q 019425 312 IKGGTVL 318 (341)
Q Consensus 312 i~~Gti~ 318 (341)
++.|.|+
T Consensus 78 vk~gEiv 84 (105)
T PRK00888 78 VKPGETF 84 (105)
T ss_pred CCCCCEE
Confidence 5667675
No 276
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=41.45 E-value=2.9e+02 Score=25.51 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 252 SKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 252 ~~L~~nq~~~~~k~~~lee~~~ 273 (341)
-.|...|.....||+.||+++.
T Consensus 130 ~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 130 LRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777778888877664
No 277
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=41.24 E-value=2.4e+02 Score=30.23 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIK 256 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~ 256 (341)
.++++.+++.+..++....+.-+..|-.. .....+. .......+.+...++.+......+. .|-....+
T Consensus 390 ~k~l~k~~l~~~d~~~~~~~~~~~~~~~~------~~~~~~~----~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~ 459 (542)
T PF10079_consen 390 AKKLEKLGLSVEDVFEDGEELLKERWLEE------QDPSEIE----DDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEK 459 (542)
T ss_pred HHHHHHcCCCHHHHhhccHHHHHHHHHHh------cccccHH----HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 45677777777777766665554444211 0111111 1222223334444444443333321 34445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 257 NQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 257 nq~~~~~k~~~lee~~~~~~~~k 279 (341)
|+....+.+..||++..++.+.+
T Consensus 460 ~~~~~~~ql~~Le~k~~~a~~rk 482 (542)
T PF10079_consen 460 NESKILKQLDYLEKKLLKAEKRK 482 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777776665554433
No 278
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.01 E-value=1.9e+02 Score=23.14 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019425 194 TQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 194 SQLEsQR~yyE~~l~~~~~ 212 (341)
..|.....+.+..+..+..
T Consensus 10 ~~l~~~~~~~~~~~~~l~~ 28 (127)
T smart00502 10 TKLRKKAAELEDALKQLIS 28 (127)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3445555555555555543
No 279
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.93 E-value=2.7e+02 Score=24.96 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=16.3
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++++-+.+|+.|+-|+-+-+
T Consensus 134 ~ek~~a~~~l~~~i~~lA~~~ 154 (184)
T PRK13455 134 SAEAAAVKAVRDRAVSVAVAA 154 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667889999999987765
No 280
>PRK10698 phage shock protein PspA; Provisional
Probab=40.87 E-value=3.1e+02 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
...++..++.+.......-..|..+...++.++.+++.+.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444455555555555666665555443
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.74 E-value=3.5e+02 Score=26.32 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=6.1
Q ss_pred HhHhHHHHHHhH
Q 019425 282 TILDLEEQIRDL 293 (341)
Q Consensus 282 ~i~dL~EQlrDL 293 (341)
+|..|..||..|
T Consensus 121 qIa~L~rqlq~l 132 (258)
T PF15397_consen 121 QIANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 282
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=40.63 E-value=2.4e+02 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAK----KAVAD---VNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~----~~~~~---ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
.++.|++|+-++..|+ +.+.+ -|.-|+..|..+...++-+|.++
T Consensus 15 ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 15 EVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665543 11221 24444444455555555555544
No 283
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.55 E-value=1.5e+02 Score=29.51 Aligned_cols=7 Identities=43% Similarity=1.146 Sum_probs=3.2
Q ss_pred CCcEEee
Q 019425 313 KGGTVLP 319 (341)
Q Consensus 313 ~~Gti~~ 319 (341)
.||-++|
T Consensus 114 ~gG~lIP 120 (378)
T TIGR01554 114 DGGVTIP 120 (378)
T ss_pred CCCeeCC
Confidence 4454443
No 284
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.99 E-value=2.6e+02 Score=24.89 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
++....||.+|+.++.|+-+-++.
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888888888664433
No 285
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.68 E-value=2.5e+02 Score=29.98 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.4
Q ss_pred EEEecCCceee
Q 019425 126 IWDYVGDNYVH 136 (341)
Q Consensus 126 VWdY~~D~yVh 136 (341)
++||.+++|--
T Consensus 233 lfdY~~~~Y~~ 243 (622)
T COG5185 233 LFDYFTESYKS 243 (622)
T ss_pred HHHHHHHHHHH
Confidence 57898888853
No 286
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=39.64 E-value=7.2e+02 Score=29.58 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLI 255 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~ 255 (341)
.+.++|.+.+..+.+|++.++..|..+.
T Consensus 508 ~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 287
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=39.48 E-value=53 Score=27.39 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=14.1
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
++.++..+..|++||++|---+
T Consensus 60 l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 60 LKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp TTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777775433
No 288
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.46 E-value=2.6e+02 Score=24.33 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019425 199 QRQYYESLLA 208 (341)
Q Consensus 199 QR~yyE~~l~ 208 (341)
.|.+.-.+|.
T Consensus 62 tKkhLsqRId 71 (126)
T PF07889_consen 62 TKKHLSQRID 71 (126)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 289
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.43 E-value=2.8e+02 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVN 251 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln 251 (341)
++..++.+++.++..++++..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 86 ELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444433
No 290
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.39 E-value=2.5e+02 Score=24.59 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=5.6
Q ss_pred HHHhHhHHHHHH
Q 019425 280 DATILDLEEQIR 291 (341)
Q Consensus 280 ~~~i~dL~EQlr 291 (341)
|.+|..|-.|++
T Consensus 121 d~el~~l~~ql~ 132 (160)
T PF13094_consen 121 DEELLPLLKQLN 132 (160)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 291
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=39.39 E-value=6.5e+02 Score=28.94 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 019425 194 TQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 194 SQLEsQR~yyE~~l~~~~~~~ 214 (341)
.|||+++.|-|++++.++...
T Consensus 567 d~leaa~e~lE~r~~~~e~~~ 587 (984)
T COG4717 567 DQLEAAYEALEGRFAAAEAAM 587 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 589999999999998887643
No 292
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.34 E-value=4.8e+02 Score=27.39 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 019425 190 RLLATQLETQ 199 (341)
Q Consensus 190 ~LLtSQLEsQ 199 (341)
..+.+||+.+
T Consensus 144 le~~~q~da~ 153 (446)
T KOG4438|consen 144 LELRKQLDAK 153 (446)
T ss_pred HHHHHHHHHH
Confidence 3456666666
No 293
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.71 E-value=1.6e+02 Score=31.15 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEA 243 (341)
Q Consensus 229 k~~~l~~kl~kl~~E 243 (341)
+..+|+.+|++++.|
T Consensus 77 kasELEKqLaaLrqE 91 (475)
T PRK13729 77 TAAQMQKQYEEIRRE 91 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555433
No 294
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.43 E-value=2.7e+02 Score=29.35 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=8.8
Q ss_pred eeeeccccCCCCcee
Q 019425 134 YVHRLNQSKADGKLV 148 (341)
Q Consensus 134 yVhrl~q~k~DGKlV 148 (341)
||...-..+.||+..
T Consensus 153 yve~fk~~kv~G~al 167 (575)
T KOG4403|consen 153 YVEAFKAKKVDGKAL 167 (575)
T ss_pred HHHHHHhccCCcccc
Confidence 333333468888865
No 295
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.39 E-value=5.4e+02 Score=27.76 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEE 242 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~ 242 (341)
.++..++.+++++..
T Consensus 428 e~l~~l~~~l~~~~~ 442 (650)
T TIGR03185 428 EELGEAQNELFRSEA 442 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 296
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.34 E-value=2.2e+02 Score=27.72 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 203 YESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 203 yE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
||+++.+-+-+..-..+.+-+ ....++.++...+..|.+|...|+--|+.|+.--+.+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRD-rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARD-RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776644332221222222 2345677777777777777666666666665533333
No 297
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.29 E-value=3.7e+02 Score=25.77 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.9
Q ss_pred HhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 282 TILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
.|.+=-+++++|--|++||-...+
T Consensus 206 ~il~~~e~i~~L~~fv~AQl~Yh~ 229 (242)
T cd07600 206 EVLDNPEPLQLLKELVKAQLAYHK 229 (242)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344447899999999999876544
No 298
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=38.03 E-value=5.1e+02 Score=27.38 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHH
Q 019425 196 LETQRQYYESLLAEAKSKRESLIPETVE 223 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~~~~~~i~~~~e 223 (341)
++.-|+..|.+|..+..++++.|.+-+.
T Consensus 289 ~dqkRqllE~kllhAe~kRd~ni~aiik 316 (672)
T KOG4722|consen 289 KDQKRQLLEAKLLHAEDKRDKNIMAIIK 316 (672)
T ss_pred HHHHHHHHHHHHhhhhhcchhhHHHHHH
Confidence 4556677788888877777666554433
No 299
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=38.00 E-value=70 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 265 FKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 265 ~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
|.=|.++-...++..-++|+-|+...+||.|=|
T Consensus 12 i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 12 ILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence 333444555566666789999999999999955
No 300
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.49 E-value=5.3e+02 Score=27.39 Aligned_cols=108 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhcccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH--
Q 019425 182 EAIVDEYNRLLAT--QLETQRQYYESLLAEAKSKRESLIPETVE---------KAVASKMQDIQNELDICEEAKKAVA-- 248 (341)
Q Consensus 182 e~i~~EY~~LLtS--QLEsQR~yyE~~l~~~~~~~~~~i~~~~e---------k~~~~k~~~l~~kl~kl~~E~~~~~-- 248 (341)
+.+..||++.+.+ +|||-+..|++...+++ ..-+--...++ ..+..++..++.+...+.......+
T Consensus 244 eel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~p 322 (521)
T KOG1937|consen 244 EELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQP 322 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hHHHHHH
Q 019425 249 -----DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATIL---DLEEQIR 291 (341)
Q Consensus 249 -----~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~---dL~EQlr 291 (341)
..=+...+|++---.++..+++-.... ...+++|+ +|.+++|
T Consensus 323 ll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL-~a~~eei~~~eel~~~Lr 372 (521)
T KOG1937|consen 323 LLQKKLQLREELKNLETEDEEIRRIQELEQDL-EAVDEEIESNEELAEKLR 372 (521)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
No 301
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=37.49 E-value=1.8e+02 Score=21.98 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
+..-..+|.-|+++|+++.-..
T Consensus 42 l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 42 LRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444567888888888876543
No 302
>PRK04325 hypothetical protein; Provisional
Probab=37.41 E-value=2e+02 Score=22.48 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Q 019425 233 IQNELDICEEAKKAV----ADVNSKLIK 256 (341)
Q Consensus 233 l~~kl~kl~~E~~~~----~~ln~~L~~ 256 (341)
++.++..|+....+. .+||+.+.+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~ 34 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444443 345544433
No 303
>PF14282 FlxA: FlxA-like protein
Probab=37.39 E-value=1.8e+02 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHhHhHHHHHHhHhHhhh
Q 019425 278 LRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~le 298 (341)
.+.+++..|+.||.+|..-|.
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888876664
No 304
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=37.25 E-value=2.6e+02 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=8.9
Q ss_pred HHhHhHHHHHHhHhHhhhh
Q 019425 281 ATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~lea 299 (341)
..|.||+-+|-|+.--|+.
T Consensus 58 qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 58 QRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443
No 305
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=37.25 E-value=4e+02 Score=25.91 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019425 180 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~ 212 (341)
-++.+..+| +.+||.|-.||+.+..++.+
T Consensus 75 ~LeeliNkW----s~el~~Qe~vF~~q~~qvNa 103 (254)
T KOG2196|consen 75 TLEELINKW----SLELEEQERVFLQQATQVNA 103 (254)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Confidence 367777766 68999999999999888764
No 306
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=37.20 E-value=5.3e+02 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hcccHHHHHHHH------HHHHHHHHHHHHHHH
Q 019425 189 NRLLATQLETQRQYYESLLAEAKSKR--ESLIPETVEKAV------ASKMQDIQNELDICE 241 (341)
Q Consensus 189 ~~LLtSQLEsQR~yyE~~l~~~~~~~--~~~i~~~~ek~~------~~k~~~l~~kl~kl~ 241 (341)
+.=|..-||+.|..-|..=.++..+. ..++.+|+..++ -....+||.+...|.
T Consensus 297 teeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll 357 (488)
T PF06548_consen 297 TEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLL 357 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477789999999887766665432 344556665543 234556666655443
No 307
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=36.96 E-value=5e+02 Score=30.92 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR-----KKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 300 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~-----~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq 300 (341)
+.++...|+.+.+++..+++.+...++-+..-...++ .+.+..+++...+. -++...+.-+-|||-|-.|=
T Consensus 1039 ~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~----ie~~tt~~~~~DL~ky~~aL 1114 (1294)
T KOG0962|consen 1039 VKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKAL----IELKTTELSNKDLDKYYKAL 1114 (1294)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655444333333333322332 33334443332221 35566777888998888773
No 308
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=36.87 E-value=5.7e+02 Score=28.08 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAK 244 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~ 244 (341)
.+..+++.++.|..+.
T Consensus 359 e~~~l~A~l~~L~se~ 374 (632)
T PF14817_consen 359 EVAGLKASLNALRSEC 374 (632)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444444
No 309
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.75 E-value=4.4e+02 Score=26.29 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHhHHHHHHhHh-HhhhhHHHHhccCCCCCcCCcEEe
Q 019425 273 ITSLRLRDATILDLEEQIRDLT-VYIEAQKTLTNMTDSDGIKGGTVL 318 (341)
Q Consensus 273 ~~~~~~k~~~i~dL~EQlrDLm-f~leaq~ki~~~~~~~ei~~Gti~ 318 (341)
.+...+++++|..|-+-|.||- .|.+-+.-+ +..|||+
T Consensus 210 ~~~~~erE~EV~ql~~sI~dL~~if~DL~~lV--------vdQGtvv 248 (305)
T KOG0809|consen 210 EEVVREREKEVTQLVESIYDLNQIFKDLSALV--------VDQGTVV 248 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhccch
Confidence 3345566777888888888873 445555444 4556665
No 310
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.74 E-value=4.4e+02 Score=26.19 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=11.8
Q ss_pred HHhHhHHHHHHhHhHhhhhHHH
Q 019425 281 ATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~k 302 (341)
..+..|+.++.+|.--|..+..
T Consensus 147 ~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 147 RAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666555554443
No 311
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=36.70 E-value=14 Score=33.05 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=24.3
Q ss_pred cccCCCCChhhhcccccccccceeeeeee-ccch
Q 019425 71 VAVPNYLSSDEFVRFCGSHIDHVEELIFI-RYKE 103 (341)
Q Consensus 71 lavP~~~t~~dlc~fC~~~~e~w~cL~c~-Ry~~ 103 (341)
.|-|.+=...-+|.+|| +.....|..|| ||..
T Consensus 109 ~a~p~~KP~r~fCaVCG-~~S~ysC~~CG~kyCs 141 (156)
T KOG3362|consen 109 YAKPSFKPLRKFCAVCG-YDSKYSCVNCGTKYCS 141 (156)
T ss_pred ccCCCCCCcchhhhhcC-CCchhHHHhcCCceee
Confidence 44555556667999999 88889999998 7744
No 312
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.53 E-value=6e+02 Score=27.75 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhh
Q 019425 199 QRQYYESLLAEAKSK 213 (341)
Q Consensus 199 QR~yyE~~l~~~~~~ 213 (341)
...|.+++|.+++++
T Consensus 195 a~~~L~~ql~~l~~~ 209 (754)
T TIGR01005 195 AADFLAPEIADLSKQ 209 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777766654
No 313
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=36.51 E-value=4.7e+02 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 190 RLLATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 190 ~LLtSQLEsQR~yyE~~l~~~~ 211 (341)
.-+.++.+.=|.|||-+..+-.
T Consensus 59 Kk~~k~I~ksrpf~elk~~er~ 80 (426)
T KOG2008|consen 59 KKIGKAIEKSRPFWELKRVERQ 80 (426)
T ss_pred HHHHHHHhhcccHHHHHHHHHH
Confidence 3457889999999998876533
No 314
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.41 E-value=2.1e+02 Score=29.12 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=12.3
Q ss_pred HHHhhhhcCCceeeeccccEEEE
Q 019425 106 AVRHWKDTQHWYSLDLRTQQIWD 128 (341)
Q Consensus 106 a~~H~~et~H~~am~l~t~rVWd 128 (341)
++..|....|++.+.++-.-.+.
T Consensus 87 ~Lk~~akk~~a~~lridP~~~~~ 109 (406)
T PF02388_consen 87 ELKKYAKKKRALFLRIDPNVIYQ 109 (406)
T ss_dssp HHHHHHCTTTEEEEEE--S-EEE
T ss_pred HHHHHHHHCCEEEEEEeCchhhh
Confidence 44445556788777776655554
No 315
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.40 E-value=5.6e+02 Score=29.82 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAV 247 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~ 247 (341)
+...+++++..+++.+.++...+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666766666655444
No 316
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=36.30 E-value=3.2e+02 Score=24.47 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=13.7
Q ss_pred HHHHhHhHHHHHHhHhHhhh
Q 019425 279 RDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~le 298 (341)
..+++.||+|.|.+-.-+|.
T Consensus 94 L~d~v~eLkeel~~el~~l~ 113 (146)
T PF05852_consen 94 LTDRVEELKEELEFELERLQ 113 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34667788887777666665
No 317
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=36.28 E-value=1.6e+02 Score=26.41 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 248 ADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 248 ~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
.+|...|+.+...+-...+.+.++
T Consensus 91 ~~l~e~lQ~~vq~l~~E~qk~~k~ 114 (155)
T PF07464_consen 91 NELQEKLQSAVQSLVQESQKLAKE 114 (155)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544444444444333
No 318
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.27 E-value=4.1e+02 Score=25.70 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=18.9
Q ss_pred cccceecccCCCCChhhhcccccc
Q 019425 65 STCIFVVAVPNYLSSDEFVRFCGS 88 (341)
Q Consensus 65 ~~~lcilavP~~~t~~dlc~fC~~ 88 (341)
...+.|++-|++--..|++..+..
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~ 37 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKR 37 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHH
Confidence 346788888888888888887776
No 319
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.24 E-value=3.8e+02 Score=25.38 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
.+-.+.+.|++.+..+..+...+.+.-..|..+...+..+|.+++.+
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666555555555555566666666666665555443
No 320
>PHA03332 membrane glycoprotein; Provisional
Probab=36.17 E-value=4.1e+02 Score=31.16 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 019425 227 ASKMQDIQNELDICEEAKK----AVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ 289 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~----~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQ 289 (341)
.+++..+++.++++..-.. .+..+.-.|.+|.+....++..||++.....-+....|..|-+|
T Consensus 897 ksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 897 ASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544443221 22345566666666666666666665544433333344444443
No 321
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=36.16 E-value=3.1e+02 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.4
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..-+.+|+.++-||-.-+
T Consensus 117 ~e~~~a~~el~~e~~~lAv~~ 137 (167)
T PRK14475 117 QAEAQAAADVKAAAVDLAAQA 137 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888887655
No 322
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=36.05 E-value=3e+02 Score=24.06 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=13.5
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-..+|+.|+-||-+-+
T Consensus 130 ek~~a~~~l~~~v~~lA~~i 149 (156)
T CHL00118 130 QKEKALKSLEEQVDTLSDQI 149 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888876544
No 323
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.95 E-value=6.1e+02 Score=27.68 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNR 190 (341)
Q Consensus 179 ~Kie~i~~EY~~ 190 (341)
.++..+..+...
T Consensus 237 ~~L~~l~~ql~~ 248 (754)
T TIGR01005 237 QQLAELNTELSR 248 (754)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 324
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.93 E-value=64 Score=29.35 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=2.9
Q ss_pred HHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 279 RDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
...+++.|++.+|||-.=|..|+++..
T Consensus 29 L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346778888888888888877777754
No 325
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.85 E-value=3.9e+02 Score=25.34 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=5.9
Q ss_pred HHhHhHHHHHHhHh
Q 019425 281 ATILDLEEQIRDLT 294 (341)
Q Consensus 281 ~~i~dL~EQlrDLm 294 (341)
.+|.+|+-+..=|+
T Consensus 127 ~Ki~e~~~~~~~l~ 140 (225)
T COG1842 127 QKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 326
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.52 E-value=3.3e+02 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKK 245 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~ 245 (341)
...++|..+++.|+.+.+
T Consensus 89 ~e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554443
No 327
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=35.37 E-value=2.1e+02 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=10.4
Q ss_pred HHHHHHhHhHHHHHHhHh
Q 019425 277 RLRDATILDLEEQIRDLT 294 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLm 294 (341)
+.+..+..-|...++|+|
T Consensus 86 ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 86 RIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 344455666666666665
No 328
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=35.12 E-value=3.8e+02 Score=24.98 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 222 VEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 222 ~ek~~~~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+.+.+.+.+..++.+++.+...++..+ +....|..-...|..-+..--+ ...++...+.+|.+|+.+-.
T Consensus 144 ~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~e-ie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 144 MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLE-IEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777777766665443 3444555555566654432211 12234444566666666543
No 329
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.79 E-value=3.3e+02 Score=24.50 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 189 NRLLATQLETQRQYYES 205 (341)
Q Consensus 189 ~~LLtSQLEsQR~yyE~ 205 (341)
.+.+.+..-+||+.|=.
T Consensus 91 ~~~~~~~fraQRN~YIs 107 (192)
T PF05529_consen 91 DQVLAKKFRAQRNMYIS 107 (192)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34566777788888763
No 330
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=34.60 E-value=3.5e+02 Score=24.53 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 233 IQNELDICEEAKKAV--ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 233 l~~kl~kl~~E~~~~--~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
-+.++..+.+.++.. .++-+.|.+-|+.|+.++. .++. +++...+.|+.+..+.++-
T Consensus 52 yk~ki~eLke~lK~~~NAEleekll~lq~lfq~Kl~---aKL~-aLKAak~~i~~~~d~d~~~ 110 (160)
T PF03978_consen 52 YKKKINELKEDLKDVSNAELEEKLLKLQKLFQDKLE---AKLA-ALKAAKQKIEGIQDKDQEC 110 (160)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHhcchhhhhHHH
Confidence 344444444444333 3788888888888887763 3333 3444557788887776664
No 331
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=34.54 E-value=3.5e+02 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=7.9
Q ss_pred HhHhHHHHHHhHhHhhh
Q 019425 282 TILDLEEQIRDLTVYIE 298 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~le 298 (341)
+...|=..|.+|+---+
T Consensus 127 eK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 127 EKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554433
No 332
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=34.53 E-value=3.8e+02 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 261 MRKKFKEIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 261 ~~~k~~~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
|..+-+.+|.+....+... +.+..++.+|
T Consensus 187 ~~~q~~~le~~a~~lC~~l-~~L~~~E~~L 215 (229)
T PF11101_consen 187 MEAQAQELEQKAQALCDSL-QQLDQQEQQL 215 (229)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444455555544444322 3344444444
No 333
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.51 E-value=7.3e+02 Score=28.11 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=49.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 019425 173 SGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDI--CEEAKKAVADV 250 (341)
Q Consensus 173 ~ea~~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~k--l~~E~~~~~~l 250 (341)
+.+-.++||-.....-..-..+.++.|-.--|.+|..+...-+. .-..+.+||++--+ ++.|.++++++
T Consensus 1062 s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~---------ni~EL~qlQNEKchlLvEhEtqklKel 1132 (1187)
T KOG0579|consen 1062 SNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEE---------NIIELDQLQNEKCHLLVEHETQKLKEL 1132 (1187)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677765544444444555666666666666665544322 12345566654443 24567778888
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 251 NSKLIKNQEIMRKKF 265 (341)
Q Consensus 251 n~~L~~nq~~~~~k~ 265 (341)
.+.--.+.+.|+.++
T Consensus 1133 de~h~~~~~~w~e~l 1147 (1187)
T KOG0579|consen 1133 DEKHHEMRELWQENL 1147 (1187)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888887765
No 334
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=34.33 E-value=3e+02 Score=29.30 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=12.4
Q ss_pred ceecccCCCCChhhhcccccc
Q 019425 68 IFVVAVPNYLSSDEFVRFCGS 88 (341)
Q Consensus 68 lcilavP~~~t~~dlc~fC~~ 88 (341)
-|-+.+|+.|-++-+..+.++
T Consensus 355 n~gl~lpfmmmpHpl~pvslp 375 (641)
T KOG3915|consen 355 NVGLGLPFMMMPHPLGPVSLP 375 (641)
T ss_pred ccccCCccccccCcCCcccCC
Confidence 344666666666666655554
No 335
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.11 E-value=2.2e+02 Score=22.08 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=5.9
Q ss_pred HhHhHHHHHHhH
Q 019425 282 TILDLEEQIRDL 293 (341)
Q Consensus 282 ~i~dL~EQlrDL 293 (341)
+|..|+.|++-|
T Consensus 37 ~I~~L~~~l~~L 48 (72)
T PRK02793 37 EMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 336
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.63 E-value=5.3e+02 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=19.0
Q ss_pred cccceecccCCCCChhhhccccccc
Q 019425 65 STCIFVVAVPNYLSSDEFVRFCGSH 89 (341)
Q Consensus 65 ~~~lcilavP~~~t~~dlc~fC~~~ 89 (341)
...+.|++-|++--..|++.....-
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r 159 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRR 159 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhc
Confidence 4567888888888888888777643
No 337
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=33.52 E-value=18 Score=32.44 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=41.2
Q ss_pred hccccc--ccccceeeeeeecc--------chhHHHHhhhhcCCc-eeeec----cccEEEEecCCc---eeeeccccCC
Q 019425 82 FVRFCG--SHIDHVEELIFIRY--------KEGHAVRHWKDTQHW-YSLDL----RTQQIWDYVGDN---YVHRLNQSKA 143 (341)
Q Consensus 82 lc~fC~--~~~e~w~cL~c~Ry--------~~~Ha~~H~~et~H~-~am~l----~t~rVWdY~~D~---yVhrl~q~k~ 143 (341)
.|.+|| +...+..|+.|.+| ...|-+.|-.-+.|- ..+-. .+..+=||.|.. |+=..+..|+
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~NvF~LGFipak~ 81 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSRNVFLLGFIPAKS 81 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT----TTTEEEEEETT
T ss_pred CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCCceeeEEEEEecc
Confidence 488999 56788888888655 578999999989986 33333 456678999865 6666777788
Q ss_pred CCceeee
Q 019425 144 DGKLVEM 150 (341)
Q Consensus 144 DGKlVEl 150 (341)
|+-+|=+
T Consensus 82 d~vvvll 88 (152)
T PF09416_consen 82 DSVVVLL 88 (152)
T ss_dssp SCEEEEE
T ss_pred CCeEEEE
Confidence 8766654
No 338
>PLN02939 transferase, transferring glycosyl groups
Probab=33.24 E-value=8.2e+02 Score=28.36 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEE 242 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~ 242 (341)
.-.|...||.-|+++..
T Consensus 298 ~~~~~~~~~~~~~~~~~ 314 (977)
T PLN02939 298 WWEKVENLQDLLDRATN 314 (977)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666665543
No 339
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=33.18 E-value=2.6e+02 Score=22.82 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 250 VNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 250 ln~~L~~nq~~~~~k~~~le 269 (341)
-|+-|......-.++++..+
T Consensus 38 en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 38 ENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 340
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=33.16 E-value=2.7e+02 Score=22.66 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 019425 192 LATQLETQRQYYESLLAEAKSKRE 215 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~~ 215 (341)
|..-|+.|...|..++.-+.++.+
T Consensus 6 L~~~L~~~~~~~~~L~~ll~~e~~ 29 (143)
T PF05130_consen 6 LIELLEEQIELLQELLELLEEERE 29 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888889988887777654
No 341
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.15 E-value=4.9e+02 Score=25.76 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=4.6
Q ss_pred HhHhHHHHHH
Q 019425 282 TILDLEEQIR 291 (341)
Q Consensus 282 ~i~dL~EQlr 291 (341)
.+.+|++++.
T Consensus 299 ~~~~l~~~~~ 308 (344)
T PF12777_consen 299 QIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4444544443
No 342
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=32.86 E-value=1.2e+02 Score=34.01 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAK 244 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~ 244 (341)
..++|+.+++++++++
T Consensus 812 e~~rL~K~l~kl~~ei 827 (874)
T PRK05729 812 ELARLEKELAKLEKEI 827 (874)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 343
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=32.86 E-value=4.4e+02 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=18.0
Q ss_pred HhHhH-HHHHHhHhHhhhhHHHHhc
Q 019425 282 TILDL-EEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 282 ~i~dL-~EQlrDLmf~leaq~ki~~ 305 (341)
-|.+= -|||++|--|++||-....
T Consensus 183 ~il~~~~e~l~~L~~lv~AQl~Yh~ 207 (220)
T cd07617 183 GISSTHVNHLRCLHEFVEAQATYYA 207 (220)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34555 4899999999999876544
No 344
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.82 E-value=2.8e+02 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQLETQ 199 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQ 199 (341)
++-.+..||---...+|.+|
T Consensus 62 rLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 62 RLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566543333334443
No 345
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=32.63 E-value=2.1e+02 Score=31.96 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 248 ADVNSKLIKNQEI--MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 248 ~~ln~~L~~nq~~--~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
..+++.+.++|.. ++++++.+.+++-..... ..+++++++.+...-+-=++++++..
T Consensus 216 ~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~-~~e~~~~~~kie~~~~p~evk~k~~~ 274 (782)
T COG0466 216 KKVKEQMEKSQREYYLREQLKAIQKELGEDDDD-KDEVEELREKIEKLKLPKEAKEKAEK 274 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-hhHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 3567777777775 577787777765432211 25688888888888777777776654
No 346
>PRK02119 hypothetical protein; Provisional
Probab=32.57 E-value=2.4e+02 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Q 019425 233 IQNELDICEEAKKAV----ADVNSKLIK 256 (341)
Q Consensus 233 l~~kl~kl~~E~~~~----~~ln~~L~~ 256 (341)
+++++..|+....+. .+||+.+.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444433 345554433
No 347
>PRK00295 hypothetical protein; Provisional
Probab=32.48 E-value=2.3e+02 Score=21.75 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 019425 249 DVNSKLIK 256 (341)
Q Consensus 249 ~ln~~L~~ 256 (341)
+||+.+.+
T Consensus 23 ~Ln~~v~~ 30 (68)
T PRK00295 23 ALNDVLVE 30 (68)
T ss_pred HHHHHHHH
Confidence 45554433
No 348
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=32.37 E-value=4.1e+02 Score=27.41 Aligned_cols=20 Identities=10% Similarity=0.338 Sum_probs=12.3
Q ss_pred HHHHHHHHhHhHHHHHHhHh
Q 019425 275 SLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLm 294 (341)
.+..++.+|.+|+.+++++.
T Consensus 105 ~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 105 QLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHhHHHHHHHHHHHhc
Confidence 34455566677777666665
No 349
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.27 E-value=8.3e+02 Score=28.68 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 019425 193 ATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~ 213 (341)
+.+...-|.-||..++.++-+
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~ 796 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQ 796 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333344444566666655543
No 350
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.83 E-value=2.9e+02 Score=22.64 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019425 195 QLETQRQYYESLLAEAKS 212 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~ 212 (341)
||..|...|+..|..+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~ 20 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQ 20 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555556655555544
No 351
>PF14369 zf-RING_3: zinc-finger
Probab=31.69 E-value=35 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.7
Q ss_pred cEEEEecCCceeeeccc
Q 019425 124 QQIWDYVGDNYVHRLNQ 140 (341)
Q Consensus 124 ~rVWdY~~D~yVhrl~q 140 (341)
++-|||.|+..|+-...
T Consensus 1 ~~ywCh~C~~~V~~~~~ 17 (35)
T PF14369_consen 1 QRYWCHQCNRFVRIAPS 17 (35)
T ss_pred CCEeCccCCCEeEeCcC
Confidence 46899999999986543
No 352
>PHA03332 membrane glycoprotein; Provisional
Probab=31.61 E-value=3.9e+02 Score=31.33 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhH
Q 019425 245 KAVADVNSKLIKNQEI---MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 300 (341)
Q Consensus 245 ~~~~~ln~~L~~nq~~---~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq 300 (341)
..+..+|+...+.++. +-..+.++-....+-+++-.-+|.+|++||.+=|.+..++
T Consensus 898 saIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~ 956 (1328)
T PHA03332 898 SKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATN 956 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3445677776666554 3345556666666666777778999999998887766543
No 353
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.58 E-value=6.9e+02 Score=26.98 Aligned_cols=11 Identities=36% Similarity=0.746 Sum_probs=6.3
Q ss_pred eeeccccEEEE
Q 019425 118 SLDLRTQQIWD 128 (341)
Q Consensus 118 am~l~t~rVWd 128 (341)
+|+=.....||
T Consensus 101 sLeEqv~~~~d 111 (596)
T KOG4360|consen 101 SLEEQVDAPWD 111 (596)
T ss_pred hhHhhhcchHH
Confidence 44445566776
No 354
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=31.38 E-value=1.3e+02 Score=32.08 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKN 257 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~n 257 (341)
...+++.|++++.++++.++.|..+-..|+++
T Consensus 408 ~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~ 439 (543)
T COG1315 408 IVERLKELTEEISLHEERLKKLTKLLVALVKV 439 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888877777777776
No 355
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=31.20 E-value=4.5e+02 Score=24.68 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQL 196 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQL 196 (341)
++..|..||...+..-+
T Consensus 41 ~m~~i~~e~Ek~i~~~i 57 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMI 57 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566667766544433
No 356
>KOG2341 consensus TATA box binding protein (TBP)-associated factor, RNA polymerase II [Transcription]
Probab=31.13 E-value=1.3e+02 Score=32.43 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 235 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 235 ~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
++|++.++|++..++.-..|++ +...++.+..+.+.++..++.. .-+-++.|-||.+.--.+
T Consensus 436 Eqldk~E~Erk~~~ere~l~ra--ks~~nkeD~eq~r~kakake~q-a~~~~~~r~rdanl~A~a 497 (563)
T KOG2341|consen 436 EQLDKAEEERKESREREELLRA--KSRSNKEDPEQLRMKAKAKEMQ-AAEALQKRQRDANLMALA 497 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh--hhhhcccChHHHHHHHHHHHHH-HHHhhhhhcchhhhhhhh
Confidence 3666666666665544444442 2222222222223222222221 223455677777664444
No 357
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.11 E-value=8.1e+02 Score=27.62 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019425 193 ATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~ 212 (341)
++|...+|.+|+-+=..+..
T Consensus 314 ~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 314 EEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 44554558888866554443
No 358
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.10 E-value=3.9e+02 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=11.8
Q ss_pred HhHHHHHHhHhHhhhhHHHHh
Q 019425 284 LDLEEQIRDLTVYIEAQKTLT 304 (341)
Q Consensus 284 ~dL~EQlrDLmf~leaq~ki~ 304 (341)
...+|++-||.+.|- +||.
T Consensus 124 ~~~~~~~i~~~~~i~--~k~~ 142 (155)
T PRK06569 124 TNKSEAIIKLAVNII--EKIA 142 (155)
T ss_pred HhHHHHHHHHHHHHH--HHHh
Confidence 344677777777765 5553
No 359
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.05 E-value=3.4e+02 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++...+.+|+.++-|+-+-+
T Consensus 112 e~~~a~~~l~~~~~~lA~~~ 131 (156)
T PRK05759 112 ERKRAREELRKQVADLAVAG 131 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777765544
No 360
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.88 E-value=4.3e+02 Score=24.38 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=16.6
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
..++..-+.+|+.|+.||-.-+
T Consensus 154 e~Ek~~a~~~Lk~ei~~lAv~i 175 (205)
T PRK06231 154 EKERRELKEQLQKESVELAMLA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667889999999987755
No 361
>PHA03161 hypothetical protein; Provisional
Probab=30.65 E-value=4e+02 Score=23.96 Aligned_cols=7 Identities=57% Similarity=0.933 Sum_probs=3.0
Q ss_pred HhHhHHH
Q 019425 282 TILDLEE 288 (341)
Q Consensus 282 ~i~dL~E 288 (341)
+|.||++
T Consensus 97 rv~eLke 103 (150)
T PHA03161 97 KILELKE 103 (150)
T ss_pred HHHHHHH
Confidence 3444444
No 362
>PRK12705 hypothetical protein; Provisional
Probab=30.52 E-value=6.9e+02 Score=26.65 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=6.4
Q ss_pred CCcCCcEEeecC
Q 019425 310 DGIKGGTVLPVS 321 (341)
Q Consensus 310 ~ei~~Gti~~~~ 321 (341)
+-+.+-||.+++
T Consensus 192 ~~~~e~tvs~v~ 203 (508)
T PRK12705 192 ETASDLSVSVVP 203 (508)
T ss_pred chhhhheeeeee
Confidence 345666665544
No 363
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=30.43 E-value=3.9e+02 Score=23.69 Aligned_cols=26 Identities=4% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHhHhHHHHHHhHhHhhhhHHHHhcc
Q 019425 281 ATILDLEEQIRDLTVYIEAQKTLTNM 306 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ki~~~ 306 (341)
+.-.++=++|-+-+.|++.-..++++
T Consensus 95 ~~F~~~L~~LD~cl~Fl~~h~~fkea 120 (157)
T PF04136_consen 95 DSFKPMLSRLDECLEFLEEHPNFKEA 120 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34445666777778888776666553
No 364
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.41 E-value=4e+02 Score=24.94 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHhHhHHHHHHhHhHhhhhHH
Q 019425 281 ATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ 301 (341)
+.|.-+++||.=|=-||...+
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665443
No 365
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.22 E-value=3.1e+02 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=13.4
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+.....+|..|+++|..+.-|-+=
T Consensus 90 l~~l~~~~~k~e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 90 LEELKSEISKLEEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666655443
No 366
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.22 E-value=6.1e+02 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 244 KKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 244 ~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k 279 (341)
...+++-|.+|+-..+.+.....+.|++.+...++.
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 344456677777666666666666665555444433
No 367
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.79 E-value=5.2e+02 Score=24.97 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.2
Q ss_pred HHHhHhHHHHHHhH
Q 019425 280 DATILDLEEQIRDL 293 (341)
Q Consensus 280 ~~~i~dL~EQlrDL 293 (341)
..++..|+++|.+|
T Consensus 283 ~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 283 QEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 34556666666655
No 368
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=29.72 E-value=3.3e+02 Score=22.61 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 019425 286 LEEQIRD 292 (341)
Q Consensus 286 L~EQlrD 292 (341)
-+|+|++
T Consensus 79 ~~e~ik~ 85 (110)
T PF10828_consen 79 RRESIKT 85 (110)
T ss_pred HHHHHHH
Confidence 3444443
No 369
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.70 E-value=6e+02 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
||.+|....+....++..|+.|.+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk 462 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLK 462 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHH
Confidence 345555444444455555555544
No 370
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=29.48 E-value=1.5e+02 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=15.6
Q ss_pred HHHHHhHhHHHHHHhHhHhhhhHHHH
Q 019425 278 LRDATILDLEEQIRDLTVYIEAQKTL 303 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~leaq~ki 303 (341)
+...+|.+|+.+.++|..-|.-=+++
T Consensus 290 eL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 290 ELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34456677777777776666544433
No 371
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=29.44 E-value=4.1e+02 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 019425 192 LATQLETQRQYYESLLAEAKSK 213 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~ 213 (341)
++.-|+.-+.+-.+.|..+++.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~ 68 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEK 68 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766654
No 372
>PF15294 Leu_zip: Leucine zipper
Probab=29.37 E-value=3.6e+02 Score=26.60 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 189 NRLLATQLETQRQYY 203 (341)
Q Consensus 189 ~~LLtSQLEsQR~yy 203 (341)
+-||--||=+|-.=|
T Consensus 61 n~lllrql~~qAek~ 75 (278)
T PF15294_consen 61 NVLLLRQLFSQAEKW 75 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677764444433
No 373
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.31 E-value=2.6e+02 Score=21.33 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.0
Q ss_pred HHhHhHHHHHH
Q 019425 281 ATILDLEEQIR 291 (341)
Q Consensus 281 ~~i~dL~EQlr 291 (341)
.+|..|++++.
T Consensus 46 ~ei~~L~~e~e 56 (61)
T PF08826_consen 46 QEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 374
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=29.17 E-value=5.3e+02 Score=25.97 Aligned_cols=7 Identities=0% Similarity=-0.685 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019425 185 VDEYNRL 191 (341)
Q Consensus 185 ~~EY~~L 191 (341)
+.=|.++
T Consensus 44 g~~~~~~ 50 (372)
T PF04375_consen 44 GAGGWYW 50 (372)
T ss_pred HHHHHHH
Confidence 3333333
No 375
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=29.11 E-value=3.1e+02 Score=22.10 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEI-----------MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~-----------~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
+-..|+..+.+|++.+.....++..|.+-... +-.+++++=.+ +-..+.+|..|+.+|-||-+-+
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~E----IA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEE----IALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666543221 11233332222 3445678889999998886654
No 376
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.06 E-value=2.3e+02 Score=21.22 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=5.3
Q ss_pred HhHhHHHHHHhH
Q 019425 282 TILDLEEQIRDL 293 (341)
Q Consensus 282 ~i~dL~EQlrDL 293 (341)
++.+|++++..|
T Consensus 39 e~~~L~~ei~~l 50 (80)
T PF04977_consen 39 ENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHh
Confidence 344444444444
No 377
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.06 E-value=2.5e+02 Score=21.01 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKN----QEIMRKKFKEIEEREITSLRLRDATILDLE 287 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~n----q~~~~~k~~~lee~~~~~~~~k~~~i~dL~ 287 (341)
.+++.++..+.........+.+.-..|... -..++.++..|..+.........+....|+
T Consensus 41 ~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 41 KKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355555555555444444444444555332 344555666666655555444444444443
No 378
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=28.97 E-value=4.2e+02 Score=23.59 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=14.5
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..-+.+|+.++-||-+-+
T Consensus 125 ~ek~~a~~~l~~ei~~lA~~~ 145 (173)
T PRK13453 125 SQKERAIADINNQVSELSVLI 145 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888876655
No 379
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.86 E-value=8.6e+02 Score=27.21 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYES 205 (341)
Q Consensus 192 LtSQLEsQR~yyE~ 205 (341)
|...|..|+.-|+.
T Consensus 561 lR~EL~~QQ~~y~~ 574 (739)
T PF07111_consen 561 LRRELTQQQEVYER 574 (739)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 380
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.84 E-value=6.6e+02 Score=25.86 Aligned_cols=24 Identities=4% Similarity=0.008 Sum_probs=17.9
Q ss_pred cccceecccCCCCChhhhcccccc
Q 019425 65 STCIFVVAVPNYLSSDEFVRFCGS 88 (341)
Q Consensus 65 ~~~lcilavP~~~t~~dlc~fC~~ 88 (341)
...+.|++-|++--..|++.....
T Consensus 129 p~~i~vits~~~aa~~D~~~~~~~ 152 (432)
T TIGR00237 129 PKRVGVITSQTGAALADILHILKR 152 (432)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHh
Confidence 445788888888888888777654
No 381
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.73 E-value=4.7e+02 Score=24.11 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhHHHHHHhH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER---EITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~---~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.+.....++....++++++.......+..+..-...+..++.++++. ........+.+|..|+-.+..+
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=28.69 E-value=1.7e+02 Score=32.20 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
.-..++++|+..+.+|+.|++|+.--.+.+
T Consensus 30 ~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 30 SHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888875333333
No 383
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=28.55 E-value=3.7e+02 Score=26.85 Aligned_cols=24 Identities=8% Similarity=0.282 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 268 IEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 268 lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
|......+...-++|+.+|..+|.
T Consensus 230 Lkrltd~A~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 230 LKRLTDRASQMSEEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333333344455667777776654
No 384
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=28.50 E-value=2.9e+02 Score=27.64 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 257 NQEIMRKKFKEIEEREI---------TSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 257 nq~~~~~k~~~lee~~~---------~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
.+..+..+++.++++.+ .......+++.+..+.+++|+.|.+-
T Consensus 67 k~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~L 118 (310)
T KOG1161|consen 67 KESELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRL 118 (310)
T ss_pred HHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555543 11223446788888899999998764
No 385
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=28.36 E-value=9.6e+02 Score=27.62 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 019425 197 ETQRQYYE 204 (341)
Q Consensus 197 EsQR~yyE 204 (341)
+.+|.+++
T Consensus 354 ~ear~~~~ 361 (980)
T KOG0980|consen 354 EEARRRIE 361 (980)
T ss_pred HHHHHHHH
Confidence 35555543
No 386
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.32 E-value=7.3e+02 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019425 196 LETQRQYYESLLAEAKS 212 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~ 212 (341)
++-|=.|+|.+..++.+
T Consensus 220 i~~kv~flerkv~eled 236 (502)
T KOG0982|consen 220 IERKVRFLERKVQELED 236 (502)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33334444444444443
No 387
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.26 E-value=4.2e+02 Score=23.45 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=12.4
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
+++.-+.+|+.++-|+-+-+
T Consensus 126 e~~~a~~~l~~~i~~lA~~~ 145 (175)
T PRK14472 126 EKRRALDVLRNEVADLAVKG 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777765544
No 388
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.23 E-value=6.2e+02 Score=25.39 Aligned_cols=127 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH---------------HHHHHHH
Q 019425 167 SEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEK---------------AVASKMQ 231 (341)
Q Consensus 167 ~~~~~~~ea~~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek---------------~~~~k~~ 231 (341)
+.|+..+..+.+.=++.|...-...=......-..|+++.|.+++++.+. ...++++ ....++.
T Consensus 140 ~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~-ae~~l~~fr~~~~i~~~~~~~~~~~~~l~ 218 (444)
T TIGR03017 140 GVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLAR-AQSKLSAYQQEKGIVSSDERLDVERARLN 218 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcccCcccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhHHHHH
Q 019425 232 DIQNELDICEEAKKAVAD------------------VNSKLIKNQEIMRKKFKEIEEREITS---LRLRDATILDLEEQI 290 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~------------------ln~~L~~nq~~~~~k~~~lee~~~~~---~~~k~~~i~dL~EQl 290 (341)
+|+.++..+..+...... .-..|+......+.++.++..+.... ....+.+|.+|+.++
T Consensus 219 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 219 ELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q ss_pred HhHh
Q 019425 291 RDLT 294 (341)
Q Consensus 291 rDLm 294 (341)
..-+
T Consensus 299 ~~e~ 302 (444)
T TIGR03017 299 NAEI 302 (444)
T ss_pred HHHH
No 389
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=28.15 E-value=4.9e+02 Score=24.12 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQL 196 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQL 196 (341)
.+-..+..+..-|.+++
T Consensus 71 ~~a~~H~~~a~~L~~~v 87 (236)
T cd07651 71 SMAKSHLKFAKQIRQDL 87 (236)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 390
>PLN02943 aminoacyl-tRNA ligase
Probab=28.11 E-value=1.5e+02 Score=33.77 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAK 244 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~ 244 (341)
..+|+.+++++++|+
T Consensus 891 ~~rL~K~l~klekei 905 (958)
T PLN02943 891 VERLSKRLSKMQTEY 905 (958)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 391
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.02 E-value=4e+02 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=13.3
Q ss_pred HhHHHHHHhHhHhhhhHH
Q 019425 284 LDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 284 ~dL~EQlrDLmf~leaq~ 301 (341)
.+++..+-|||+-|.-+.
T Consensus 80 ~~~q~EldDLL~ll~Dle 97 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLE 97 (136)
T ss_pred HhhhhhHHHHHHHHHhHH
Confidence 567778889988876543
No 392
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.89 E-value=4.4e+02 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLATQLET 198 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEs 198 (341)
.+.-++|..=...+|.+.++.
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~ 38 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEK 38 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566766666677777765
No 393
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.68 E-value=6.6e+02 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=18.1
Q ss_pred cccCCCCChhhhcccccccccceee
Q 019425 71 VAVPNYLSSDEFVRFCGSHIDHVEE 95 (341)
Q Consensus 71 lavP~~~t~~dlc~fC~~~~e~w~c 95 (341)
+++|..+.++-+=.-+|...-.++.
T Consensus 83 ~g~~~df~p~kLk~G~Ge~vc~VLd 107 (359)
T PF10498_consen 83 LGVPVDFPPSKLKQGSGEHVCYVLD 107 (359)
T ss_pred cCCCCCCChHHhhCCCCHHHHHHHH
Confidence 6788888888888888776544443
No 394
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.53 E-value=2.4e+02 Score=22.48 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
++..|+..||.+++.++.-...+.+||++|
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~~~v~~l~~kl 44 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNLPDVTELNKKL 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 456677777777777766666666666666
No 395
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.52 E-value=2.5e+02 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=10.9
Q ss_pred HHhHhHHHHHHhHhHhhh
Q 019425 281 ATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~le 298 (341)
.+|.+|+.++++|---|+
T Consensus 29 ~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655443
No 396
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.41 E-value=7.5e+02 Score=26.07 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 278 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~ 278 (341)
...|.+..++..+.-.+++++--.+.+....+++++.+.|++.++..+.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~ 184 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKA 184 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3456677777777777777777777777777777777777766655543
No 397
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.26 E-value=3.6e+02 Score=22.38 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
.+++.+++.++.+.+.++.-|+.|..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 398
>PF15294 Leu_zip: Leucine zipper
Probab=27.25 E-value=6.1e+02 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhh
Q 019425 266 KEIEEREITSLRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 266 ~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~le 298 (341)
..||........+.+....|+.++...|...|.
T Consensus 193 ~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~ 225 (278)
T PF15294_consen 193 SDLENKMAALKSELEKALQDKESQQKALEETLQ 225 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555666655555543
No 399
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.13 E-value=7.4e+02 Score=25.92 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMR 262 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~ 262 (341)
++..+.|+.+|..+.++...+..--..|...++.++
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665555555444444555444444
No 400
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.12 E-value=2.9e+02 Score=21.12 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 019425 231 QDIQNELD 238 (341)
Q Consensus 231 ~~l~~kl~ 238 (341)
..++.+++
T Consensus 9 ~~ie~~l~ 16 (71)
T PF10779_consen 9 NRIETKLD 16 (71)
T ss_pred HHHHHHHH
Confidence 33333333
No 401
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.08 E-value=3.7e+02 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=11.1
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
..+.+..++++++.+++.-|
T Consensus 86 ~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 86 ELEAALDELEAELDTLLLTI 105 (429)
T ss_pred hccHHHHHHHHHHHHHHHhC
Confidence 33345556666666666544
No 402
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.98 E-value=8.7e+02 Score=26.68 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 181 VEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI 260 (341)
Q Consensus 181 ie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~ 260 (341)
+-+.-+|..+-..-+||.--.|-.+.+..+.......-...++ ++...+......+.+|..+...++ .+|++..+.
T Consensus 239 lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~-~~~~~L~~kd~~i~~L~~di~~~~---~S~~~e~e~ 314 (629)
T KOG0963|consen 239 LIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDID-ALGSVLNQKDSEIAQLSNDIERLE---ASLVEEREK 314 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchH-HHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHh
Q 019425 261 MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLT 304 (341)
Q Consensus 261 ~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~ 304 (341)
|..+|..++.+ ++.+...+++|++++.--.-|=+-...++
T Consensus 315 ~~~qI~~le~~----l~~~~~~leel~~kL~~~sDYeeIK~ELs 354 (629)
T KOG0963|consen 315 HKAQISALEKE----LKAKISELEELKEKLNSRSDYEEIKKELS 354 (629)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccHHHHHHHHH
No 403
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.95 E-value=4.4e+02 Score=30.82 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=8.6
Q ss_pred cCCceeeeccccEEEEec
Q 019425 113 TQHWYSLDLRTQQIWDYV 130 (341)
Q Consensus 113 t~H~~am~l~t~rVWdY~ 130 (341)
-+|...-=.-|++++|-.
T Consensus 219 rsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 219 RSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred ccceeEEEEEeeEEeccc
Confidence 345433333456666644
No 404
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.93 E-value=3.4e+02 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKE 267 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~ 267 (341)
.+..+..++..++.....+-+-|..|+-.-+.++.++.+
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333344444433
No 405
>PF14772 NYD-SP28: Sperm tail
Probab=26.84 E-value=3.5e+02 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHhHHHHHH
Q 019425 273 ITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 273 ~~~~~~k~~~i~dL~EQlr 291 (341)
...+..|+.-|..|.++|.
T Consensus 68 e~ii~~Kd~lI~~L~~eL~ 86 (104)
T PF14772_consen 68 ERIIDRKDALIKELQQELK 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555553
No 406
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=26.80 E-value=4.2e+02 Score=24.69 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 245 KAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 245 ~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k 279 (341)
..++++|+-|.++-..|+.++..||++.++..+..
T Consensus 90 r~le~~~q~L~k~daf~Ke~larlEen~~e~ykv~ 124 (192)
T KOG4083|consen 90 RDLEEKSQELKKQDAFYKEQLARLEENSSEFYKVT 124 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34567889999999999999999998876665443
No 407
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=26.62 E-value=22 Score=37.57 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccH-HHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019425 188 YNRLLATQLETQRQYYESLLAEAKSKRESLIP-ETVEK-AVASKMQDIQNELDICEE-------AKKAVADVNSKLIKNQ 258 (341)
Q Consensus 188 Y~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~-~~~ek-~~~~k~~~l~~kl~kl~~-------E~~~~~~ln~~L~~nq 258 (341)
--+|+..=||+|+.|=...-..........+. ..-++ .+.+.+.+|+..|..|.+ =+.++.+=-..|++..
T Consensus 393 ~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El 472 (539)
T PF10243_consen 393 HGGLVQKILETKKELEKSANSEEKEEKEQSLAASKKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKEL 472 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHHHhhcccccccccccccchhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHH
Confidence 34566666788877643322221111111010 00011 123445555555544432 2333444345677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 259 EIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
+.|+..++.....+.......+..++.|..||.+|
T Consensus 473 ~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~el 507 (539)
T PF10243_consen 473 EMWRSEYRQHAEALQEEQSITDEALEPLKAQLAEL 507 (539)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 89988877766665555444444455555555444
No 408
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.50 E-value=6.1e+02 Score=24.72 Aligned_cols=39 Identities=5% Similarity=-0.019 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 264 KFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 264 k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
+|..|..........-+.+..||.+-++=++-.|+.+..
T Consensus 121 qIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q 159 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQ 159 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444556677777777777766665443
No 409
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=26.49 E-value=4.6e+02 Score=23.23 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 251 NSKLIKNQ----EIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 251 n~~L~~nq----~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
+..|.++. ..|..=++++..+.+..-.+.++.+..|.+|-.||
T Consensus 95 ~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~ 141 (145)
T PF14942_consen 95 DDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEM 141 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 34555555555554444445555566666665554
No 410
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.49 E-value=6.3e+02 Score=24.84 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=10.9
Q ss_pred eeEEeccCCCCCCCCCCCCCc
Q 019425 45 GLVHLFRGTSQSYQQNPNSRS 65 (341)
Q Consensus 45 Gi~Hlf~~~~~~s~~~pv~r~ 65 (341)
|.+.||..-.++....|+.|+
T Consensus 4 ~~~~l~~~~~~~~~~~~~s~~ 24 (269)
T PF05278_consen 4 KSTYLFPEILLSPRSRPVSRS 24 (269)
T ss_pred CcEEeehhhccCCccCCCCCc
Confidence 445566655554445555443
No 411
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=5.9e+02 Score=24.57 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.7
Q ss_pred hhHHHH
Q 019425 179 SKVEAI 184 (341)
Q Consensus 179 ~Kie~i 184 (341)
+++|++
T Consensus 29 s~~D~f 34 (246)
T KOG4657|consen 29 SKIDSF 34 (246)
T ss_pred HHHHHH
Confidence 445543
No 412
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=26.45 E-value=4.3e+02 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=15.2
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..-+.+|+.++-||-+-+
T Consensus 112 ~e~~~a~~~l~~ei~~lA~~~ 132 (159)
T PRK13461 112 REKEKAEYEIKNQAVDLAVLL 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888887655
No 413
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.44 E-value=3e+02 Score=21.05 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 019425 233 IQNELDICE 241 (341)
Q Consensus 233 l~~kl~kl~ 241 (341)
++.++...+
T Consensus 4 i~e~l~~ie 12 (71)
T PF10779_consen 4 IKEKLNRIE 12 (71)
T ss_pred HHHHHHHHH
Confidence 333444333
No 414
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=26.38 E-value=22 Score=39.87 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019425 187 EYNRLLATQLETQRQYYESLLAEAKSKRE 215 (341)
Q Consensus 187 EY~~LLtSQLEsQR~yyE~~l~~~~~~~~ 215 (341)
||.. |..+||....-+|..|..++.+..
T Consensus 103 El~~-Lrr~LEe~~~~~e~~~~~lrkkh~ 130 (859)
T PF01576_consen 103 ELAK-LRRDLEEANLQHEATLAELRKKHQ 130 (859)
T ss_dssp -----------------------------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4443 478889888889999988887654
No 415
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.26 E-value=6e+02 Score=25.30 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.3
Q ss_pred hHHHHHHhHhHhhh
Q 019425 285 DLEEQIRDLTVYIE 298 (341)
Q Consensus 285 dL~EQlrDLmf~le 298 (341)
|+.-|.+-|=-+|.
T Consensus 153 DINiQN~KLEsLLq 166 (305)
T PF15290_consen 153 DINIQNKKLESLLQ 166 (305)
T ss_pred hhhhhHhHHHHHHH
Confidence 55555555544443
No 416
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=26.25 E-value=4.3e+02 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.8
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..-+.+|+.|+-||-+-+
T Consensus 109 ~ek~~a~~el~~~~~~lA~~~ 129 (159)
T PRK09173 109 QAETDAINAVRSSAVDLAIAA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999987755
No 417
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=26.20 E-value=5.9e+02 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 277 RLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
...+.+|.+|+.|+.|.. .++...+.
T Consensus 52 ~~~~~Ki~elkr~lAd~v---~~~k~~~~ 77 (428)
T PF00846_consen 52 SALQDKIAELKRQLADRV---AAGKQSAK 77 (428)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHCH---
T ss_pred HHHHHHHHHHHHHHHHHH---hccccccC
Confidence 344567889999999943 35554443
No 418
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=26.10 E-value=1.8e+02 Score=33.18 Aligned_cols=18 Identities=6% Similarity=0.263 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKK 245 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~ 245 (341)
+...+|+.+++++++|..
T Consensus 929 ~E~~rL~K~l~kl~~ei~ 946 (995)
T PTZ00419 929 KELAKLEKKLAKLQKSLE 946 (995)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 419
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=26.09 E-value=8.2e+02 Score=26.03 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEA-------KKAVADVNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E-------~~~~~~ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
.+++.+|+.+|.+|.+- ..++.+=-.+|+..+++|+.....-+++++
T Consensus 478 ~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq 531 (583)
T KOG3809|consen 478 REKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQ 531 (583)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34777777777776542 334444456788889999887766555443
No 420
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.06 E-value=1.3e+03 Score=28.20 Aligned_cols=11 Identities=9% Similarity=0.564 Sum_probs=4.5
Q ss_pred cCCCCChhhhc
Q 019425 73 VPNYLSSDEFV 83 (341)
Q Consensus 73 vP~~~t~~dlc 83 (341)
+|..+.+.++.
T Consensus 126 ~~~~v~~~d~l 136 (1486)
T PRK04863 126 LPDSVQPTDLL 136 (1486)
T ss_pred CccccChHHHH
Confidence 44444433333
No 421
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.00 E-value=5.7e+02 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQL---ETQRQYYESLLAEA 210 (341)
Q Consensus 182 e~i~~EY~~LLtSQL---EsQR~yyE~~l~~~ 210 (341)
..+...|+..|..|+ -++..||+.+...+
T Consensus 61 ~~v~R~~d~fl~~q~r~~~s~~~~~~~~~~~l 92 (651)
T PRK06945 61 VTVKRQYSQYLSAQLNNAQAASSSLSTYYSQI 92 (651)
T ss_pred eeEEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667888888887 45556777654443
No 422
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.69 E-value=7.8e+02 Score=26.04 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.1
Q ss_pred HhHHHHHH
Q 019425 284 LDLEEQIR 291 (341)
Q Consensus 284 ~dL~EQlr 291 (341)
..|++.+.
T Consensus 378 ~~l~~~v~ 385 (563)
T TIGR00634 378 ERLAKRVE 385 (563)
T ss_pred HHHHHHHH
Confidence 33444333
No 423
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.46 E-value=6.7e+02 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhh
Q 019425 203 YESLLAEAKSKRE 215 (341)
Q Consensus 203 yE~~l~~~~~~~~ 215 (341)
|-++|+.++.+.+
T Consensus 40 yk~kLa~Lq~~Le 52 (291)
T KOG4466|consen 40 YKDKLAQLQAQLE 52 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776643
No 424
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.29 E-value=6e+02 Score=24.18 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
+.+..|..+++.....+..+..+++... .+..........+........+.++...+.|..|+-.|+..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=25.20 E-value=6.2e+02 Score=24.31 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYESLLAE 209 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~ 209 (341)
|.++.+.=|-|||.+...
T Consensus 55 Lg~~I~karPYyea~~~a 72 (239)
T PF05276_consen 55 LGSCIEKARPYYEARRKA 72 (239)
T ss_pred HHHHHHHhchHHHHHHHH
Confidence 446667778899977543
No 426
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.20 E-value=6.8e+02 Score=24.82 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=5.0
Q ss_pred HhHhHHHHHHhH
Q 019425 282 TILDLEEQIRDL 293 (341)
Q Consensus 282 ~i~dL~EQlrDL 293 (341)
++.+++++|+++
T Consensus 247 ~k~e~~~~I~~a 258 (312)
T smart00787 247 KKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 427
>KOG2701 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=9.3e+02 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQLETQRQYYESLLAEAK 211 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~yyE~~l~~~~ 211 (341)
.++.-+|.-+=+++-+++++.|++.=.++.
T Consensus 250 ~~~~~k~~~~t~~~~e~~~~~~~~~~~~~~ 279 (608)
T KOG2701|consen 250 RAITGKYSVTTKLLEESDFQSYAEFKNEVE 279 (608)
T ss_pred hhhhcccccccHHHHHHHHHHHHHhhhhhh
Confidence 355666777777888999999987755544
No 428
>PTZ00464 SNF-7-like protein; Provisional
Probab=25.03 E-value=5.8e+02 Score=23.93 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHhHhHHHHHHhHhHhh
Q 019425 281 ATILDLEEQIRDLTVYI 297 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~l 297 (341)
+.|.+|.++++|.|-+-
T Consensus 124 d~Vd~l~Dei~E~~e~~ 140 (211)
T PTZ00464 124 DKVEDLQDELADLYEDT 140 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666777666543
No 429
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.95 E-value=6.6e+02 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 222 VEKAVASKMQDIQNELDICE 241 (341)
Q Consensus 222 ~ek~~~~k~~~l~~kl~kl~ 241 (341)
+++++...++.++.++.+.+
T Consensus 163 iE~~l~~ai~~~~~~~~~~~ 182 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQ 182 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 430
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.92 E-value=3.4e+02 Score=21.17 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019425 232 DIQNELDIC 240 (341)
Q Consensus 232 ~l~~kl~kl 240 (341)
.|..+.++|
T Consensus 16 ~L~eEGekL 24 (74)
T PF12329_consen 16 QLMEEGEKL 24 (74)
T ss_pred HHHHHHHHH
Confidence 333333333
No 431
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.84 E-value=5.1e+02 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=12.8
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
..+++.+.+|+.+..|+-.-|
T Consensus 138 ~~k~~a~~~l~~~a~~lA~~i 158 (181)
T PRK13454 138 EIRAGALESVEEVAKDTAEAL 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777765443
No 432
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.76 E-value=5.1e+02 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=14.4
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-+.+|+.|+-||-+-+
T Consensus 132 Ek~~a~~~l~~ei~~lav~~ 151 (184)
T CHL00019 132 EQQRAINQVRQQVFQLALQR 151 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556778888888887655
No 433
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=24.74 E-value=75 Score=29.48 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=29.8
Q ss_pred cccccccceeeeeeeccchh-HHHHhhhhcCCceeeeccccEEE--EecCCcee
Q 019425 85 FCGSHIDHVEELIFIRYKEG-HAVRHWKDTQHWYSLDLRTQQIW--DYVGDNYV 135 (341)
Q Consensus 85 fC~~~~e~w~cL~c~Ry~~~-Ha~~H~~et~H~~am~l~t~rVW--dY~~D~yV 135 (341)
|+--.+.+..|+.||++..+ =-..||..+++..++-+...-|| |-.|..|.
T Consensus 80 ~IR~RD~~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~ 133 (189)
T PF05766_consen 80 YIRLRDAGKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHL 133 (189)
T ss_pred HHHHHhcCCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCcccccc
Confidence 34344457788888875432 12347777776666666655555 55555443
No 434
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=24.64 E-value=5.6e+02 Score=23.66 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019425 196 LETQRQYYESLLAEAKS 212 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~ 212 (341)
||.|=.|--.++..++.
T Consensus 76 LEKQLeyMRkmv~~ae~ 92 (178)
T PF14073_consen 76 LEKQLEYMRKMVESAEK 92 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 435
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.59 E-value=5.6e+02 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 177 FNSKVEAIVDEYNRLLATQLETQRQYYE 204 (341)
Q Consensus 177 ~~~Kie~i~~EY~~LLtSQLEsQR~yyE 204 (341)
-..+-..++.+|...+...++..+.=+.
T Consensus 115 C~N~C~e~~~~~~~~~~~~~~~~~~G~~ 142 (176)
T PF12999_consen 115 CPNTCAELGKEYREELEEEEEIYKEGLK 142 (176)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889988888777766554444
No 436
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.55 E-value=8e+02 Score=26.67 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 263 KKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 263 ~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
.++..|..+......-+.++++.|++...+-. .++++++.+
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~--~e~~~~~~~ 448 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRE--SESKQKLQE 448 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc--hHHHHHHHH
Confidence 34444444444444455566666666666655 455555544
No 437
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.51 E-value=6.5e+02 Score=27.48 Aligned_cols=7 Identities=0% Similarity=-0.230 Sum_probs=3.3
Q ss_pred Cceeeec
Q 019425 115 HWYSLDL 121 (341)
Q Consensus 115 H~~am~l 121 (341)
+++++..
T Consensus 228 ~ivaIgp 234 (656)
T PRK06975 228 PLVAPHA 234 (656)
T ss_pred eEEEeCH
Confidence 3455554
No 438
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.50 E-value=4.8e+02 Score=22.77 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 019425 232 DIQNELD 238 (341)
Q Consensus 232 ~l~~kl~ 238 (341)
.|+..++
T Consensus 45 lLq~e~~ 51 (160)
T PF13094_consen 45 LLQEEIE 51 (160)
T ss_pred HHHHHHH
Confidence 3333333
No 439
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=24.50 E-value=1.8e+02 Score=25.62 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 248 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 248 ~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
..|+.=|..+...+..+++ .+...++.||..|.+|.+.+.|
T Consensus 131 ~~L~~Pll~~~~~l~~~~~----~L~~~l~~KD~~i~~l~~~~~~ 171 (171)
T PF09302_consen 131 SHLNSPLLRMSSALQRQVE----SLKDLLKEKDKEIEKLRDKLED 171 (171)
T ss_dssp HHTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccC
Confidence 4566666666666666653 3445678899999999887654
No 440
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=24.26 E-value=9e+02 Score=26.49 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=10.6
Q ss_pred cCCcEEeecCCCCCC
Q 019425 312 IKGGTVLPVSYQQSS 326 (341)
Q Consensus 312 i~~Gti~~~~~~~~~ 326 (341)
-.+|.|.++|-+...
T Consensus 577 a~dGsi~l~pr~~~~ 591 (604)
T KOG3863|consen 577 AADGSIKLAPREKRQ 591 (604)
T ss_pred hccCceeecchhhcc
Confidence 478999988855533
No 441
>PRK10869 recombination and repair protein; Provisional
Probab=24.20 E-value=6.6e+02 Score=26.78 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 019425 205 SLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI-EEREITSLRLRDATI 283 (341)
Q Consensus 205 ~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l-ee~~~~~~~~k~~~i 283 (341)
..|..+++++-..+.+.++ ..++++.+|+.+..--..+.+|.+.+.+-.+.+...-++| +.|.+.+.+..
T Consensus 306 ~~l~~L~rKyg~~~~~~~~-----~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~---- 376 (553)
T PRK10869 306 SKQISLARKHHVSPEELPQ-----HHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELA---- 376 (553)
T ss_pred HHHHHHHHHhCCCHHHHHH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HhHHHHHHhH
Q 019425 284 LDLEEQIRDL 293 (341)
Q Consensus 284 ~dL~EQlrDL 293 (341)
..+.++++||
T Consensus 377 ~~v~~~L~~L 386 (553)
T PRK10869 377 QLITESMHEL 386 (553)
T ss_pred HHHHHHHHHc
No 442
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.10 E-value=3.7e+02 Score=21.43 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHhHhHHHHHHhHhHhhh-hHHHH
Q 019425 278 LRDATILDLEEQIRDLTVYIE-AQKTL 303 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~le-aq~ki 303 (341)
.+..+..-|.-.+.++|.-+. .|..+
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777776443 34443
No 443
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.87 E-value=4.4e+02 Score=22.16 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=12.5
Q ss_pred HHHHHhHhHHHHHHhHhHh
Q 019425 278 LRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~ 296 (341)
+++.-+.+|+.++-||-+-
T Consensus 113 e~~~a~~~l~~~v~~la~~ 131 (140)
T PRK07353 113 QKQAALAQLEQQVDALSRQ 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445667778887777553
No 444
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=23.86 E-value=4.9e+02 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=15.8
Q ss_pred HHHHHHhHhHHHHHHhHhHhh
Q 019425 277 RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+++.-+.+|+.|+.||-+-+
T Consensus 115 ~ek~~a~~~L~~~i~~la~~~ 135 (164)
T PRK14473 115 QERQRMLSELKSQIADLVTLT 135 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566788899998887765
No 445
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.85 E-value=1.7e+02 Score=25.35 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.6
Q ss_pred HHHHhHhHHHHHHhHhHhhhhHH
Q 019425 279 RDATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~leaq~ 301 (341)
.++++++|++++.+|+.-++.|+
T Consensus 110 ~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 110 LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777666554
No 446
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.57 E-value=2.1e+02 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 019425 198 TQRQYYESLLAEAKSKR 214 (341)
Q Consensus 198 sQR~yyE~~l~~~~~~~ 214 (341)
+||.-|-.+..+++++.
T Consensus 86 sQRDRFR~Rn~ELE~el 102 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988764
No 447
>PRK12705 hypothetical protein; Provisional
Probab=23.53 E-value=9.2e+02 Score=25.74 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019425 195 QLETQRQYY 203 (341)
Q Consensus 195 QLEsQR~yy 203 (341)
-|-.++.||
T Consensus 24 ~~~~~~~~~ 32 (508)
T PRK12705 24 LLKKRQRLA 32 (508)
T ss_pred HHHHHHHHH
Confidence 333333333
No 448
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.35 E-value=5.2e+02 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-+.+|+.|+-||-+-+
T Consensus 124 e~~~a~~el~~ei~~lA~~~ 143 (173)
T PRK13460 124 AKGKALSQLQNQIVEMTITI 143 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888887765
No 449
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.33 E-value=6.1e+02 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQL---ETQRQYYESLL 207 (341)
Q Consensus 182 e~i~~EY~~LLtSQL---EsQR~yyE~~l 207 (341)
..|...|...|..|+ -++-.||+.+-
T Consensus 71 ~~V~R~~D~fl~~q~r~~~s~~~~~~~~~ 99 (627)
T PRK06665 71 QSIERIRDELLDSRIIEESGRLGYWKTKD 99 (627)
T ss_pred eeEEEhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666 34455666653
No 450
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.20 E-value=2.3e+02 Score=22.50 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=20.3
Q ss_pred HHHHhHhHHHHHHhH-hHhhhhHHHHhccCCCCCcCCcEEeec
Q 019425 279 RDATILDLEEQIRDL-TVYIEAQKTLTNMTDSDGIKGGTVLPV 320 (341)
Q Consensus 279 k~~~i~dL~EQlrDL-mf~leaq~ki~~~~~~~ei~~Gti~~~ 320 (341)
.+.++..|++||=|+ ..||+ +....|.|+-+
T Consensus 14 Le~~L~~lE~qIy~~Et~YL~-----------~~~~~GNiikG 45 (80)
T PF09340_consen 14 LEKDLAALEKQIYDKETSYLE-----------DTSPYGNIIKG 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------ccCcCCCCeeC
Confidence 345567777777776 66776 23577778743
No 451
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.99 E-value=9.1e+02 Score=25.52 Aligned_cols=11 Identities=9% Similarity=0.492 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 019425 199 QRQYYESLLAE 209 (341)
Q Consensus 199 QR~yyE~~l~~ 209 (341)
-|.||-.++-.
T Consensus 155 eqef~vnKlm~ 165 (552)
T KOG2129|consen 155 EQEFFVNKLMN 165 (552)
T ss_pred HHHHHHHHHHH
Confidence 34466655443
No 452
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.99 E-value=9.5e+02 Score=25.71 Aligned_cols=61 Identities=28% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHHH----HH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 019425 200 RQYYESLLAEAKSKRESLIPETVEKAVA----SK--MQDIQNELD--ICEEAKKAVADVNSKLIKNQEI 260 (341)
Q Consensus 200 R~yyE~~l~~~~~~~~~~i~~~~ek~~~----~k--~~~l~~kl~--kl~~E~~~~~~ln~~L~~nq~~ 260 (341)
-+.||...+.++.+.-..+.+.-.+.+. .+ ...-+.+|. ..+.|...-+-+|+-|.+.|+.
T Consensus 116 ~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e~e~qr~~n~ElvrmQEe 184 (630)
T KOG0742|consen 116 TKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARKRYEDELEAQRRLNEELVRMQEE 184 (630)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 4568887777776554333332222111 11 112223333 2344555556778887777664
No 453
>PRK00736 hypothetical protein; Provisional
Probab=22.73 E-value=3.6e+02 Score=20.70 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 019425 248 ADVNSKLIK 256 (341)
Q Consensus 248 ~~ln~~L~~ 256 (341)
.+||+.+.+
T Consensus 22 e~Ln~~v~~ 30 (68)
T PRK00736 22 EELSDQLAE 30 (68)
T ss_pred HHHHHHHHH
Confidence 345555543
No 454
>PRK00846 hypothetical protein; Provisional
Probab=22.63 E-value=4e+02 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAV----ADVNSKLIK 256 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~----~~ln~~L~~ 256 (341)
+.++++|+.|+....+. .+||+.+.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~ 38 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALAD 38 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544443 345555443
No 455
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=22.56 E-value=70 Score=33.04 Aligned_cols=61 Identities=25% Similarity=0.219 Sum_probs=41.2
Q ss_pred cccccccccceeeeeeeccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeeccccCCCCceeeec
Q 019425 83 VRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMN 151 (341)
Q Consensus 83 c~fC~~~~e~w~cL~c~Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl~q~k~DGKlVEl~ 151 (341)
|.+||.+-+ ||-...||..|..+++|-....+.|...+.---++|= -..-++.|||.+--|
T Consensus 44 clvcg~y~q-------gr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~e-i~d~s~~~ikhslkp 104 (442)
T KOG2026|consen 44 CLVCGKYFQ-------GRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYE-IDDPSLGDIKHSLKP 104 (442)
T ss_pred eeeeCchhh-------CcCccccchhccccccccceeccccceeEEecchhcc-ccCchhhhhhccccc
Confidence 555555444 5778899999999999999999999666543333332 223467778766444
No 456
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.52 E-value=5.2e+02 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=13.6
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-+.+|+.++.|+.+-+
T Consensus 116 ek~~a~~~l~~~i~~la~~~ 135 (164)
T PRK14471 116 EKNAAMAEIKNQVANLSVEI 135 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888876654
No 457
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=22.37 E-value=4.8e+02 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.5
Q ss_pred HHHHHhHhHHHHHHhHhHhh
Q 019425 278 LRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~l 297 (341)
++..-+.+|+.|+.||-+-+
T Consensus 103 e~~~a~~~l~~~~~~lA~~~ 122 (147)
T TIGR01144 103 EKEQAREELRKQVADLSVLG 122 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888887655
No 458
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.20 E-value=3.7e+02 Score=26.01 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=12.0
Q ss_pred HHHHHHhHhHHHHHHhH
Q 019425 277 RLRDATILDLEEQIRDL 293 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDL 293 (341)
+.-.++|.+|+.++|.|
T Consensus 242 ~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 242 RREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33346788888888865
No 459
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.09 E-value=9.4e+02 Score=25.32 Aligned_cols=28 Identities=4% Similarity=-0.052 Sum_probs=18.1
Q ss_pred eeeeccccEEEEecCCceeeeccccCCC
Q 019425 117 YSLDLRTQQIWDYVGDNYVHRLNQSKAD 144 (341)
Q Consensus 117 ~am~l~t~rVWdY~~D~yVhrl~q~k~D 144 (341)
.-+.+...+||.|..-.|.....+++++
T Consensus 69 ~~~~~~~~~~~~~~~~p~r~~~~~~~~~ 96 (447)
T KOG2751|consen 69 SGKTPQESSVVVYFSPPVRDSDTEHNLS 96 (447)
T ss_pred CCcchhhccceecccCcccccccccccc
Confidence 4455667788887776666666555544
No 460
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=22.02 E-value=30 Score=36.58 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 260 IMRKKFKEIEEREITSLRLRDAT 282 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~ 282 (341)
.|++++++-|++++.+..+||-+
T Consensus 412 qyq~RLedSE~RLr~QQ~eKd~q 434 (495)
T PF12004_consen 412 QYQARLEDSEERLRRQQEEKDSQ 434 (495)
T ss_dssp -----------------------
T ss_pred HHHHhhhhhHHHHHHHhhhhHHH
Confidence 34445555555555444444433
No 461
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.99 E-value=4.1e+02 Score=21.10 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 019425 248 ADVNSKL 254 (341)
Q Consensus 248 ~~ln~~L 254 (341)
.+||..|
T Consensus 25 eeLn~~l 31 (72)
T COG2900 25 EELNDAL 31 (72)
T ss_pred HHHHHHH
Confidence 3444444
No 462
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.97 E-value=1.8e+02 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=23.4
Q ss_pred HHHHhHhHHHHHHhHhHhhhhHHHHhccC
Q 019425 279 RDATILDLEEQIRDLTVYIEAQKTLTNMT 307 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~leaq~ki~~~~ 307 (341)
..++++.|++||+-|---+.-.+|..-.+
T Consensus 4 LrqQv~aL~~qv~~Lq~~fs~yKKa~lFp 32 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAAFSQYKKAELFP 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34788999999999988888888886643
No 463
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.95 E-value=5.4e+02 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 270 EREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 270 e~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
++++..++.||.+|..|++++.++.-
T Consensus 97 ~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 97 KKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678999999999999999865
No 464
>PF01806 Paramyxo_P: Paramyxovirinae P phosphoprotein C-terminal region; InterPro: IPR002693 Sendai virus is a member of the Paramyxovirinae family. Its negative-sense ssRNA genome is packaged by the viral nucleoprotein (N) within a helical nucleocapsid. Paramyxovirinae use this N-RNA (nucleoprotein-RNA) complex as a template for both transcription and replication. During viral genome replication, the synthesis of viral RNA and its encapsidation by N are concomitant. Viral transcription and replication are carried out by viral RNA-dependent RNA polymerase, which consists of two proteins: L polymerase and phosphoprotein P. The L polymerase carries the enzyme activity. Phosphoprotein P binds the viral nucleocapsid, and positions the L polymerase on the template for transcription and replication formed by nucleoprotein-RNA (N-RNA) []. This entry represents phosphoprotein P from Sendai virus as well as from close family members. Phosphoprotein P, an indispensable subunit of the viral polymerase complex, is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0019079 viral genome replication; PDB: 1R4G_A 1EZJ_A.
Probab=21.90 E-value=5.2e+02 Score=24.63 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
....|+.+.++.+..++++.+..+++.+.|..||...
T Consensus 63 ~~~nk~~q~q~~l~~ik~~~~~~~e~hrR~~E~QkEQ 99 (248)
T PF01806_consen 63 DHDNKLNQIQQELKQIKEDLKKMDESHRRFIENQKEQ 99 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899999999999999999999988764
No 465
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.86 E-value=4.3e+02 Score=21.30 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019425 260 IMRKKFKEIEE 270 (341)
Q Consensus 260 ~~~~k~~~lee 270 (341)
.++.+++.+++
T Consensus 78 ~lk~~i~~le~ 88 (108)
T PF02403_consen 78 ELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 466
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.78 E-value=1.3e+03 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLET 198 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEs 198 (341)
.|++-+..+|++++.+--+.
T Consensus 415 ~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 415 KKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566777777766544433
No 467
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=21.58 E-value=5.3e+02 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 251 NSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~~lee 270 (341)
|..+......++..++..+.
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~ 111 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEK 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 468
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.48 E-value=6.1e+02 Score=25.21 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+-.|+++|+..|++|.+|++.-+=--+.|.+-...-+.++++...+.....++..--++..+..-+
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
No 469
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.47 E-value=31 Score=37.63 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=8.1
Q ss_pred eeeeeEEeccCCC
Q 019425 42 ERRGLVHLFRGTS 54 (341)
Q Consensus 42 ~t~Gi~Hlf~~~~ 54 (341)
+.+||..+|++.-
T Consensus 75 l~~~i~~yy~e~L 87 (713)
T PF05622_consen 75 LLRNIKSYYQEEL 87 (713)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHc
Confidence 3456677777653
No 470
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.44 E-value=1.4e+03 Score=27.00 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019425 196 LETQRQYYESLLAEAKSK 213 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~~ 213 (341)
|+.|+.+++.++..++.+
T Consensus 178 lqae~~~l~~~~~~l~~~ 195 (1109)
T PRK10929 178 LQAESAALKALVDELELA 195 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
No 471
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.41 E-value=5.2e+02 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=10.7
Q ss_pred HHHHHHhHhHHHHHHhHhH
Q 019425 277 RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf 295 (341)
+...++|.+|++++..+--
T Consensus 76 ~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 76 KELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566666666665543
No 472
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.27 E-value=3.1e+02 Score=19.50 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 265 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~ 265 (341)
++++.....|....+.|..+-..+..-|..|......+..++
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 473
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.26 E-value=3.8e+02 Score=20.43 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 222 VEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 222 ~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
....+...+.+.+...-.++..++....-|+.|....+.++.+++++..+
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 474
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=1.2e+03 Score=26.11 Aligned_cols=109 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQ 258 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq 258 (341)
+|+..++++=.-.=.+|+++|-.+-..++...+ .+...++ .+.....++|..+.++..++.+-.+-|-.|+..-
T Consensus 418 ~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-----~ll~e~~-t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~ 491 (698)
T KOG0978|consen 418 SEIRKQALDDAERQIRQVEELSEELQKKEKNFK-----CLLSEME-TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSER 491 (698)
T ss_pred HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HhHhHHHHHHhH
Q 019425 259 EIMRKKFKEIEEREITSLRLRDA----------TILDLEEQIRDL 293 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~~----------~i~dL~EQlrDL 293 (341)
......++.|.+........... .|..|+||+|-|
T Consensus 492 ~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 492 IKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 475
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.22 E-value=5.1e+02 Score=22.68 Aligned_cols=67 Identities=13% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 222 VEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 222 ~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+.+.....+++++.+++.+.+|+..++ +-..++.---++.+++|=-+..++=|..+++-..|-+++.
T Consensus 54 i~~~Qr~~l~~l~~~l~~l~~eL~~Lr---~~~l~rRPLtk~dVeeLV~~IseQPK~IEkQte~LteEL~ 120 (126)
T PF07028_consen 54 IQESQRSELKELKQELDVLSKELQALR---KEYLERRPLTKEDVEELVLRISEQPKFIEKQTEALTEELT 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
No 476
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.18 E-value=9.9e+02 Score=26.92 Aligned_cols=116 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhcc---cHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 019425 176 LFNSKVEAIVDEYNRLLATQL--ETQRQYYESLLAEAKSKRESL---IPETVEKAVASKMQD------IQNELDICEEAK 244 (341)
Q Consensus 176 ~~~~Kie~i~~EY~~LLtSQL--EsQR~yyE~~l~~~~~~~~~~---i~~~~ek~~~~k~~~------l~~kl~kl~~E~ 244 (341)
...+|++.+-.|||+-|..-. -+=+.=+|.+=+..+.+.-.+ -...+.+.+.+|+.+ +..+++.+..|.
T Consensus 508 ~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev 587 (762)
T PLN03229 508 VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEV 587 (762)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HhHhHHHHHH
Q 019425 245 KAV-----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDA--------------------TILDLEEQIR 291 (341)
Q Consensus 245 ~~~-----~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~--------------------~i~dL~EQlr 291 (341)
... ..++..|....+.+++.++..-+..-.....+-. +|+.|++||+
T Consensus 588 ~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIk 659 (762)
T PLN03229 588 ASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEIN 659 (762)
T ss_pred HhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHH
No 477
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.15 E-value=8.7e+02 Score=24.61 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 200 RQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAV--------ADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 200 R~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~--------~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
|.++|.. ....+++...+......|+++..+..+. +-||..|......++....++.+-
T Consensus 219 R~hleqm-------------~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 219 RSHLEQM-------------KQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred HHHHHHH-------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 272 EITSLRLRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 272 ~~~~~~~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
..+. +....-|.++..++..++-=|+..+.
T Consensus 286 ~~~y-~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 286 QEKY-KQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHH-HHHhhHHHHHHHHHHHHHHHHHHHHH
No 478
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.10 E-value=7e+02 Score=23.47 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 191 LLATQL-ETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 191 LLtSQL-EsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
||..|| |+|-.-=-..=+-+.-+..-.-..+.-+.....+..|+..+..-..|+.....--.......+.++.++..++
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 270 EREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 270 e~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.++.+|++.+.++
T Consensus 94 -----------~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 94 -----------AELAELREELACA 106 (202)
T ss_pred -----------HHHHHHHHHHHhh
No 479
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=20.87 E-value=4.6e+02 Score=27.09 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVA--------------DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~--------------~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+..|+..++..+..++..+..++ .-|++|..+-....... ..++..++++...+++|..|+-|+.
T Consensus 282 ~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~i~k~~~q~~ 360 (391)
T smart00435 282 LQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEK-KKEEKKKKQIERLEERIEKLEVQAT 360 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 019425 292 D 292 (341)
Q Consensus 292 D 292 (341)
|
T Consensus 361 ~ 361 (391)
T smart00435 361 D 361 (391)
T ss_pred h
No 480
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=20.86 E-value=5.2e+02 Score=21.89 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKLIK----NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~----nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+...++++.++..+..-......+...-+.|.. +-..+..++..+..+..............|+..+.-.-+|-+.
T Consensus 36 ~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~ 115 (213)
T cd00176 36 EALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDA 115 (213)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 019425 300 QK 301 (341)
Q Consensus 300 q~ 301 (341)
..
T Consensus 116 ~~ 117 (213)
T cd00176 116 DD 117 (213)
T ss_pred HH
No 481
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=20.83 E-value=1.6e+02 Score=26.80 Aligned_cols=54 Identities=24% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHh
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~ 296 (341)
+.+.+.|...++|..+.+..-++.|-.- |-...+++++..|+ .|++..|||.+|
T Consensus 33 t~~Yk~LKa~vdK~sKKLE~~K~~~~~s--~~k~~kkKieR~Ee--------------~LK~~nRDlSl~ 86 (186)
T KOG3312|consen 33 TDKYKRLKAEVDKQSKKLEKKKEENGDS--NDKSKKKKIERVEE--------------KLKNNNRDLSLF 86 (186)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccc--hhhHHHHHHHHHHH--------------HHhccccchHHH
No 482
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=20.79 E-value=7.5e+02 Score=23.67 Aligned_cols=72 Identities=22% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHhHHHHHHhHhHhhhh
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR----LRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~----~k~~~i~dL~EQlrDLmf~lea 299 (341)
.|--+..+.-..+..+.+.++.-++.|......++.|.+.-|.+..+... ...++|+-|++-.|-|...|++
T Consensus 178 RKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 178 RKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 483
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.76 E-value=8.4e+02 Score=24.42 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHhHHHHHHh
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR--LRDATILDLEEQIRD 292 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~--~k~~~i~dL~EQlrD 292 (341)
....+++|.+-+++-+.+=.-|+........+..+..+.|.+.+...+ .++++.+++.+..++
T Consensus 115 ~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~~ 179 (309)
T TIGR00570 115 LENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKN 179 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.73 E-value=3.9e+02 Score=29.65 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 222 VEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI--MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 222 ~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~--~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+...+..-+.-|..+++.++-+.+--..+++.+.++|.. ++++++.+.+++-.. ...+.++++|++.+..+-+==++
T Consensus 187 ~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~-~~~~~~~~~~~~k~~~~~~~~~~ 265 (775)
T TIGR00763 187 IEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIE-KDDKDELEKLKEKLEELKLPEEV 265 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHhcCCCHHH
Q ss_pred HHHHhc
Q 019425 300 QKTLTN 305 (341)
Q Consensus 300 q~ki~~ 305 (341)
.+++.+
T Consensus 266 ~~~~~~ 271 (775)
T TIGR00763 266 KKVIEK 271 (775)
T ss_pred HHHHHH
No 485
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.72 E-value=1.5e+03 Score=27.10 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAKSKRE-----SLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~~~~-----~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
++++.|...|..-.++..=.. ......+......++-....+++.+.++...+..--+..+...+....++..++
T Consensus 231 ~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 310 (1353)
T TIGR02680 231 QLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALE 310 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-----------HhHhHHHHHHhH
Q 019425 270 EREITSLRLRDA-----------TILDLEEQIRDL 293 (341)
Q Consensus 270 e~~~~~~~~k~~-----------~i~dL~EQlrDL 293 (341)
.+........++ +..+|++|++++
T Consensus 311 ~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~ 345 (1353)
T TIGR02680 311 READALRTRLEALQGSPAYQDAEELERARADAEAL 345 (1353)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
No 486
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.66 E-value=4.6e+02 Score=21.17 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
.++.|+++.=..+.=|.-|...+++-|..|.......+..-..|+.+......+.... ++-||-|.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W----qerLr~LL 73 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW----QERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
No 487
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.57 E-value=9.5e+02 Score=25.87 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh-------hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Q 019425 200 RQYYESLLAEAKS-------KRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA---------------DVNSKLIKN 257 (341)
Q Consensus 200 R~yyE~~l~~~~~-------~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~---------------~ln~~L~~n 257 (341)
+..+++.+..+.+ +................+.+++..++.+.+...... ++-.....+
T Consensus 15 ~~~~~~~l~~L~~lg~vhi~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 94 (646)
T PRK05771 15 KSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEE 94 (646)
T ss_pred HHHHHHHHHHHHhCCCEEEeecccccchhHHhHHHHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 258 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 258 q~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.+...+++.++.++ +.+.++++++|++++..|
T Consensus 95 ~~~~~~~i~~l~~~----~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 95 LEKIEKEIKELEEE----ISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
No 488
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.54 E-value=3.8e+02 Score=20.16 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 236 ELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRD 280 (341)
Q Consensus 236 kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~ 280 (341)
+++.++.+...+...=..+++..+.+++.++++++..+..+...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.54 E-value=6.2e+02 Score=25.07 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 194 TQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 194 SQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
...+.+-.-.+..|.++..+.+. +....+ ....+.+.|+.+++.++..+.....|-.+|.....-|...+..++++..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~-l~~~~~-~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAA-LQKEYE-EAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Q ss_pred HHH
Q 019425 274 TSL 276 (341)
Q Consensus 274 ~~~ 276 (341)
...
T Consensus 309 ~l~ 311 (344)
T PF12777_consen 309 NLV 311 (344)
T ss_dssp HHH
T ss_pred ccH
No 490
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=20.48 E-value=9.2e+02 Score=24.59 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------hhcccHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSK----------------------RESLIPETVEKAVASKMQDIQNE 236 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~----------------------~~~~i~~~~ek~~~~k~~~l~~k 236 (341)
+++++...-....|.+++..||...|..+..+--+ ...+..+.+.+-+..-++-...+
T Consensus 101 ~~f~s~~~~~~~~l~~~~y~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~vs~~a~t~edAq~~L~gyI~~~s~~ 180 (347)
T COG3765 101 KQFSSSDSLREFWLQTDYYKQKLTGESKIDAALLDRLINNISFKPGGFDLATNLTVSFTAETAEDAQDLLRGYIAFVSQK 180 (347)
T ss_pred HHHhcchHHHHHHHhccchHHHHhccccchHHHHHHHHHhhhccCCccccchhheeeeecCCcHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 237 LDICEEAKKAVADVNSKLIKNQEIMRK----KFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 237 l~kl~~E~~~~~~ln~~L~~nq~~~~~----k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+. ++++..+..+.+.-.. +++..+++.++. +|.+|+.|++-++
T Consensus 181 v~---------~el~~~l~~~~~~rt~~~~~kl~~~~~~ak~~---~d~rI~ql~~Al~ 227 (347)
T COG3765 181 VA---------QELLDNLKDAIALRTRQLKDKLKRQEEVAKAQ---KDVRIQQLKEALK 227 (347)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 491
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.45 E-value=1.4e+03 Score=26.73 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019425 196 LETQRQYYESLLAEAKSKRE--SLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNS---KLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 196 LEsQR~yyE~~l~~~~~~~~--~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~---~L~~nq~~~~~k~~~lee 270 (341)
|+.++..-|+.+..++.+.+ .....+.+.++.+-...+...-.++...++....+|. ..+..++....++..+-+
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~ 706 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDR 706 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 271 REITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 271 ~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
...+.-..-.+.|.+-+++..+..-+.
T Consensus 707 qkee~~~~~~~~I~~~~~~~~~~~~~~ 733 (1072)
T KOG0979|consen 707 QEEEYAASEAKKILDTEDMRIQSIRWH 733 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
No 492
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.39 E-value=6e+02 Score=22.42 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=0.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 215 ESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREI 273 (341)
Q Consensus 215 ~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~ 273 (341)
++.+.+|++ -...+...|+...+++.+-. +++|+.+..-+..++.+++.++.+..
T Consensus 83 Ek~~~eA~~-~~~~ri~~l~~~~~~l~~~i---~~~~~~~~~l~~~L~~k~~~~~~~~~ 137 (144)
T PRK14011 83 EKDVSEVIE-DFKKSVEELDKTKKEGNKKI---EELNKEITKLRKELEKRAQAIEQRQA 137 (144)
T ss_pred EecHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=9.5e+02 Score=24.74 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019425 205 SLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATIL 284 (341)
Q Consensus 205 ~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~ 284 (341)
.++..+.-....-+..+.-..+..+.++++.++.-+..+..+|+-+-+.|........++.+++-+..-..++.+-+.+.
T Consensus 307 ~kis~val~vtnGi~Qa~t~~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdtlh 386 (400)
T COG5613 307 AKISTVALGVTNGIRQAGTTALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDTLH 386 (400)
T ss_pred HHHHHHHHHhhhhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hH
Q 019425 285 DL 286 (341)
Q Consensus 285 dL 286 (341)
+|
T Consensus 387 nl 388 (400)
T COG5613 387 NL 388 (400)
T ss_pred hh
No 494
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.33 E-value=7e+02 Score=25.85 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 233 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
|.++-++..+++...++..+.+.+-+..+++++.+.+.+.+..+..-.++-..+.+++.+
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~ 89 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRA 89 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.28 E-value=6.6e+02 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 235 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI-------EEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 235 ~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l-------ee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.++-.+-++++++..--+.|++.+....++++.+ .+...+..+...++|.+|++++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.28 E-value=8.8e+02 Score=24.33 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------
Q 019425 193 ATQLETQRQYYESLLAEAKSKR-------ESLIPETVEKAVASKMQDIQNELDICEEAKKAVA---DVNSKL-------- 254 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~-------~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~---~ln~~L-------- 254 (341)
.+||+..|.--|++|-.-.+.. ++++.++++..-....++|..+|..|..-++.++ .|-++|
T Consensus 26 v~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQE 105 (324)
T PF12126_consen 26 VSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQE 105 (324)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHhHhHhh
Q 019425 255 -IKNQEIMRKKFKEIEEREITSLRL--RDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 255 -~~nq~~~~~k~~~lee~~~~~~~~--k~~~i~dL~EQlrDLmf~l 297 (341)
.+.+..+++.+..|..+.=..++. +-+.-.|-+--|.||+-.|
T Consensus 106 VLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~L~scI 151 (324)
T PF12126_consen 106 VLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARLQDLVSCI 151 (324)
T ss_pred HHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHHHHHHHHH
No 497
>PRK08724 fliD flagellar capping protein; Validated
Probab=20.23 E-value=4.8e+02 Score=28.91 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 240 CEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 240 l~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
+....+-+..-.+.|.+.++.+..+++.+|+|+..+--.++..|..|+.|.--||-+|
T Consensus 615 I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s~l 672 (673)
T PRK08724 615 IRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGMMNAL 672 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.22 E-value=7.7e+02 Score=23.58 Aligned_cols=65 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 204 ESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLR 277 (341)
Q Consensus 204 E~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~ 277 (341)
|.++.++++.... -...+-+|+.+|+.++.|...|+=.++.+..+.+.++++-+++-..+...++
T Consensus 39 ~~r~~~le~~~~~---------~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 39 EDRVTQLERISNA---------HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.15 E-value=5e+02 Score=21.36 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKL------------------IKNQEIMRKKFKEIEEREITSLRLRDATILD 285 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L------------------~~nq~~~~~k~~~lee~~~~~~~~k~~~i~d 285 (341)
+.+..+++.+..++..++.+++...-.-+.| ....+.....+++--+.....++..++++..
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhH
Q 019425 286 LEEQIRDL 293 (341)
Q Consensus 286 L~EQlrDL 293 (341)
|++++.++
T Consensus 93 l~~~l~e~ 100 (110)
T TIGR02338 93 LREQLKEL 100 (110)
T ss_pred HHHHHHHH
No 500
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=20.14 E-value=6e+02 Score=22.30 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 249 DVNSKLIKNQEIMRKKFKEIE------------------EREITSLRLRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~le------------------e~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
++|.-|.+-...++.+++.+. +.+...++..+.+-.-|+-||+|+=+=|+-..|
T Consensus 15 E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsK 86 (129)
T PF15372_consen 15 ELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQESK 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!