Query 019425
Match_columns 341
No_of_seqs 219 out of 350
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5k_A HD6, histone deacetylas 99.5 1.4E-14 4.7E-19 120.4 4.1 63 76-138 20-87 (109)
2 2i50_A Ubiquitin carboxyl-term 99.5 6.2E-15 2.1E-19 125.3 0.0 65 85-150 47-120 (126)
3 2uzg_A Ubiquitin carboxyl-term 99.4 3.2E-13 1.1E-17 109.8 4.6 56 80-135 25-88 (97)
4 2g45_A Ubiquitin carboxyl-term 99.3 7.8E-13 2.7E-17 112.8 4.3 58 81-138 35-108 (129)
5 2ida_A Hypothetical protein; z 99.2 2.9E-12 9.9E-17 105.2 2.9 59 80-138 18-88 (102)
6 3ihp_A Ubiquitin carboxyl-term 98.8 1E-09 3.4E-14 118.2 3.7 94 43-137 170-288 (854)
7 3mhs_A Ubiquitin carboxyl-term 98.7 7E-09 2.4E-13 103.1 3.9 57 82-138 50-111 (476)
8 2v71_A Nuclear distribution pr 94.3 0.87 3E-05 40.8 13.3 14 229-242 57-70 (189)
9 2dfs_A Myosin-5A; myosin-V, in 93.4 1.1 3.7E-05 49.6 14.9 66 235-300 984-1049(1080)
10 3bas_A Myosin heavy chain, str 92.2 2.4 8E-05 33.2 11.4 68 226-297 19-86 (89)
11 2fxo_A Myosin heavy chain, car 92.0 4.6 0.00016 33.5 13.7 17 277-293 107-123 (129)
12 3ghg_A Fibrinogen alpha chain; 92.0 2 6.9E-05 43.9 13.4 48 232-279 114-161 (562)
13 2ocy_A RAB guanine nucleotide 92.0 4.8 0.00017 34.9 14.1 24 273-296 121-144 (154)
14 3ol1_A Vimentin; structural ge 90.9 3.6 0.00012 33.8 11.7 33 260-292 87-119 (119)
15 3na7_A HP0958; flagellar bioge 90.4 6 0.0002 36.2 14.0 36 255-290 124-159 (256)
16 3oja_B Anopheles plasmodium-re 90.0 6.5 0.00022 39.3 15.1 12 282-293 559-570 (597)
17 3tnu_B Keratin, type II cytosk 88.9 3.2 0.00011 34.4 10.0 53 202-256 12-64 (129)
18 3mq9_A Bone marrow stromal ant 88.8 6.5 0.00022 38.4 13.8 65 232-300 401-469 (471)
19 3tnu_A Keratin, type I cytoske 88.0 2.9 9.8E-05 34.8 9.1 12 202-213 14-25 (131)
20 3hnw_A Uncharacterized protein 87.8 10 0.00035 32.0 12.5 61 229-293 69-129 (138)
21 2w83_C C-JUN-amino-terminal ki 85.8 6.2 0.00021 30.4 9.0 65 180-272 10-74 (77)
22 2jee_A YIIU; FTSZ, septum, coi 82.0 14 0.00048 28.7 9.7 20 247-266 53-72 (81)
23 3ghg_A Fibrinogen alpha chain; 82.0 14 0.00047 37.9 12.2 27 180-206 50-76 (562)
24 3na7_A HP0958; flagellar bioge 82.0 27 0.00093 31.7 13.6 34 258-291 134-167 (256)
25 3oja_B Anopheles plasmodium-re 81.5 37 0.0013 33.7 15.5 14 281-294 565-578 (597)
26 1fxk_A Prefoldin; archaeal pro 81.4 16 0.00056 28.4 10.3 42 248-293 64-105 (107)
27 2zqm_A Prefoldin beta subunit 81.3 18 0.00062 28.5 10.9 42 249-294 70-111 (117)
28 1gs9_A Apolipoprotein E, APOE4 81.2 5.8 0.0002 34.4 8.2 100 184-291 56-160 (165)
29 2b9c_A Striated-muscle alpha t 81.1 21 0.0007 30.5 11.5 96 195-294 42-142 (147)
30 3s4r_A Vimentin; alpha-helix, 80.3 14 0.00047 29.1 9.4 60 229-294 10-69 (93)
31 3mq9_A Bone marrow stromal ant 80.1 35 0.0012 33.1 14.5 19 281-299 443-461 (471)
32 1nfn_A Apolipoprotein E3; lipi 79.0 12 0.00041 33.0 9.7 27 182-208 54-80 (191)
33 3oja_A Leucine-rich immune mol 78.2 21 0.00072 34.9 12.2 18 277-294 459-476 (487)
34 2e7s_A RAB guanine nucleotide 77.1 6.5 0.00022 33.4 7.0 65 227-297 66-133 (135)
35 1i84_S Smooth muscle myosin he 68.6 18 0.00063 40.0 9.9 7 35-41 563-569 (1184)
36 3a7p_A Autophagy protein 16; c 65.6 58 0.002 28.0 10.4 45 226-270 73-117 (152)
37 1wle_A Seryl-tRNA synthetase; 65.2 77 0.0026 32.0 13.0 23 275-297 131-153 (501)
38 1f5n_A Interferon-induced guan 65.0 90 0.0031 32.1 13.7 14 281-294 567-580 (592)
39 1iym_A EL5; ring-H2 finger, ub 64.6 3.6 0.00012 27.8 2.2 41 21-66 6-52 (55)
40 3vkg_A Dynein heavy chain, cyt 62.4 68 0.0023 39.7 13.7 25 187-211 1903-1930(3245)
41 2eqb_B RAB guanine nucleotide 62.1 59 0.002 26.0 10.3 14 280-293 82-95 (97)
42 1ik9_A DNA repair protein XRCC 61.3 53 0.0018 29.5 9.9 44 226-269 151-195 (213)
43 1gd2_E Transcription factor PA 61.0 32 0.0011 25.8 7.1 10 197-206 18-27 (70)
44 3cvf_A Homer-3, homer protein 60.7 40 0.0014 26.0 7.6 18 194-211 2-19 (79)
45 1deq_A Fibrinogen (alpha chain 60.2 1.3E+02 0.0043 29.6 12.9 21 252-272 137-157 (390)
46 3swf_A CGMP-gated cation chann 59.9 43 0.0015 25.5 7.6 39 254-292 12-50 (74)
47 4etp_A Kinesin-like protein KA 59.5 16 0.00054 35.9 6.6 38 229-266 4-41 (403)
48 3n7n_E Monopolin complex subun 58.4 6.8 0.00023 31.3 3.0 64 193-261 13-76 (95)
49 3cvf_A Homer-3, homer protein 58.2 61 0.0021 24.9 8.8 10 278-287 56-65 (79)
50 3swy_A Cyclic nucleotide-gated 57.9 44 0.0015 23.2 6.8 34 256-289 12-45 (46)
51 2fxo_A Myosin heavy chain, car 57.4 78 0.0027 25.9 12.7 51 247-297 67-120 (129)
52 2eqb_B RAB guanine nucleotide 56.2 76 0.0026 25.3 13.2 48 193-242 14-61 (97)
53 3lss_A Seryl-tRNA synthetase; 55.9 53 0.0018 33.1 9.8 24 274-297 118-141 (484)
54 2kiz_A E3 ubiquitin-protein li 55.6 4.1 0.00014 29.0 1.2 43 21-68 15-62 (69)
55 2v71_A Nuclear distribution pr 55.6 1.1E+02 0.0038 27.1 16.0 21 281-301 161-181 (189)
56 1go4_E MAD1 (mitotic arrest de 55.3 79 0.0027 25.3 9.1 28 228-255 12-39 (100)
57 4fla_A Regulation of nuclear P 55.0 99 0.0034 26.3 12.3 70 224-294 75-144 (152)
58 2pms_C Pneumococcal surface pr 54.6 25 0.00086 29.4 6.0 15 278-292 72-86 (125)
59 1f5n_A Interferon-induced guan 54.5 1.2E+02 0.0043 31.0 12.6 18 274-291 567-584 (592)
60 1ic2_A Tropomyosin alpha chain 54.3 67 0.0023 24.2 10.8 12 227-238 5-16 (81)
61 1deq_A Fibrinogen (alpha chain 54.3 1E+02 0.0034 30.3 11.1 73 193-265 55-129 (390)
62 2v66_B Nuclear distribution pr 54.1 88 0.003 25.5 11.0 6 249-254 49-54 (111)
63 2l0b_A E3 ubiquitin-protein li 53.4 4.6 0.00016 30.8 1.3 41 21-66 41-86 (91)
64 3swk_A Vimentin; cytoskeleton, 53.0 56 0.0019 25.2 7.5 66 178-248 6-83 (86)
65 3qne_A Seryl-tRNA synthetase, 52.5 36 0.0012 34.4 7.9 22 276-297 87-108 (485)
66 3vkg_A Dynein heavy chain, cyt 52.3 2E+02 0.0069 35.7 15.4 14 196-209 1908-1921(3245)
67 2ep4_A Ring finger protein 24; 51.2 8.7 0.0003 27.6 2.4 47 20-71 15-66 (74)
68 2dq0_A Seryl-tRNA synthetase; 50.8 57 0.002 32.4 9.1 23 275-297 84-106 (455)
69 3iv1_A Tumor susceptibility ge 50.3 84 0.0029 24.1 11.0 35 235-269 18-52 (78)
70 1m1j_B Fibrinogen beta chain; 50.0 1.2E+02 0.0042 30.4 11.3 68 223-290 95-162 (464)
71 2ect_A Ring finger protein 126 49.7 23 0.0008 25.5 4.6 42 21-67 16-62 (78)
72 3i00_A HIP-I, huntingtin-inter 49.6 1.1E+02 0.0037 25.2 9.8 61 192-261 20-80 (120)
73 1x8y_A Lamin A/C; structural p 48.8 73 0.0025 24.4 7.6 58 195-264 7-65 (86)
74 3nmd_A CGMP dependent protein 48.3 74 0.0025 24.1 7.2 17 276-292 49-65 (72)
75 3lay_A Zinc resistance-associa 47.7 1.1E+02 0.0037 26.6 9.4 28 276-305 115-142 (175)
76 1t6f_A Geminin; coiled-coil, c 47.7 24 0.00081 23.4 3.8 21 274-294 14-34 (37)
77 3r2p_A Apolipoprotein A-I; amp 47.5 1.3E+02 0.0046 25.7 12.0 7 124-130 14-20 (185)
78 4dci_A Uncharacterized protein 47.3 1.3E+02 0.0046 25.6 11.1 36 280-318 83-118 (150)
79 3cve_A Homer protein homolog 1 47.1 90 0.0031 23.6 9.4 10 278-287 50-59 (72)
80 2a01_A Apolipoprotein A-I; fou 47.0 78 0.0027 28.5 8.7 18 249-266 147-164 (243)
81 4h22_A Leucine-rich repeat fli 46.9 1.1E+02 0.0039 24.6 9.9 41 250-291 42-82 (103)
82 1uii_A Geminin; human, DNA rep 46.9 90 0.0031 24.2 7.6 27 230-256 48-74 (83)
83 3oja_A Leucine-rich immune mol 46.8 2.1E+02 0.0071 27.6 17.3 8 200-207 369-376 (487)
84 1wt6_A Myotonin-protein kinase 46.3 1E+02 0.0034 23.9 9.9 13 281-293 59-71 (81)
85 1ic2_A Tropomyosin alpha chain 45.2 95 0.0033 23.3 11.3 9 261-269 46-54 (81)
86 2z5i_A TM, general control pro 44.6 62 0.0021 22.8 6.0 32 226-257 10-41 (52)
87 1ytz_T Troponin T; muscle, THI 44.5 50 0.0017 26.7 6.2 17 277-293 73-89 (107)
88 1gk4_A Vimentin; intermediate 44.1 1E+02 0.0035 23.4 7.8 16 258-273 28-43 (84)
89 2q6q_A Spindle POLE BODY compo 44.1 1E+02 0.0034 23.2 8.5 58 231-292 6-63 (74)
90 2a01_A Apolipoprotein A-I; fou 43.4 1.8E+02 0.0062 26.0 14.5 64 177-240 93-166 (243)
91 1j1d_B Troponin T, TNT; THIN f 42.9 56 0.0019 26.4 6.2 17 277-293 73-89 (106)
92 1vmg_A Hypothetical protein SS 42.7 1.1E+02 0.0039 23.7 7.9 17 283-299 60-76 (95)
93 2k48_A Nucleoprotein; viral pr 42.6 1.3E+02 0.0046 24.3 8.4 18 278-295 86-103 (107)
94 2b9c_A Striated-muscle alpha t 42.5 1.5E+02 0.0053 24.9 13.9 20 279-298 99-118 (147)
95 1x4j_A Ring finger protein 38; 42.1 7.8 0.00027 28.1 0.9 41 21-66 24-69 (75)
96 2l7b_A Apolipoprotein E, APO-E 41.6 74 0.0025 30.1 7.9 22 184-205 64-85 (307)
97 2p2u_A HOST-nuclease inhibitor 41.2 1.4E+02 0.0048 25.6 9.0 60 254-317 32-93 (171)
98 3hnw_A Uncharacterized protein 41.1 1.6E+02 0.0053 24.6 11.5 10 202-211 36-45 (138)
99 2wvr_A Geminin; DNA replicatio 41.1 1.2E+02 0.004 27.4 8.5 33 229-261 116-148 (209)
100 3r2p_A Apolipoprotein A-I; amp 40.9 1.4E+02 0.0049 25.5 9.1 46 227-272 77-127 (185)
101 1x79_B RAB GTPase binding effe 40.4 1.5E+02 0.0051 24.2 9.5 69 230-304 15-90 (112)
102 3a2a_A Voltage-gated hydrogen 40.3 72 0.0025 23.0 5.7 40 245-295 14-53 (58)
103 3trt_A Vimentin; cytoskeleton, 40.0 1.1E+02 0.0037 22.5 10.6 32 181-212 11-42 (77)
104 2lf0_A Uncharacterized protein 39.4 55 0.0019 27.2 5.7 20 227-246 9-28 (123)
105 3nmd_A CGMP dependent protein 39.1 1.1E+02 0.0039 23.1 7.0 20 276-295 42-61 (72)
106 2jee_A YIIU; FTSZ, septum, coi 38.8 1.3E+02 0.0046 23.1 10.8 36 233-268 25-60 (81)
107 2v4h_A NF-kappa-B essential mo 38.5 1.6E+02 0.0055 24.0 10.7 40 252-295 65-104 (110)
108 1ses_A Seryl-tRNA synthetase; 38.3 1.6E+02 0.0054 28.8 9.9 22 276-297 80-101 (421)
109 3ol1_A Vimentin; structural ge 37.9 1.6E+02 0.0054 23.8 11.0 10 203-212 18-27 (119)
110 1x8y_A Lamin A/C; structural p 37.5 51 0.0017 25.3 5.0 17 257-273 29-45 (86)
111 2nrj_A HBL B protein; enteroto 37.4 2.8E+02 0.0094 26.4 12.3 92 199-298 102-193 (346)
112 3bas_A Myosin heavy chain, str 37.3 1.4E+02 0.0047 22.9 10.8 18 230-247 37-54 (89)
113 4fla_A Regulation of nuclear P 36.4 1.9E+02 0.0064 24.5 8.9 8 249-256 86-93 (152)
114 1nfn_A Apolipoprotein E3; lipi 35.6 57 0.0019 28.6 5.7 39 250-291 122-160 (191)
115 1c1g_A Tropomyosin; contractIl 35.2 2E+02 0.0068 24.1 18.1 15 178-192 5-19 (284)
116 3ljm_A Coil Ser L9C; de novo d 34.9 65 0.0022 20.1 4.1 17 226-242 6-22 (31)
117 1gk4_A Vimentin; intermediate 34.4 1.5E+02 0.0051 22.4 9.6 58 195-264 5-63 (84)
118 1lwu_C Fibrinogen gamma chain; 34.3 84 0.0029 30.0 7.0 18 280-297 39-56 (323)
119 3u06_A Protein claret segregat 33.9 68 0.0023 31.5 6.4 10 281-290 52-61 (412)
120 3sjb_C Golgi to ER traffic pro 33.8 63 0.0022 25.6 5.0 38 229-269 50-87 (93)
121 2d8s_A Cellular modulator of i 33.1 24 0.00082 26.6 2.4 46 19-68 14-69 (80)
122 1tu3_F RAB GTPase binding effe 32.7 65 0.0022 24.7 4.7 15 227-241 18-32 (79)
123 3ng2_A RNF4, snurf, ring finge 32.6 10 0.00035 26.7 0.2 49 17-67 7-61 (71)
124 1j1e_C Troponin I, TNI; THIN f 32.6 97 0.0033 27.3 6.6 18 277-294 89-106 (180)
125 3mov_A Lamin-B1; LMNB1, B-type 32.2 51 0.0017 26.0 4.3 25 251-275 32-56 (95)
126 3mq7_A Bone marrow stromal ant 31.8 2.2E+02 0.0074 23.5 11.9 10 187-196 25-34 (121)
127 2aze_B Transcription factor E2 31.6 1.6E+02 0.0055 23.5 7.3 38 279-320 25-70 (106)
128 3s84_A Apolipoprotein A-IV; fo 29.8 3.3E+02 0.011 25.0 15.2 20 179-198 29-48 (273)
129 2ke4_A CDC42-interacting prote 29.7 2.1E+02 0.007 22.6 9.0 31 225-255 19-49 (98)
130 3iox_A AGI/II, PA; alpha helix 29.3 4.6E+02 0.016 26.5 12.8 108 173-281 3-112 (497)
131 3efg_A Protein SLYX homolog; x 29.0 66 0.0022 24.4 4.3 17 281-297 42-58 (78)
132 1lwu_C Fibrinogen gamma chain; 29.0 1.6E+02 0.0054 28.1 7.9 14 228-241 5-18 (323)
133 3s9g_A Protein hexim1; cyclin 28.5 2.3E+02 0.0078 22.7 9.8 26 229-254 38-63 (104)
134 3s84_A Apolipoprotein A-IV; fo 28.0 3.6E+02 0.012 24.8 15.7 17 178-194 72-88 (273)
135 2w83_C C-JUN-amino-terminal ki 27.9 2E+02 0.007 21.9 9.4 50 242-291 23-75 (77)
136 1zxa_A CGMP-dependent protein 27.8 84 0.0029 23.4 4.5 16 276-291 34-49 (67)
137 3f6n_A Virion-associated prote 27.7 2.2E+02 0.0076 23.6 7.5 38 282-325 49-86 (129)
138 2oxj_A Hybrid alpha/beta pepti 27.6 1E+02 0.0035 20.1 4.3 15 230-244 3-17 (34)
139 3tnu_A Keratin, type I cytoske 27.0 2.5E+02 0.0086 22.7 11.8 9 175-183 13-21 (131)
140 2ecl_A Ring-box protein 2; RNF 26.8 12 0.00039 27.9 -0.4 20 47-66 49-73 (81)
141 2lw1_A ABC transporter ATP-bin 26.8 93 0.0032 23.7 4.9 17 281-297 63-79 (89)
142 1m1j_A Fibrinogen alpha subuni 26.5 5.1E+02 0.017 26.1 11.7 74 193-266 53-128 (491)
143 4fi5_A Nucleoprotein; structur 26.4 2.6E+02 0.0091 22.8 8.0 19 277-295 72-90 (113)
144 3swk_A Vimentin; cytoskeleton, 26.3 2.2E+02 0.0074 21.7 9.1 34 232-265 4-37 (86)
145 3trt_A Vimentin; cytoskeleton, 26.3 1.9E+02 0.0065 21.1 10.6 23 192-214 7-29 (77)
146 3mq7_A Bone marrow stromal ant 26.1 2.8E+02 0.0094 22.9 12.3 17 282-298 79-95 (121)
147 3qh9_A Liprin-beta-2; coiled-c 25.8 2.1E+02 0.0071 22.1 6.5 40 251-290 21-63 (81)
148 2lem_A Apolipoprotein A-I; lip 25.5 3.4E+02 0.012 23.7 14.9 107 178-288 60-182 (216)
149 1m1j_A Fibrinogen alpha subuni 25.3 5.4E+02 0.018 25.9 15.2 56 251-306 134-189 (491)
150 3ghg_C Fibrinogen gamma chain; 25.1 5E+02 0.017 25.5 11.7 19 278-296 116-134 (411)
151 3mtu_A Tropomyosin alpha-1 cha 24.6 2.2E+02 0.0075 21.2 8.7 60 225-295 6-65 (75)
152 4emc_A Monopolin complex subun 24.5 3.7E+02 0.013 23.8 9.6 11 283-293 74-84 (190)
153 2zxx_A Geminin; coiled-coil, c 24.5 2.4E+02 0.0082 21.6 8.8 24 231-254 37-60 (79)
154 3lay_A Zinc resistance-associa 24.5 1.2E+02 0.0041 26.4 5.7 21 281-301 113-133 (175)
155 2dq3_A Seryl-tRNA synthetase; 24.4 60 0.002 31.9 4.2 22 276-297 84-105 (425)
156 1wle_A Seryl-tRNA synthetase; 24.4 3.7E+02 0.013 27.0 10.0 22 276-297 125-146 (501)
157 3efg_A Protein SLYX homolog; x 24.1 2.3E+02 0.0079 21.3 7.1 26 233-258 12-41 (78)
158 2d4y_A HAP1, flagellar HOOK-as 23.9 5E+02 0.017 25.1 12.2 19 188-206 3-24 (463)
159 2ecm_A Ring finger and CHY zin 23.9 25 0.00086 23.3 0.9 41 21-66 6-52 (55)
160 2oto_A M protein; helical coil 23.8 3.1E+02 0.011 22.7 12.2 47 247-293 91-140 (155)
161 3mtu_E Head morphogenesis prot 23.7 2.5E+02 0.0084 21.5 6.8 19 254-272 35-53 (77)
162 4fm3_A Uncharacterized hypothe 23.7 2.8E+02 0.0094 22.1 8.2 62 230-291 31-95 (98)
163 3i00_A HIP-I, huntingtin-inter 23.4 3E+02 0.01 22.4 10.0 22 259-280 43-64 (120)
164 3qne_A Seryl-tRNA synthetase, 23.0 3.6E+02 0.012 27.0 9.6 23 276-298 80-102 (485)
165 2xzl_A ATP-dependent helicase 22.7 30 0.001 36.7 1.7 73 80-152 11-101 (802)
166 3lcn_C MRNA transport factor G 22.6 74 0.0025 19.9 2.8 17 190-206 9-25 (29)
167 3tnu_B Keratin, type II cytosk 22.5 3.1E+02 0.01 22.1 12.0 13 260-272 79-91 (129)
168 2ic6_A Nucleocapsid protein; h 22.4 2.6E+02 0.0091 21.3 8.0 19 277-295 55-73 (78)
169 1ezj_A Nucleocapsid phosphopro 22.3 3.1E+02 0.011 22.1 7.5 34 227-260 65-98 (115)
170 3mov_A Lamin-B1; LMNB1, B-type 22.1 2.5E+02 0.0086 21.9 6.6 37 228-264 37-74 (95)
171 2dq0_A Seryl-tRNA synthetase; 22.1 3.3E+02 0.011 26.8 9.1 22 276-297 78-99 (455)
172 3ci9_A Heat shock factor-bindi 22.1 1.9E+02 0.0066 20.0 5.3 9 280-288 37-45 (48)
173 3qfl_A MLA10; coiled-coil, (CC 22.1 2.9E+02 0.0099 21.7 7.4 14 282-295 56-69 (115)
174 3a7p_A Autophagy protein 16; c 21.9 3.8E+02 0.013 22.9 12.3 23 233-255 108-130 (152)
175 3s9g_A Protein hexim1; cyclin 21.9 3.1E+02 0.011 22.0 8.1 28 236-263 66-93 (104)
176 3iv1_A Tumor susceptibility ge 21.4 2.8E+02 0.0095 21.2 9.8 22 247-268 44-65 (78)
177 1cxz_B Protein (PKN); protein- 21.3 2.9E+02 0.0099 21.4 7.3 13 281-293 70-82 (86)
178 3okq_A BUD site selection prot 21.3 3.7E+02 0.013 22.7 11.9 71 228-299 54-125 (141)
179 1ik9_A DNA repair protein XRCC 21.1 4.4E+02 0.015 23.4 12.9 15 276-290 184-198 (213)
180 2oie_A RS21-C6; helix, hydrola 21.0 1.7E+02 0.0057 22.7 5.5 17 283-299 74-90 (111)
181 2ic9_A Nucleocapsid protein; h 20.8 3.2E+02 0.011 21.7 8.0 19 277-295 55-73 (96)
182 1l8d_A DNA double-strand break 20.8 2.9E+02 0.01 21.2 10.3 19 278-296 89-107 (112)
183 2q6q_A Spindle POLE BODY compo 20.7 2.7E+02 0.0093 20.9 8.2 25 247-271 36-60 (74)
184 2wjy_A Regulator of nonsense t 20.7 31 0.0011 36.7 1.3 70 81-150 7-94 (800)
185 3q0x_A Centriole protein; cent 20.4 4.8E+02 0.016 23.6 9.7 12 284-295 209-220 (228)
186 1wlq_A Geminin; coiled-coil; 2 20.4 3E+02 0.01 21.3 8.0 25 231-255 41-65 (83)
187 4dnd_A Syntaxin-10, SYN10; str 20.3 3.6E+02 0.012 22.1 7.6 10 281-290 119-128 (130)
188 3azd_A Short alpha-tropomyosin 20.3 69 0.0024 21.0 2.5 21 225-245 8-28 (37)
No 1
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.48 E-value=1.4e-14 Score=120.36 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=57.6
Q ss_pred CCChhhhcccccccccceeeeeee-----ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeec
Q 019425 76 YLSSDEFVRFCGSHIDHVEELIFI-----RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRL 138 (341)
Q Consensus 76 ~~t~~dlc~fC~~~~e~w~cL~c~-----Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl 138 (341)
.+.....|..|+...++|+||.|| ||.++||..||++|+|+++|+++|.+||||++|.||++.
T Consensus 20 ~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~~ 87 (109)
T 3c5k_A 20 GLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQ 87 (109)
T ss_dssp CCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCCG
T ss_pred CCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEecc
Confidence 344567799999999999999874 999999999999999999999999999999999999874
No 2
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.45 E-value=6.2e-15 Score=125.28 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.7
Q ss_pred cccccccceeeeeee-----cc-chhHHHHhhhh---cCCceeeeccccEEEEecCCceeeeccccCCCCceeee
Q 019425 85 FCGSHIDHVEELIFI-----RY-KEGHAVRHWKD---TQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEM 150 (341)
Q Consensus 85 fC~~~~e~w~cL~c~-----Ry-~~~Ha~~H~~e---t~H~~am~l~t~rVWdY~~D~yVhrl~q~k~DGKlVEl 150 (341)
.|....++|+||.|| || .++||..||.+ |+|+++|+++|.+||||++|.||+ ..+.+.+|++|++
T Consensus 47 ~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v~~ 120 (126)
T 2i50_A 47 ETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVVDY 120 (126)
T ss_dssp TTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHHHH
T ss_pred cccccccceeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHHHH
Confidence 455589999999874 98 67999999999 899999999999999999999998 6678888888875
No 3
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.36 E-value=3.2e-13 Score=109.77 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=50.6
Q ss_pred hhhcccccc-cccceeeee--e-----eccchhHHHHhhhhcCCceeeeccccEEEEecCCcee
Q 019425 80 DEFVRFCGS-HIDHVEELI--F-----IRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYV 135 (341)
Q Consensus 80 ~dlc~fC~~-~~e~w~cL~--c-----~Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yV 135 (341)
...|..|+. ..++|+||. | |||..+||..||.+|+|+++|+++|.+||||.||.||
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 346999994 455699999 5 5999999999999999999999999999999999998
No 4
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.31 E-value=7.8e-13 Score=112.82 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=53.3
Q ss_pred hhcccccccccceeeeeee-----ccc------hhHHHHhhhhcCCceeeeccc-----cEEEEecCCceeeec
Q 019425 81 EFVRFCGSHIDHVEELIFI-----RYK------EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYVHRL 138 (341)
Q Consensus 81 dlc~fC~~~~e~w~cL~c~-----Ry~------~~Ha~~H~~et~H~~am~l~t-----~rVWdY~~D~yVhrl 138 (341)
..|..|+...++|+||.|| ||. ++||..||.+|+|++++++.| .+||||++|.||+..
T Consensus 35 ~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~~V~dp 108 (129)
T 2g45_A 35 WKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDP 108 (129)
T ss_dssp CCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEEECT
T ss_pred CcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCCEeECc
Confidence 4699999999999999875 887 899999999999999999999 699999999999753
No 5
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.22 E-value=2.9e-12 Score=105.21 Aligned_cols=59 Identities=19% Similarity=-0.002 Sum_probs=49.8
Q ss_pred hhhcccccccc----cceeeeeee-----cc-chhHHHHhhhhcCCceee--eccccEEEEecCCceeeec
Q 019425 80 DEFVRFCGSHI----DHVEELIFI-----RY-KEGHAVRHWKDTQHWYSL--DLRTQQIWDYVGDNYVHRL 138 (341)
Q Consensus 80 ~dlc~fC~~~~----e~w~cL~c~-----Ry-~~~Ha~~H~~et~H~~am--~l~t~rVWdY~~D~yVhrl 138 (341)
...|..|+... .+|+||.|| || .++||..||++|+|++++ ++.+.+||||++|+||+..
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~p 88 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDLS 88 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEECT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEECc
Confidence 46788898876 677899875 98 999999999999999554 5557899999999999774
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.84 E-value=1e-09 Score=118.16 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=62.8
Q ss_pred eeeeE---EeccCCCCCCCC---CCCCCcccceecccC--CCC-Chhhhcccccccccceeeeeee-----ccc------
Q 019425 43 RRGLV---HLFRGTSQSYQQ---NPNSRSTCIFVVAVP--NYL-SSDEFVRFCGSHIDHVEELIFI-----RYK------ 102 (341)
Q Consensus 43 t~Gi~---Hlf~~~~~~s~~---~pv~r~~~lcilavP--~~~-t~~dlc~fC~~~~e~w~cL~c~-----Ry~------ 102 (341)
..||| +.++..+..++. +|+|+... ++..+| ..+ .....|..|+...++|+||.|| ||.
T Consensus 170 ~~~i~~~~~~~~~~~~~~w~~~~~~~c~h~~-~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~ 248 (854)
T 3ihp_A 170 VEALLSADSASRKQEVQAWDGEVRQVSKHAF-SLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGG 248 (854)
T ss_dssp HHHHTC----------------CCCBCTTTT-TCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBC
T ss_pred HHHHHhcCCHHHHHHHHhhcCccCCCCcCcc-ccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCC
Confidence 44555 556666665543 56676542 221222 112 1235899999999999999985 776
Q ss_pred hhHHHHhhhhcCCceeeeccc-----cEEEEecCCceeee
Q 019425 103 EGHAVRHWKDTQHWYSLDLRT-----QQIWDYVGDNYVHR 137 (341)
Q Consensus 103 ~~Ha~~H~~et~H~~am~l~t-----~rVWdY~~D~yVhr 137 (341)
++||..||.+|+|++++++.| .+||||.||.||..
T Consensus 249 ~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~ 288 (854)
T 3ihp_A 249 NNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLD 288 (854)
T ss_dssp CSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTEECBC
T ss_pred chHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCeeeC
Confidence 789999999999999999999 99999999999954
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=98.68 E-value=7e-09 Score=103.07 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=51.9
Q ss_pred hccccccc--ccceeeeeee---ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeec
Q 019425 82 FVRFCGSH--IDHVEELIFI---RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRL 138 (341)
Q Consensus 82 lc~fC~~~--~e~w~cL~c~---Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl 138 (341)
-|..|+.. ..+|+||.|| +...+||..|+.+|+|++++++++..||||.||.||...
T Consensus 50 ~C~~c~~~~~~~~~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~ 111 (476)
T 3mhs_A 50 KCGTCHEINSGATFMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNI 111 (476)
T ss_dssp BCTTTCCBCSSSEEEESSSSCEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSC
T ss_pred CcccccCCCCCCceEeCCCCCCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccH
Confidence 49999887 7999999995 566899999999999999999999999999999999754
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.27 E-value=0.87 Score=40.81 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEE 242 (341)
Q Consensus 229 k~~~l~~kl~kl~~ 242 (341)
+..+|+.++..+..
T Consensus 57 ~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 57 RNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.44 E-value=1.1 Score=49.63 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhH
Q 019425 235 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 300 (341)
Q Consensus 235 ~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq 300 (341)
+++..+++|...+++-.+.+.+..+.+++++.++.+++.+.+....+++..|++|+.||.--+..+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333344444444444444444555555555667777777777777433333
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=92.17 E-value=2.4 Score=33.22 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
...++.+++..+.+....++.+..-+..|......+..++.+++++....... ..+|+.+|.||---|
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~----K~eLE~~l~el~~rl 86 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK----NYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 44566677777777777777776666666666555555577777776555443 358888888875443
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.02 E-value=4.6 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=12.8
Q ss_pred HHHHHHhHhHHHHHHhH
Q 019425 277 RLRDATILDLEEQIRDL 293 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDL 293 (341)
+..+.++.+|++||.|+
T Consensus 107 kkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 107 RKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456888888888886
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.02 E-value=2 Score=43.89 Aligned_cols=48 Identities=15% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k 279 (341)
+|+.++..|+++....-..-+.|+.+++..+.+|++||-....+++..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555543334447889999999999999998777666644
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.00 E-value=4.8 Score=34.87 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhHh
Q 019425 273 ITSLRLRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 273 ~~~~~~k~~~i~dL~EQlrDLmf~ 296 (341)
...++.++..+..|++||.+|---
T Consensus 121 ~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 121 TEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999998543
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.93 E-value=3.6 Score=33.84 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 260 IMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 260 ~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
.+..+++.|.++..-..+..+++|.+|+.||.+
T Consensus 87 dLE~~iesL~eEl~FLKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355667777777777777788888888888753
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.39 E-value=6 Score=36.18 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 255 IKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 255 ~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
....+....++..++..........++.+.+++.++
T Consensus 124 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~ 159 (256)
T 3na7_A 124 SEKQEDLKKEMLELEKLALELESLVENEVKNIKETQ 159 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.97 E-value=6.5 Score=39.28 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=4.7
Q ss_pred HhHhHHHHHHhH
Q 019425 282 TILDLEEQIRDL 293 (341)
Q Consensus 282 ~i~dL~EQlrDL 293 (341)
++.+|++++.++
T Consensus 559 ~~~~l~~e~~~~ 570 (597)
T 3oja_B 559 KQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.95 E-value=3.2 Score=34.39 Aligned_cols=53 Identities=8% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 202 YYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 202 yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
+|..++.++....... .+++. .....+.++...+..|.-|+..++..+..|..
T Consensus 12 ~y~~K~eel~~~~~~~-~~~l~-~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRH-GDDLR-NTKHEISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777777766543221 01111 11223444444444454554444444444443
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.81 E-value=6.5 Score=38.39 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhH
Q 019425 232 DIQNELDICEEAKKAV----ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ 300 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~----~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq 300 (341)
-||.+|+.+++-...+ ..-|.....-|+.+.+++-+-+. .+++.+.+|.+|+.||.|+-.-++.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK----KVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555665555433222 23455555555555555433222 24455566777777777776655544
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.01 E-value=2.9 Score=34.78 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh
Q 019425 202 YYESLLAEAKSK 213 (341)
Q Consensus 202 yyE~~l~~~~~~ 213 (341)
+|..++.++...
T Consensus 14 ~y~~K~eel~~~ 25 (131)
T 3tnu_A 14 WFFTKTEELNRE 25 (131)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 677777766543
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.78 E-value=10 Score=31.98 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.+-+++.+.+.+..+...+..-...|.......+.+++.++.+. ....+++.+|++|+..|
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~----~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI----KELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33444445555544444333333334444444444444444332 23346677777777776
No 21
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.78 E-value=6.2 Score=30.41 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQE 259 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~ 259 (341)
-++++..||+.||.++= ++.---.+|=.+++.+.-|...++.-..++.....
T Consensus 10 evEnLi~EN~eLl~TKN----------------------------aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 10 EVENLILENTQLLETKN----------------------------ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 37888888888876542 11111234445555555555555544555555555
Q ss_pred HHHHHHHHHHHHH
Q 019425 260 IMRKKFKEIEERE 272 (341)
Q Consensus 260 ~~~~k~~~lee~~ 272 (341)
.++.+++++|++.
T Consensus 62 r~~~ri~elEeEl 74 (77)
T 2w83_C 62 KLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.04 E-value=14 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 247 VADVNSKLIKNQEIMRKKFK 266 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~ 266 (341)
+..-|..|...+..|+.++.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544443
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.02 E-value=14 Score=37.91 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 180 KVEAIVDEYNRLLATQLETQRQYYESL 206 (341)
Q Consensus 180 Kie~i~~EY~~LLtSQLEsQR~yyE~~ 206 (341)
.|..+.++.+.=|+.-++.=|..||+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 356667777777777777777777766
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.97 E-value=27 Score=31.70 Aligned_cols=34 Identities=12% Similarity=-0.074 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 258 QEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 258 q~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
....+..+..+..+........++++..|..+..
T Consensus 134 l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 134 MLELEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555554443
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.50 E-value=37 Score=33.73 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=7.2
Q ss_pred HHhHhHHHHHHhHh
Q 019425 281 ATILDLEEQIRDLT 294 (341)
Q Consensus 281 ~~i~dL~EQlrDLm 294 (341)
++++++..++..|+
T Consensus 565 ~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 565 QETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 26
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=81.37 E-value=16 Score=28.36 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q 019425 248 ADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 248 ~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
.+....|.++.+.....++.++++. ...+.++.+|+.+++.+
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~----~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQE----ERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666543 34446667777776654
No 27
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.27 E-value=18 Score=28.49 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 249 DVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
++...|.++.+.....++.++++. .....++.+|+.+++.++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~----~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQE----KKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455556666666666665555542 334455666666666554
No 28
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=81.23 E-value=5.8 Score=34.42 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 019425 184 IVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA-----VADVNSKLIKNQ 258 (341)
Q Consensus 184 i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~-----~~~ln~~L~~nq 258 (341)
++.||+.+|+.-|++=..|.+.. ..+.. -+...+...+....+.|+.+|.+..+|.+. +.++-..|..+.
T Consensus 56 l~qel~~~l~~~ld~l~~~~~~l----~~~L~-P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~ 130 (165)
T 1gs9_A 56 VTQELRALMDETMKELKAYKSEL----EEQLT-PVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQST 130 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TTSCC-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666665555553333 22111 122233334555666667666655544321 223444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 259 EIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+.++.++.-.-+++++. ....+++|+.+|.
T Consensus 131 EelR~kl~P~~eeL~~~---~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 131 EELRVRLASHLRKLRKR---LLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhhHHHHHHHhh
Confidence 55666655444443322 2345666666664
No 29
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.08 E-value=21 Score=30.45 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc--ccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAKSKRES--LIPETVEK---AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~~~~~--~i~~~~ek---~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
.||++-.-++++|..+..+... .+++..++ .+..|+..++..|+++..-......-...|.......-+.++.++
T Consensus 42 ~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 42 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3677777777777777654321 12222222 234455555555555544333333333344444444444444444
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 270 EREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 270 e~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
...... .++-...+++|++|.
T Consensus 122 ~~eeka----s~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 122 DKVEEL----LSKNYHLENEVARLK 142 (147)
T ss_dssp HTTTTH----HHHHHHHHHHHTTSC
T ss_pred HhHHHH----HHHHHHHHHHHHHHH
Confidence 321111 123345566666654
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.32 E-value=14 Score=29.11 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
.|+.|.++|..-.....+|++-|+.|......|+.+- ........+.+|.+|+.||.++.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~------~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG------KSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777778888876555554331 01111233556677777666653
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.13 E-value=35 Score=33.07 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=10.9
Q ss_pred HHhHhHHHHHHhHhHhhhh
Q 019425 281 ATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~lea 299 (341)
++|++|+-||.-|-.-|+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666555543
No 32
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=79.04 E-value=12 Score=33.00 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 182 EAIVDEYNRLLATQLETQRQYYESLLA 208 (341)
Q Consensus 182 e~i~~EY~~LLtSQLEsQR~yyE~~l~ 208 (341)
..|..|++.+++.-++.-+.|.+..-.
T Consensus 54 s~l~~el~~l~~e~~~~l~~~~~~l~~ 80 (191)
T 1nfn_A 54 SQVTQELRALMDETMKELKAYKSELEE 80 (191)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999888888888665533
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.19 E-value=21 Score=34.85 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=8.9
Q ss_pred HHHHHHhHhHHHHHHhHh
Q 019425 277 RLRDATILDLEEQIRDLT 294 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLm 294 (341)
.+.+.+|.+-.+.+.|+.
T Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 459 GEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhcccHHHHHH
Confidence 334445555555555553
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.14 E-value=6.5 Score=33.36 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLI---KNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~---~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
+....++...|+.|..-+ ..+-|+-.. ..+.....++..++ .+++.++..+..|++||.||---+
T Consensus 66 E~~~~~ie~ElE~LTasL--FeEAN~MVa~ar~~~~~~e~r~~~L~----~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 66 EEEADKLNKEVEDLTASL--FDEANNLVADARMEKYAIEILNKRLT----EQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHTTHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHHHHHHHH----HTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555565554332 223333221 22333444444444 345667778899999999985433
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.57 E-value=18 Score=40.02 Aligned_cols=7 Identities=29% Similarity=0.543 Sum_probs=3.3
Q ss_pred CCCCeeE
Q 019425 35 NPNPKFS 41 (341)
Q Consensus 35 sgnp~v~ 41 (341)
..||.+.
T Consensus 563 ~~~~~~~ 569 (1184)
T 1i84_S 563 GNHAKFQ 569 (1184)
T ss_dssp SSCTTEE
T ss_pred CCCCCcc
Confidence 3455444
No 36
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.61 E-value=58 Score=28.05 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEE 270 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee 270 (341)
+...+..++.++..+..+.+.-...++.|.+....++-++..+|+
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666555444344444555544444444444443
No 37
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.22 E-value=77 Score=31.99 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHhHhHHHHHHhHhHhh
Q 019425 275 SLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..+++..++++++.+++.-|
T Consensus 131 ~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 131 QLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566777788887777644
No 38
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=65.04 E-value=90 Score=32.10 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=8.5
Q ss_pred HHhHhHHHHHHhHh
Q 019425 281 ATILDLEEQIRDLT 294 (341)
Q Consensus 281 ~~i~dL~EQlrDLm 294 (341)
.++..|+.||.||-
T Consensus 567 ~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 567 KESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666653
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=64.62 E-value=3.6 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=26.4
Q ss_pred cccccccCccccccCCCCeeEee-eeeEEeccCCCCC-----CCCCCCCCcc
Q 019425 21 GFCTVSSTATRSRANPNPKFSER-RGLVHLFRGTSQS-----YQQNPNSRST 66 (341)
Q Consensus 21 ~~~~~~~~~~~~~~sgnp~v~~t-~Gi~Hlf~~~~~~-----s~~~pv~r~~ 66 (341)
.-|+|+. -+|..|...+... .| |+|+..+.. +..+|++|..
T Consensus 6 ~~C~IC~---~~~~~~~~~~~~~~C~--H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCL---AELEDGEEARFLPRCG--HGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTC---CCCCTTSCCEECSSSC--CEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CcCccCC---ccccCCCceEECCCCC--CcccHHHHHHHHHcCCcCcCCCCE
Confidence 4688884 3466666555554 55 999998753 3456776653
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.43 E-value=68 Score=39.67 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=14.0
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 019425 187 EYNRLLA---TQLETQRQYYESLLAEAK 211 (341)
Q Consensus 187 EY~~LLt---SQLEsQR~yyE~~l~~~~ 211 (341)
-|..||. .+|+.|+..|+.=|.++.
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~ 1930 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLR 1930 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 356677777775555444
No 41
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.08 E-value=59 Score=25.98 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHHhHhHHHHHHhH
Q 019425 280 DATILDLEEQIRDL 293 (341)
Q Consensus 280 ~~~i~dL~EQlrDL 293 (341)
+.++..|++||.|-
T Consensus 82 e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 82 EILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 35677888888874
No 42
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=61.31 E-value=53 Score=29.49 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAV-ADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~-~~ln~~L~~nq~~~~~k~~~le 269 (341)
+.....+|..+++++..++... .+|-.++..-+-.=+.||++++
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445556667777766655433 2344443332223333444433
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.04 E-value=32 Score=25.78 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 019425 197 ETQRQYYESL 206 (341)
Q Consensus 197 EsQR~yyE~~ 206 (341)
.+||.|=|-+
T Consensus 18 ~AQRafReRK 27 (70)
T 1gd2_E 18 AAQRAFRKRK 27 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666665543
No 44
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.65 E-value=40 Score=25.99 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 194 TQLETQRQYYESLLAEAK 211 (341)
Q Consensus 194 SQLEsQR~yyE~~l~~~~ 211 (341)
++|++|+..-..+|..++
T Consensus 2 ~~l~~e~e~~~~klq~~E 19 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLE 19 (79)
T ss_dssp --------CTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 456666655555555444
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.18 E-value=1.3e+02 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019425 252 SKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 252 ~~L~~nq~~~~~k~~~lee~~ 272 (341)
+.|+.+.+..+.+|+.||...
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888755
No 46
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=59.91 E-value=43 Score=25.54 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 254 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 254 L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
|..+.+.++.++..|-.+.........++|..|+.+++.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555444444443333344667777777766
No 47
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.53 E-value=16 Score=35.86 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 266 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~ 266 (341)
++..|+.+++.+++++..+++-.+.+....+.+.+++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444444444444444443
No 48
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=58.40 E-value=6.8 Score=31.27 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
.|=+|+.|.|||-.+.+-.. ... . ....+....--||.++.+|..++..++.-|+.|..-|+.-
T Consensus 13 ~sVie~ErIY~e~v~~~~~~-tg~--~--~~~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtq 76 (95)
T 3n7n_E 13 KAKLDSERIYNEYVQSQYEF-ASL--D--KPKKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQ 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-C-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcCCC-ccc--c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999988733220 000 0 0111223333466666666666666666666665554443
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.23 E-value=61 Score=24.91 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=4.1
Q ss_pred HHHHHhHhHH
Q 019425 278 LRDATILDLE 287 (341)
Q Consensus 278 ~k~~~i~dL~ 287 (341)
..|-+|-||.
T Consensus 56 ~Ld~KI~eL~ 65 (79)
T 3cvf_A 56 LLDVSLFELS 65 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 3344444443
No 50
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=57.87 E-value=44 Score=23.18 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 019425 256 KNQEIMRKKFKEIEEREITSLRLRDATILDLEEQ 289 (341)
Q Consensus 256 ~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQ 289 (341)
.+.+.++.++..|-.+.........+.|..|+.+
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444333333333333555565554
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.44 E-value=78 Score=25.87 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhHHHHHHhHhHhh
Q 019425 247 VADVNSKLIKNQEIMRKKFKEIEEREITSL---RLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~~lee~~~~~~---~~k~~~i~dL~EQlrDLmf~l 297 (341)
..++...|.+....+..++++++++..... .........|+.++.||---|
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554443221 122234445555555554433
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.20 E-value=76 Score=25.35 Aligned_cols=48 Identities=4% Similarity=0.041 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEE 242 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~ 242 (341)
.+||++|..-++..+.++..+...+.. ....+.....+++..|+.|..
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~--~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENE--LRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888899888888765433111 112334455566666665554
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=55.86 E-value=53 Score=33.15 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHhHHHHHHhHhHhh
Q 019425 274 TSLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 274 ~~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
+.++..+++..++++++.+++.-|
T Consensus 118 ~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 118 DQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555566677777777776644
No 54
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.60 E-value=4.1 Score=28.97 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=29.1
Q ss_pred cccccccCccccccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCcccc
Q 019425 21 GFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRSTCI 68 (341)
Q Consensus 21 ~~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~~l 68 (341)
.-|+|+. -.|..+.+.+....| |+|+..|.. ...+|+||....
T Consensus 15 ~~C~IC~---~~~~~~~~~~~~~C~--H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICL---SILEEGEDVRRLPCM--HLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTT---BCCCSSSCEEECTTS--CEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCC---ccccCCCcEEEeCCC--CHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 4799994 346677766666566 999987753 346888876443
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.57 E-value=1.1e+02 Score=27.09 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=1.7
Q ss_pred HHhHhHHHHHHhHhHhhhhHH
Q 019425 281 ATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ 301 (341)
.++..|++.+|||--=|...+
T Consensus 161 ~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 161 VSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp CCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777765554433
No 56
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.33 E-value=79 Score=25.33 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLI 255 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~ 255 (341)
..+..|..+++.|+.|...|++-.+.|.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655554444443
No 57
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=55.00 E-value=99 Score=26.32 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q 019425 224 KAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 224 k~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLm 294 (341)
+.+...+..|..-...|..|.+.-..|.+.|..-....+..+.+.+.+..+ .+.+-.+|..++.+|+..|
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~lee-yK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEE-YKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 344455555555555566665555555566655555555555554444432 3445566666666666544
No 58
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=54.62 E-value=25 Score=29.39 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=6.9
Q ss_pred HHHHHhHhHHHHHHh
Q 019425 278 LRDATILDLEEQIRD 292 (341)
Q Consensus 278 ~k~~~i~dL~EQlrD 292 (341)
..+.+|.+|+.+|.+
T Consensus 72 eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 72 ELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555544443
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.51 E-value=1.2e+02 Score=31.04 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHhHHHHHH
Q 019425 274 TSLRLRDATILDLEEQIR 291 (341)
Q Consensus 274 ~~~~~k~~~i~dL~EQlr 291 (341)
...+....+|.+|+.+.+
T Consensus 567 ~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344455666777776643
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.34 E-value=67 Score=24.18 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELD 238 (341)
Q Consensus 227 ~~k~~~l~~kl~ 238 (341)
.+|++.|+...+
T Consensus 5 kkKm~~lk~e~d 16 (81)
T 1ic2_A 5 KKKMQMLKLDKE 16 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 61
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.26 E-value=1e+02 Score=30.34 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 265 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~~~~--i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~ 265 (341)
..-|+.|-.=|+..|++++...+.- ....+..-+..-.+.|..++.....--....+++..|++.+..++.+|
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777654321 011111111112222233333222222334566677777766666655
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.09 E-value=88 Score=25.48 Aligned_cols=6 Identities=17% Similarity=0.517 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019425 249 DVNSKL 254 (341)
Q Consensus 249 ~ln~~L 254 (341)
..|+.|
T Consensus 49 ~~~~~l 54 (111)
T 2v66_B 49 AIKEQL 54 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 63
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=53.37 E-value=4.6 Score=30.76 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=28.1
Q ss_pred cccccccCccccccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCcc
Q 019425 21 GFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRST 66 (341)
Q Consensus 21 ~~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~ 66 (341)
.-|+||. -.|..|++.+.+..| |+|+..|.. ...||+||..
T Consensus 41 ~~C~IC~---~~~~~~~~~~~l~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 41 MCCPICC---SEYVKGDVATELPCH--HYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SEETTTT---EECCTTCEEEEETTT--EEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcccC---hhhcCCCcEEecCCC--ChHHHHHHHHHHHcCCcCcCcCcc
Confidence 4799994 346677766666666 999988753 3467777753
No 64
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=52.97 E-value=56 Score=25.17 Aligned_cols=66 Identities=11% Similarity=0.224 Sum_probs=38.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHH--HHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPE--TVEK----------AVASKMQDIQNELDICEEAKK 245 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~--~~ek----------~~~~k~~~l~~kl~kl~~E~~ 245 (341)
+.+|+.+..+ .++|+.|+......+...+.+++.++.. .++. .+.-.-.+|+.+++.|.+|+.
T Consensus 6 r~qi~~l~~e-----~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 6 RRQVDQLTND-----KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555 4566777777888888877777654432 1111 112222456667777777766
Q ss_pred HHH
Q 019425 246 AVA 248 (341)
Q Consensus 246 ~~~ 248 (341)
|++
T Consensus 81 fLk 83 (86)
T 3swk_A 81 FLK 83 (86)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 65
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.52 E-value=36 Score=34.38 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=15.1
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
++..+++..++++++.+++.-|
T Consensus 87 i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 87 KKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566777888888777654
No 66
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=52.32 E-value=2e+02 Score=35.70 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019425 196 LETQRQYYESLLAE 209 (341)
Q Consensus 196 LEsQR~yyE~~l~~ 209 (341)
|...|.-.+.+..+
T Consensus 1908 l~~K~~el~~~~~r 1921 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLH 1921 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 67
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.15 E-value=8.7 Score=27.57 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=30.0
Q ss_pred ccccccccCccccccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCcccceec
Q 019425 20 AGFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRSTCIFVV 71 (341)
Q Consensus 20 ~~~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~~lcil 71 (341)
...|+||. -.|..+...+....| |+|+..|.. ...+|+||....-+.
T Consensus 15 ~~~C~IC~---~~~~~~~~~~~~~C~--H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 15 HELCAVCL---EDFKPRDELGICPCK--HAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp SCBCSSSC---CBCCSSSCEEEETTT--EEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCcCCC---cccCCCCcEEEcCCC--CEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 35899994 345556554444444 999987753 347898887655443
No 68
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.80 E-value=57 Score=32.38 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=15.6
Q ss_pred HHHHHHHHhHhHHHHHHhHhHhh
Q 019425 275 SLRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 275 ~~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.++..+++..++++++.+++.-|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455567778888888877654
No 69
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.33 E-value=84 Score=24.12 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 235 NELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 235 ~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
.++.....|+..++....-|.+-+..+..-+.+++
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~ 52 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 70
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.96 E-value=1.2e+02 Score=30.38 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 019425 223 EKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQI 290 (341)
Q Consensus 223 ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQl 290 (341)
++.+...+++|+..|+.+..-.....++-+.|....+..+.++...+...++.....++...-+++.+
T Consensus 95 q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
No 71
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.68 E-value=23 Score=25.48 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=28.5
Q ss_pred cccccccCccccccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCccc
Q 019425 21 GFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRSTC 67 (341)
Q Consensus 21 ~~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~~ 67 (341)
..|+||. -.|..+.+.+....| |+|+..|.. ...+|+||...
T Consensus 16 ~~C~IC~---~~~~~~~~~~~~~C~--H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 16 LECPVCK---EDYALGESVRQLPCN--HLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CCCTTTT---SCCCTTSCEEECTTS--CEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCeeCC---ccccCCCCEEEeCCC--CeecHHHHHHHHHcCCcCcCcCCcc
Confidence 4799994 245555555555556 999999863 35788888654
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.58 E-value=1.1e+02 Score=25.16 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 192 LATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
|...++..|..+|....+...-. ..+...+..|+..|+.-...+..+..-|+-|+...+.+
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v---------~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVV---------LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888887766554321 12445566666666655555555455555565554443
No 73
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=48.84 E-value=73 Score=24.39 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKK 264 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~nq~~~~~k 264 (341)
.|.+|+...|..|.+++...+ ..+++++..+..++.++..++ ++..-++..|+-+..|
T Consensus 7 ~L~~q~~~Le~~l~e~E~~~~------------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK 65 (86)
T 1x8y_A 7 QLQCQLAAKEAKLRDLEDSLA------------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIK 65 (86)
T ss_dssp -----CTTHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777877777766432 233444555555555544432 3444444444444333
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.33 E-value=74 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHhHhHHHHHHh
Q 019425 276 LRLRDATILDLEEQIRD 292 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrD 292 (341)
+.+++++|.+|+.++.-
T Consensus 49 L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 49 LDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777777643
No 75
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.75 E-value=1.1e+02 Score=26.65 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=18.8
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhhhHHHHhc
Q 019425 276 LRLRDATILDLEEQIRDLTVYIEAQKTLTN 305 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~leaq~ki~~ 305 (341)
++..-++|.+|+.|+++..+- .+.++.+
T Consensus 115 I~aL~~Ei~~Lr~qL~~~R~k--~~~em~K 142 (175)
T 3lay_A 115 INAVAKEMESLGQKLDEQRVK--RDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445557788899999887654 3445554
No 76
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.72 E-value=24 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHhHHHHHHhHh
Q 019425 274 TSLRLRDATILDLEEQIRDLT 294 (341)
Q Consensus 274 ~~~~~k~~~i~dL~EQlrDLm 294 (341)
..+..||++|..|++...+|+
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 345567778888887777664
No 77
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=47.54 E-value=1.3e+02 Score=25.68 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=4.2
Q ss_pred cEEEEec
Q 019425 124 QQIWDYV 130 (341)
Q Consensus 124 ~rVWdY~ 130 (341)
..+|||.
T Consensus 14 ~~~w~Y~ 20 (185)
T 3r2p_A 14 DLATVYV 20 (185)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4567765
No 78
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=47.32 E-value=1.3e+02 Score=25.61 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=25.4
Q ss_pred HHHhHhHHHHHHhHhHhhhhHHHHhccCCCCCcCCcEEe
Q 019425 280 DATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVL 318 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~leaq~ki~~~~~~~ei~~Gti~ 318 (341)
++++.++.|+.+-|.|-++.-.++ +-++||..|+|-
T Consensus 83 ~~ek~~r~e~k~~l~~ql~qv~~L---~lGsEv~qg~vE 118 (150)
T 4dci_A 83 AGKRSELEEQKRNLLQQQAQVREL---EMDQIVEQGQLE 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---CTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcCEEeeceee
Confidence 355667777888787777655555 456789999884
No 79
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.15 E-value=90 Score=23.57 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=4.3
Q ss_pred HHHHHhHhHH
Q 019425 278 LRDATILDLE 287 (341)
Q Consensus 278 ~k~~~i~dL~ 287 (341)
..|-+|.||.
T Consensus 50 ~Ld~KI~eL~ 59 (72)
T 3cve_A 50 ILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 3444444443
No 80
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=46.97 E-value=78 Score=28.53 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 249 DVNSKLIKNQEIMRKKFK 266 (341)
Q Consensus 249 ~ln~~L~~nq~~~~~k~~ 266 (341)
+|-..|..|.+.++.++.
T Consensus 147 elr~kl~~~veelk~~l~ 164 (243)
T 2a01_A 147 EMRDRARAHVDALRTHLA 164 (243)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666655554
No 81
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.90 E-value=1.1e+02 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 250 VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 250 ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
+-+.+..-+...+.+.++++... ........++..|++||+
T Consensus 42 ~eE~~aql~Re~~eK~re~e~~K-r~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 42 LEEQLAESRRQYEEKNKEFEREK-HAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444322 122222344455555553
No 82
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.86 E-value=90 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIK 256 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~ 256 (341)
..+|...++.+.+|...++++|+.|+.
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665544
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.75 E-value=2.1e+02 Score=27.64 Aligned_cols=8 Identities=0% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 019425 200 RQYYESLL 207 (341)
Q Consensus 200 R~yyE~~l 207 (341)
+.-+|..+
T Consensus 369 ~~~le~~~ 376 (487)
T 3oja_A 369 KKALDEQV 376 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 84
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.35 E-value=1e+02 Score=23.88 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=8.2
Q ss_pred HHhHhHHHHHHhH
Q 019425 281 ATILDLEEQIRDL 293 (341)
Q Consensus 281 ~~i~dL~EQlrDL 293 (341)
.+|.-|++++++|
T Consensus 59 ~e~~~l~~~~eel 71 (81)
T 1wt6_A 59 AHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566667777663
No 85
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.18 E-value=95 Score=23.29 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 019425 261 MRKKFKEIE 269 (341)
Q Consensus 261 ~~~k~~~le 269 (341)
++.++..+|
T Consensus 46 L~kKiq~lE 54 (81)
T 1ic2_A 46 LQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 86
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=44.64 E-value=62 Score=22.76 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEEAKKAVADVNSKLIKN 257 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~n 257 (341)
++...++|+..+++|+.++...++-++.+.+.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566788888888887776655556555553
No 87
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=44.49 E-value=50 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHhHhHHHHHHhH
Q 019425 277 RLRDATILDLEEQIRDL 293 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDL 293 (341)
+..+-+|.||..+|.||
T Consensus 73 ~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 73 KRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HhhhhHHHHHHHHHHHh
Confidence 34456899999999998
No 88
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.09 E-value=1e+02 Score=23.35 Aligned_cols=16 Identities=0% Similarity=0.048 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019425 258 QEIMRKKFKEIEEREI 273 (341)
Q Consensus 258 q~~~~~k~~~lee~~~ 273 (341)
...++.++..+|....
T Consensus 28 ~~~~q~~i~~lE~eL~ 43 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 89
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=44.06 E-value=1e+02 Score=23.24 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRD 292 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrD 292 (341)
.+|..+|+.-.+|...+.-|-..|+.....+-.-.+++|.+.. --+..|.+|+.-+.|
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~----~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNL----NLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHhhccc
Confidence 3445555544455544444444455444444333333333321 222345555554443
No 90
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=43.40 E-value=1.8e+02 Score=26.03 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=39.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhh------cccHHHHHHHHHHHHHHHHHHHHHH
Q 019425 177 FNSKVEAIVDEYNRLLATQLETQRQ----YYESLLAEAKSKRE------SLIPETVEKAVASKMQDIQNELDIC 240 (341)
Q Consensus 177 ~~~Kie~i~~EY~~LLtSQLEsQR~----yyE~~l~~~~~~~~------~~i~~~~ek~~~~k~~~l~~kl~kl 240 (341)
++.|+.-|..||...+...+|.=|. |.+++..++....+ ..+.+.+...+...+..++.+|.-.
T Consensus 93 ~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~ 166 (243)
T 2a01_A 93 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPY 166 (243)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999988888774 44444333333221 1134455555666666666666543
No 91
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.89 E-value=56 Score=26.41 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHhHhHHHHHHhH
Q 019425 277 RLRDATILDLEEQIRDL 293 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDL 293 (341)
+..+-+|.||..+|.||
T Consensus 73 ~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 73 KQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 34567899999999999
No 92
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=42.72 E-value=1.1e+02 Score=23.74 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=14.1
Q ss_pred hHhHHHHHHhHhHhhhh
Q 019425 283 ILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 283 i~dL~EQlrDLmf~lea 299 (341)
..++++.+-|++||+-.
T Consensus 60 ~~~i~eELgDvLf~lv~ 76 (95)
T 1vmg_A 60 LDSIQEELADVIAWTVS 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999999854
No 93
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.61 E-value=1.3e+02 Score=24.28 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=12.3
Q ss_pred HHHHHhHhHHHHHHhHhH
Q 019425 278 LRDATILDLEEQIRDLTV 295 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf 295 (341)
..+.+|.+|+-||.|...
T Consensus 86 alq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 86 TLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344667788888887653
No 94
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.52 E-value=1.5e+02 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=14.8
Q ss_pred HHHHhHhHHHHHHhHhHhhh
Q 019425 279 RDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~le 298 (341)
-..+|.+|+++|+.+.-.|.
T Consensus 99 aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 99 SEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999998765553
No 95
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.10 E-value=7.8 Score=28.06 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=27.8
Q ss_pred cccccccCccccccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCcc
Q 019425 21 GFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRST 66 (341)
Q Consensus 21 ~~~~~~~~~~~~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~ 66 (341)
.-|+||. -.|..+++.+....| |+|+..|.. ...+|+||..
T Consensus 24 ~~C~IC~---~~~~~~~~~~~l~C~--H~fh~~Ci~~w~~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 24 TLCVVCM---CDFESRQLLRVLPCN--HEFHAKCVDKWLKANRTCPICRAD 69 (75)
T ss_dssp CEETTTT---EECCBTCEEEEETTT--EEEETTHHHHHHHHCSSCTTTCCC
T ss_pred CCCeECC---cccCCCCeEEEECCC--CHhHHHHHHHHHHcCCcCcCcCCc
Confidence 4799994 346666655555555 999998863 3468887753
No 96
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=41.63 E-value=74 Score=30.07 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 184 IVDEYNRLLATQLETQRQYYES 205 (341)
Q Consensus 184 i~~EY~~LLtSQLEsQR~yyE~ 205 (341)
+.-|++.|++.-++.=-.|++.
T Consensus 64 l~kel~~l~~~~~~el~~y~~~ 85 (307)
T 2l7b_A 64 VTQELRALMDETMKELKAYKSE 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444344433
No 97
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=41.15 E-value=1.4e+02 Score=25.59 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhH-HHH-hccCCCCCcCCcEE
Q 019425 254 LIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQ-KTL-TNMTDSDGIKGGTV 317 (341)
Q Consensus 254 L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq-~ki-~~~~~~~ei~~Gti 317 (341)
+..........+..+.++....++.....|..|+..|.. |.++. ..+ .+. -+-++-.|+|
T Consensus 32 ~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~---y~e~~r~elf~k~-Kt~~l~~G~v 93 (171)
T 2p2u_A 32 VGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVAT---FATLNKTEMFKDR-KSLDLGFGTI 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHCC----CCBCSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhcCCC-eEEEeCCEEE
Confidence 333333344455555666666666666777777776654 33333 333 211 1234666776
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.15 E-value=1.6e+02 Score=24.60 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 019425 202 YYESLLAEAK 211 (341)
Q Consensus 202 yyE~~l~~~~ 211 (341)
|...+|.++.
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 99
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.09 E-value=1.2e+02 Score=27.40 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIM 261 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~ 261 (341)
...+|...++.+.+|...+++.|+.|..-.+..
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778888888888887776654444
No 100
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=40.91 E-value=1.4e+02 Score=25.50 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKK-----AVADVNSKLIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~-----~~~~ln~~L~~nq~~~~~k~~~lee~~ 272 (341)
......|+.+|.+-.++.+ .+.++...+..|.+.++.++.=+-+++
T Consensus 77 ~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el 127 (185)
T 3r2p_A 77 EKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 127 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334445555443333322 234666667777777777765444443
No 101
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.37 E-value=1.5e+02 Score=24.17 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEI-------MRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKT 302 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~-------~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~k 302 (341)
..+|+..|.++..+++++. ..+...-+. +..++...|..+....+.-.+-..+.++|+.-|++ .++.
T Consensus 15 ~~ql~~qL~k~~~~r~~Le---~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~---~Re~ 88 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQELE---DFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ---SREQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3455666666666665443 223332222 33333333333333333333445677778888887 4444
Q ss_pred Hh
Q 019425 303 LT 304 (341)
Q Consensus 303 i~ 304 (341)
+.
T Consensus 89 V~ 90 (112)
T 1x79_B 89 VS 90 (112)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 102
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.34 E-value=72 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 245 KAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 245 ~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
-.++++|-.|.. ++..||. ++.+++++|..|..-++|--.
T Consensus 14 ~kLKq~n~~L~~-------kv~~Le~----~c~e~eQEieRL~~LLkqHgl 53 (58)
T 3a2a_A 14 LRLKQMNVQLAA-------KIQHLEF----SCSEKEQEIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 345677776655 3444433 356677888888877776433
No 103
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.03 E-value=1.1e+02 Score=22.45 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019425 181 VEAIVDEYNRLLATQLETQRQYYESLLAEAKS 212 (341)
Q Consensus 181 ie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~ 212 (341)
+..|..+|..+...-.+.=-.||..+++++..
T Consensus 11 l~eiRaQYE~ia~knr~EaE~~y~~k~eel~~ 42 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEEWYKSKFADLSE 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555566666555444444566666655543
No 104
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=39.44 E-value=55 Score=27.16 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKA 246 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~ 246 (341)
...++.|.++||+|...+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaa 28 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQAD 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888765544
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.10 E-value=1.1e+02 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=11.4
Q ss_pred HHHHHHHhHhHHHHHHhHhH
Q 019425 276 LRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf 295 (341)
++..+.++.+.++.|+.|--
T Consensus 42 I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665543
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.77 E-value=1.3e+02 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~l 268 (341)
|+-+++.|+++...+.+-|..++.+.+.+...+..+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444443333333444444444444444333
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.53 E-value=1.6e+02 Score=23.98 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 252 SKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 252 ~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
.-|..-.+.++..+..- | ........++.+|++||+-|.-
T Consensus 65 ~vLkaQv~IY~~DF~aE--R--adREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 65 PVLKAQADIYKADFQAE--R--HAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc--h--hhHHHHHhHHHHHHHHHHHHHH
Confidence 34555555555554321 1 1112233567888888886643
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.30 E-value=1.6e+02 Score=28.82 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=14.5
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
++..+++..++++++.+++.-|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i 101 (421)
T 1ses_A 80 AKRLEEALREKEARLEALLLQV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566777777777776644
No 109
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.95 E-value=1.6e+02 Score=23.76 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 019425 203 YESLLAEAKS 212 (341)
Q Consensus 203 yE~~l~~~~~ 212 (341)
||.-|..++.
T Consensus 18 ye~~I~~LR~ 27 (119)
T 3ol1_A 18 YEEEMRELRR 27 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 110
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.48 E-value=51 Score=25.31 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 257 NQEIMRKKFKEIEEREI 273 (341)
Q Consensus 257 nq~~~~~k~~~lee~~~ 273 (341)
..+.++..+..+|.+..
T Consensus 29 ~l~~~q~~i~~lE~el~ 45 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMA 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554433
No 111
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=37.37 E-value=2.8e+02 Score=26.36 Aligned_cols=92 Identities=10% Similarity=0.161 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 199 QRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRL 278 (341)
Q Consensus 199 QR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~ 278 (341)
.-.||..+...+..+....+.+.+. .+....++.+.+.+++..++.. ....|......+......+.. .+..
T Consensus 102 f~syy~~L~~~~d~~d~~~l~~~L~-~L~~~i~~~q~~~~~~~~~L~~---F~~~l~~d~~~f~~~~~~l~~----~L~~ 173 (346)
T 2nrj_A 102 FDNYYETMVEAINTGDGETLKEGIT-DLRGEIQQNQKYAQQLIEELTK---LRDSIGHDVRAFGSNKELLQS----ILKN 173 (346)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHhhHHhHHHHHHH----HHhc
Confidence 4568887765554332111111111 2233444445555555444432 334454444455444444333 3344
Q ss_pred HHHHhHhHHHHHHhHhHhhh
Q 019425 279 RDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 279 k~~~i~dL~EQlrDLmf~le 298 (341)
....|.+|+.+|.++---+.
T Consensus 174 ~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 174 QGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp TTCCHHHHHHHHHHHTGGGC
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 44567777777766654443
No 112
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.32 E-value=1.4e+02 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAV 247 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~ 247 (341)
...|..+..++..|+..+
T Consensus 37 rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544433
No 113
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.44 E-value=1.9e+02 Score=24.55 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019425 249 DVNSKLIK 256 (341)
Q Consensus 249 ~ln~~L~~ 256 (341)
+-|+.|.+
T Consensus 86 eYn~rL~~ 93 (152)
T 4fla_A 86 EYNGRLAA 93 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 114
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.60 E-value=57 Score=28.59 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 019425 250 VNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 250 ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlr 291 (341)
|-..+..|.+.++.++.=.-++.+.. ..+.+++|++++.
T Consensus 122 L~~~l~~~~Eelr~~L~Py~eelr~k---l~~~~eeLr~~l~ 160 (191)
T 1nfn_A 122 VQAMLGQSTEELRVRLASHLRKLRKR---LLRDADDLQKRLA 160 (191)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHhH
Confidence 34444445555555554333332222 2233445555543
No 115
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=35.21 E-value=2e+02 Score=24.10 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLL 192 (341)
Q Consensus 178 ~~Kie~i~~EY~~LL 192 (341)
..|+.++..+|..+.
T Consensus 5 ~~~~~~l~~~~~~~~ 19 (284)
T 1c1g_A 5 KKKMQMLKLDKENAL 19 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 466777777776553
No 116
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.90 E-value=65 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 226 VASKMQDIQNELDICEE 242 (341)
Q Consensus 226 ~~~k~~~l~~kl~kl~~ 242 (341)
+++|+..|+.+|..+++
T Consensus 6 lekkcaalesklqalek 22 (31)
T 3ljm_A 6 LEKKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.44 E-value=1.5e+02 Score=22.42 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 019425 195 QLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKK 264 (341)
Q Consensus 195 QLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~nq~~~~~k 264 (341)
-|.+|+...|..|.+++...+. .+.+++.++..++.++..++ ++..-++..|+-+..|
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~------------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK 63 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAV------------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 63 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887765432 33444555555555444432 3444455555444433
No 118
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.30 E-value=84 Score=30.02 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=11.2
Q ss_pred HHHhHhHHHHHHhHhHhh
Q 019425 280 DATILDLEEQIRDLTVYI 297 (341)
Q Consensus 280 ~~~i~dL~EQlrDLmf~l 297 (341)
+.+|.+|+++|.+|+-.+
T Consensus 39 ~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 39 QQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666777776666544
No 119
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.87 E-value=68 Score=31.49 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=4.7
Q ss_pred HHhHhHHHHH
Q 019425 281 ATILDLEEQI 290 (341)
Q Consensus 281 ~~i~dL~EQl 290 (341)
-++.||++.|
T Consensus 52 n~~~~l~gnI 61 (412)
T 3u06_A 52 NTVMDLRDNI 61 (412)
T ss_dssp HHHHHHTCSE
T ss_pred HHHHHhCCCE
Confidence 3445555443
No 120
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=33.79 E-value=63 Score=25.63 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~le 269 (341)
|-.+|+.+++|+.+|+ +.+|+.|......+...+..+|
T Consensus 50 KWaKL~Rk~DKl~~el---e~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEI---NNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 5567788888887776 4577888777777766665554
No 121
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.10 E-value=24 Score=26.58 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=30.7
Q ss_pred cccccccccCccccccCCCCeeEeee---eeEEeccCCCCCC-------CCCCCCCcccc
Q 019425 19 EAGFCTVSSTATRSRANPNPKFSERR---GLVHLFRGTSQSY-------QQNPNSRSTCI 68 (341)
Q Consensus 19 ~~~~~~~~~~~~~~~~sgnp~v~~t~---Gi~Hlf~~~~~~s-------~~~pv~r~~~l 68 (341)
+++.|.||- -.|..|+|.| .-. |-+|.||..|+.. ..+|+||....
T Consensus 14 ~~~~C~IC~---~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICH---CEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSC---CCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcC---ccccCCCeeE-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 335899994 2466788864 222 3369999998632 46888887544
No 122
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=32.72 E-value=65 Score=24.68 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICE 241 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~ 241 (341)
..+++.||.+|+..+
T Consensus 18 k~kv~~LQ~eLdtsE 32 (79)
T 1tu3_F 18 KNKAQRLQTELDVSE 32 (79)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666665444
No 123
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=32.63 E-value=10 Score=26.74 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=29.8
Q ss_pred cccccccccccCccc-cccCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCccc
Q 019425 17 IEEAGFCTVSSTATR-SRANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRSTC 67 (341)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~~ 67 (341)
+.++..|+|+...-. |...|.+.+....| |.|+..|.. ...+|++|...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg--H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG--HVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS--CEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC--ChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 334457999963221 12345555666666 999988753 35788888643
No 124
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=32.59 E-value=97 Score=27.33 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=14.6
Q ss_pred HHHHHHhHhHHHHHHhHh
Q 019425 277 RLRDATILDLEEQIRDLT 294 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLm 294 (341)
+..+-+|.||..+|.||+
T Consensus 89 kkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 89 TKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HhcchhHHHHHHHHHHHH
Confidence 345568999999999996
No 125
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.18 E-value=51 Score=25.99 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 251 NSKLIKNQEIMRKKFKEIEEREITS 275 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~~lee~~~~~ 275 (341)
...+......++..+..+|......
T Consensus 32 E~~~~~e~~~~q~~i~~lE~eL~~~ 56 (95)
T 3mov_A 32 EDLLAKEKDNSRRMLTDKEREMAEI 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666655443
No 126
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.76 E-value=2.2e+02 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q 019425 187 EYNRLLATQL 196 (341)
Q Consensus 187 EY~~LLtSQL 196 (341)
.-++||..||
T Consensus 25 N~T~lLq~qL 34 (121)
T 3mq7_A 25 NVTHLLQQEL 34 (121)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4567777777
No 127
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.62 E-value=1.6e+02 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHhHhHHHHHHhHh--------HhhhhHHHHhccCCCCCcCCcEEeec
Q 019425 279 RDATILDLEEQIRDLT--------VYIEAQKTLTNMTDSDGIKGGTVLPV 320 (341)
Q Consensus 279 k~~~i~dL~EQlrDLm--------f~leaq~ki~~~~~~~ei~~Gti~~~ 320 (341)
.|+.|..+++++|.|. .|+ +.+-|... .-.++-||+++
T Consensus 25 LD~~i~~~~~~l~~lted~~n~~~aYV-T~~Di~~i---~~f~~qtviaI 70 (106)
T 2aze_B 25 LDHLMNICTTQLRLLSEDTDSQRLAYV-TCQDLRSI---ADPAEQMVMVI 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCEE-EHHHHHTT---SCTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhccccccccee-cHHHHhcC---cCCCcCeEEEE
Confidence 3445555555555554 233 34444432 23566677644
No 128
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=29.85 E-value=3.3e+02 Score=24.99 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019425 179 SKVEAIVDEYNRLLATQLET 198 (341)
Q Consensus 179 ~Kie~i~~EY~~LLtSQLEs 198 (341)
.|+.-+..+...-|...||.
T Consensus 29 ~~L~P~~~~l~~~l~~~le~ 48 (273)
T 3s84_A 29 ARLLPHANEVSQKIGDNLRE 48 (273)
T ss_dssp HHHGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 129
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.74 E-value=2.1e+02 Score=22.58 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLI 255 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~ 255 (341)
.+..|+.+|+..+++....+..+..|-....
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443433333
No 130
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.30 E-value=4.6e+02 Score=26.52 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 173 SGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRE--SLIPETVEKAVASKMQDIQNELDICEEAKKAVADV 250 (341)
Q Consensus 173 ~ea~~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~--~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~l 250 (341)
+++-++.|+.+++-|-..+=..--+.+.. ||..+++...+.+ ++--+++++.-.....+-+++|++-.+++.+-+.-
T Consensus 3 ~~a~yq~~la~yq~elarvqkana~aka~-Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 3 NEADYQAKLTAYQTELARVQKANADAKAA-YEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 251 NSKLIKNQEIMRKKFKEIEEREITSLRLRDA 281 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~~lee~~~~~~~~k~~ 281 (341)
-..-...+..|+....+..+.+++..+-|.+
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ek~k~e 112 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELEKHKNE 112 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
No 131
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.00 E-value=66 Score=24.43 Aligned_cols=17 Identities=29% Similarity=0.085 Sum_probs=9.3
Q ss_pred HHhHhHHHHHHhHhHhh
Q 019425 281 ATILDLEEQIRDLTVYI 297 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~l 297 (341)
.+|..|+.|++-|.--|
T Consensus 42 ~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 42 LTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666655433
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.98 E-value=1.6e+02 Score=28.13 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICE 241 (341)
Q Consensus 228 ~k~~~l~~kl~kl~ 241 (341)
+|.++|..++.+++
T Consensus 5 ~~~~~~~~~~~~~e 18 (323)
T 1lwu_C 5 KTVQKILEEVRILE 18 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554443
No 133
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=28.48 E-value=2.3e+02 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 229 KMQDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 229 k~~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
..-.|..++.++++|...++.+++..
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~ 63 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRL 63 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344455555555544444444333
No 134
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.97 E-value=3.6e+02 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHHHHHH
Q 019425 178 NSKVEAIVDEYNRLLAT 194 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtS 194 (341)
+.|+..|..|+-.-|..
T Consensus 72 r~kL~p~~~el~~~l~~ 88 (273)
T 3s84_A 72 RRQLTPYAQRMERVLRE 88 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555444333
No 135
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.91 E-value=2e+02 Score=21.94 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHhHHHHHH
Q 019425 242 EAKKAVADVNSKLIKNQEIMRKKFKEIEEREIT---SLRLRDATILDLEEQIR 291 (341)
Q Consensus 242 ~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~---~~~~k~~~i~dL~EQlr 291 (341)
.-+..+.-.-..|.+..+.+......+..+... .....+.+|.+|+++++
T Consensus 23 ~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 23 ETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555544443333333222 12233467788887765
No 136
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.77 E-value=84 Score=23.44 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=11.8
Q ss_pred HHHHHHHhHhHHHHHH
Q 019425 276 LRLRDATILDLEEQIR 291 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlr 291 (341)
+..++++|..|++|+.
T Consensus 34 L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567788888887764
No 137
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=27.71 E-value=2.2e+02 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=12.2
Q ss_pred HhHhHHHHHHhHhHhhhhHHHHhccCCCCCcCCcEEeecCCCCC
Q 019425 282 TILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQS 325 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~leaq~ki~~~~~~~ei~~Gti~~~~~~~~ 325 (341)
-|.||-++|+|.= .-++|.+.-.. -..++|++.+.+++
T Consensus 49 IIkDisdkId~Ce----Cnkei~e~L~~--~~k~~iip~~~e~~ 86 (129)
T 3f6n_A 49 IVNDLTKLINDCP----CNKEILEALGT--QPKEQLIEQPKEKG 86 (129)
T ss_dssp HHHHHHHHHHTCT----THHHHHHHHTC----------------
T ss_pred HHHHHHHHHhcCc----chHHHHHHHcc--CCcccccCCCCCCC
Confidence 3677777777653 33444432111 12466766554443
No 138
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.57 E-value=1e+02 Score=20.06 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019425 230 MQDIQNELDICEEAK 244 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~ 244 (341)
|.+|+.|.+.|..++
T Consensus 3 MnQLE~kVEeLl~~n 17 (34)
T 2oxj_A 3 MXQLEXKVXELLXKN 17 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 444555554444443
No 139
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.00 E-value=2.5e+02 Score=22.73 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccchhHHH
Q 019425 175 ALFNSKVEA 183 (341)
Q Consensus 175 a~~~~Kie~ 183 (341)
+++..|++.
T Consensus 13 ~~y~~K~ee 21 (131)
T 3tnu_A 13 EWFFTKTEE 21 (131)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344455444
No 140
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.80 E-value=12 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=14.7
Q ss_pred EEeccCCCC-----CCCCCCCCCcc
Q 019425 47 VHLFRGTSQ-----SYQQNPNSRST 66 (341)
Q Consensus 47 ~Hlf~~~~~-----~s~~~pv~r~~ 66 (341)
-|+||..|. ....+|++|..
T Consensus 49 ~H~FH~~Ci~~Wl~~~~~CP~CR~~ 73 (81)
T 2ecl_A 49 NHSFHNCCMSLWVKQNNRCPLCQQD 73 (81)
T ss_dssp SCEEEHHHHHHHTTTCCBCTTTCCB
T ss_pred CCccChHHHHHHHHhCCCCCCcCCC
Confidence 399998874 33578888864
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.76 E-value=93 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=8.9
Q ss_pred HHhHhHHHHHHhHhHhh
Q 019425 281 ATILDLEEQIRDLTVYI 297 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~l 297 (341)
.++.+++.+|-.+|--.
T Consensus 63 ~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 63 ADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 142
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.46 E-value=5.1e+02 Score=26.09 Aligned_cols=74 Identities=8% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 193 ATQLETQRQYYESLLAEAKSKRESL--IPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFK 266 (341)
Q Consensus 193 tSQLEsQR~yyE~~l~~~~~~~~~~--i~~~~ek~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~ 266 (341)
..-|..|.+=|-..|.+++.....- ....+..-+..-.+.|..++.....--....+++..|+..+..++.++.
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888887653210 0111111111222223333333333233345677777777777766653
No 143
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.41 E-value=2.6e+02 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=14.2
Q ss_pred HHHHHHhHhHHHHHHhHhH
Q 019425 277 RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf 295 (341)
...+.+|.+|+-||.|...
T Consensus 72 s~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 72 VSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445678888999888766
No 144
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.31 E-value=2.2e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 232 DIQNELDICEEAKKAVADVNSKLIKNQEIMRKKF 265 (341)
Q Consensus 232 ~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~ 265 (341)
.|+.+++.+..++..+..--.+++...+.++.|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~Ky 37 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444443322233444444444444
No 145
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.28 E-value=1.9e+02 Score=21.06 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 019425 192 LATQLETQRQYYESLLAEAKSKR 214 (341)
Q Consensus 192 LtSQLEsQR~yyE~~l~~~~~~~ 214 (341)
|++-|..=|.-||....+-+.+.
T Consensus 7 L~~il~eiRaQYE~ia~knr~Ea 29 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEA 29 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 35667777888998887766543
No 146
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.11 E-value=2.8e+02 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=7.2
Q ss_pred HhHhHHHHHHhHhHhhh
Q 019425 282 TILDLEEQIRDLTVYIE 298 (341)
Q Consensus 282 ~i~dL~EQlrDLmf~le 298 (341)
+|.+|.++|+|...-++
T Consensus 79 EI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 147
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=25.78 E-value=2.1e+02 Score=22.12 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHhHHHHH
Q 019425 251 NSKLIKNQEIMRKKFKEIEERE---ITSLRLRDATILDLEEQI 290 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~~lee~~---~~~~~~k~~~i~dL~EQl 290 (341)
.++|......++-++.++|.+. ...++...++|.-|++|+
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
No 148
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=25.53 E-value=3.4e+02 Score=23.74 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 019425 178 NSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKA----------- 246 (341)
Q Consensus 178 ~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~~~~~~i~~~~ek~~~~k~~~l~~kl~kl~~E~~~----------- 246 (341)
..++--+..++-.-|+..++.-|.=...-|++++.+.+.-. ..+...+...+..++.+|.-...++..
T Consensus 60 ~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~-~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~ 138 (216)
T 2lem_A 60 QERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYL-DEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQG 138 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCC
T ss_pred HHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46677777777777777776666666666666666543211 223333445566666666544333321
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 019425 247 -----VADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEE 288 (341)
Q Consensus 247 -----~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~E 288 (341)
..+|-..|..|.+.++..+.-.-++.+..+ ++.+.+|++
T Consensus 139 ~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl---~~~leeL~~ 182 (216)
T 2lem_A 139 RLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESL---AQRLAELKS 182 (216)
T ss_dssp SCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH---HHHHHHHhC
Confidence 246667777777777776654444433322 344555555
No 149
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.30 E-value=5.4e+02 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhcc
Q 019425 251 NSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNM 306 (341)
Q Consensus 251 n~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~~ 306 (341)
-+.|+.|.+..+.+|+.||.-...+++....-...-=+=-=|+-.|-+-|+.|.+.
T Consensus 134 IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv 189 (491)
T 1m1j_A 134 IKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQA 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHh
Confidence 35678888888888888887766555543221000000112555666666666654
No 150
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.08 E-value=5e+02 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=10.1
Q ss_pred HHHHHhHhHHHHHHhHhHh
Q 019425 278 LRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~ 296 (341)
..+.+|.+|++.|..|+-.
T Consensus 116 ~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 116 SNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566666666555443
No 151
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.63 E-value=2.2e+02 Score=21.22 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhH
Q 019425 225 AVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf 295 (341)
++.+|++.|+...+.+.. --+.|.+..+..=.|++.+|.... ..+.+...|...|.+++.
T Consensus 6 aiKkkmqaLk~Ekdna~e-------~~e~lE~ERdFYf~KLRdiE~l~q----~~e~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALD-------RAEQAEADKDFYFGKLRNIELICQ----ENEGENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HTGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHh
Confidence 345556555554444433 334455555566666666654332 223345566777777665
No 152
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.53 E-value=3.7e+02 Score=23.81 Aligned_cols=11 Identities=36% Similarity=0.437 Sum_probs=4.5
Q ss_pred hHhHHHHHHhH
Q 019425 283 ILDLEEQIRDL 293 (341)
Q Consensus 283 i~dL~EQlrDL 293 (341)
+.||=|.+.-|
T Consensus 74 ~~DL~e~LTGl 84 (190)
T 4emc_A 74 IKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHccCc
Confidence 34444444333
No 153
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.50 E-value=2.4e+02 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAVADVNSKL 254 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L 254 (341)
.+|...++....|...+++-|+.|
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444445444
No 154
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.45 E-value=1.2e+02 Score=26.43 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=15.4
Q ss_pred HHhHhHHHHHHhHhHhhhhHH
Q 019425 281 ATILDLEEQIRDLTVYIEAQK 301 (341)
Q Consensus 281 ~~i~dL~EQlrDLmf~leaq~ 301 (341)
++|..|-+++.||---+..+.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888876665543
No 155
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.38 E-value=60 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=15.6
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
++..+++..++++++.+++.-|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i 105 (425)
T 2dq3_A 84 IDRLEEELRKVEEELKNTLLWI 105 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4455567778888888887755
No 156
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.38 E-value=3.7e+02 Score=26.98 Aligned_cols=22 Identities=14% Similarity=-0.102 Sum_probs=14.7
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+...++|.+|+++++++---|
T Consensus 125 ~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 125 GREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577888888887765433
No 157
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.08 E-value=2.3e+02 Score=21.30 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKA----VADVNSKLIKNQ 258 (341)
Q Consensus 233 l~~kl~kl~~E~~~----~~~ln~~L~~nq 258 (341)
|++++..|+....+ +.+||..+.+-|
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq 41 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADAR 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 346666665533
No 158
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=23.90 E-value=5e+02 Score=25.13 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=8.1
Q ss_pred HHHHHHHHH---HHHHHHHHHH
Q 019425 188 YNRLLATQL---ETQRQYYESL 206 (341)
Q Consensus 188 Y~~LLtSQL---EsQR~yyE~~ 206 (341)
|...|..|+ -++-.||+.+
T Consensus 3 ~D~fl~~q~r~~~s~~~~~~~~ 24 (463)
T 2d4y_A 3 YDAFITNQLRGAQNQSSGLTTR 24 (463)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
Confidence 334444444 3344455543
No 159
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=23.85 E-value=25 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=25.8
Q ss_pred cccccccCccccc-cCCCCeeEeeeeeEEeccCCCCC-----CCCCCCCCcc
Q 019425 21 GFCTVSSTATRSR-ANPNPKFSERRGLVHLFRGTSQS-----YQQNPNSRST 66 (341)
Q Consensus 21 ~~~~~~~~~~~~~-~sgnp~v~~t~Gi~Hlf~~~~~~-----s~~~pv~r~~ 66 (341)
.-|+|+. -+| .++++.+....| |+|+..+.. ...+|++|..
T Consensus 6 ~~C~IC~---~~~~~~~~~~~~~~Cg--H~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICL---EDIHTSRVVAHVLPCG--HLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CSCTTTC---CCCCTTTSCEEECTTS--CEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CcCcccC---hhhcCCCcCeEecCCC--CcccHHHHHHHHHcCCcCCCCCCc
Confidence 4688884 233 234555555556 999998753 2567877753
No 160
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=23.82 E-value=3.1e+02 Score=22.71 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHHHHHhH
Q 019425 247 VADVNSKLIKNQEIMRKKFKEIEE---REITSLRLRDATILDLEEQIRDL 293 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~~lee---~~~~~~~~k~~~i~dL~EQlrDL 293 (341)
...+++.|...++.....+....+ +.........+...++++||-|-
T Consensus 91 ~~~le~~L~e~~e~~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A 140 (155)
T 2oto_A 91 RQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQA 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444333333333 11111222223445666777663
No 161
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.75 E-value=2.5e+02 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019425 254 LIKNQEIMRKKFKEIEERE 272 (341)
Q Consensus 254 L~~nq~~~~~k~~~lee~~ 272 (341)
|+.|-..+.+.|..||++.
T Consensus 35 ~~~~~~~~EKTIDDLEDkL 53 (77)
T 3mtu_E 35 LRVNYGSFVSEYNDLEEKV 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 162
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=23.74 E-value=2.8e+02 Score=22.05 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHhHHHHHH
Q 019425 230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEER---EITSLRLRDATILDLEEQIR 291 (341)
Q Consensus 230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~---~~~~~~~k~~~i~dL~EQlr 291 (341)
|...+.||...+.-.....-..-.....|..|-.++-+..-. ....+....+-|..|+.||.
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555665554433222223334455566666665443322 22334444556666766664
No 163
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.36 E-value=3e+02 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 259 EIMRKKFKEIEEREITSLRLRD 280 (341)
Q Consensus 259 ~~~~~k~~~lee~~~~~~~~k~ 280 (341)
..++.++..|+.++......++
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665554443
No 164
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.02 E-value=3.6e+02 Score=27.03 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=16.1
Q ss_pred HHHHHHHhHhHHHHHHhHhHhhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYIE 298 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~le 298 (341)
.+...++|.+|+++++++---|.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788888888888765553
No 165
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.66 E-value=30 Score=36.74 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=48.7
Q ss_pred hhhccccccc--ccceeeeeeecc--------chhHHHHhhhhcCCc-eeee----ccccEEEEecCCc---eeeecccc
Q 019425 80 DEFVRFCGSH--IDHVEELIFIRY--------KEGHAVRHWKDTQHW-YSLD----LRTQQIWDYVGDN---YVHRLNQS 141 (341)
Q Consensus 80 ~dlc~fC~~~--~e~w~cL~c~Ry--------~~~Ha~~H~~et~H~-~am~----l~t~rVWdY~~D~---yVhrl~q~ 141 (341)
...|.+||.. .....|+.|++| ...|-..|-.-+.|- ..+- +...-+=||.|.. |+=-.+..
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~ 90 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSA 90 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC-
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeec
Confidence 3479999986 778889998766 568999999989986 3333 3445666999865 66666778
Q ss_pred CCCCceeeecC
Q 019425 142 KADGKLVEMNS 152 (341)
Q Consensus 142 k~DGKlVEl~~ 152 (341)
|+|+.+|=+-.
T Consensus 91 ~~~~~~~~~cr 101 (802)
T 2xzl_A 91 KSEAVVVLLCR 101 (802)
T ss_dssp -----CEEEET
T ss_pred cCCceEEEEeC
Confidence 88887776543
No 166
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=22.56 E-value=74 Score=19.87 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019425 190 RLLATQLETQRQYYESL 206 (341)
Q Consensus 190 ~LLtSQLEsQR~yyE~~ 206 (341)
.||.--.|.||+-|+..
T Consensus 9 ~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888999999999864
No 167
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.51 E-value=3.1e+02 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 019425 260 IMRKKFKEIEERE 272 (341)
Q Consensus 260 ~~~~k~~~lee~~ 272 (341)
.++.++..+|..+
T Consensus 79 ~~q~~i~~lE~eL 91 (129)
T 3tnu_B 79 DARNKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 3344444444433
No 168
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.36 E-value=2.6e+02 Score=21.34 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.1
Q ss_pred HHHHHHhHhHHHHHHhHhH
Q 019425 277 RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf 295 (341)
...+.+|.+|+-||.|+.-
T Consensus 55 ~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 55 SALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445667888888888754
No 169
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=22.30 E-value=3.1e+02 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 227 ASKMQDIQNELDICEEAKKAVADVNSKLIKNQEI 260 (341)
Q Consensus 227 ~~k~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~ 260 (341)
..|..+-..+|...++|...++++.+.|..||+.
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkE 98 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFRDIYKRFSEYQKE 98 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445555556666666666666666666666653
No 170
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.11 E-value=2.5e+02 Score=21.88 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 019425 228 SKMQDIQNELDICEEAKKAVA-DVNSKLIKNQEIMRKK 264 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~-~ln~~L~~nq~~~~~k 264 (341)
..+..++..+..++.++..++ ++..-++..|+-+..|
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 74 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVK 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665543 4555555555544443
No 171
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.10 E-value=3.3e+02 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=15.4
Q ss_pred HHHHHHHhHhHHHHHHhHhHhh
Q 019425 276 LRLRDATILDLEEQIRDLTVYI 297 (341)
Q Consensus 276 ~~~k~~~i~dL~EQlrDLmf~l 297 (341)
.+...++|.+|+++++.+---|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 78 SREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455578888888888875544
No 172
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=22.10 E-value=1.9e+02 Score=20.03 Aligned_cols=9 Identities=44% Similarity=0.553 Sum_probs=3.5
Q ss_pred HHHhHhHHH
Q 019425 280 DATILDLEE 288 (341)
Q Consensus 280 ~~~i~dL~E 288 (341)
..+|.+|+.
T Consensus 37 ~~RIDdLE~ 45 (48)
T 3ci9_A 37 SSRIDDLEK 45 (48)
T ss_dssp HHHHHTTC-
T ss_pred HhHHHHHHh
Confidence 334444443
No 173
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=22.06 E-value=2.9e+02 Score=21.67 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=6.6
Q ss_pred HhHhHHHHHHhHhH
Q 019425 282 TILDLEEQIRDLTV 295 (341)
Q Consensus 282 ~i~dL~EQlrDLmf 295 (341)
.+..-=.|||||.+
T Consensus 56 ~vk~W~~~vrdlaY 69 (115)
T 3qfl_A 56 QDKLWADEVRELSY 69 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555544
No 174
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.95 E-value=3.8e+02 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019425 233 IQNELDICEEAKKAVADVNSKLI 255 (341)
Q Consensus 233 l~~kl~kl~~E~~~~~~ln~~L~ 255 (341)
|+.++.-++..++.++.-|+.|.
T Consensus 108 Lqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 108 GTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344443
No 175
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.85 E-value=3.1e+02 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 236 ELDICEEAKKAVADVNSKLIKNQEIMRK 263 (341)
Q Consensus 236 kl~kl~~E~~~~~~ln~~L~~nq~~~~~ 263 (341)
++..|..|...|+.-|..|...-+.|+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444455567777777777865
No 176
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.36 E-value=2.8e+02 Score=21.19 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019425 247 VADVNSKLIKNQEIMRKKFKEI 268 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~~l 268 (341)
+.+|=..|..++..+.+.+.-+
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554444333
No 177
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=21.31 E-value=2.9e+02 Score=21.42 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=7.6
Q ss_pred HHhHhHHHHHHhH
Q 019425 281 ATILDLEEQIRDL 293 (341)
Q Consensus 281 ~~i~dL~EQlrDL 293 (341)
.++.+|+++|.+|
T Consensus 70 ~kl~~L~~eL~eL 82 (86)
T 1cxz_B 70 RRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4556666666655
No 178
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=21.31 E-value=3.7e+02 Score=22.69 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhh
Q 019425 228 SKMQDIQNELDICEEAKKAVADVNSKLIK-NQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 228 ~k~~~l~~kl~kl~~E~~~~~~ln~~L~~-nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~lea 299 (341)
+++..++..++.+..+++.+.+-=....- =...|.+.++.+=++. ..+...++-+.||++.+.++.--+.-
T Consensus 54 ~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQ-qfl~~QedL~~DL~eDL~ka~etf~l 125 (141)
T 3okq_A 54 KKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQ-QFLTLQEELILDLKEDLGKALETFDL 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666555444322111111 1335666665553322 34556667799999999988554444
No 179
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.10 E-value=4.4e+02 Score=23.39 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.4
Q ss_pred HHHHHHHhHhHHHHH
Q 019425 276 LRLRDATILDLEEQI 290 (341)
Q Consensus 276 ~~~k~~~i~dL~EQl 290 (341)
+.+|..+|++|+.+|
T Consensus 184 LNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 184 LNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 334445555555444
No 180
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=20.98 E-value=1.7e+02 Score=22.74 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.1
Q ss_pred hHhHHHHHHhHhHhhhh
Q 019425 283 ILDLEEQIRDLTVYIEA 299 (341)
Q Consensus 283 i~dL~EQlrDLmf~lea 299 (341)
...|++.+-|++|||=.
T Consensus 74 ~~~l~eElgDvL~~l~~ 90 (111)
T 2oie_A 74 RAALQEELSDVLIYLVA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999999999854
No 181
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.83 E-value=3.2e+02 Score=21.69 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHhHhHHHHHHhHhH
Q 019425 277 RLRDATILDLEEQIRDLTV 295 (341)
Q Consensus 277 ~~k~~~i~dL~EQlrDLmf 295 (341)
...+.+|.+|+-||.|...
T Consensus 55 ~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 55 SALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445678889999998876
No 182
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.79 E-value=2.9e+02 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=10.2
Q ss_pred HHHHHhHhHHHHHHhHhHh
Q 019425 278 LRDATILDLEEQIRDLTVY 296 (341)
Q Consensus 278 ~k~~~i~dL~EQlrDLmf~ 296 (341)
..+.++..|+.+++|++-+
T Consensus 89 ~l~~~~~~l~~~~~~~~~~ 107 (112)
T 1l8d_A 89 ELERELRRIDMEIKRLTPL 107 (112)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445667777777766543
No 183
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=20.75 E-value=2.7e+02 Score=20.88 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 247 VADVNSKLIKNQEIMRKKFKEIEER 271 (341)
Q Consensus 247 ~~~ln~~L~~nq~~~~~k~~~lee~ 271 (341)
-.+||++|...+.-.+..+..|+..
T Consensus 36 YtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 36 YVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3478888888777777777666654
No 184
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=20.72 E-value=31 Score=36.68 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=48.0
Q ss_pred hhccccccc--ccceeeeeeecc--------chhHHHHhhhhcCCc-eeeec----cccEEEEecCCc---eeeeccccC
Q 019425 81 EFVRFCGSH--IDHVEELIFIRY--------KEGHAVRHWKDTQHW-YSLDL----RTQQIWDYVGDN---YVHRLNQSK 142 (341)
Q Consensus 81 dlc~fC~~~--~e~w~cL~c~Ry--------~~~Ha~~H~~et~H~-~am~l----~t~rVWdY~~D~---yVhrl~q~k 142 (341)
..|.+||.. .....|+.|++| ...|-..|-.-+.|- ..+-. ...-+=||.|.. |+=-.+..|
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~~ 86 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK 86 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC--
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceecc
Confidence 469999986 778889888766 568999999989986 33333 344666999865 666667788
Q ss_pred CCCceeee
Q 019425 143 ADGKLVEM 150 (341)
Q Consensus 143 ~DGKlVEl 150 (341)
+|+.+|=+
T Consensus 87 ~~~~~~~~ 94 (800)
T 2wjy_A 87 ADSVVVLL 94 (800)
T ss_dssp ---CCEEC
T ss_pred cCceEEEE
Confidence 88877654
No 185
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.36 E-value=4.8e+02 Score=23.58 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=4.9
Q ss_pred HhHHHHHHhHhH
Q 019425 284 LDLEEQIRDLTV 295 (341)
Q Consensus 284 ~dL~EQlrDLmf 295 (341)
++|.||---+..
T Consensus 209 ~~~~~~~~~~~~ 220 (228)
T 3q0x_A 209 AQLREQYDKHLL 220 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhe
Confidence 344444433333
No 186
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.35 E-value=3e+02 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019425 231 QDIQNELDICEEAKKAVADVNSKLI 255 (341)
Q Consensus 231 ~~l~~kl~kl~~E~~~~~~ln~~L~ 255 (341)
.+|...++.+.+|...+++.|+-|.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554
No 187
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.30 E-value=3.6e+02 Score=22.09 Aligned_cols=10 Identities=0% Similarity=0.508 Sum_probs=4.7
Q ss_pred HHhHhHHHHH
Q 019425 281 ATILDLEEQI 290 (341)
Q Consensus 281 ~~i~dL~EQl 290 (341)
.+|.+++.+|
T Consensus 119 ~~I~~mk~~l 128 (130)
T 4dnd_A 119 EAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 188
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.29 E-value=69 Score=20.98 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019425 225 AVASKMQDIQNELDICEEAKK 245 (341)
Q Consensus 225 ~~~~k~~~l~~kl~kl~~E~~ 245 (341)
++.+|++.|+.+++.++++..
T Consensus 8 avKkKiq~lq~q~d~aee~~~ 28 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVA 28 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888889888888876653
Done!