BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019426
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/242 (86%), Positives = 227/242 (93%)
Query: 46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKEL 105
HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE
Sbjct: 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 106 AQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGN 165
AQNETDS K+++SSE+ IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQET A GN
Sbjct: 68 AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 166 ELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRL 225
ELQ+PD Y MENL+RLSD NY+PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRL
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 226 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285
FDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 286 FE 287
FE
Sbjct: 248 FE 249
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 158/267 (59%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + DS + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + CF
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKCF 259
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 165/276 (59%), Gaps = 17/276 (6%)
Query: 21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ+K++ Q + E
Sbjct: 9 AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEEC 68
Query: 81 KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
+I++I+ N Q+I + L DS + ++ KL + ++ +
Sbjct: 69 LEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSAR-------QDDARKLMHMADTIEEGTM 121
Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV 200
KE+++ I+ LW D IQ + +E QL D A Y++ +L+RL YVPT+ DVL +RV
Sbjct: 122 PKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 181
Query: 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260
+TTG++E QFS + +R+FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 182 KTTGIIETQFSFKDLN------FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 235
Query: 261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NRM E+ LF+ + C +F TS +
Sbjct: 236 LAEDEEMNRMHESMHLFNSI----CNNKWFTDTSII 267
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 163/277 (58%), Gaps = 17/277 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 12 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 71
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 72 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 124
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 125 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 184
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 185 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 238
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NRM E+ +LFD + C +F TS +
Sbjct: 239 VLAEDEEMNRMHESMKLFDSI----CNNKWFTDTSII 271
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 161/276 (58%), Gaps = 17/276 (6%)
Query: 21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ K++ Q G+ E
Sbjct: 3 AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQDGYSLEEC 62
Query: 81 KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
+I++I+ N Q+I + L DS + ++ KL ++
Sbjct: 63 LEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSAR-------QDDARKLXHXADTIEEGTX 115
Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV 200
KE ++ I+ LW D IQ + +E QL D A Y++ +L+RL YVPT+ DVL +RV
Sbjct: 116 PKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 175
Query: 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260
+TTG++E QFS + +R FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 176 KTTGIIETQFSFKDLN------FRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 229
Query: 261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NR E+ +LFD + C +F TS +
Sbjct: 230 LAEDEEXNRXHESXKLFDSI----CNNKWFTDTSII 261
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 163/277 (58%), Gaps = 17/277 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 68 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 120
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 121 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 180
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 181 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NRM E+ +LFD + C +F TS +
Sbjct: 235 VLAEDEEMNRMHESMKLFDSI----CNNKWFTDTSII 267
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K+ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWF 259
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 8 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 67
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 68 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 120
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 121 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 174
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 175 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 232
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 65 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 118 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 172 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 229
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 151/249 (60%), Gaps = 14/249 (5%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I
Sbjct: 1 EDGEKAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + DS + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q + E QL D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H
Sbjct: 113 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCF 286
D + F
Sbjct: 227 DSICNNKWF 235
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + DS + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWF 259
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 14/245 (5%)
Query: 42 KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101
KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I +
Sbjct: 4 KAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 62
Query: 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETY 161
L + DS + + +L + G + +T ELA I+ LW D +Q +
Sbjct: 63 MGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACF 115
Query: 162 AHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGE 221
E QL D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H
Sbjct: 116 NRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH----- 170
Query: 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD +
Sbjct: 171 -FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 229
Query: 282 KQPCF 286
F
Sbjct: 230 NNKWF 234
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 64 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 3 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 62
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 63 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 115
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 116 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 169
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 170 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 227
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 162/277 (58%), Gaps = 17/277 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VPTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NRM E+ +LFD + C +F TS +
Sbjct: 232 VLAEDEEMNRMHESMKLFDSI----CNNKWFTDTSII 264
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 152/248 (61%), Gaps = 17/248 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + ++ KL + ++ + KE+++ I+ LW D IQ + +E Q
Sbjct: 66 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L+RL YVPT+ DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 119 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + C
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI----CNNK 228
Query: 289 FFCATSAL 296
+F TS +
Sbjct: 229 WFTDTSII 236
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 197 bits (501), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 168/278 (60%), Gaps = 19/278 (6%)
Query: 20 NAADSEENAQTAEIERRIEQET-KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78
+A D ++ I+R + ++ KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSED 63
Query: 79 ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP 138
E K Y V+++N Q+I + L + ++ + + +L + G +
Sbjct: 64 ECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEG 116
Query: 139 RLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYA 198
+T ELA I+ LW D +Q ++ E QL D A+Y++ +L R+S +NY+PT+ DVL
Sbjct: 117 VMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRT 176
Query: 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD 258
RV+TTG+VE F+ + +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 177 RVKTTGIVETHFTFKDLY------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 259 QTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
L EDE+ NRM E+ +LFD + C +F TS +
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSI----CNNKWFTETSII 264
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVG QR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
D+ + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 64 FGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGG R+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGA ESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
L EDE+ NRM E+ +LFD + F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 158/259 (61%), Gaps = 18/259 (6%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q ++ E QL D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEVFFCATSAL 296
D + C +F TS +
Sbjct: 227 DSI----CNNKWFTETSII 241
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYL 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 17/248 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
++ + + +L + G + +T ELA I+ LW D +Q ++ E Q
Sbjct: 64 FGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ + +++FDV
Sbjct: 117 LNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + C
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI----CNNK 226
Query: 289 FFCATSAL 296
+F TS +
Sbjct: 227 WFTETSII 234
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 157/259 (60%), Gaps = 18/259 (6%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q ++ E L D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYLLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEVFFCATSAL 296
D + C +F TS +
Sbjct: 227 DSI----CNNKWFTETSII 241
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 149/248 (60%), Gaps = 17/248 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + ++ KL + ++ + KE+++ I+ LW D IQ + +E Q
Sbjct: 65 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L+RL YVPT+ DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 118 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
GGQR+ER+KWIH FEGV+ +IF AA+S YD L ED++ NRM E+ LF+ + C
Sbjct: 172 GGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSI----CNHR 227
Query: 289 FFCATSAL 296
+F TS +
Sbjct: 228 YFATTSIV 235
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 144/249 (57%), Gaps = 18/249 (7%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + GF ++K Y V+++N Q++ + L
Sbjct: 14 KLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVE 73
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRL-DYPRLTKELAEDIETLWADPAIQETYAHGNEL 167
D E K + + ++ R+ D + EL + LW D IQE + E
Sbjct: 74 YGDK-------ERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY 126
Query: 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 227
QL D A Y++++L R+ +Y PT+ D+L RV+TTG+VE F+ H +RLFD
Sbjct: 127 QLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLH------FRLFD 180
Query: 228 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
VGGQR+ER+KWIH FE V+A+IFC A+S YDQ L EDE NRM E+ LFD + C
Sbjct: 181 VGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSI----CNN 236
Query: 288 VFFCATSAL 296
FF TS +
Sbjct: 237 KFFIDTSII 245
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 22/260 (8%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 18 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 77
Query: 92 YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYPRLT---KELAED 147
+ ++ + D++K E NK + + E+ D +++ +
Sbjct: 78 FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVEKVSAFENPYVDA 125
Query: 148 IETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVE 207
I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL RV TTG++E
Sbjct: 126 IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIE 185
Query: 208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E + +
Sbjct: 186 YPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE 239
Query: 268 NRMMETKELFDWVLKQPCFE 287
NRM E+K LF ++ P F+
Sbjct: 240 NRMEESKALFRTIITYPWFQ 259
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 22/272 (8%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYP 138
+ + +++ N++ ++ + D++K E NK + + E+ D
Sbjct: 66 KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVE 113
Query: 139 RLT---KELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
+++ + I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DV
Sbjct: 114 KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 173
Query: 196 LYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255
L RV TTG++E F ++R+ DVGGQR+ERRKWIH FE V++++F A+S
Sbjct: 174 LRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 227
Query: 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
EYDQ L E + +NRM E+K LF ++ P F+
Sbjct: 228 EYDQVLVESDNENRMEESKALFRTIITYPWFQ 259
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 22/272 (8%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYP 138
+ + +++ N++ ++ + D++K E NK + + E+ D
Sbjct: 68 KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVE 115
Query: 139 RLT---KELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
+++ + I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DV
Sbjct: 116 KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 175
Query: 196 LYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255
L RV TTG++E F ++R+ DVGGQR+ERRKWIH FE V++++F A+S
Sbjct: 176 LRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 229
Query: 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
EYDQ L E + +NRM E+K LF ++ P F+
Sbjct: 230 EYDQVLVESDNENRMEESKALFRTIITYPWFQ 261
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 149/261 (57%), Gaps = 24/261 (9%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 12 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 71
Query: 92 YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIG----GRLDYPRLTKELAE 146
+ ++ + D++K E NK + + E+ D P
Sbjct: 72 FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA---- 119
Query: 147 DIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVV 206
I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL V TTG++
Sbjct: 120 -IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGII 178
Query: 207 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 266
E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E +
Sbjct: 179 EYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 267 KNRMMETKELFDWVLKQPCFE 287
+NRM E+K LF ++ P F+
Sbjct: 233 ENRMEESKALFRTIITYPWFQ 253
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 143/243 (58%), Gaps = 22/243 (9%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLG GESGKST KQ++++ +G+ + + + + +++ N++ ++ +
Sbjct: 9 KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRA------- 61
Query: 109 ETDSMKFVVSSE-NKEIGEKLSEIGGRLDYPRLT---KELAEDIETLWADPAIQETYAHG 164
D++K E NK + + E+ D +++ + I++LW DP IQE Y
Sbjct: 62 -MDTLKIPYKYEHNKAHAQLVREV----DVEKVSAFENPYVDAIKSLWNDPGIQECYDRR 116
Query: 165 NELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYR 224
E QL D Y++ +L R++D +Y+PT+ DVL RV TTG++E F ++R
Sbjct: 117 REYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFD------LQSVIFR 170
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E + +NRM E+K LF ++ P
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 285 CFE 287
F+
Sbjct: 231 WFQ 233
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 148/268 (55%), Gaps = 29/268 (10%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKST KQ++++ FD+ + + I++NV + ++V
Sbjct: 4 EDGEKAAREV-KLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRV 62
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------I 148
L D ++L D+ +N+ G+KL R P + + E I
Sbjct: 63 LVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAI 113
Query: 149 ETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEI 208
LW D IQ Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E
Sbjct: 114 RALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHET 173
Query: 209 QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 268
F+ H +++FDVGGQR+ER+KW FEGV+A+IFC A+S+YDQ L ED Q N
Sbjct: 174 HFTFKDLH------FKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTN 227
Query: 269 RMMETKELFDWVLKQPCFEVFFCATSAL 296
RM E+ +LFD + C +F TS +
Sbjct: 228 RMHESMKLFDSI----CNNKWFTDTSII 251
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 154/275 (56%), Gaps = 24/275 (8%)
Query: 20 NAADSEENAQTAEIERRIEQ--ETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
+A D ++ I+R + + E +A + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGREFDQ 65
Query: 78 AELKSYISVIHANVYQTIKVLYDGSKEL------AQNETDSMKFVVSSENKEIGEKLSEI 131
L + I N+ + +VL D +L ++NE M F+++ ENK G +
Sbjct: 66 KALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGM-FLMAFENKA-GLPVEPA 123
Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPT 191
+L P L+ LW D I+E ++ +E QL + YF++NL R+ NY P+
Sbjct: 124 TFQLYVPALS--------ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 175
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 251
K D+L AR T G+VE F KK +++ DVGGQR++R+KW F+G+++++F
Sbjct: 176 KQDILLARKATKGIVEHDFVI----KKIP--FKMVDVGGQRSQRQKWFQCFDGITSILFM 229
Query: 252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
+ SEYDQ L ED + NR++E+ +F+ ++ F
Sbjct: 230 VSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLF 264
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 128/228 (56%), Gaps = 18/228 (7%)
Query: 50 LLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNE 109
+ LLG+GESGKSTI KQ+K+LF GF E E ++ S I +NV + L + S L
Sbjct: 8 VXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH-- 65
Query: 110 TDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQL 169
K+ S+ E +E L + + EL D+E LWAD IQ TY + QL
Sbjct: 66 --PXKYQPKSK-----EFTTEDPVTLPF---SPELVGDVEALWADEGIQATYEESAKFQL 115
Query: 170 PDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVG 229
PDCA Y EN++R++ +YVPT++D+++ R +TTG+ E F + L DVG
Sbjct: 116 PDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFV------VKDIPFHLIDVG 169
Query: 230 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
GQR+ER+ W+ F V IF +++EYD L+ED +R+ E+ +F
Sbjct: 170 GQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVF 217
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 20/271 (7%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
L GF+ ++E + + I N+ + I+ + L V N E ++
Sbjct: 63 LHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPENQFRV 114
Query: 129 SEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDA 186
I ++ P E E + LW D ++ Y NE QL DCA YF++ + +
Sbjct: 115 DYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD 174
Query: 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246
+YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI F V+
Sbjct: 175 DYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVT 228
Query: 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
A+IF A S Y+ + ED Q NR+ E LF
Sbjct: 229 AIIFVVASSSYNMVIREDNQTNRLQEALNLF 259
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 141/271 (52%), Gaps = 20/271 (7%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
L GF+ + E + + I N+ + I+ + L V N E ++
Sbjct: 63 LHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPENQFRV 114
Query: 129 SEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDA 186
I ++ P E E + LW D ++ Y NE QL DCA YF++ + +
Sbjct: 115 DYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD 174
Query: 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246
+YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI F V+
Sbjct: 175 DYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVT 228
Query: 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
A+IF A S Y+ + ED Q NR+ E LF
Sbjct: 229 AIIFVVASSSYNMVIREDNQTNRLQEALNLF 259
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 145/274 (52%), Gaps = 20/274 (7%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRA 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP- 138
+ + I++NV + ++VL D ++L D+ +N+ G+KL R
Sbjct: 66 REEFRPTIYSNVIKGMRVLVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRAPMAA 118
Query: 139 ------RLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTK 192
R+ + I LW D IQ Y E QL + YF++NL +L +Y+P++
Sbjct: 119 QGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQ 178
Query: 193 DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCA 252
D+L AR T G+ E F + +++ DVGGQR+ER++W F+ V++++F
Sbjct: 179 QDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232
Query: 253 AISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
+ SE+DQ L ED Q NR+ E+ +F+ ++ F
Sbjct: 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 20/249 (8%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP-------RLTKELAEDIETLWADPAI 157
L D+ +N+ G+KL R R+ + I LW D I
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGI 119
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E F +
Sbjct: 120 QNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------E 173
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++ DVGGQR+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+ +F
Sbjct: 174 IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 233
Query: 278 DWVLKQPCF 286
+ ++ F
Sbjct: 234 ETIVNNRVF 242
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 24/280 (8%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD-------EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS--- 119
L GF+ + KS A Q IK + KE + +M +V
Sbjct: 63 LHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIK---NNLKEAIETIVAAMSNLVPPVEL 119
Query: 120 ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFM 177
N E ++ I ++ P E E + LW D ++ Y NE QL DCA YF+
Sbjct: 120 ANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFL 179
Query: 178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRK 237
+ + + +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRK
Sbjct: 180 DKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRK 233
Query: 238 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
WI F V+A+IF A S Y+ + ED Q NR+ E LF
Sbjct: 234 WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 18/277 (6%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
L GF+ E + ++ S ++ + + KE + +M +V N
Sbjct: 63 LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
E ++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
F V+A+IF A S Y+ + ED Q NR+ E LF
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 18/277 (6%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
L GF+ E + ++ S ++ + + KE + +M +V N
Sbjct: 63 LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
E ++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
F V+A+IF A S Y+ + ED Q NR+ E LF
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 20/249 (8%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP-------RLTKELAEDIETLWADPAI 157
L D+ +N+ G+KL R R+ + I LW D I
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGI 119
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E F +
Sbjct: 120 QNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------E 173
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++ DVGG R+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+ +F
Sbjct: 174 IKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 233
Query: 278 DWVLKQPCF 286
+ ++ F
Sbjct: 234 ETIVNNRVF 242
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL- 281
+ ++DVGGQ R W H F+ +IF ++ D+ + ++ +RM+ EL D VL
Sbjct: 66 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 125
Query: 282 ----KQPCFEVFFCATSALHITAFVACEHVSGMHW 312
KQ A +A IT + + HW
Sbjct: 126 VFANKQDLPN----AMNAAEITDKLGLHSLRQRHW 156
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 426
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 104
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 62 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 269
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M++ EL D VL
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII 104
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
KDD L V T P E +G + FD+GG RR W + ++ ++F
Sbjct: 43 KDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 95
Query: 251 CAAISEYDQTLFEDEQKNRMM 271
+++++ L E+ + +M
Sbjct: 96 LVDCADHERLLESKEELDSLM 116
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
KDD L V T P E +G + FD+GG RR W + ++ ++F
Sbjct: 46 KDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 98
Query: 251 CAAISEYDQTLFEDEQKNRMM 271
+++++ L E+ + +M
Sbjct: 99 LVDCADHERLLESKEELDSLM 119
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H ++ A+IF ++ D+ E+ +M+ E+ + +L
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAIL 121
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 24/127 (18%)
Query: 208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
I FS + + K S + +FD+ GQ R W H ++ A+IF + + +
Sbjct: 55 IGFS-IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF----------VIDSSDR 103
Query: 268 NRMMETKELFDWVLKQPCFE------VFFC-------ATSALHITAFVACEHVSGMHWQT 314
RM+ KE D +L P + +FF A +++ ++ + E++ W
Sbjct: 104 LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI 163
Query: 315 VGNFFLK 321
+ +K
Sbjct: 164 CASDAIK 170
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
KDD L V T P E +G + FD+GG RR W + ++ ++F
Sbjct: 37 KDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVF 89
Query: 251 CAAISEYDQTLFEDEQKNRMM 271
+++++ L E+ + +M
Sbjct: 90 LVDCADHERLLESKEELDSLM 110
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 49 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 107
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 48 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 106
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H + +IF ++ ++ E+ +RM+ +EL D ++
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAII 121
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M+ EL D VL
Sbjct: 63 FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVL 121
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD--WV 280
+ ++DVGGQ R W H + VIF ++ + E RM+ EL + W+
Sbjct: 46 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWL 105
Query: 281 L---KQPCFEVFFCATSALHITAFVACEHVSGMHW 312
+ KQ E A SA IT + + W
Sbjct: 106 VFANKQDLPE----AMSAAEITEKLGLHSIRNRPW 136
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ ++DVGG R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 48 FTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 106
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD--WV 280
+ ++DVGGQ R W H + VIF ++ + E RM+ EL + W+
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWL 122
Query: 281 L---KQPCFEVFFCATSALHITAFVACEHVSGMHW 312
+ KQ E A SA IT + + W
Sbjct: 123 VFANKQDLPE----AMSAAEITEKLGLHSIRNRPW 153
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
++D+GGQR R W FE +I+ I D+ FE+ + +E K
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEE-----EKLS 117
Query: 285 CFEVFFCATSALHITAFVACEHVSGMHWQTV 315
C V A +TA A E G++ T+
Sbjct: 118 CVPVLIFANKQDLLTAAPASEIAEGLNLHTI 148
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD--WV 280
+ ++DVGGQ R W H + VIF ++ + E RM+ EL + W+
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWL 122
Query: 281 L---KQPCFEVFFCATSALHITAFVACEHVSGMHW 312
+ KQ E A SA IT + + W
Sbjct: 123 VFANKQDLPE----AMSAAEITEKLGLHSIRNRPW 153
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
++D+GGQR R W FE +I+ I D+ FE+ + +E K
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEE-----EKLS 116
Query: 285 CFEVFFCATSALHITAFVACEHVSGMHWQTV 315
C V A +TA A E G++ T+
Sbjct: 117 CVPVLIFANKQDLLTAAPASEIAEGLNLHTI 147
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
KDD L V T P E +G + FD+GG RR W + ++ ++F
Sbjct: 56 KDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVF 108
Query: 251 CAAISEYDQTLFEDEQKNRMM 271
+++ + + + N +M
Sbjct: 109 LVDCADHSRLVESKVELNALM 129
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
++D+GGQR R W FE +I+ I D+ FE+ + +E K
Sbjct: 52 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEE-----EKLS 104
Query: 285 CFEVFFCATSALHITAFVACEHVSGMHWQTV 315
C V A +TA A E G++ T+
Sbjct: 105 CVPVLIFANKQDLLTAAPASEIAEGLNLHTI 135
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
K +L+D+GGQ R W GVSA+++
Sbjct: 73 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 105
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278
++D+GGQ + R W + +AVIF ++ D+ ++ + M++ +EL D
Sbjct: 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
K +L+D+GGQ R W GVSA+++
Sbjct: 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD--WV 280
+ ++DVGGQ R W H + VIF ++ + E RM+ EL + W+
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWL 122
Query: 281 L---KQPCFEVFFCATSALHITAFVACEHVSGMHW 312
+ KQ E A SA IT + + W
Sbjct: 123 VFANKQDLPE----AMSAAEITEKLGLHSIRNRPW 153
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRL 183
L + G +D+ ++ +E A+ ++ + DP + ET Q+P Y E LQRL
Sbjct: 234 LVGVKGDIDFTKIDRERAKKLQLEYYDPLMHETL-----FQMP---KYIRETLQRL 281
>pdb|1TI2|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI4|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI6|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLD|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLE|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLF|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
Length = 875
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 166 ELQLPDCANYFMENLQRLSD-ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYR 224
++ LP C N+ ++ ++ + Y+P + RV + I+ PVGE E+YR
Sbjct: 537 DIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIE--PVGESMSDYEIYR 594
Query: 225 LF 226
LF
Sbjct: 595 LF 596
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 207 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFE----GVSAVIFCAAISEYDQTLF 262
+I+F + K+ G +Y +VGG + W+++ E G A+S+Y
Sbjct: 114 KIEFPVLANGKRRGFIY---NVGGLVTDI-AWLNIEENTDIGKDIQYLAVAVSQY----- 164
Query: 263 EDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQ 313
DE N +E +FD C ++F TS LH H G W
Sbjct: 165 MDEPLNEHLE---MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
EH+ G ++DVGGQ++ R W + FE +I+ + D+ +D Q+
Sbjct: 56 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQR 104
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
EH+ G ++DVGGQ++ R W + FE +I+ + D+ +D Q+
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQR 106
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
EH+ G ++DVGGQ++ R W + FE +I+ + D+ +D Q+
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRMQDCQR 106
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 206 VEIQFSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIF---CAAISEYDQTL 261
++ + P E G + + FD+GG RR W F V+ ++F A +D+
Sbjct: 51 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR 110
Query: 262 FEDEQKNRMMETKEL 276
E + + E K++
Sbjct: 111 VELDALFNIAELKDV 125
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 212 PVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIF---CAAISEYDQTLFEDEQK 267
P E G + + FD+GG RR W F V+ ++F A +D+ E +
Sbjct: 35 PTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL 94
Query: 268 NRMMETKEL 276
+ E K++
Sbjct: 95 FNIAELKDV 103
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 276
++++D+GGQ + R W + AVI+ + D+ + M+E +EL
Sbjct: 48 FQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL 101
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
++D+GG R R W FE +I+ I D+ FE+ + +E K
Sbjct: 52 VWDIGGLRKIRPYWRSYFENTDILIY--VIDSADRKRFEETGQELTELLEE-----EKLS 104
Query: 285 CFEVFFCATSALHITAFVACEHVSGMHWQTV 315
C V A +TA A E G++ T+
Sbjct: 105 CVPVLIFANKQDLLTAAPASEIAEGLNLHTI 135
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
EH+ G ++DVGGQ++ R W + FE +I+ + D+ +D Q+
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW--VVDSADRQRXQDCQR 106
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257
+ +FD+GG + R W ++ + AVIF S++
Sbjct: 65 FTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,731,314
Number of Sequences: 62578
Number of extensions: 392589
Number of successful extensions: 1382
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 132
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)