Query 019426
Match_columns 341
No_of_seqs 216 out of 1564
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082 G-protein alpha subuni 100.0 6.6E-86 1.4E-90 632.0 23.3 301 9-341 1-304 (354)
2 KOG0085 G protein subunit Galp 100.0 3E-81 6.4E-86 561.5 9.6 302 7-340 4-308 (359)
3 smart00275 G_alpha G protein a 100.0 1.9E-74 4.1E-79 560.1 24.7 288 28-341 2-293 (342)
4 PF00503 G-alpha: G-protein al 100.0 4.5E-73 9.7E-78 559.8 24.6 302 22-341 33-348 (389)
5 KOG0099 G protein subunit Galp 100.0 1E-73 2.2E-78 520.0 17.1 299 9-331 1-302 (379)
6 cd00066 G-alpha G protein alph 100.0 4.3E-70 9.4E-75 525.0 23.2 268 48-341 1-271 (317)
7 KOG0071 GTP-binding ADP-ribosy 99.7 1.2E-16 2.5E-21 134.2 7.4 88 200-310 46-134 (180)
8 KOG0070 GTP-binding ADP-ribosy 99.6 9.3E-16 2E-20 134.5 8.3 88 200-310 46-134 (181)
9 PF00025 Arf: ADP-ribosylation 99.5 9.2E-14 2E-18 122.6 10.3 88 200-310 43-131 (175)
10 KOG0073 GTP-binding ADP-ribosy 99.5 2.3E-14 5E-19 123.3 5.8 91 200-313 45-136 (185)
11 KOG0072 GTP-binding ADP-ribosy 99.4 2.2E-13 4.8E-18 115.1 6.1 85 200-307 47-132 (182)
12 KOG0074 GTP-binding ADP-ribosy 99.4 3.6E-13 7.9E-18 113.5 5.4 88 200-310 46-135 (185)
13 KOG0075 GTP-binding ADP-ribosy 99.3 5.6E-12 1.2E-16 107.0 6.9 85 200-307 50-135 (186)
14 KOG0076 GTP-binding ADP-ribosy 99.2 2.1E-11 4.6E-16 106.1 3.7 110 170-306 25-138 (197)
15 PLN00223 ADP-ribosylation fact 99.1 2.6E-10 5.6E-15 101.1 7.1 84 201-307 47-131 (181)
16 cd04155 Arl3 Arl3 subfamily. 99.0 2E-09 4.4E-14 93.3 10.0 74 218-308 55-129 (173)
17 cd04175 Rap1 Rap1 subgroup. T 99.0 3E-09 6.5E-14 91.5 9.8 72 220-308 48-120 (164)
18 cd04161 Arl2l1_Arl13_like Arl2 99.0 1.4E-09 3.1E-14 94.7 7.4 84 202-308 30-114 (167)
19 smart00177 ARF ARF-like small 98.9 1.6E-09 3.4E-14 95.2 7.1 74 217-307 53-127 (175)
20 cd04150 Arf1_5_like Arf1-Arf5- 98.9 1.9E-09 4.1E-14 93.1 6.8 74 217-307 40-114 (159)
21 cd04149 Arf6 Arf6 subfamily. 98.9 3.1E-09 6.7E-14 92.8 6.9 74 217-307 49-123 (168)
22 cd04158 ARD1 ARD1 subfamily. 98.9 7E-09 1.5E-13 90.3 7.9 74 217-307 39-113 (169)
23 PTZ00133 ADP-ribosylation fact 98.8 5.7E-09 1.2E-13 92.5 6.8 74 217-307 57-131 (182)
24 smart00178 SAR Sar1p-like memb 98.8 9.2E-09 2E-13 91.1 6.8 74 217-307 57-131 (184)
25 cd04110 Rab35 Rab35 subfamily. 98.7 5.7E-08 1.2E-12 87.1 9.8 69 221-308 55-124 (199)
26 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 3.5E-08 7.6E-13 85.7 8.1 83 201-308 30-113 (164)
27 cd04115 Rab33B_Rab33A Rab33B/R 98.7 6E-08 1.3E-12 84.3 9.4 71 221-308 51-123 (170)
28 cd04157 Arl6 Arl6 subfamily. 98.7 2.9E-08 6.2E-13 84.7 7.1 87 202-309 32-119 (162)
29 cd00154 Rab Rab family. Rab G 98.7 7.1E-08 1.5E-12 80.9 9.1 69 221-307 49-118 (159)
30 cd04122 Rab14 Rab14 subfamily. 98.7 7.6E-08 1.6E-12 83.1 9.4 71 221-309 51-122 (166)
31 cd01863 Rab18 Rab18 subfamily. 98.7 1.1E-07 2.5E-12 81.1 10.1 70 221-307 49-119 (161)
32 cd01865 Rab3 Rab3 subfamily. 98.7 8.2E-08 1.8E-12 82.9 9.1 70 221-308 50-120 (165)
33 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 4.2E-08 9.1E-13 85.9 7.0 75 217-308 55-130 (174)
34 smart00173 RAS Ras subfamily o 98.7 1.3E-07 2.8E-12 81.0 9.6 71 221-308 48-119 (164)
35 KOG0077 Vesicle coat complex C 98.7 9.2E-09 2E-13 89.2 2.2 74 217-307 60-134 (193)
36 cd04139 RalA_RalB RalA/RalB su 98.7 1.7E-07 3.7E-12 79.8 9.8 72 220-308 47-119 (164)
37 cd04125 RabA_like RabA-like su 98.6 1.5E-07 3.3E-12 83.1 9.7 70 221-308 49-119 (188)
38 cd04151 Arl1 Arl1 subfamily. 98.6 5.8E-08 1.2E-12 83.2 6.8 74 217-307 39-113 (158)
39 cd01861 Rab6 Rab6 subfamily. 98.6 1.5E-07 3.1E-12 80.4 8.8 69 221-307 49-118 (161)
40 cd04123 Rab21 Rab21 subfamily. 98.6 2E-07 4.3E-12 79.1 9.5 71 221-309 49-120 (162)
41 cd04160 Arfrp1 Arfrp1 subfamil 98.6 7.5E-08 1.6E-12 82.8 6.8 84 202-308 37-121 (167)
42 cd00879 Sar1 Sar1 subfamily. 98.6 7.7E-08 1.7E-12 84.9 7.0 74 217-307 59-133 (190)
43 cd04112 Rab26 Rab26 subfamily. 98.6 1.8E-07 3.8E-12 83.2 9.3 69 221-307 50-119 (191)
44 cd04154 Arl2 Arl2 subfamily. 98.6 1E-07 2.2E-12 83.0 6.8 75 217-308 54-129 (173)
45 cd04119 RJL RJL (RabJ-Like) su 98.6 3E-07 6.4E-12 78.5 9.3 71 220-307 48-123 (168)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 3.7E-07 8E-12 78.6 9.6 69 221-307 51-120 (166)
47 cd04137 RheB Rheb (Ras Homolog 98.5 3.3E-07 7.2E-12 80.0 8.9 70 221-307 49-119 (180)
48 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.5 2E-07 4.4E-12 82.4 7.5 72 219-307 50-122 (183)
49 cd04177 RSR1 RSR1 subgroup. R 98.5 5E-07 1.1E-11 78.2 9.6 71 221-308 49-120 (168)
50 smart00175 RAB Rab subfamily o 98.5 4.6E-07 9.9E-12 77.3 9.1 70 221-308 49-119 (164)
51 cd04134 Rho3 Rho3 subfamily. 98.5 6.3E-07 1.4E-11 79.6 10.2 70 221-309 48-119 (189)
52 PF08477 Miro: Miro-like prote 98.5 2.6E-07 5.7E-12 75.2 7.1 69 221-305 50-119 (119)
53 cd04156 ARLTS1 ARLTS1 subfamil 98.5 2.7E-07 5.9E-12 78.7 7.2 71 220-307 43-114 (160)
54 cd00878 Arf_Arl Arf (ADP-ribos 98.5 4.3E-07 9.3E-12 77.4 7.4 85 201-308 29-114 (158)
55 cd04113 Rab4 Rab4 subfamily. 98.4 1.6E-06 3.5E-11 74.1 9.5 70 221-308 49-119 (161)
56 cd04159 Arl10_like Arl10-like 98.4 8.6E-07 1.9E-11 74.4 7.6 86 201-309 30-116 (159)
57 cd00876 Ras Ras family. The R 98.4 1.5E-06 3.2E-11 73.5 9.1 71 221-308 47-118 (160)
58 COG1100 GTPase SAR1 and relate 98.4 1.5E-06 3.3E-11 78.2 8.3 73 221-310 54-127 (219)
59 PTZ00099 rab6; Provisional 98.3 1.7E-06 3.7E-11 76.6 7.6 71 219-307 27-98 (176)
60 cd04120 Rab12 Rab12 subfamily. 98.3 1.7E-06 3.6E-11 78.4 7.2 70 220-307 48-118 (202)
61 cd00157 Rho Rho (Ras homology) 98.3 6.7E-06 1.4E-10 70.6 9.8 72 221-310 48-120 (171)
62 cd00882 Ras_like_GTPase Ras-li 98.3 2.7E-06 5.8E-11 69.5 7.0 72 221-309 45-117 (157)
63 cd04129 Rho2 Rho2 subfamily. 98.1 1.7E-05 3.6E-10 70.2 10.3 69 221-307 49-118 (187)
64 cd04136 Rap_like Rap-like subf 98.1 8.6E-06 1.9E-10 69.4 7.7 72 220-308 48-120 (163)
65 cd04176 Rap2 Rap2 subgroup. T 98.1 7.8E-06 1.7E-10 69.9 7.4 70 221-307 49-119 (163)
66 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.3E-05 2.7E-10 71.8 8.1 75 219-307 48-123 (201)
67 cd01878 HflX HflX subfamily. 98.1 5.1E-05 1.1E-09 67.8 11.9 41 26-66 15-60 (204)
68 cd01875 RhoG RhoG subfamily. 98.1 1.1E-05 2.3E-10 72.0 7.4 70 220-307 50-120 (191)
69 smart00176 RAN Ran (Ras-relate 98.0 9.7E-06 2.1E-10 73.3 6.6 70 219-307 42-112 (200)
70 cd04105 SR_beta Signal recogni 98.0 1.5E-05 3.2E-10 72.1 6.9 75 219-307 46-122 (203)
71 cd01871 Rac1_like Rac1-like su 98.0 2.6E-05 5.7E-10 68.4 7.7 70 220-307 48-118 (174)
72 PTZ00369 Ras-like protein; Pro 98.0 2.5E-05 5.4E-10 69.3 7.6 71 220-307 52-123 (189)
73 cd04143 Rhes_like Rhes_like su 98.0 2.4E-05 5.3E-10 73.0 7.8 78 221-308 48-127 (247)
74 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 2.3E-05 5.1E-10 68.5 7.2 71 221-308 50-121 (172)
75 cd01860 Rab5_related Rab5-rela 97.9 2.8E-05 6.2E-10 66.2 7.5 73 218-308 47-120 (163)
76 cd04121 Rab40 Rab40 subfamily. 97.9 2.7E-05 5.9E-10 69.7 7.4 69 220-307 54-123 (189)
77 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.9 2.8E-05 6.2E-10 71.5 7.5 71 220-308 48-119 (222)
78 cd04126 Rab20 Rab20 subfamily. 97.9 2.9E-05 6.4E-10 71.3 7.4 72 219-308 42-114 (220)
79 cd01874 Cdc42 Cdc42 subfamily. 97.9 3.8E-05 8.2E-10 67.4 7.7 70 221-308 49-119 (175)
80 cd01892 Miro2 Miro2 subfamily. 97.9 4.6E-05 1E-09 66.4 8.2 68 221-308 54-122 (169)
81 cd04138 H_N_K_Ras_like H-Ras/N 97.9 4.2E-05 9E-10 64.7 7.6 71 221-308 49-120 (162)
82 cd04127 Rab27A Rab27a subfamil 97.9 4.4E-05 9.6E-10 66.4 7.4 71 220-307 62-133 (180)
83 cd04147 Ras_dva Ras-dva subfam 97.8 4.8E-05 1E-09 68.0 7.2 71 221-308 47-118 (198)
84 cd04144 Ras2 Ras2 subfamily. 97.8 4.5E-05 9.8E-10 67.6 6.8 70 221-307 47-119 (190)
85 cd04133 Rop_like Rop subfamily 97.8 8.2E-05 1.8E-09 65.8 8.3 90 186-308 28-119 (176)
86 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.8 5.5E-05 1.2E-09 67.2 7.2 70 220-307 52-122 (182)
87 PLN03071 GTP-binding nuclear p 97.8 4.8E-05 1E-09 69.5 7.0 70 219-307 60-130 (219)
88 cd04117 Rab15 Rab15 subfamily. 97.8 8.3E-05 1.8E-09 64.0 8.1 72 220-309 48-120 (161)
89 cd04124 RabL2 RabL2 subfamily. 97.8 7.9E-05 1.7E-09 64.0 7.5 70 219-307 47-117 (161)
90 cd00877 Ran Ran (Ras-related n 97.8 6.9E-05 1.5E-09 65.0 7.0 70 219-307 47-117 (166)
91 cd04130 Wrch_1 Wrch-1 subfamil 97.8 0.00011 2.3E-09 63.9 8.1 69 220-307 47-117 (173)
92 cd01867 Rab8_Rab10_Rab13_like 97.7 8.1E-05 1.8E-09 64.2 7.1 71 220-308 51-122 (167)
93 cd04145 M_R_Ras_like M-Ras/R-R 97.7 8.3E-05 1.8E-09 63.3 6.8 71 221-308 50-121 (164)
94 cd04103 Centaurin_gamma Centau 97.7 0.00013 2.9E-09 63.0 7.5 65 221-307 47-112 (158)
95 PLN00023 GTP-binding protein; 97.7 0.00013 2.8E-09 70.8 8.0 78 220-308 82-165 (334)
96 cd04116 Rab9 Rab9 subfamily. 97.7 0.00013 2.9E-09 62.8 7.4 75 219-307 52-127 (170)
97 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.7 0.00013 2.8E-09 67.6 7.5 70 220-307 60-130 (232)
98 cd04131 Rnd Rnd subfamily. Th 97.7 0.00015 3.3E-09 64.0 7.6 70 220-307 48-118 (178)
99 cd01862 Rab7 Rab7 subfamily. 97.7 0.00017 3.6E-09 61.9 7.7 71 220-307 48-122 (172)
100 KOG0084 GTPase Rab1/YPT1, smal 97.7 8.2E-05 1.8E-09 66.5 5.7 87 200-309 39-129 (205)
101 cd01866 Rab2 Rab2 subfamily. 97.7 0.00016 3.5E-09 62.5 7.5 70 220-307 52-122 (168)
102 cd01864 Rab19 Rab19 subfamily. 97.6 0.00018 4E-09 61.7 7.4 70 221-308 52-122 (165)
103 cd04118 Rab24 Rab24 subfamily. 97.6 0.00024 5.3E-09 62.7 8.2 69 221-308 50-119 (193)
104 cd04108 Rab36_Rab34 Rab34/Rab3 97.6 0.0002 4.2E-09 62.5 7.2 71 221-308 49-120 (170)
105 cd04128 Spg1 Spg1p. Spg1p (se 97.6 0.00026 5.6E-09 62.7 8.1 69 220-307 48-117 (182)
106 cd04102 RabL3 RabL3 (Rab-like3 97.6 0.00025 5.4E-09 64.3 7.6 37 220-256 53-89 (202)
107 cd04140 ARHI_like ARHI subfami 97.5 0.00028 6E-09 60.7 7.5 73 219-308 47-122 (165)
108 cd04109 Rab28 Rab28 subfamily. 97.5 0.00023 5.1E-09 64.5 7.2 74 220-308 49-123 (215)
109 cd04101 RabL4 RabL4 (Rab-like4 97.5 0.00023 5.1E-09 60.7 6.6 72 220-310 51-123 (164)
110 PF09439 SRPRB: Signal recogni 97.5 8.4E-05 1.8E-09 66.3 3.8 74 220-307 48-125 (181)
111 cd04146 RERG_RasL11_like RERG/ 97.5 0.00027 5.8E-09 60.6 6.8 72 220-308 46-120 (165)
112 PLN03118 Rab family protein; P 97.5 0.00026 5.5E-09 63.9 6.9 72 220-308 61-134 (211)
113 cd01868 Rab11_like Rab11-like. 97.5 0.00034 7.4E-09 59.8 6.8 69 221-307 52-121 (165)
114 smart00174 RHO Rho (Ras homolo 97.4 0.00054 1.2E-08 59.1 7.9 69 221-308 46-116 (174)
115 cd04111 Rab39 Rab39 subfamily. 97.4 0.00023 4.9E-09 64.6 5.7 71 221-308 52-123 (211)
116 cd04171 SelB SelB subfamily. 97.4 0.00042 9E-09 58.7 6.5 68 220-308 50-118 (164)
117 cd04106 Rab23_lke Rab23-like s 97.4 0.0005 1.1E-08 58.4 6.7 70 220-308 50-120 (162)
118 cd04132 Rho4_like Rho4-like su 97.4 0.00032 6.9E-09 61.5 5.5 70 221-308 49-119 (187)
119 cd04135 Tc10 TC10 subfamily. 97.3 0.00086 1.9E-08 57.8 8.0 70 221-308 48-118 (174)
120 PLN03108 Rab family protein; P 97.3 0.00069 1.5E-08 61.3 7.7 71 220-308 54-125 (210)
121 cd01870 RhoA_like RhoA-like su 97.3 0.00097 2.1E-08 57.6 8.1 72 220-309 48-120 (175)
122 cd04114 Rab30 Rab30 subfamily. 97.3 0.00079 1.7E-08 57.7 7.2 36 221-256 56-91 (169)
123 KOG0090 Signal recognition par 97.3 0.00066 1.4E-08 61.7 6.6 77 217-307 78-158 (238)
124 PLN03110 Rab GTPase; Provision 97.3 0.00087 1.9E-08 60.9 7.4 70 220-307 60-130 (216)
125 cd04148 RGK RGK subfamily. Th 97.2 0.0013 2.8E-08 60.1 8.0 71 219-308 48-120 (221)
126 cd01873 RhoBTB RhoBTB subfamil 97.2 0.0012 2.6E-08 59.2 7.5 68 220-307 65-133 (195)
127 cd01891 TypA_BipA TypA (tyrosi 97.2 0.00085 1.8E-08 59.6 6.3 69 217-307 61-130 (194)
128 cd01890 LepA LepA subfamily. 97.2 0.00068 1.5E-08 58.7 5.5 66 220-307 66-132 (179)
129 cd01887 IF2_eIF5B IF2/eIF5B (i 97.2 0.001 2.2E-08 56.7 6.4 67 219-307 48-115 (168)
130 cd04142 RRP22 RRP22 subfamily. 97.1 0.0016 3.5E-08 58.5 7.7 70 221-307 49-129 (198)
131 cd01883 EF1_alpha Eukaryotic e 97.1 0.00053 1.1E-08 62.6 3.9 51 200-256 62-112 (219)
132 PF00071 Ras: Ras family; Int 97.0 0.0014 3.1E-08 55.7 6.1 72 219-308 46-118 (162)
133 cd04168 TetM_like Tet(M)-like 96.9 0.0027 5.9E-08 58.9 7.1 82 198-307 47-129 (237)
134 PTZ00132 GTP-binding nuclear p 96.9 0.0041 9E-08 56.1 7.9 70 219-307 56-126 (215)
135 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.9 0.0035 7.6E-08 56.3 7.1 74 220-310 70-144 (221)
136 PF04670 Gtr1_RagA: Gtr1/RagA 96.8 0.0038 8.2E-08 57.9 7.4 76 218-309 45-126 (232)
137 cd01893 Miro1 Miro1 subfamily. 96.8 0.0022 4.7E-08 55.2 5.5 73 220-310 46-119 (166)
138 cd00881 GTP_translation_factor 96.8 0.003 6.6E-08 54.7 6.3 69 218-308 59-128 (189)
139 KOG0078 GTP-binding protein SE 96.7 0.0019 4.2E-08 58.3 4.7 71 219-308 59-131 (207)
140 cd04169 RF3 RF3 subfamily. Pe 96.7 0.0035 7.6E-08 59.2 6.4 52 199-256 55-106 (267)
141 TIGR00231 small_GTP small GTP- 96.7 0.0045 9.7E-08 51.0 6.3 37 221-257 50-86 (161)
142 PRK12299 obgE GTPase CgtA; Rev 96.7 0.0046 1E-07 60.4 7.1 74 219-309 204-286 (335)
143 cd01879 FeoB Ferrous iron tran 96.6 0.0061 1.3E-07 51.2 6.9 68 217-308 39-115 (158)
144 cd01881 Obg_like The Obg-like 96.6 0.0048 1E-07 52.8 6.3 79 220-309 43-135 (176)
145 PRK08118 topology modulation p 96.6 0.0011 2.5E-08 58.1 2.2 22 49-70 3-24 (167)
146 KOG0395 Ras-related GTPase [Ge 96.6 0.0086 1.9E-07 54.0 7.9 91 186-307 30-121 (196)
147 cd01886 EF-G Elongation factor 96.5 0.005 1.1E-07 58.3 6.2 81 199-307 48-129 (270)
148 PF13207 AAA_17: AAA domain; P 96.5 0.0017 3.8E-08 52.8 2.3 23 49-71 1-23 (121)
149 PRK04213 GTP-binding protein; 96.5 0.0059 1.3E-07 54.2 5.9 76 222-308 53-144 (201)
150 COG0563 Adk Adenylate kinase a 96.4 0.0017 3.6E-08 57.8 2.2 22 49-70 2-23 (178)
151 PRK07261 topology modulation p 96.4 0.0017 3.6E-08 57.1 2.2 21 49-69 2-22 (171)
152 KOG0092 GTPase Rab5/YPT51 and 96.4 0.017 3.8E-07 51.7 8.6 71 220-308 53-124 (200)
153 cd01897 NOG NOG1 is a nucleola 96.4 0.016 3.5E-07 49.4 7.9 77 217-310 43-129 (168)
154 COG2229 Predicted GTPase [Gene 96.3 0.0089 1.9E-07 53.1 5.8 70 219-309 66-136 (187)
155 COG4619 ABC-type uncharacteriz 96.2 0.0037 8.1E-08 55.3 3.1 23 49-71 31-53 (223)
156 TIGR02729 Obg_CgtA Obg family 96.2 0.011 2.5E-07 57.5 6.8 75 221-309 205-288 (329)
157 PRK10218 GTP-binding protein; 96.2 0.01 2.3E-07 62.3 6.8 69 217-307 64-133 (607)
158 cd01898 Obg Obg subfamily. Th 96.2 0.014 3.1E-07 49.7 6.6 74 221-309 48-129 (170)
159 KOG1673 Ras GTPases [General f 96.1 0.0068 1.5E-07 52.6 4.0 63 188-256 40-104 (205)
160 KOG0074 GTP-binding ADP-ribosy 96.1 0.0041 8.8E-08 53.2 2.5 32 45-76 15-52 (185)
161 PF00009 GTP_EFTU: Elongation 96.1 0.022 4.8E-07 50.3 7.4 68 218-307 67-135 (188)
162 KOG0073 GTP-binding ADP-ribosy 96.0 0.0061 1.3E-07 53.3 3.5 30 38-68 8-37 (185)
163 cd04166 CysN_ATPS CysN_ATPS su 96.0 0.016 3.6E-07 52.2 6.2 40 217-256 73-112 (208)
164 PRK06217 hypothetical protein; 96.0 0.0043 9.3E-08 54.9 2.3 22 49-70 3-24 (183)
165 PRK03003 GTP-binding protein D 95.9 0.011 2.5E-07 60.2 5.5 40 217-256 82-129 (472)
166 TIGR01393 lepA GTP-binding pro 95.9 0.019 4.1E-07 60.3 7.2 65 221-307 70-135 (595)
167 PRK00741 prfC peptide chain re 95.9 0.015 3.2E-07 60.3 6.3 81 200-308 64-145 (526)
168 KOG0093 GTPase Rab3, small G p 95.9 0.035 7.6E-07 47.9 7.4 89 198-309 49-141 (193)
169 PF00025 Arf: ADP-ribosylation 95.9 0.0053 1.1E-07 53.9 2.4 24 45-68 12-35 (175)
170 PF13555 AAA_29: P-loop contai 95.8 0.0069 1.5E-07 44.6 2.5 22 50-71 26-47 (62)
171 COG1126 GlnQ ABC-type polar am 95.8 0.0053 1.2E-07 56.2 2.2 23 49-71 30-52 (240)
172 TIGR01394 TypA_BipA GTP-bindin 95.7 0.017 3.7E-07 60.6 6.1 69 217-307 60-129 (594)
173 PF13671 AAA_33: AAA domain; P 95.7 0.0065 1.4E-07 50.8 2.3 19 50-68 2-20 (143)
174 cd01894 EngA1 EngA1 subfamily. 95.7 0.029 6.4E-07 46.8 6.3 39 218-256 42-88 (157)
175 cd01889 SelB_euk SelB subfamil 95.7 0.025 5.4E-07 50.0 6.1 38 219-256 66-103 (192)
176 PRK13351 elongation factor G; 95.7 0.019 4.1E-07 61.3 6.2 83 198-308 56-139 (687)
177 PRK05306 infB translation init 95.6 0.027 5.9E-07 60.9 7.2 69 217-307 333-402 (787)
178 PRK05433 GTP-binding protein L 95.6 0.019 4.2E-07 60.3 5.9 66 220-307 73-139 (600)
179 TIGR00231 small_GTP small GTP- 95.6 0.0073 1.6E-07 49.7 2.3 21 48-68 2-22 (161)
180 cd04154 Arl2 Arl2 subfamily. 95.6 0.0081 1.8E-07 52.0 2.5 24 45-68 12-35 (173)
181 cd04170 EF-G_bact Elongation f 95.6 0.022 4.8E-07 53.5 5.6 80 201-308 50-130 (268)
182 TIGR00487 IF-2 translation ini 95.6 0.043 9.3E-07 57.6 8.2 64 222-307 136-200 (587)
183 PRK12296 obgE GTPase CgtA; Rev 95.6 0.025 5.5E-07 58.0 6.3 41 217-257 202-249 (500)
184 cd04138 H_N_K_Ras_like H-Ras/N 95.5 0.008 1.7E-07 50.5 2.2 21 48-68 2-22 (162)
185 cd01885 EF2 EF2 (for archaea a 95.5 0.028 6.1E-07 51.7 5.9 66 220-307 72-138 (222)
186 cd00879 Sar1 Sar1 subfamily. 95.5 0.0081 1.8E-07 52.7 2.3 23 46-68 18-40 (190)
187 KOG3883 Ras family small GTPas 95.5 0.03 6.5E-07 48.6 5.6 89 187-306 39-130 (198)
188 cd04167 Snu114p Snu114p subfam 95.5 0.025 5.5E-07 51.1 5.4 36 221-256 71-106 (213)
189 KOG0098 GTPase Rab2, small G p 95.5 0.019 4.1E-07 51.3 4.4 40 217-256 51-90 (216)
190 CHL00189 infB translation init 95.5 0.029 6.2E-07 60.2 6.5 68 219-308 293-361 (742)
191 COG1136 SalX ABC-type antimicr 95.5 0.016 3.5E-07 53.5 4.1 37 49-85 33-82 (226)
192 KOG0095 GTPase Rab30, small G 95.4 0.037 8.1E-07 47.8 5.9 72 218-307 53-125 (213)
193 TIGR00483 EF-1_alpha translati 95.4 0.016 3.5E-07 58.2 4.5 49 202-256 72-120 (426)
194 cd01892 Miro2 Miro2 subfamily. 95.4 0.0085 1.8E-07 52.0 2.1 24 45-68 2-25 (169)
195 PF01926 MMR_HSR1: 50S ribosom 95.4 0.0097 2.1E-07 48.2 2.2 19 49-67 1-19 (116)
196 PRK10078 ribose 1,5-bisphospho 95.3 0.01 2.2E-07 52.6 2.2 22 49-70 4-25 (186)
197 TIGR00475 selB selenocysteine- 95.3 0.037 7.9E-07 58.0 6.7 40 217-256 46-85 (581)
198 TIGR00484 EF-G translation elo 95.3 0.031 6.8E-07 59.7 6.3 70 217-308 71-141 (689)
199 PRK00093 GTP-binding protein D 95.2 0.045 9.8E-07 54.9 6.8 40 217-256 45-92 (435)
200 PRK12297 obgE GTPase CgtA; Rev 95.2 0.047 1E-06 55.0 6.8 74 220-307 205-287 (424)
201 TIGR02322 phosphon_PhnN phosph 95.2 0.012 2.5E-07 51.6 2.2 23 49-71 3-25 (179)
202 TIGR00503 prfC peptide chain r 95.2 0.04 8.7E-07 57.1 6.5 69 217-307 76-145 (527)
203 PF00005 ABC_tran: ABC transpo 95.2 0.012 2.6E-07 48.8 2.2 23 49-71 13-35 (137)
204 PF13238 AAA_18: AAA domain; P 95.2 0.013 2.8E-07 47.6 2.3 21 50-70 1-21 (129)
205 cd01860 Rab5_related Rab5-rela 95.2 0.012 2.7E-07 49.8 2.3 21 48-68 2-22 (163)
206 PF00071 Ras: Ras family; Int 95.2 0.012 2.7E-07 49.8 2.2 19 49-67 1-19 (162)
207 COG1116 TauB ABC-type nitrate/ 95.1 0.012 2.7E-07 54.7 2.2 22 49-70 31-52 (248)
208 PRK12740 elongation factor G; 95.1 0.036 7.7E-07 59.0 5.9 81 199-307 44-125 (668)
209 PRK12317 elongation factor 1-a 95.0 0.063 1.4E-06 53.9 7.3 51 200-256 69-119 (425)
210 cd01888 eIF2_gamma eIF2-gamma 95.0 0.033 7.2E-07 50.0 4.7 36 221-256 83-118 (203)
211 cd00820 PEPCK_HprK Phosphoenol 95.0 0.015 3.1E-07 47.6 2.1 19 49-67 17-35 (107)
212 cd01862 Rab7 Rab7 subfamily. 95.0 0.014 3.1E-07 49.7 2.3 20 48-67 1-20 (172)
213 TIGR03594 GTPase_EngA ribosome 95.0 0.068 1.5E-06 53.4 7.4 69 217-307 216-296 (429)
214 cd04150 Arf1_5_like Arf1-Arf5- 95.0 0.015 3.3E-07 49.8 2.2 20 48-67 1-20 (159)
215 PTZ00133 ADP-ribosylation fact 95.0 0.015 3.2E-07 51.3 2.2 24 45-68 15-38 (182)
216 cd04124 RabL2 RabL2 subfamily. 95.0 0.016 3.4E-07 49.7 2.3 21 48-68 1-21 (161)
217 TIGR01313 therm_gnt_kin carboh 94.9 0.014 3.1E-07 50.2 2.0 21 50-70 1-21 (163)
218 COG3842 PotA ABC-type spermidi 94.9 0.015 3.2E-07 57.1 2.2 22 50-71 34-55 (352)
219 cd00071 GMPK Guanosine monopho 94.9 0.019 4.1E-07 48.6 2.6 23 50-72 2-24 (137)
220 cd04160 Arfrp1 Arfrp1 subfamil 94.9 0.016 3.4E-07 49.4 2.2 22 49-70 1-22 (167)
221 cd01864 Rab19 Rab19 subfamily. 94.9 0.016 3.6E-07 49.4 2.3 21 47-67 3-23 (165)
222 COG3839 MalK ABC-type sugar tr 94.9 0.015 3.2E-07 56.8 2.2 23 49-71 31-53 (338)
223 PRK08233 hypothetical protein; 94.9 0.016 3.5E-07 50.4 2.2 22 48-69 4-25 (182)
224 cd02019 NK Nucleoside/nucleoti 94.9 0.02 4.2E-07 42.6 2.4 21 50-70 2-22 (69)
225 COG1120 FepC ABC-type cobalami 94.9 0.016 3.4E-07 54.6 2.2 23 49-71 30-52 (258)
226 cd04135 Tc10 TC10 subfamily. 94.8 0.017 3.8E-07 49.6 2.3 21 48-68 1-21 (174)
227 cd03238 ABC_UvrA The excision 94.8 0.017 3.7E-07 51.2 2.2 20 48-67 22-41 (176)
228 cd04114 Rab30 Rab30 subfamily. 94.8 0.017 3.8E-07 49.2 2.2 23 46-68 6-28 (169)
229 COG4598 HisP ABC-type histidin 94.8 0.02 4.4E-07 51.2 2.6 23 49-71 34-56 (256)
230 TIGR03263 guanyl_kin guanylate 94.8 0.018 3.8E-07 50.3 2.2 22 49-70 3-24 (180)
231 PRK03839 putative kinase; Prov 94.8 0.018 3.8E-07 50.6 2.2 23 49-71 2-24 (180)
232 cd02021 GntK Gluconate kinase 94.8 0.019 4.2E-07 48.6 2.3 21 50-70 2-22 (150)
233 cd03283 ABC_MutS-like MutS-lik 94.8 0.018 4E-07 51.9 2.3 21 49-69 27-47 (199)
234 cd04136 Rap_like Rap-like subf 94.7 0.019 4.2E-07 48.5 2.3 21 48-68 2-22 (163)
235 cd04106 Rab23_lke Rab23-like s 94.7 0.02 4.2E-07 48.5 2.3 21 48-68 1-21 (162)
236 PF10662 PduV-EutP: Ethanolami 94.7 0.02 4.2E-07 49.2 2.1 20 49-68 3-22 (143)
237 cd01868 Rab11_like Rab11-like. 94.7 0.02 4.4E-07 48.7 2.2 22 47-68 3-24 (165)
238 PRK00300 gmk guanylate kinase; 94.7 0.02 4.3E-07 51.2 2.2 24 48-71 6-29 (205)
239 TIGR00450 mnmE_trmE_thdF tRNA 94.7 0.085 1.8E-06 53.5 7.0 40 217-256 247-294 (442)
240 PLN00223 ADP-ribosylation fact 94.6 0.02 4.4E-07 50.4 2.3 24 45-68 15-38 (181)
241 TIGR01360 aden_kin_iso1 adenyl 94.6 0.02 4.4E-07 50.0 2.2 23 48-70 4-26 (188)
242 cd04103 Centaurin_gamma Centau 94.6 0.021 4.4E-07 49.2 2.2 21 48-68 1-21 (158)
243 TIGR00235 udk uridine kinase. 94.6 0.02 4.4E-07 51.6 2.2 23 48-70 7-29 (207)
244 smart00382 AAA ATPases associa 94.6 0.022 4.7E-07 45.7 2.2 24 48-71 3-26 (148)
245 cd02023 UMPK Uridine monophosp 94.6 0.022 4.7E-07 50.8 2.3 22 50-71 2-23 (198)
246 cd04127 Rab27A Rab27a subfamil 94.6 0.021 4.6E-07 49.4 2.2 22 46-67 3-24 (180)
247 COG1125 OpuBA ABC-type proline 94.6 0.022 4.7E-07 53.5 2.4 22 50-71 30-51 (309)
248 TIGR01351 adk adenylate kinase 94.6 0.021 4.6E-07 51.6 2.3 23 49-71 1-23 (210)
249 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.022 4.8E-07 49.8 2.4 22 50-71 2-23 (183)
250 cd04107 Rab32_Rab38 Rab38/Rab3 94.6 0.021 4.6E-07 50.9 2.3 21 48-68 1-21 (201)
251 cd04117 Rab15 Rab15 subfamily. 94.6 0.022 4.7E-07 48.8 2.2 21 48-68 1-21 (161)
252 smart00178 SAR Sar1p-like memb 94.6 0.023 5E-07 50.0 2.4 24 45-68 15-38 (184)
253 PRK13949 shikimate kinase; Pro 94.6 0.022 4.7E-07 50.0 2.2 23 49-71 3-25 (169)
254 TIGR03156 GTP_HflX GTP-binding 94.6 0.08 1.7E-06 52.0 6.4 38 219-257 235-281 (351)
255 PRK14530 adenylate kinase; Pro 94.5 0.025 5.5E-07 51.2 2.7 24 48-71 4-27 (215)
256 cd01428 ADK Adenylate kinase ( 94.5 0.024 5.3E-07 49.9 2.4 23 49-71 1-23 (194)
257 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.5 0.024 5.1E-07 49.3 2.3 22 47-68 15-36 (174)
258 cd01867 Rab8_Rab10_Rab13_like 94.5 0.023 5.1E-07 48.7 2.2 22 47-68 3-24 (167)
259 cd04140 ARHI_like ARHI subfami 94.5 0.024 5.2E-07 48.6 2.3 21 48-68 2-22 (165)
260 PF13521 AAA_28: AAA domain; P 94.5 0.021 4.5E-07 49.3 1.9 22 49-70 1-22 (163)
261 PTZ00132 GTP-binding nuclear p 94.5 0.023 5E-07 51.2 2.2 22 46-67 8-29 (215)
262 cd01876 YihA_EngB The YihA (En 94.5 0.024 5.1E-07 47.6 2.2 20 49-68 1-20 (170)
263 cd04101 RabL4 RabL4 (Rab-like4 94.5 0.024 5.3E-07 48.1 2.3 20 48-67 1-20 (164)
264 smart00177 ARF ARF-like small 94.5 0.024 5.2E-07 49.4 2.2 23 46-68 12-34 (175)
265 TIGR03238 dnd_assoc_3 dnd syst 94.4 0.03 6.4E-07 57.0 3.1 35 31-65 12-50 (504)
266 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.4 0.025 5.3E-07 49.3 2.3 22 47-68 2-23 (172)
267 cd03292 ABC_FtsE_transporter F 94.4 0.024 5.2E-07 51.0 2.2 23 49-71 29-51 (214)
268 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.024 5.2E-07 51.2 2.2 23 49-71 32-54 (218)
269 cd01870 RhoA_like RhoA-like su 94.4 0.025 5.4E-07 48.6 2.2 21 48-68 2-22 (175)
270 cd03243 ABC_MutS_homologs The 94.4 0.025 5.4E-07 50.8 2.3 21 48-68 30-50 (202)
271 cd04145 M_R_Ras_like M-Ras/R-R 94.4 0.026 5.6E-07 47.8 2.3 21 47-67 2-22 (164)
272 cd03219 ABC_Mj1267_LivG_branch 94.4 0.024 5.2E-07 51.8 2.2 23 49-71 28-50 (236)
273 cd00877 Ran Ran (Ras-related n 94.4 0.025 5.5E-07 48.8 2.3 21 48-68 1-21 (166)
274 TIGR00960 3a0501s02 Type II (G 94.4 0.025 5.3E-07 51.1 2.2 23 49-71 31-53 (216)
275 cd03222 ABC_RNaseL_inhibitor T 94.4 0.024 5.1E-07 50.4 2.0 23 49-71 27-49 (177)
276 cd04116 Rab9 Rab9 subfamily. 94.4 0.026 5.6E-07 48.4 2.2 23 46-68 4-26 (170)
277 TIGR00491 aIF-2 translation in 94.4 0.066 1.4E-06 56.2 5.6 35 222-256 70-104 (590)
278 cd04163 Era Era subfamily. Er 94.4 0.027 5.8E-07 47.0 2.3 38 220-257 50-95 (168)
279 TIGR02673 FtsE cell division A 94.4 0.025 5.4E-07 50.9 2.2 23 49-71 30-52 (214)
280 cd02025 PanK Pantothenate kina 94.4 0.025 5.5E-07 51.8 2.2 22 50-71 2-23 (220)
281 cd03264 ABC_drug_resistance_li 94.4 0.026 5.6E-07 50.8 2.3 23 49-71 27-49 (211)
282 COG1117 PstB ABC-type phosphat 94.4 0.027 6E-07 51.6 2.4 22 50-71 36-57 (253)
283 cd03226 ABC_cobalt_CbiO_domain 94.3 0.025 5.5E-07 50.6 2.2 23 49-71 28-50 (205)
284 PF00004 AAA: ATPase family as 94.3 0.028 6.1E-07 45.8 2.3 21 50-70 1-21 (132)
285 cd04159 Arl10_like Arl10-like 94.3 0.027 5.8E-07 46.7 2.2 20 49-68 1-20 (159)
286 cd00227 CPT Chloramphenicol (C 94.3 0.027 5.9E-07 49.3 2.3 23 49-71 4-26 (175)
287 cd01895 EngA2 EngA2 subfamily. 94.3 0.027 6E-07 47.5 2.3 21 47-67 2-22 (174)
288 PRK05480 uridine/cytidine kina 94.3 0.026 5.7E-07 50.8 2.3 26 46-71 5-30 (209)
289 cd04149 Arf6 Arf6 subfamily. 94.3 0.027 5.7E-07 48.9 2.2 23 46-68 8-30 (168)
290 cd04151 Arl1 Arl1 subfamily. 94.3 0.027 5.9E-07 47.8 2.2 20 49-68 1-20 (158)
291 cd01893 Miro1 Miro1 subfamily. 94.3 0.027 5.9E-07 48.3 2.3 21 48-68 1-21 (166)
292 PRK12298 obgE GTPase CgtA; Rev 94.3 0.09 1.9E-06 52.5 6.2 75 221-309 207-290 (390)
293 PRK14532 adenylate kinase; Pro 94.3 0.027 5.8E-07 49.7 2.2 23 49-71 2-24 (188)
294 TIGR01166 cbiO cobalt transpor 94.3 0.027 5.9E-07 49.9 2.2 23 49-71 20-42 (190)
295 cd03259 ABC_Carb_Solutes_like 94.2 0.028 6E-07 50.7 2.2 23 49-71 28-50 (213)
296 COG2274 SunT ABC-type bacterio 94.2 0.026 5.6E-07 60.4 2.3 25 48-72 500-524 (709)
297 cd04164 trmE TrmE (MnmE, ThdF, 94.2 0.03 6.4E-07 46.7 2.2 38 218-256 46-92 (157)
298 cd03262 ABC_HisP_GlnQ_permease 94.2 0.028 6.1E-07 50.5 2.2 23 49-71 28-50 (213)
299 cd03269 ABC_putative_ATPase Th 94.2 0.029 6.2E-07 50.5 2.2 23 49-71 28-50 (210)
300 cd03265 ABC_DrrA DrrA is the A 94.2 0.028 6.2E-07 50.9 2.2 23 49-71 28-50 (220)
301 cd04156 ARLTS1 ARLTS1 subfamil 94.2 0.03 6.5E-07 47.3 2.2 20 49-68 1-20 (160)
302 TIGR02528 EutP ethanolamine ut 94.2 0.03 6.6E-07 46.5 2.2 19 49-67 2-20 (142)
303 cd03225 ABC_cobalt_CbiO_domain 94.2 0.029 6.2E-07 50.4 2.2 23 49-71 29-51 (211)
304 TIGR02315 ABC_phnC phosphonate 94.2 0.028 6.1E-07 51.6 2.2 23 49-71 30-52 (243)
305 cd03261 ABC_Org_Solvent_Resist 94.2 0.029 6.2E-07 51.4 2.2 23 49-71 28-50 (235)
306 cd03263 ABC_subfamily_A The AB 94.2 0.029 6.2E-07 50.8 2.2 23 49-71 30-52 (220)
307 cd01853 Toc34_like Toc34-like 94.2 0.057 1.2E-06 50.5 4.3 27 42-68 26-52 (249)
308 PRK15177 Vi polysaccharide exp 94.2 0.029 6.4E-07 50.9 2.2 23 49-71 15-37 (213)
309 PLN03108 Rab family protein; P 94.2 0.03 6.4E-07 50.6 2.2 22 47-68 6-27 (210)
310 PRK11058 GTPase HflX; Provisio 94.2 0.13 2.7E-06 52.0 6.9 69 222-308 246-323 (426)
311 TIGR02211 LolD_lipo_ex lipopro 94.1 0.03 6.4E-07 50.7 2.2 23 49-71 33-55 (221)
312 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.029 6.4E-07 52.6 2.2 21 49-69 32-52 (254)
313 cd03301 ABC_MalK_N The N-termi 94.1 0.03 6.5E-07 50.4 2.2 23 49-71 28-50 (213)
314 cd04132 Rho4_like Rho4-like su 94.1 0.031 6.7E-07 48.8 2.3 21 48-68 1-21 (187)
315 cd01866 Rab2 Rab2 subfamily. 94.1 0.031 6.8E-07 48.1 2.2 22 47-68 4-25 (168)
316 COG4639 Predicted kinase [Gene 94.1 0.029 6.3E-07 48.9 2.0 18 49-66 4-21 (168)
317 cd03224 ABC_TM1139_LivF_branch 94.1 0.03 6.5E-07 50.7 2.2 23 49-71 28-50 (222)
318 TIGR03594 GTPase_EngA ribosome 94.1 0.11 2.4E-06 51.8 6.5 40 217-256 43-90 (429)
319 cd03266 ABC_NatA_sodium_export 94.1 0.03 6.5E-07 50.6 2.2 23 49-71 33-55 (218)
320 cd04118 Rab24 Rab24 subfamily. 94.1 0.031 6.8E-07 49.1 2.3 21 48-68 1-21 (193)
321 COG1122 CbiO ABC-type cobalt t 94.1 0.03 6.5E-07 52.0 2.2 23 49-71 32-54 (235)
322 cd04158 ARD1 ARD1 subfamily. 94.1 0.032 7E-07 48.1 2.3 20 49-68 1-20 (169)
323 cd03293 ABC_NrtD_SsuB_transpor 94.1 0.031 6.8E-07 50.6 2.2 23 49-71 32-54 (220)
324 TIGR03598 GTPase_YsxC ribosome 94.1 0.033 7.1E-07 48.7 2.3 23 45-67 16-38 (179)
325 cd03235 ABC_Metallic_Cations A 94.1 0.031 6.8E-07 50.3 2.2 23 49-71 27-49 (213)
326 TIGR03410 urea_trans_UrtE urea 94.0 0.032 6.8E-07 50.9 2.2 24 48-71 27-50 (230)
327 PTZ00088 adenylate kinase 1; P 94.0 0.038 8.2E-07 51.1 2.7 25 47-71 6-30 (229)
328 TIGR01978 sufC FeS assembly AT 94.0 0.032 6.9E-07 51.2 2.2 22 49-70 28-49 (243)
329 cd03256 ABC_PhnC_transporter A 94.0 0.032 6.9E-07 51.2 2.2 23 49-71 29-51 (241)
330 cd03218 ABC_YhbG The ABC trans 94.0 0.032 6.9E-07 50.9 2.2 23 49-71 28-50 (232)
331 cd03258 ABC_MetN_methionine_tr 94.0 0.032 6.9E-07 51.0 2.2 23 49-71 33-55 (233)
332 TIGR01526 nadR_NMN_Atrans nico 94.0 0.039 8.4E-07 53.7 2.9 28 48-75 163-190 (325)
333 cd03274 ABC_SMC4_euk Eukaryoti 94.0 0.047 1E-06 49.7 3.3 22 50-71 28-49 (212)
334 cd03229 ABC_Class3 This class 94.0 0.033 7.2E-07 48.9 2.2 23 49-71 28-50 (178)
335 TIGR03608 L_ocin_972_ABC putat 94.0 0.033 7.1E-07 49.8 2.2 23 49-71 26-48 (206)
336 cd03214 ABC_Iron-Siderophores_ 94.0 0.033 7.2E-07 49.0 2.2 24 48-71 26-49 (180)
337 cd00009 AAA The AAA+ (ATPases 94.0 0.072 1.6E-06 43.2 4.1 24 47-70 19-42 (151)
338 PRK09270 nucleoside triphospha 94.0 0.076 1.7E-06 48.7 4.6 37 33-69 19-55 (229)
339 PRK06547 hypothetical protein; 94.0 0.054 1.2E-06 47.8 3.4 24 45-68 13-36 (172)
340 PRK02496 adk adenylate kinase; 94.0 0.041 8.9E-07 48.4 2.7 24 48-71 2-25 (184)
341 PRK11629 lolD lipoprotein tran 94.0 0.033 7.3E-07 51.0 2.2 23 49-71 37-59 (233)
342 cd03257 ABC_NikE_OppD_transpor 94.0 0.034 7.3E-07 50.5 2.2 24 48-71 32-55 (228)
343 PRK14531 adenylate kinase; Pro 93.9 0.042 9E-07 48.6 2.7 23 49-71 4-26 (183)
344 cd03234 ABCG_White The White s 93.9 0.035 7.5E-07 50.6 2.2 23 49-71 35-57 (226)
345 cd03230 ABC_DR_subfamily_A Thi 93.9 0.036 7.8E-07 48.5 2.2 23 49-71 28-50 (173)
346 cd03232 ABC_PDR_domain2 The pl 93.9 0.036 7.7E-07 49.4 2.2 21 49-69 35-55 (192)
347 cd03247 ABCC_cytochrome_bd The 93.9 0.036 7.8E-07 48.6 2.2 23 49-71 30-52 (178)
348 cd03216 ABC_Carb_Monos_I This 93.9 0.037 8E-07 48.0 2.2 23 49-71 28-50 (163)
349 cd03272 ABC_SMC3_euk Eukaryoti 93.9 0.035 7.6E-07 51.0 2.2 23 49-71 25-47 (243)
350 PRK15494 era GTPase Era; Provi 93.9 0.15 3.3E-06 49.8 6.7 38 218-256 97-143 (339)
351 cd01874 Cdc42 Cdc42 subfamily. 93.9 0.038 8.2E-07 48.3 2.3 21 48-68 2-22 (175)
352 cd01852 AIG1 AIG1 (avrRpt2-ind 93.9 0.18 3.9E-06 44.8 6.7 76 217-309 45-131 (196)
353 COG3638 ABC-type phosphate/pho 93.8 0.036 7.9E-07 51.4 2.2 23 49-71 32-54 (258)
354 PRK14242 phosphate transporter 93.8 0.036 7.8E-07 51.4 2.2 22 49-70 34-55 (253)
355 PRK13540 cytochrome c biogenes 93.8 0.037 8E-07 49.5 2.2 24 48-71 28-51 (200)
356 cd01884 EF_Tu EF-Tu subfamily. 93.8 0.16 3.4E-06 45.6 6.3 40 217-256 61-100 (195)
357 cd03296 ABC_CysA_sulfate_impor 93.8 0.036 7.9E-07 50.9 2.2 23 49-71 30-52 (239)
358 PF00485 PRK: Phosphoribulokin 93.8 0.039 8.5E-07 49.2 2.3 22 50-71 2-23 (194)
359 cd03260 ABC_PstB_phosphate_tra 93.8 0.037 8E-07 50.3 2.2 23 49-71 28-50 (227)
360 TIGR02868 CydC thiol reductant 93.8 0.037 8E-07 56.9 2.5 25 48-72 362-386 (529)
361 PRK06762 hypothetical protein; 93.8 0.04 8.8E-07 47.5 2.3 23 49-71 4-26 (166)
362 PRK11701 phnK phosphonate C-P 93.8 0.037 7.9E-07 51.6 2.2 24 48-71 33-56 (258)
363 PRK10584 putative ABC transpor 93.8 0.037 8.1E-07 50.4 2.2 24 48-71 37-60 (228)
364 PRK13543 cytochrome c biogenes 93.8 0.037 8E-07 50.1 2.2 23 49-71 39-61 (214)
365 cd03223 ABCD_peroxisomal_ALDP 93.8 0.039 8.4E-07 48.1 2.2 23 49-71 29-51 (166)
366 TIGR02770 nickel_nikD nickel i 93.8 0.037 8E-07 50.6 2.2 23 49-71 14-36 (230)
367 cd03254 ABCC_Glucan_exporter_l 93.8 0.038 8.1E-07 50.3 2.2 23 49-71 31-53 (229)
368 PTZ00369 Ras-like protein; Pro 93.8 0.04 8.6E-07 48.6 2.3 22 47-68 5-26 (189)
369 PRK12739 elongation factor G; 93.8 0.099 2.1E-06 55.9 5.7 81 200-308 58-139 (691)
370 cd03297 ABC_ModC_molybdenum_tr 93.8 0.038 8.3E-07 49.8 2.2 24 48-71 24-47 (214)
371 PF05729 NACHT: NACHT domain 93.8 0.041 8.9E-07 46.5 2.3 19 50-68 3-21 (166)
372 PRK14241 phosphate transporter 93.8 0.038 8.1E-07 51.5 2.2 23 49-71 32-54 (258)
373 cd03280 ABC_MutS2 MutS2 homolo 93.8 0.039 8.6E-07 49.5 2.3 20 49-68 30-49 (200)
374 TIGR01189 ccmA heme ABC export 93.8 0.039 8.4E-07 49.2 2.2 23 49-71 28-50 (198)
375 cd03215 ABC_Carb_Monos_II This 93.8 0.039 8.5E-07 48.6 2.2 23 49-71 28-50 (182)
376 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.8 0.04 8.6E-07 48.4 2.2 21 47-67 3-23 (183)
377 cd00878 Arf_Arl Arf (ADP-ribos 93.7 0.042 9.1E-07 46.4 2.2 20 49-68 1-20 (158)
378 cd03268 ABC_BcrA_bacitracin_re 93.7 0.041 8.8E-07 49.4 2.2 23 49-71 28-50 (208)
379 PRK11264 putative amino-acid A 93.7 0.04 8.7E-07 50.9 2.2 23 49-71 31-53 (250)
380 cd03295 ABC_OpuCA_Osmoprotecti 93.7 0.04 8.7E-07 50.7 2.2 23 49-71 29-51 (242)
381 PRK11248 tauB taurine transpor 93.7 0.04 8.6E-07 51.4 2.2 23 49-71 29-51 (255)
382 PRK00279 adk adenylate kinase; 93.7 0.048 1E-06 49.4 2.7 23 49-71 2-24 (215)
383 PRK13541 cytochrome c biogenes 93.7 0.042 9E-07 48.9 2.2 23 49-71 28-50 (195)
384 cd03298 ABC_ThiQ_thiamine_tran 93.6 0.042 9E-07 49.4 2.2 24 48-71 25-48 (211)
385 cd01130 VirB11-like_ATPase Typ 93.6 0.085 1.8E-06 46.8 4.2 24 47-70 25-48 (186)
386 PRK10908 cell division protein 93.6 0.042 9.1E-07 49.9 2.2 24 48-71 29-52 (222)
387 cd04161 Arl2l1_Arl13_like Arl2 93.6 0.044 9.5E-07 47.3 2.3 20 49-68 1-20 (167)
388 cd03252 ABCC_Hemolysin The ABC 93.6 0.041 9E-07 50.4 2.2 23 49-71 30-52 (237)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.044 9.6E-07 46.6 2.2 23 49-71 28-50 (144)
390 PRK13539 cytochrome c biogenes 93.6 0.043 9.2E-07 49.4 2.2 23 49-71 30-52 (207)
391 COG4615 PvdE ABC-type sideroph 93.6 0.053 1.1E-06 53.9 3.0 39 49-87 351-399 (546)
392 PRK09825 idnK D-gluconate kina 93.6 0.043 9.4E-07 48.5 2.2 22 49-70 5-26 (176)
393 TIGR01184 ntrCD nitrate transp 93.6 0.042 9.2E-07 50.3 2.2 23 49-71 13-35 (230)
394 cd04109 Rab28 Rab28 subfamily. 93.6 0.043 9.3E-07 49.6 2.2 21 48-68 1-21 (215)
395 cd04146 RERG_RasL11_like RERG/ 93.6 0.044 9.6E-07 46.7 2.2 19 49-67 1-19 (165)
396 COG1118 CysA ABC-type sulfate/ 93.6 0.042 9E-07 52.9 2.2 22 49-70 30-51 (345)
397 PRK10771 thiQ thiamine transpo 93.6 0.042 9.2E-07 50.2 2.2 24 48-71 26-49 (232)
398 PRK11247 ssuB aliphatic sulfon 93.6 0.042 9.2E-07 51.5 2.2 23 49-71 40-62 (257)
399 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.042 9.2E-07 51.1 2.2 23 49-71 27-49 (246)
400 PRK05291 trmE tRNA modificatio 93.6 0.15 3.3E-06 51.7 6.4 75 203-308 251-335 (449)
401 PRK10895 lipopolysaccharide AB 93.6 0.043 9.3E-07 50.5 2.2 23 49-71 31-53 (241)
402 cd04157 Arl6 Arl6 subfamily. 93.6 0.046 9.9E-07 46.1 2.2 20 49-68 1-20 (162)
403 PRK15056 manganese/iron transp 93.6 0.042 9.2E-07 51.7 2.2 23 49-71 35-57 (272)
404 cd03253 ABCC_ATM1_transporter 93.6 0.043 9.3E-07 50.2 2.2 23 49-71 29-51 (236)
405 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.044 9.4E-07 50.3 2.2 23 49-71 29-51 (236)
406 cd03246 ABCC_Protease_Secretio 93.6 0.045 9.8E-07 47.8 2.2 23 49-71 30-52 (173)
407 TIGR01277 thiQ thiamine ABC tr 93.6 0.044 9.6E-07 49.4 2.2 24 48-71 25-48 (213)
408 cd00464 SK Shikimate kinase (S 93.6 0.049 1.1E-06 46.0 2.3 22 50-71 2-23 (154)
409 PRK14738 gmk guanylate kinase; 93.6 0.046 9.9E-07 49.4 2.3 21 48-68 14-34 (206)
410 PRK13638 cbiO cobalt transport 93.5 0.043 9.3E-07 51.6 2.2 23 49-71 29-51 (271)
411 PRK11124 artP arginine transpo 93.5 0.044 9.6E-07 50.4 2.2 23 49-71 30-52 (242)
412 PLN03046 D-glycerate 3-kinase; 93.5 0.089 1.9E-06 52.9 4.4 25 47-71 212-236 (460)
413 PRK14250 phosphate ABC transpo 93.5 0.044 9.6E-07 50.5 2.2 23 49-71 31-53 (241)
414 cd04176 Rap2 Rap2 subgroup. T 93.5 0.047 1E-06 46.3 2.2 20 48-67 2-21 (163)
415 COG4559 ABC-type hemin transpo 93.5 0.045 9.6E-07 50.3 2.1 58 49-106 29-99 (259)
416 cd04130 Wrch_1 Wrch-1 subfamil 93.5 0.048 1E-06 47.1 2.3 20 48-67 1-20 (173)
417 PRK10247 putative ABC transpor 93.5 0.046 9.9E-07 49.9 2.2 23 49-71 35-57 (225)
418 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.5 0.045 9.7E-07 50.2 2.2 24 48-71 30-53 (238)
419 cd03251 ABCC_MsbA MsbA is an e 93.5 0.045 9.8E-07 49.9 2.2 23 49-71 30-52 (234)
420 cd03228 ABCC_MRP_Like The MRP 93.5 0.047 1E-06 47.6 2.2 23 49-71 30-52 (171)
421 cd04108 Rab36_Rab34 Rab34/Rab3 93.5 0.047 1E-06 47.4 2.2 20 49-68 2-21 (170)
422 TIGR02324 CP_lyasePhnL phospho 93.5 0.046 1E-06 49.6 2.2 23 49-71 36-58 (224)
423 PRK14245 phosphate ABC transpo 93.5 0.046 9.9E-07 50.6 2.2 21 49-69 31-51 (250)
424 cd03267 ABC_NatA_like Similar 93.5 0.046 1E-06 50.3 2.2 24 48-71 48-71 (236)
425 cd03245 ABCC_bacteriocin_expor 93.4 0.047 1E-06 49.4 2.2 23 49-71 32-54 (220)
426 TIGR02323 CP_lyasePhnK phospho 93.4 0.047 1E-06 50.6 2.2 24 48-71 30-53 (253)
427 PRK09518 bifunctional cytidyla 93.4 0.16 3.5E-06 54.5 6.6 40 217-256 319-366 (712)
428 PRK11300 livG leucine/isoleuci 93.4 0.046 1E-06 50.6 2.2 23 49-71 33-55 (255)
429 PRK14527 adenylate kinase; Pro 93.4 0.049 1.1E-06 48.4 2.2 24 48-71 7-30 (191)
430 smart00534 MUTSac ATPase domai 93.4 0.055 1.2E-06 48.0 2.5 21 50-70 2-22 (185)
431 cd03281 ABC_MSH5_euk MutS5 hom 93.4 0.055 1.2E-06 49.3 2.6 23 48-70 30-52 (213)
432 TIGR00437 feoB ferrous iron tr 93.4 0.15 3.3E-06 53.6 6.2 67 217-307 37-112 (591)
433 TIGR00972 3a0107s01c2 phosphat 93.4 0.048 1E-06 50.4 2.2 23 49-71 29-51 (247)
434 PRK13538 cytochrome c biogenes 93.4 0.049 1.1E-06 48.8 2.2 23 49-71 29-51 (204)
435 PRK11614 livF leucine/isoleuci 93.4 0.049 1.1E-06 50.0 2.2 23 49-71 33-55 (237)
436 PLN03071 GTP-binding nuclear p 93.4 0.05 1.1E-06 49.5 2.3 22 46-67 12-33 (219)
437 PRK05057 aroK shikimate kinase 93.4 0.051 1.1E-06 47.8 2.2 23 48-70 5-27 (172)
438 PRK11831 putative ABC transpor 93.4 0.048 1.1E-06 51.2 2.2 23 49-71 35-57 (269)
439 COG3840 ThiQ ABC-type thiamine 93.4 0.051 1.1E-06 48.8 2.2 21 49-69 27-47 (231)
440 PRK14248 phosphate ABC transpo 93.3 0.049 1.1E-06 51.0 2.2 22 49-70 49-70 (268)
441 cd03233 ABC_PDR_domain1 The pl 93.3 0.05 1.1E-06 48.9 2.2 24 49-72 35-58 (202)
442 cd04104 p47_IIGP_like p47 (47- 93.3 0.051 1.1E-06 48.6 2.2 21 48-68 2-22 (197)
443 TIGR02769 nickel_nikE nickel i 93.3 0.05 1.1E-06 51.0 2.2 24 48-71 38-61 (265)
444 cd03279 ABC_sbcCD SbcCD and ot 93.3 0.05 1.1E-06 49.3 2.1 23 49-71 30-53 (213)
445 cd03236 ABC_RNaseL_inhibitor_d 93.3 0.052 1.1E-06 50.9 2.3 25 48-72 27-51 (255)
446 PRK09544 znuC high-affinity zi 93.3 0.05 1.1E-06 50.7 2.2 22 49-70 32-53 (251)
447 PRK14240 phosphate transporter 93.3 0.05 1.1E-06 50.3 2.2 22 49-70 31-52 (250)
448 TIGR03005 ectoine_ehuA ectoine 93.3 0.05 1.1E-06 50.4 2.2 23 49-71 28-50 (252)
449 PRK14247 phosphate ABC transpo 93.3 0.051 1.1E-06 50.3 2.2 23 49-71 31-53 (250)
450 PF09439 SRPRB: Signal recogni 93.3 0.056 1.2E-06 48.3 2.4 21 48-68 4-24 (181)
451 PRK00131 aroK shikimate kinase 93.3 0.057 1.2E-06 46.4 2.4 24 48-71 5-28 (175)
452 PRK09493 glnQ glutamine ABC tr 93.3 0.052 1.1E-06 49.9 2.2 23 49-71 29-51 (240)
453 PRK10744 pstB phosphate transp 93.3 0.051 1.1E-06 50.7 2.2 24 48-71 40-63 (260)
454 TIGR00554 panK_bact pantothena 93.3 0.056 1.2E-06 51.8 2.5 26 46-71 61-86 (290)
455 PRK14737 gmk guanylate kinase; 93.3 0.053 1.2E-06 48.4 2.2 20 49-68 6-25 (186)
456 PRK11176 lipid transporter ATP 93.3 0.053 1.1E-06 56.4 2.5 25 48-72 370-394 (582)
457 PRK14267 phosphate ABC transpo 93.3 0.051 1.1E-06 50.3 2.2 23 49-71 32-54 (253)
458 PRK14274 phosphate ABC transpo 93.3 0.052 1.1E-06 50.6 2.2 23 49-71 40-62 (259)
459 PRK13645 cbiO cobalt transport 93.2 0.051 1.1E-06 51.6 2.2 23 49-71 39-61 (289)
460 cd02028 UMPK_like Uridine mono 93.2 0.057 1.2E-06 47.8 2.3 21 50-70 2-22 (179)
461 COG2884 FtsE Predicted ATPase 93.2 0.055 1.2E-06 48.8 2.2 22 49-70 30-51 (223)
462 PRK00454 engB GTP-binding prot 93.2 0.056 1.2E-06 47.4 2.3 23 45-67 22-44 (196)
463 PRK10575 iron-hydroxamate tran 93.2 0.052 1.1E-06 50.8 2.2 24 48-71 38-61 (265)
464 TIGR01288 nodI ATP-binding ABC 93.2 0.052 1.1E-06 52.0 2.2 23 49-71 32-54 (303)
465 PRK14251 phosphate ABC transpo 93.2 0.053 1.2E-06 50.1 2.2 23 49-71 32-54 (251)
466 cd00267 ABC_ATPase ABC (ATP-bi 93.2 0.057 1.2E-06 46.2 2.2 24 48-71 26-49 (157)
467 PRK14239 phosphate transporter 93.2 0.054 1.2E-06 50.1 2.2 22 49-70 33-54 (252)
468 TIGR01188 drrA daunorubicin re 93.2 0.053 1.2E-06 51.9 2.2 23 49-71 21-43 (302)
469 cd03290 ABCC_SUR1_N The SUR do 93.2 0.055 1.2E-06 48.9 2.2 24 48-71 28-51 (218)
470 cd03213 ABCG_EPDR ABCG transpo 93.2 0.056 1.2E-06 48.2 2.2 24 48-71 36-59 (194)
471 cd03217 ABC_FeS_Assembly ABC-t 93.2 0.056 1.2E-06 48.4 2.2 23 48-70 27-49 (200)
472 cd04111 Rab39 Rab39 subfamily. 93.2 0.057 1.2E-06 48.8 2.3 22 47-68 2-23 (211)
473 PRK13651 cobalt transporter AT 93.2 0.054 1.2E-06 52.1 2.2 23 49-71 35-57 (305)
474 PRK14528 adenylate kinase; Pro 93.2 0.067 1.5E-06 47.5 2.7 23 49-71 3-25 (186)
475 PRK09580 sufC cysteine desulfu 93.1 0.055 1.2E-06 49.8 2.2 23 48-70 28-50 (248)
476 PTZ00301 uridine kinase; Provi 93.1 0.056 1.2E-06 49.3 2.2 20 48-67 4-23 (210)
477 KOG0057 Mitochondrial Fe/S clu 93.1 0.059 1.3E-06 55.4 2.5 25 48-72 379-403 (591)
478 TIGR03771 anch_rpt_ABC anchore 93.1 0.056 1.2E-06 49.3 2.2 23 49-71 8-30 (223)
479 cd03248 ABCC_TAP TAP, the Tran 93.1 0.056 1.2E-06 49.1 2.2 24 48-71 41-64 (226)
480 PRK14273 phosphate ABC transpo 93.1 0.056 1.2E-06 50.2 2.2 23 49-71 35-57 (254)
481 cd03294 ABC_Pro_Gly_Bertaine T 93.1 0.056 1.2E-06 50.8 2.2 23 49-71 52-74 (269)
482 PRK13695 putative NTPase; Prov 93.1 0.059 1.3E-06 47.1 2.3 20 48-67 1-20 (174)
483 cd01875 RhoG RhoG subfamily. 93.1 0.06 1.3E-06 47.7 2.3 22 47-68 3-24 (191)
484 PRK14262 phosphate ABC transpo 93.1 0.056 1.2E-06 49.9 2.2 23 49-71 31-53 (250)
485 PF13173 AAA_14: AAA domain 93.1 0.062 1.3E-06 44.6 2.2 20 49-68 4-23 (128)
486 PRK13649 cbiO cobalt transport 93.1 0.056 1.2E-06 51.0 2.2 23 49-71 35-57 (280)
487 TIGR03740 galliderm_ABC gallid 93.1 0.058 1.3E-06 49.0 2.2 23 49-71 28-50 (223)
488 PRK10418 nikD nickel transport 93.1 0.057 1.2E-06 50.2 2.2 23 49-71 31-53 (254)
489 PRK14261 phosphate ABC transpo 93.1 0.057 1.2E-06 50.1 2.2 22 49-70 34-55 (253)
490 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.1 0.058 1.3E-06 49.2 2.2 23 49-71 50-72 (224)
491 cd01120 RecA-like_NTPases RecA 93.1 0.06 1.3E-06 45.1 2.1 19 50-68 2-20 (165)
492 PRK14256 phosphate ABC transpo 93.1 0.058 1.3E-06 50.0 2.2 23 49-71 32-54 (252)
493 PHA02530 pseT polynucleotide k 93.1 0.057 1.2E-06 51.2 2.2 23 49-71 4-26 (300)
494 PRK14268 phosphate ABC transpo 93.1 0.058 1.2E-06 50.3 2.2 23 49-71 40-62 (258)
495 cd01131 PilT Pilus retraction 93.1 0.059 1.3E-06 48.4 2.2 18 50-67 4-21 (198)
496 cd03244 ABCC_MRP_domain2 Domai 93.1 0.059 1.3E-06 48.7 2.2 23 49-71 32-54 (221)
497 PRK13648 cbiO cobalt transport 93.0 0.058 1.3E-06 50.6 2.2 23 49-71 37-59 (269)
498 PRK13646 cbiO cobalt transport 93.0 0.058 1.2E-06 51.2 2.2 23 49-71 35-57 (286)
499 CHL00131 ycf16 sulfate ABC tra 93.0 0.058 1.3E-06 49.9 2.2 23 48-70 34-56 (252)
500 PRK14235 phosphate transporter 93.0 0.059 1.3E-06 50.6 2.2 23 49-71 47-69 (267)
No 1
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-86 Score=631.98 Aligned_cols=301 Identities=44% Similarity=0.695 Sum_probs=277.8
Q ss_pred ccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 019426 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (341)
Q Consensus 9 mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~ 88 (341)
||++|| .+.+++.++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+.+|+..|+++|+
T Consensus 1 MG~~~s------~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~ 74 (354)
T KOG0082|consen 1 MGCICS------AEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIY 74 (354)
T ss_pred CCcccC------chhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 898887 34566778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCC-CCCCcHHHHHHHHHhcCChHHHHHHHcCCCC
Q 019426 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD-YPRLTKELAEDIETLWADPAIQETYAHGNEL 167 (341)
Q Consensus 89 ~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~ 167 (341)
.|+++++..|++||..++++.. .+..+..+..+........ .+++++|+++.|.+||+||+||+||+|+++|
T Consensus 75 ~N~~~~~~~ll~a~~~~~i~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~ 147 (354)
T KOG0082|consen 75 SNIIQSLKALLRAMETLGINLD-------DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREF 147 (354)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcC
Confidence 9999999999999998886542 2334444444433322222 2679999999999999999999999999999
Q ss_pred CCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccE
Q 019426 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 247 (341)
Q Consensus 168 ~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~ 247 (341)
+|+|++.|||++++||+.|+|+||++||||+|.||+||.|+.| .+++.+|+++||||||+||+||+|||++|+|
T Consensus 148 ~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F------~~k~~~f~~~DvGGQRseRrKWihcFe~v~a 221 (354)
T KOG0082|consen 148 QLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVEF------TIKGLKFRMFDVGGQRSERKKWIHCFEDVTA 221 (354)
T ss_pred CCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEEE------EeCCCceEEEeCCCcHHHhhhHHHhhcCCCE
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeec
Q 019426 248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFW 326 (341)
Q Consensus 248 IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~ 326 (341)
|||||++|+|||++.||+.+|||+||+.||++|||++||.+ ++||||+| .|+| ++|+ ..+++++||
T Consensus 222 viF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~-------tsiiLFLNK~DLF-----eEKi-~~~~~~~~F 288 (354)
T KOG0082|consen 222 VIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN-------TSIILFLNKKDLF-----EEKI-KKVPLTDCF 288 (354)
T ss_pred EEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc-------CcEEEEeecHHHH-----HHHh-ccCchhhhC
Confidence 99999999999999999999999999999999999999999 89999999 9999 9999 899999999
Q ss_pred ccccc-chhhhhhhcC
Q 019426 327 YSFAE-NFLHAVSKQI 341 (341)
Q Consensus 327 ~~~~~-~~~~~~~~~~ 341 (341)
|+|.| |+++++.+||
T Consensus 289 pdy~G~~~~~~a~~yI 304 (354)
T KOG0082|consen 289 PDYKGVNTYEEAAKYI 304 (354)
T ss_pred cCCCCCCChHHHHHHH
Confidence 99999 9999999886
No 2
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=3e-81 Score=561.53 Aligned_cols=302 Identities=33% Similarity=0.587 Sum_probs=279.4
Q ss_pred hhccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHH
Q 019426 7 ENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISV 86 (341)
Q Consensus 7 ~~mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~ 86 (341)
+-+++|| .+++++++++.+++|+|||..+++..++++|+||||+||||||||+||||++|+.||++++++.|.+.
T Consensus 4 ~~~~~cc-----lsee~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~l 78 (359)
T KOG0085|consen 4 LTWMCCC-----LSEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKL 78 (359)
T ss_pred hhhhHhh-----CcHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHH
Confidence 3455554 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCC
Q 019426 87 IHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNE 166 (341)
Q Consensus 87 I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~ 166 (341)
||+|++.+|+++++||+.|.+.. ..++|++++..+.+.+... ...+...++.+|+.||.|||||+||+||++
T Consensus 79 vyqnif~amqaMIrAMetL~I~y-------~~e~nk~~A~~vrevd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRRE 150 (359)
T KOG0085|consen 79 VYQNIFTAMQAMIRAMETLKIPY-------KREENKAHASLVREVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRRE 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhHhhhcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999999999999999864 3578888888887764432 235778999999999999999999999999
Q ss_pred CCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCcc
Q 019426 167 LQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246 (341)
Q Consensus 167 ~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~ 246 (341)
++|.|++.|+|.+++||+.|+|.||.+|+||.|+||+||.|+.| ....+.|+++|||||+++|+||+|||++|+
T Consensus 151 yqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf------dl~~iifrmvDvGGqrserrKWIHCFEnvt 224 (359)
T KOG0085|consen 151 YQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF------DLQKIIFRMVDVGGQRSERRKWIHCFENVT 224 (359)
T ss_pred hhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc------chhhheeeeeecCCchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 788999999999999999999999999999
Q ss_pred EEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeee
Q 019426 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIF 325 (341)
Q Consensus 247 ~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~ 325 (341)
+|+|+|+||+|||+|.|..+.|||+||+.+|..|+..|||.+ .++|+|+| .|+| +.|+ .-.-+-+|
T Consensus 225 si~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~n-------ssVIlFLNKkDlL-----EekI-~ySHl~~Y 291 (359)
T KOG0085|consen 225 SIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN-------SSVILFLNKKDLL-----EEKI-LYSHLADY 291 (359)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccC-------CceEEEechhhhh-----hhhh-hHHHHHHh
Confidence 999999999999999999999999999999999999999999 88999999 9999 8888 45558999
Q ss_pred cccccc--chhhhhhhc
Q 019426 326 WYSFAE--NFLHAVSKQ 340 (341)
Q Consensus 326 ~~~~~~--~~~~~~~~~ 340 (341)
||||.| .|..++-..
T Consensus 292 FPe~~GP~qDa~AAreF 308 (359)
T KOG0085|consen 292 FPEFDGPKQDAQAAREF 308 (359)
T ss_pred CcccCCCcccHHHHHHH
Confidence 999999 888877543
No 3
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=1.9e-74 Score=560.07 Aligned_cols=288 Identities=41% Similarity=0.630 Sum_probs=264.1
Q ss_pred HhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019426 28 AQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ 107 (341)
Q Consensus 28 ~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~ 107 (341)
++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+.+|+..|+++|+.|++++|+.|+++|+.+++
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i 81 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI 81 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccCCcchHHHHHHHhhccC--CCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccC
Q 019426 108 NETDSMKFVVSSENKEIGEKLSEIGG--RLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSD 185 (341)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~ 185 (341)
+.. .+++...+..+..... ......+++++++.|..||+||+||.+|.++++|+|+|++.|||++++||++
T Consensus 82 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~ 154 (342)
T smart00275 82 PFE-------DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD 154 (342)
T ss_pred CCC-------ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC
Confidence 532 2333344444444321 1111357899999999999999999999999999999999999999999999
Q ss_pred CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426 186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 265 (341)
Q Consensus 186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~ 265 (341)
|+|+||++||||+|.||+|+++..| .+++.++++||||||+++|+||.|||+++++||||||+|+|||+++||+
T Consensus 155 ~~y~Pt~~Dil~~r~~T~Gi~~~~f------~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~ 228 (342)
T smart00275 155 PDYVPTEQDILRSRVPTTGIQETAF------IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228 (342)
T ss_pred CCCCCCHHHhhheeCCccceEEEEE------EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC
Confidence 9999999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhhhcC
Q 019426 266 QKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVSKQI 341 (341)
Q Consensus 266 ~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 341 (341)
.+|||+||+.+|+++|++++|++ .||+||+| +|+| ..|+..+ +|+.|||+|+| |+++++.+||
T Consensus 229 ~~nrl~esl~~f~~l~~~~~~~~-------~piil~~NK~D~~-----~~Kl~~~-~l~~~fp~y~g~~~~~~~~~yi 293 (342)
T smart00275 229 STNRMQESLNLFESICNSRWFAN-------TSIILFLNKIDLF-----EEKIKKV-PLVDYFPDYKGPNDYEAAAKFI 293 (342)
T ss_pred cchHHHHHHHHHHHHHcCccccC-------CcEEEEEecHHhH-----HHHhCCC-chhccCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999998 89999999 9999 8899665 99999999999 9999999886
No 4
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=4.5e-73 Score=559.78 Aligned_cols=302 Identities=42% Similarity=0.704 Sum_probs=259.0
Q ss_pred hhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019426 22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101 (341)
Q Consensus 22 ~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a 101 (341)
+.+++..++++|+++++++++..++.+||||||+||||||||+||||++|.++|+++|+..|+++|+.|++++|+.|+++
T Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~ 112 (389)
T PF00503_consen 33 EEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEA 112 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccCCcchHHHHHHHhhccCCCCCC---------CCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcc
Q 019426 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP---------RLTKELAEDIETLWADPAIQETYAHGNELQLPDC 172 (341)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~ 172 (341)
+..+++..........++++......+.......+.. .+++++++.|..||+||+||++|+++++++++|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~ 192 (389)
T PF00503_consen 113 LEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDN 192 (389)
T ss_dssp HHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TT
T ss_pred HHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhccccccc
Confidence 9988865321111111345555566555543322211 3788999999999999999999999899999999
Q ss_pred hhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCccc-CCceeEEEecCCccccccccccccCCccEEEEE
Q 019426 173 ANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 251 (341)
Q Consensus 173 ~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~-~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFv 251 (341)
+.|||++++||++++|.||++||||+|.+|+||.|+.| .+ ++..|+++||||||++|+||+|||++|++||||
T Consensus 193 ~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f------~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~ 266 (389)
T PF00503_consen 193 AKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDF------NFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFV 266 (389)
T ss_dssp HHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEE------EE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEE
T ss_pred HHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEE------EeecccccceecCCCCchhhhhHHHHhccccEEEEe
Confidence 99999999999999999999999999999999999999 78 899999999999999999999999999999999
Q ss_pred eeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeeccccc
Q 019426 252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFA 330 (341)
Q Consensus 252 vslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (341)
||||+|||+++||+.+|||+||+.+|++||+++||++ .||+||+| +|+| ++|+..+.++++|||+|+
T Consensus 267 vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~-------~~iil~lnK~D~f-----~~Kl~~~~~l~~~fp~y~ 334 (389)
T PF00503_consen 267 VSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN-------TPIILFLNKIDLF-----EEKLKKGPKLSKYFPDYT 334 (389)
T ss_dssp EEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT-------SEEEEEEE-HHHH-----HHHTTTSSCGGGTSTTGG
T ss_pred ecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc-------CceEEeeecHHHH-----HHHccCCCchHhhCCCCC
Confidence 9999999999999999999999999999999999998 89999998 9999 999988888999999997
Q ss_pred c---chhhhhhhcC
Q 019426 331 E---NFLHAVSKQI 341 (341)
Q Consensus 331 ~---~~~~~~~~~~ 341 (341)
| |+++++.+||
T Consensus 335 g~~~~~~~~~~~~i 348 (389)
T PF00503_consen 335 GDRPNDVDSAIKFI 348 (389)
T ss_dssp SH-TSSHHHHHHHH
T ss_pred CCcccCHHHHHHHH
Confidence 7 7999998885
No 5
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=1e-73 Score=520.00 Aligned_cols=299 Identities=32% Similarity=0.556 Sum_probs=272.5
Q ss_pred ccccccC-CCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHH
Q 019426 9 MGLLCSK-NRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVI 87 (341)
Q Consensus 9 mg~~~~~-~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I 87 (341)
||++.+. ......+.++++.+|+.|++||..++...+...|+||||+|||||||++||||++|-+||+++|++...+-|
T Consensus 1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI 80 (379)
T KOG0099|consen 1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI 80 (379)
T ss_pred CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence 6655433 222445667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCC
Q 019426 88 HANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNEL 167 (341)
Q Consensus 88 ~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~ 167 (341)
++|+-++|.+|+.+|..+..+ ....+++++-.+++|.++....+ ..+++|+.+.+..||+|.||+.||+|++||
T Consensus 81 ~~Ni~eai~~iv~aM~~l~p~-----v~l~~~~~~~~~dYIls~~~~~~-~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEy 154 (379)
T KOG0099|consen 81 KNNIKEAILTIVGAMSNLVPP-----VELANPENQFRVDYILSVMNSPD-FDYPPEFYDHVKTLWEDEGVRACYERSNEY 154 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCC-----cccCCcccchhHHHHHhcCCCCc-ccCCHHHHHHHHHHhhhhhHHHHHhccCcc
Confidence 999999999999999987732 22457788888899988765432 367899999999999999999999999999
Q ss_pred CCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccE
Q 019426 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 247 (341)
Q Consensus 168 ~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~ 247 (341)
+|.|+|.|||+++++|.+++|+|+++||||||+-|+||.|++| ++...+|+|+||||||.||+||++||.+|+|
T Consensus 155 qLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~F------qVdkv~FhMfDVGGQRDeRrKWIQcFndvtA 228 (379)
T KOG0099|consen 155 QLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA 228 (379)
T ss_pred chhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEE------eccccceeeeccCCchhhhhhHHHHhcCccE
Confidence 9999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccc-cceeee
Q 019426 248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFF-LKKKIF 325 (341)
Q Consensus 248 IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~-~~~~~~ 325 (341)
||||++.|.||+++.||+++|||+||+.||++|.|++|++. ..+|||+| -|+| ..|+..| .++.+|
T Consensus 229 iifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t-------isvIlFLNKqDll-----aeKi~Agk~~i~dy 296 (379)
T KOG0099|consen 229 IIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT-------ISVILFLNKQDLL-----AEKILAGKSKIEDY 296 (379)
T ss_pred EEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh-------hheeEEecHHHHH-----HHHHHcchhhHHHh
Confidence 99999999999999999999999999999999999999987 88999999 9999 6676555 559999
Q ss_pred cccccc
Q 019426 326 WYSFAE 331 (341)
Q Consensus 326 ~~~~~~ 331 (341)
||||++
T Consensus 297 FpEf~~ 302 (379)
T KOG0099|consen 297 FPEFAR 302 (379)
T ss_pred ChHHhc
Confidence 999998
No 6
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=4.3e-70 Score=524.99 Aligned_cols=268 Identities=45% Similarity=0.702 Sum_probs=248.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (341)
+|+||||+|||||||++||||++|.+||+++|+..|+.+|+.|++++|+.|+++++.++++. .++++...+..
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~-------~~~~~~~~~~~ 73 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPF-------GDPENEKDAKK 73 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999988653 24556566666
Q ss_pred HhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEE
Q 019426 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVE 207 (341)
Q Consensus 128 i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e 207 (341)
+...........+++++++.|..||+||+||++|.++++++++|++.|||++++||++|+|.||++|||++|.||+|+.+
T Consensus 74 i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~ 153 (317)
T cd00066 74 ILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVE 153 (317)
T ss_pred HHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeE
Confidence 66554332335689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426 208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (341)
Q Consensus 208 ~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~ 287 (341)
+.| .+++.++++||||||+++|+||.|||+++++||||||+|+|||.+.||+.+|||+||+.+|++++++++|+
T Consensus 154 ~~f------~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 154 TKF------TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred EEE------EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 999 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhcC
Q 019426 288 VFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQI 341 (341)
Q Consensus 288 ~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 341 (341)
+ .||+||+| +|+| ..|+..+ +|++|||+|+| |+++++.+||
T Consensus 228 ~-------~pill~~NK~D~f-----~~ki~~~-~l~~~fp~y~g~~~~~~~~~~~i 271 (317)
T cd00066 228 N-------TSIILFLNKKDLF-----EEKIKKS-PLTDYFPDYTGPPNDYEEAAKFI 271 (317)
T ss_pred C-------CCEEEEccChHHH-----HHhhcCC-CccccCCCCCCCCCCHHHHHHHH
Confidence 8 89999999 9999 8888554 99999999999 8999998886
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.2e-16 Score=134.25 Aligned_cols=88 Identities=19% Similarity=0.378 Sum_probs=82.2
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||+|++.... .+++..|.+||||||..-|+.|.|||.+..++|||+|+++ .|||+||++.+++
T Consensus 46 ipTvGFnvetV------tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ 109 (180)
T KOG0071|consen 46 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHR 109 (180)
T ss_pred ccccceeEEEE------EeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHH
Confidence 58999998887 7899999999999999999999999999999999999998 6999999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
++++|.+.. .++++++| .|+...+
T Consensus 110 ii~~~em~~-------~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 110 IINDREMRD-------AIILILANKQDLPDAM 134 (180)
T ss_pred HhCCHhhhc-------ceEEEEecCccccccc
Confidence 999999988 89999999 8887555
No 8
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9.3e-16 Score=134.48 Aligned_cols=88 Identities=25% Similarity=0.434 Sum_probs=82.2
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||.|++...+ .+++++|.+||||||.+.|.-|.|||.+.++||||||++| ..||.||++.+..
T Consensus 46 vPTiGfnVE~v------~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~eak~eL~~ 109 (181)
T KOG0070|consen 46 VPTIGFNVETV------EYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEAKEELHR 109 (181)
T ss_pred CCccccceeEE------EEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHHHHHHHH
Confidence 68999999999 7899999999999999999999999999999999999998 6899999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
+++++.+.+ +|+++|+| .|+...+
T Consensus 110 ~l~~~~l~~-------~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 110 MLAEPELRN-------APLLVFANKQDLPGAL 134 (181)
T ss_pred HHcCcccCC-------ceEEEEechhhccccC
Confidence 999999887 99999999 8876444
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.50 E-value=9.2e-14 Score=122.61 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=81.0
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||.|++...+ .+.+.++.+||+|||...|..|.+||.++++||||||.++ .+|+.||++.|..
T Consensus 43 ~pT~g~~~~~i------~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ 106 (175)
T PF00025_consen 43 IPTIGFNIEEI------KYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKE 106 (175)
T ss_dssp EEESSEEEEEE------EETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHH
T ss_pred Cccccccccee------eeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhh
Confidence 58889999999 7889999999999999999999999999999999999998 5799999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
+++++.+++ .|++|++| +|+...+
T Consensus 107 ll~~~~~~~-------~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 107 LLNDPELKD-------IPILILANKQDLPDAM 131 (175)
T ss_dssp HHTSGGGTT-------SEEEEEEESTTSTTSS
T ss_pred hcchhhccc-------ceEEEEeccccccCcc
Confidence 999998877 89999999 9987443
No 10
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.50 E-value=2.3e-14 Score=123.33 Aligned_cols=91 Identities=21% Similarity=0.336 Sum_probs=81.9
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||.|++.... .+++.++.+||||||+..|..|.+||+.++|+|||||+|| .-||+|....+..
T Consensus 45 ~pt~gf~Iktl------~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~ 108 (185)
T KOG0073|consen 45 SPTLGFQIKTL------EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTE 108 (185)
T ss_pred CCccceeeEEE------EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHH
Confidence 47889998888 7889999999999999999999999999999999999998 5899999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccCccccc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQ 313 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~ 313 (341)
++..+.+.. .|+++++| .|+.+..+..
T Consensus 109 lL~eerlaG-------~~~Lvlank~dl~~~l~~~ 136 (185)
T KOG0073|consen 109 LLVEERLAG-------APLLVLANKQDLPGALSLE 136 (185)
T ss_pred HHhhhhhcC-------CceEEEEecCcCccccCHH
Confidence 999988887 89999999 8887444433
No 11
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.2e-13 Score=115.07 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=78.8
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||.|++...+ .+++.++.+||+|||.+-|..|..||+++++||||||.|| ..|+--|..+|..
T Consensus 47 kPtigfnve~v------~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~ 110 (182)
T KOG0072|consen 47 KPTIGFNVETV------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYS 110 (182)
T ss_pred CCCCCcCcccc------ccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHH
Confidence 58889988888 7899999999999999999999999999999999999998 5789999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCcc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
++..+.+.+ ..+++|+| .|.-
T Consensus 111 mL~E~eLq~-------a~llv~anKqD~~ 132 (182)
T KOG0072|consen 111 MLQEEELQH-------AKLLVFANKQDYS 132 (182)
T ss_pred HhccHhhcC-------ceEEEEeccccch
Confidence 999999998 88999999 7763
No 12
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.39 E-value=3.6e-13 Score=113.48 Aligned_cols=88 Identities=20% Similarity=0.379 Sum_probs=77.0
Q ss_pred ccccCeEEEEeccCCCcccCC-ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSG-EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~-~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~ 278 (341)
.||.|++.... ++.+ +++.+||+||||+-|..|.+||++++.+|||+|++| ..|.+|--+.+-
T Consensus 46 tpT~GFn~k~v------~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ 109 (185)
T KOG0074|consen 46 TPTNGFNTKKV------EYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELV 109 (185)
T ss_pred cccCCcceEEE------eecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHH
Confidence 57889998888 5554 899999999999999999999999999999999776 578888888888
Q ss_pred HHhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426 279 WVLKQPCFEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
+++....++. .|++||+| .|+|-++
T Consensus 110 ELleeeKl~~-------vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 110 ELLEEEKLAE-------VPVLIFANKQDLLTAA 135 (185)
T ss_pred HHhhhhhhhc-------cceeehhhhhHHHhhc
Confidence 8888887777 99999999 8888555
No 13
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.29 E-value=5.6e-12 Score=106.97 Aligned_cols=85 Identities=19% Similarity=0.382 Sum_probs=79.1
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.||.|++-.++ ..+.+++++||+|||+..|..|..|+.+|++|+||||.+| ...+.-|++.+++
T Consensus 50 iptvGfnmrk~------tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~ 113 (186)
T KOG0075|consen 50 IPTVGFNMRKV------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHD 113 (186)
T ss_pred cccccceeEEe------ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHH
Confidence 78999999999 7888999999999999999999999999999999999998 4679999999999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCcc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
++..|.+.+ +|++++.| .|+-
T Consensus 114 LL~k~~l~g-------ip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 114 LLDKPSLTG-------IPLLVLGNKIDLP 135 (186)
T ss_pred HhcchhhcC-------CcEEEecccccCc
Confidence 999999888 99999998 7764
No 14
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.1e-11 Score=106.12 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=94.5
Q ss_pred Ccchh--hHHhhhhhccCCCCccCcc-cceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCcc
Q 019426 170 PDCAN--YFMENLQRLSDANYVPTKD-DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246 (341)
Q Consensus 170 ~d~~~--YFl~~l~ri~~~~Y~Pt~~-DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~ 246 (341)
+|+|+ -||+..+..+..+|.-.+- -| .+|.|.+.... .++...+.+||+|||.+.|..|..||..++
T Consensus 25 ldnAGKttfLe~~Kt~~~~~~~~l~~~ki----~~tvgLnig~i------~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 25 LDNAGKTTFLEALKTDFSKAYGGLNPSKI----TPTVGLNIGTI------EVCNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred cccCCchhHHHHHHHHHHhhhcCCCHHHe----ecccceeecce------eeccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 66664 6888888777766664321 13 68999998888 677899999999999999999999999999
Q ss_pred EEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCc
Q 019426 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEH 306 (341)
Q Consensus 247 ~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~ 306 (341)
+|||++|.++ ..|++++...|+.++.++.+.+ +|+++.+| -|+
T Consensus 95 ~ii~viDa~~----------~eR~~~~~t~~~~v~~~E~leg-------~p~L~lankqd~ 138 (197)
T KOG0076|consen 95 GIIYVIDATD----------RERFEESKTAFEKVVENEKLEG-------APVLVLANKQDL 138 (197)
T ss_pred eeEEeecCCC----------HHHHHHHHHHHHHHHHHHHhcC-------Cchhhhcchhhh
Confidence 9999999997 6899999999999999999988 99999999 555
No 15
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.07 E-value=2.6e-10 Score=101.06 Aligned_cols=84 Identities=20% Similarity=0.376 Sum_probs=71.0
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
||.|++...+ ...+..+.+||++||...|..|.++|.+++++|||+|+++. .++.++...+..+
T Consensus 47 pt~g~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~----------~s~~~~~~~l~~~ 110 (181)
T PLN00223 47 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRM 110 (181)
T ss_pred CCcceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHH
Confidence 4445555555 56678999999999999999999999999999999999983 5688999999999
Q ss_pred hcCccccCccccCCceeEEEEec-cCcc
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
++.+.+.+ .|++|++| +|+.
T Consensus 111 l~~~~~~~-------~piilv~NK~Dl~ 131 (181)
T PLN00223 111 LNEDELRD-------AVLLVFANKQDLP 131 (181)
T ss_pred hcCHhhCC-------CCEEEEEECCCCC
Confidence 98776666 89999999 9975
No 16
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=2e-09 Score=93.28 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=59.4
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+..+.+||++|++..+..|..++.++++++||+|.++ ..++.+....+..+.......+ .|
T Consensus 55 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~p 117 (173)
T cd04155 55 SDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEKLAG-------VP 117 (173)
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChhhcC-------CC
Confidence 345788999999998888899999999999999999996 3457777777777776544444 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++++| +|+..
T Consensus 118 ~ivv~nK~D~~~ 129 (173)
T cd04155 118 VLVFANKQDLAT 129 (173)
T ss_pred EEEEEECCCCcc
Confidence 999998 99863
No 17
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.98 E-value=3e-09 Score=91.50 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=57.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++|||+|+++ ...+++..+.+..+.+.....+ .|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii 110 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTED-------VPMI 110 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 3567899999999999999999999999999999986 3456666667777765433334 7899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 111 lv~nK~Dl~~ 120 (164)
T cd04175 111 LVGNKCDLED 120 (164)
T ss_pred EEEECCcchh
Confidence 9998 99863
No 18
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.97 E-value=1.4e-09 Score=94.68 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=70.4
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ ...+..+.+||++|+...|..|.+||.+++++|||+|.++ ..++.++...+..+.
T Consensus 30 t~g~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~ 93 (167)
T cd04161 30 TVGFTPTKL------RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELL 93 (167)
T ss_pred cccceEEEE------EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHH
Confidence 445544455 4567889999999999899999999999999999999997 367999999999999
Q ss_pred cCccccCccccCCceeEEEEec-cCccC
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+.+.+.+ .|++|++| +|+..
T Consensus 94 ~~~~~~~-------~piliv~NK~Dl~~ 114 (167)
T cd04161 94 QHPRVSG-------KPILVLANKQDKKN 114 (167)
T ss_pred cCccccC-------CcEEEEEeCCCCcC
Confidence 8766666 89999999 99863
No 19
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.95 E-value=1.6e-09 Score=95.21 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=64.3
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++||...+..|.+||.+++++|||+|+++ ..+++++.+.+..+++...+.+ .
T Consensus 53 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~~~~-------~ 115 (175)
T smart00177 53 TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDELRD-------A 115 (175)
T ss_pred EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHhhcC-------C
Confidence 3456789999999999999999999999999999999997 3678999999999988765555 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| +|+.
T Consensus 116 piilv~NK~Dl~ 127 (175)
T smart00177 116 VILVFANKQDLP 127 (175)
T ss_pred cEEEEEeCcCcc
Confidence 8999998 9976
No 20
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.93 E-value=1.9e-09 Score=93.14 Aligned_cols=74 Identities=22% Similarity=0.423 Sum_probs=64.4
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
......+.+||++||...+..|.++|.+++++|||+|+++ ..+++++.+.+..++..+.+.+ .
T Consensus 40 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 102 (159)
T cd04150 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDELRD-------A 102 (159)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHHhcC-------C
Confidence 4556889999999999888999999999999999999997 3678999999999988776655 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| +|+.
T Consensus 103 piilv~NK~Dl~ 114 (159)
T cd04150 103 VLLVFANKQDLP 114 (159)
T ss_pred CEEEEEECCCCC
Confidence 9999998 9975
No 21
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.90 E-value=3.1e-09 Score=92.82 Aligned_cols=74 Identities=19% Similarity=0.426 Sum_probs=63.9
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++|+...+..|.++|.+++++|||+|+++ ..++.+....+..+++.+.+.+ .
T Consensus 49 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 111 (168)
T cd04149 49 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDREMRD-------A 111 (168)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHhhcC-------C
Confidence 3456789999999999889999999999999999999997 3568888899999988766665 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| +|+.
T Consensus 112 piilv~NK~Dl~ 123 (168)
T cd04149 112 LLLVFANKQDLP 123 (168)
T ss_pred cEEEEEECcCCc
Confidence 8999998 9975
No 22
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.86 E-value=7e-09 Score=90.27 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=64.6
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++|+...+..|.++|.+++++|||+|+++ .+++.++...+..+++...+.+ .
T Consensus 39 ~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 101 (169)
T cd04158 39 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKELRD-------A 101 (169)
T ss_pred EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChhhCC-------C
Confidence 4567899999999999999999999999999999999997 3678889999999988765555 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| +|+.
T Consensus 102 piilv~NK~Dl~ 113 (169)
T cd04158 102 LLLIFANKQDVA 113 (169)
T ss_pred CEEEEEeCcCcc
Confidence 8999999 9975
No 23
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.84 E-value=5.7e-09 Score=92.47 Aligned_cols=74 Identities=19% Similarity=0.419 Sum_probs=63.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++|+...+..|.+||.+++++|||+|+++ .+++.++...+..++..+.+.+ .
T Consensus 57 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~~~~-------~ 119 (182)
T PTZ00133 57 EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDELRD-------A 119 (182)
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHhhcC-------C
Confidence 3456789999999999999999999999999999999997 3678888888998888766655 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| .|+.
T Consensus 120 piilv~NK~Dl~ 131 (182)
T PTZ00133 120 VLLVFANKQDLP 131 (182)
T ss_pred CEEEEEeCCCCC
Confidence 8999998 9975
No 24
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.80 E-value=9.2e-09 Score=91.14 Aligned_cols=74 Identities=20% Similarity=0.400 Sum_probs=64.3
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|.+||.+++++|||+|+++ ..++.++...+..++....+.+ .
T Consensus 57 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~~~-------~ 119 (184)
T smart00178 57 AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEELAT-------V 119 (184)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhhcC-------C
Confidence 3456789999999999999999999999999999999997 3678888889999988766666 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 120 piliv~NK~Dl~ 131 (184)
T smart00178 120 PFLILGNKIDAP 131 (184)
T ss_pred CEEEEEeCcccc
Confidence 9999999 9975
No 25
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.74 E-value=5.7e-08 Score=87.11 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=53.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||...+..|.+++.+++++|||+|+++ .+.+++....++.+.+.. . ..|++|
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~~~~--~-------~~piiv 115 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIEQNC--D-------DVCKVL 115 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--C-------CCCEEE
Confidence 468899999998889999999999999999999987 244555555555554421 1 268888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 116 VgNK~Dl~~ 124 (199)
T cd04110 116 VGNKNDDPE 124 (199)
T ss_pred EEECccccc
Confidence 898 99863
No 26
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.73 E-value=3.5e-08 Score=85.70 Aligned_cols=83 Identities=19% Similarity=0.426 Sum_probs=65.8
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
||.|+....+ ..++.++.+||+||+...+..|.++|.+++++|||+|+++. .++..+...+..+
T Consensus 30 pt~g~~~~~i------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~----------~s~~~~~~~l~~~ 93 (164)
T cd04162 30 PTTGFNSVAI------PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS----------ERLPLARQELHQL 93 (164)
T ss_pred ccCCcceEEE------eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHH
Confidence 4555554455 45678999999999999999999999999999999999983 4677777777777
Q ss_pred hcCccccCccccCCceeEEEEec-cCccC
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
.... .+ .|++|++| +|+..
T Consensus 94 ~~~~--~~-------~piilv~NK~Dl~~ 113 (164)
T cd04162 94 LQHP--PD-------LPLVVLANKQDLPA 113 (164)
T ss_pred HhCC--CC-------CcEEEEEeCcCCcC
Confidence 6543 34 78999999 99864
No 27
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.73 E-value=6e-08 Score=84.28 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=50.7
Q ss_pred ceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||++|+...+ ..|.+++.+++++|||+|+++ ...+......++.+.....-.+ .|++
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i 113 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNE-------VPRI 113 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCC-------CCEE
Confidence 578999999997666 468899999999999999986 2334444444444433222223 7999
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 114 iv~nK~Dl~~ 123 (170)
T cd04115 114 LVGNKCDLRE 123 (170)
T ss_pred EEEECccchh
Confidence 9998 99863
No 28
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.72 E-value=2.9e-08 Score=84.70 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=67.6
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ ...+..+.+||++|+...+..|..+|.+++++|||+|.++ .+++..+...++.+.
T Consensus 32 t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~ 95 (162)
T cd04157 32 TVGFNVESF------EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLL 95 (162)
T ss_pred ccccceEEE------EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHH
Confidence 345444455 4567889999999999999999999999999999999997 356777777788887
Q ss_pred cCccccCccccCCceeEEEEec-cCccCc
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+.+.+.+ .-.|++|++| +|+...
T Consensus 96 ~~~~~~~-----~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 96 NHPDIKH-----RRVPILFFANKMDLPDA 119 (162)
T ss_pred cCccccc-----CCCCEEEEEeCccccCC
Confidence 7665532 1278888888 998743
No 29
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.71 E-value=7.1e-08 Score=80.89 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=51.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- +.+.+....+..+..... . ..|+++
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~-------~~p~iv 110 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR----------ESFENLDKWLKELKEYAP-E-------NIPIIL 110 (159)
T ss_pred EEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-C-------CCcEEE
Confidence 5788999999988888999999999999999999872 334555555555544321 1 267888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 111 v~nK~D~~ 118 (159)
T cd00154 111 VGNKIDLE 118 (159)
T ss_pred EEEccccc
Confidence 887 9996
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.71 E-value=7.6e-08 Score=83.11 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=51.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++ ...++........+.+.. . +-.|++|
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~---~-----~~~~iii 112 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT---N-----PNTVIFL 112 (166)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC---C-----CCCeEEE
Confidence 578999999999888999999999999999999997 233444334444332211 0 1268888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
.+| +|+..+
T Consensus 113 v~nK~Dl~~~ 122 (166)
T cd04122 113 IGNKADLEAQ 122 (166)
T ss_pred EEECcccccc
Confidence 888 998744
No 31
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.70 E-value=1.1e-07 Score=81.14 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=52.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+......|..++.+++++|||+|+++ .+.++.....+..+.....-.+ .|+++
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~~~~i 111 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNND-------IVKML 111 (161)
T ss_pred EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCC-------CcEEE
Confidence 468999999998888889999999999999999986 2445555555555544322223 77888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
++| +|+.
T Consensus 112 v~nK~D~~ 119 (161)
T cd01863 112 VGNKIDKE 119 (161)
T ss_pred EEECCccc
Confidence 888 9987
No 32
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.69 E-value=8.2e-08 Score=82.90 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=52.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.++++++||+|+++ .+.+++....++.+.... ..+ .|+++
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~-------~piiv 111 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTYS-WDN-------AQVIL 111 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CCEEE
Confidence 578999999998888899999999999999999986 234554444444443211 112 68899
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 112 v~nK~Dl~~ 120 (165)
T cd01865 112 VGNKCDMED 120 (165)
T ss_pred EEECcccCc
Confidence 998 99863
No 33
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.68 E-value=4.2e-08 Score=85.86 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=63.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+.++.+||++|+...+..|..+|.+++++|||+|.++ .+++.++.+.+..++++..+.+ .
T Consensus 55 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~~~-------~ 117 (174)
T cd04153 55 VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDLRK-------A 117 (174)
T ss_pred EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcC-------C
Confidence 4557889999999999889999999999999999999987 3567888888888888765555 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 118 p~viv~NK~Dl~~ 130 (174)
T cd04153 118 VLLVLANKQDLKG 130 (174)
T ss_pred CEEEEEECCCCCC
Confidence 9999998 99863
No 34
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.67 E-value=1.3e-07 Score=81.02 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=52.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||...+..|..++.+++++|+|+|+++ ...+++....+..+.......+ .|+++
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii~ 110 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDD-------VPIVL 110 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 578899999999888999999999999999999986 2334444444454443221122 78898
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 v~nK~Dl~~ 119 (164)
T smart00173 111 VGNKCDLES 119 (164)
T ss_pred EEECccccc
Confidence 898 99873
No 35
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9.2e-09 Score=89.19 Aligned_cols=74 Identities=22% Similarity=0.435 Sum_probs=69.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++++|..+|.||...-|+-|..||-.|++|+|.||..| ..|+.||+...+.+++...+++ .
T Consensus 60 ~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~la~-------v 122 (193)
T KOG0077|consen 60 SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDESLAT-------V 122 (193)
T ss_pred eecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHHHhc-------C
Confidence 5788999999999999999999999999999999999988 5899999999999999998888 8
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++..| +|+.
T Consensus 123 p~lilgnKId~p 134 (193)
T KOG0077|consen 123 PFLILGNKIDIP 134 (193)
T ss_pred cceeecccccCC
Confidence 9999999 9986
No 36
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.65 E-value=1.7e-07 Score=79.76 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=52.8
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||.+||......|..++.+++++++|+|+++ ...+......+..+.......+ .|++
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~pii 109 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDN-------VPLL 109 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 4578999999998888889999999999999999885 2334444444444444322223 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 110 iv~NK~D~~~ 119 (164)
T cd04139 110 LVGNKCDLED 119 (164)
T ss_pred EEEEcccccc
Confidence 8888 99974
No 37
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.65 E-value=1.5e-07 Score=83.14 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=49.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+.... -. ..|+++
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~-~~-------~~~~iv 110 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ----------ESFENLKFWINEINRYA-RE-------NVIKVI 110 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CC-------CCeEEE
Confidence 5689999999988888999999999999999999862 22333333333332211 01 167888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 v~nK~Dl~~ 119 (188)
T cd04125 111 VANKSDLVN 119 (188)
T ss_pred EEECCCCcc
Confidence 888 99873
No 38
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.65 E-value=5.8e-08 Score=83.17 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=59.9
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+.++++||++|+...+..|..++.+++++|||+|+++. .++....+.+..+++...+.+ .
T Consensus 39 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~ 101 (158)
T cd04151 39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR----------DRLGTAKEELHAMLEEEELKG-------A 101 (158)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchhhcC-------C
Confidence 34567899999999998999999999999999999999873 445556666666666555555 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|++| +|+.
T Consensus 102 piiiv~nK~Dl~ 113 (158)
T cd04151 102 VLLVFANKQDMP 113 (158)
T ss_pred cEEEEEeCCCCC
Confidence 9999998 9986
No 39
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.63 E-value=1.5e-07 Score=80.36 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=53.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++ .+.+.+....+..+..... .+ .|+++
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~-------~~iil 110 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVRDERG-ND-------VIIVL 110 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CC-------CEEEE
Confidence 468999999998888899999999999999999986 3456665566665543211 13 78999
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 111 v~nK~D~~ 118 (161)
T cd01861 111 VGNKTDLS 118 (161)
T ss_pred EEEChhcc
Confidence 998 9996
No 40
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.63 E-value=2e-07 Score=79.10 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=51.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.++++++||+|+++- +.+.+....++.+..... .+ .|+++
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~-------~piii 110 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA----------DSFQKVKKWIKELKQMRG-NN-------ISLVI 110 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CC-------CeEEE
Confidence 4689999999988888899999999999999999873 344444444444432111 12 68888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 111 v~nK~D~~~~ 120 (162)
T cd04123 111 VGNKIDLERQ 120 (162)
T ss_pred EEECcccccc
Confidence 888 998843
No 41
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.62 E-value=7.5e-08 Score=82.78 Aligned_cols=84 Identities=19% Similarity=0.353 Sum_probs=68.7
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ .+.+..+.+||++|+...+..|..+|.+++++|||+|.++. ..+.+....+..++
T Consensus 37 t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~----------~~~~~~~~~~~~~~ 100 (167)
T cd04160 37 TVGLNIGTI------EVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDR----------ERFEESKSALEKVL 100 (167)
T ss_pred ccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchH----------HHHHHHHHHHHHHH
Confidence 445555555 45678999999999999899999999999999999999863 45788888888888
Q ss_pred cCccccCccccCCceeEEEEec-cCccC
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
......+ .|+++++| +|+..
T Consensus 101 ~~~~~~~-------~p~ilv~NK~D~~~ 121 (167)
T cd04160 101 RNEALEG-------VPLLILANKQDLPD 121 (167)
T ss_pred hChhhcC-------CCEEEEEEcccccc
Confidence 8766556 79999999 99874
No 42
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.62 E-value=7.7e-08 Score=84.91 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=63.4
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+.++.+||++|+...+..|.+++.+++++|||+|+++ .+++.++...+..++......+ .
T Consensus 59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~ 121 (190)
T cd00879 59 TIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEELAN-------V 121 (190)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCccccC-------C
Confidence 4557789999999998888999999999999999999986 3667788888899887665555 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 122 pvivv~NK~Dl~ 133 (190)
T cd00879 122 PFLILGNKIDLP 133 (190)
T ss_pred CEEEEEeCCCCC
Confidence 9999998 9986
No 43
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.62 E-value=1.8e-07 Score=83.24 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=50.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||...+..|..++.+++++|+|+|+++- +.+++....+..+.... -.+ .|+++
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piii 111 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK----------ASFDNIRAWLTEIKEYA-QED-------VVIML 111 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCC-------CcEEE
Confidence 5688999999988888899999999999999999862 33444444444443311 112 78999
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 112 v~NK~Dl~ 119 (191)
T cd04112 112 LGNKADMS 119 (191)
T ss_pred EEEcccch
Confidence 998 9986
No 44
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.59 E-value=1e-07 Score=83.05 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=61.7
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++||...+..|.++|.+++++|||+|.++ ..++.+....+..++......+ .
T Consensus 54 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 116 (173)
T cd04154 54 EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEERLAG-------A 116 (173)
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhcC-------C
Confidence 3446789999999999888899999999999999999987 3567777778888877554444 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 117 p~iiv~nK~Dl~~ 129 (173)
T cd04154 117 TLLILANKQDLPG 129 (173)
T ss_pred CEEEEEECccccc
Confidence 8999998 99873
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.58 E-value=3e-07 Score=78.49 Aligned_cols=71 Identities=7% Similarity=0.144 Sum_probs=49.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC----ccccCccccCCc
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ----PCFEVFFCATSA 295 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~----~~f~~~~~~~~~ 295 (341)
...+.+||++|+...+..|.+++.+++++|+|+|+++- +.+++....++.+... ....+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~------- 110 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR----------QSFEALDSWLKEMKQEGGPHGNMEN------- 110 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccccCCC-------
Confidence 35789999999988888899999999999999999972 2333333333333221 11122
Q ss_pred eeEEEEec-cCcc
Q 019426 296 LHITAFVA-CEHV 307 (341)
Q Consensus 296 ~~iilf~n-~d~~ 307 (341)
.|+++.+| +|+.
T Consensus 111 ~piilv~nK~Dl~ 123 (168)
T cd04119 111 IVVVVCANKIDLT 123 (168)
T ss_pred ceEEEEEEchhcc
Confidence 78888888 9987
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.57 E-value=3.7e-07 Score=78.57 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=51.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++ .+.+.+....++.+-... -.+ .|+++
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~~~~-~~~-------~~~ii 112 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEIDRYA-SEN-------VNKLL 112 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCC-------CcEEE
Confidence 468899999998888899999999999999999987 234555555554443211 112 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 113 v~nK~Dl~ 120 (166)
T cd01869 113 VGNKCDLT 120 (166)
T ss_pred EEEChhcc
Confidence 888 9986
No 47
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.55 E-value=3.3e-07 Score=80.04 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=58.0
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|.++. ..+++....+..+++.....+ .|+++
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~p~il 111 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR----------KSFEVVKVIYDKILDMLGKES-------VPIVL 111 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 3578999999998888999999999999999999973 567788888888887543333 68899
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 112 v~NK~Dl~ 119 (180)
T cd04137 112 VGNKSDLH 119 (180)
T ss_pred EEEchhhh
Confidence 998 9986
No 48
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.54 E-value=2e-07 Score=82.37 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=58.6
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||++|+...+..|..++.+++++|||+|+++. +++.++...+..+.......+ .|+
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~i~~~~~~~~-------~p~ 112 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----------ERMEEAKTELHKITRFSENQG-------VPV 112 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhhhcCC-------CcE
Confidence 467899999999988889999999999999999999873 567777777777766433334 788
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++.+| +|+.
T Consensus 113 iiv~NK~D~~ 122 (183)
T cd04152 113 LVLANKQDLP 122 (183)
T ss_pred EEEEECcCcc
Confidence 98888 9986
No 49
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.54 E-value=5e-07 Score=78.19 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=52.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++- .-++.....++.+.....-.+ .|+++
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piii 111 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE----------ASLNELGELREQVLRIKDSDN-------VPMVL 111 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCC-------CCEEE
Confidence 5789999999999999999999999999999999972 234444444444443221122 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 112 v~nK~D~~~ 120 (168)
T cd04177 112 VGNKADLED 120 (168)
T ss_pred EEEChhccc
Confidence 888 99873
No 50
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.53 E-value=4.6e-07 Score=77.26 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=51.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+......|..++.+++++|+|+|+++ .+.+++.......+..... .+ .|+++
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~~~~~-~~-------~pivv 110 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELREYAD-PN-------VVIML 110 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CC-------CeEEE
Confidence 467899999998777889999999999999999986 2445554444444333211 12 79999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 111 v~nK~D~~~ 119 (164)
T smart00175 111 VGNKSDLED 119 (164)
T ss_pred EEEchhccc
Confidence 998 99863
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.53 E-value=6.3e-07 Score=79.62 Aligned_cols=70 Identities=10% Similarity=0.235 Sum_probs=50.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||++||...+..|..+|.+++++|+|.|+++- +-++.... .+..+... ..+ .|++
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~----------~sf~~~~~~~~~~i~~~--~~~-------~pii 108 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP----------DSLENVESKWLGEIREH--CPG-------VKLV 108 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence 5789999999988888899999999999999999972 22332222 22333221 112 7899
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
|.+| +|+...
T Consensus 109 lvgNK~Dl~~~ 119 (189)
T cd04134 109 LVALKCDLREA 119 (189)
T ss_pred EEEEChhhccC
Confidence 9999 998743
No 52
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.52 E-value=2.6e-07 Score=75.16 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=49.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+......|...+.+++++|+|.|+++. .-+++..+++..+.+..... ...|++|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~----------~s~~~~~~~~~~l~~~~~~~------~~~piil 113 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP----------ESLEYLSQLLKWLKNIRKRD------KNIPIIL 113 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH----------HHHHHHHHHHHHHHHHHHHS------SCSEEEE
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCCh----------HHHHHHHHHHHHHHHHHccC------CCCCEEE
Confidence 3488999999977777777778999999999999973 33555555555554433211 1289999
Q ss_pred Eec-cC
Q 019426 301 FVA-CE 305 (341)
Q Consensus 301 f~n-~d 305 (341)
.+| .|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 888 65
No 53
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.51 E-value=2.7e-07 Score=78.68 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=61.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|.++. +++.+....+..++..+.+.+ .|++
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~pii 105 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNEHIKG-------VPVV 105 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHhchhhcC-------CCEE
Confidence 46899999999998889999999999999999999873 578888888888888766556 8999
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+++| +|+.
T Consensus 106 lv~nK~Dl~ 114 (160)
T cd04156 106 LLANKQDLP 114 (160)
T ss_pred EEEECcccc
Confidence 9998 9985
No 54
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.47 E-value=4.3e-07 Score=77.42 Aligned_cols=85 Identities=24% Similarity=0.405 Sum_probs=69.5
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
+|.|+....+ .+.+..+.+||++|+...+..|..++.++++++||+|.++ ..++.++...+..+
T Consensus 29 ~t~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~ 92 (158)
T cd00878 29 PTIGFNVETV------EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKL 92 (158)
T ss_pred CCcCcceEEE------EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 3445555555 5567889999999999888899999999999999999996 45899999999999
Q ss_pred hcCccccCccccCCceeEEEEec-cCccC
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+......+ .|+++++| +|+..
T Consensus 93 ~~~~~~~~-------~piiiv~nK~D~~~ 114 (158)
T cd00878 93 LNEEELKG-------VPLLIFANKQDLPG 114 (158)
T ss_pred HhCcccCC-------CcEEEEeeccCCcc
Confidence 88654444 79999998 99874
No 55
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.41 E-value=1.6e-06 Score=74.07 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=49.7
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|.+++.+++++|+|+|+++- ..+......+..+.... -.+ .|+++
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~~iiv 110 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR----------TSFEALPTWLSDARALA-SPN-------IVVIL 110 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence 4688999999988888899999999999999999973 22333333333332111 012 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 v~nK~D~~~ 119 (161)
T cd04113 111 VGNKSDLAD 119 (161)
T ss_pred EEEchhcch
Confidence 888 99874
No 56
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.41 E-value=8.6e-07 Score=74.38 Aligned_cols=86 Identities=19% Similarity=0.350 Sum_probs=66.6
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
||.|+....+ ..++..+.+||++|+...+..|..++.++++++||+|+++. ..+......+..+
T Consensus 30 ~t~~~~~~~~------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~ 93 (159)
T cd04159 30 PTVGFNMRKV------TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR----------TALEAAKNELHDL 93 (159)
T ss_pred CCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHH
Confidence 5666655555 45568899999999999999999999999999999999873 3456666677777
Q ss_pred hcCccccCccccCCceeEEEEec-cCccCc
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+....+.+ .|+++++| +|+...
T Consensus 94 ~~~~~~~~-------~p~iiv~nK~D~~~~ 116 (159)
T cd04159 94 LEKPSLEG-------IPLLVLGNKNDLPGA 116 (159)
T ss_pred HcChhhcC-------CCEEEEEeCccccCC
Confidence 76554444 78888888 998743
No 57
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.41 E-value=1.5e-06 Score=73.52 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=53.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+......|..++.+++++|+|+|+++- ..+.+....+..+.+...-.. .|+++
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~iv 109 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR----------ESFEEIKGYREQILRVKDDED-------IPIVL 109 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence 5688999999988888888999999999999998862 345555666666655322123 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 110 v~nK~D~~~ 118 (160)
T cd00876 110 VGNKCDLEN 118 (160)
T ss_pred EEECCcccc
Confidence 998 99884
No 58
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=78.21 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=57.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+++.+||++||...|..|..|+.+++++++|+|..+ ..+..+....+...+....-.. .|+++
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~-------~~iil 116 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDD-------VPILL 116 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCC-------ceEEE
Confidence 468999999999999999999999999999999987 3667777777665554322122 78888
Q ss_pred Eec-cCccCcc
Q 019426 301 FVA-CEHVSGM 310 (341)
Q Consensus 301 f~n-~d~~~~~ 310 (341)
..| +|++...
T Consensus 117 v~nK~Dl~~~~ 127 (219)
T COG1100 117 VGNKIDLFDEQ 127 (219)
T ss_pred Eecccccccch
Confidence 888 9998443
No 59
>PTZ00099 rab6; Provisional
Probab=98.32 E-value=1.7e-06 Score=76.55 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
..+.+.+||++||...+..|..+|.+++++|+|+|+++ ...+++....+..+..... .+ .||
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i~~~~~-~~-------~pi 88 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDILNERG-KD-------VII 88 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcC-CC-------CeE
Confidence 34789999999999999999999999999999999997 3456666666666655321 22 788
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|.+| +|+.
T Consensus 89 ilVgNK~DL~ 98 (176)
T PTZ00099 89 ALVGNKTDLG 98 (176)
T ss_pred EEEEECcccc
Confidence 89998 9986
No 60
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.29 E-value=1.7e-06 Score=78.37 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=53.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..||.+++++|+|+|+++ ...+++.....+ .++.....+ .||+
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~-~i~~~~~~~-------~pii 109 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMK-MIDKYASED-------AELL 109 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHH-HHHHhCCCC-------CcEE
Confidence 3788999999999999999999999999999999997 345555544333 333222223 7899
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+.
T Consensus 110 lVgNK~DL~ 118 (202)
T cd04120 110 LVGNKLDCE 118 (202)
T ss_pred EEEECcccc
Confidence 9999 9985
No 61
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.26 E-value=6.7e-06 Score=70.61 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=48.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||......+..++..++++++|+|.++- ..+.+....|-..+.... .+ .|+++
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~p~iv 109 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP----------SSFENVKTKWIPEIRHYC-PN-------VPIIL 109 (171)
T ss_pred EEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhC-CC-------CCEEE
Confidence 4678999999976666667778999999999998862 234444443333222111 13 78888
Q ss_pred Eec-cCccCcc
Q 019426 301 FVA-CEHVSGM 310 (341)
Q Consensus 301 f~n-~d~~~~~ 310 (341)
.+| +|+....
T Consensus 110 v~nK~Dl~~~~ 120 (171)
T cd00157 110 VGTKIDLRDDE 120 (171)
T ss_pred EEccHHhhhch
Confidence 888 9988443
No 62
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.26 E-value=2.7e-06 Score=69.52 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=50.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+......|..++.+++++|||+|+++. ..+.+....+........-.+ .|+++
T Consensus 45 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~~~iv 107 (157)
T cd00882 45 VKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR----------ESFENVKEWLLLILINKEGEN-------IPIIL 107 (157)
T ss_pred EEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhccCC-------CcEEE
Confidence 5689999999998889999999999999999999972 233333333222222222222 67888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 108 v~nk~D~~~~ 117 (157)
T cd00882 108 VGNKIDLPEE 117 (157)
T ss_pred EEeccccccc
Confidence 887 998743
No 63
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.15 E-value=1.7e-05 Score=70.21 Aligned_cols=69 Identities=9% Similarity=0.072 Sum_probs=45.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||.+|+...+..+..++.+++++++|.|+++. ..+++....|...+.. ...+ .||+|
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~----------~s~~~~~~~~~~~i~~-~~~~-------~piil 110 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP----------DSLENVRTKWIEEVRR-YCPN-------VPVIL 110 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence 3578999999976665565678899999999998762 2333333333333321 1122 78888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
..| +|+.
T Consensus 111 vgnK~Dl~ 118 (187)
T cd04129 111 VGLKKDLR 118 (187)
T ss_pred EeeChhhh
Confidence 888 9975
No 64
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.13 E-value=8.6e-06 Score=69.36 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=55.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++++|+|+++ ...+++....++.+.......+ .|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii 110 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTEN-------VPMV 110 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 3568899999999999999999999999999999987 2445566666666654322223 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 111 lv~nK~Dl~~ 120 (163)
T cd04136 111 LVGNKCDLED 120 (163)
T ss_pred EEEECccccc
Confidence 8888 99863
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.12 E-value=7.8e-06 Score=69.95 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=54.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|.|+++ ...+++....++.+.......+ .|++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~pivi 111 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEK-------VPIIL 111 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 468899999999999999999999999999999997 3456666665565654332233 78888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 112 v~nK~Dl~ 119 (163)
T cd04176 112 VGNKVDLE 119 (163)
T ss_pred EEECccch
Confidence 888 9975
No 66
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.08 E-value=1.3e-05 Score=71.84 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=54.6
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
..+.+.+||++|+...+..|..+|.+++++|+|+|+++ ...++++...+..+.+.-.+. ...-.|+
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~----~~~~~pi 113 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLP----NGEPIPC 113 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccc----CCCCCcE
Confidence 35678999999998888899999999999999999987 355666654444443211110 0122789
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|++| +|+.
T Consensus 114 ilv~NK~Dl~ 123 (201)
T cd04107 114 LLLANKCDLK 123 (201)
T ss_pred EEEEECCCcc
Confidence 99998 9986
No 67
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.07 E-value=5.1e-05 Score=67.84 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=29.7
Q ss_pred HHHhcHHHHHHHHHHHHHh-----hcccceEEeccCCCcchhHHHH
Q 019426 26 ENAQTAEIERRIEQETKAE-----KHIQKLLLLGAGESGKSTIFKQ 66 (341)
Q Consensus 26 ~~~~s~~Id~~L~~~~~~~-----~~~~kiLllG~~eSGKST~~kq 66 (341)
.....++|+.-+++.+... ....+++++|.+|+|||||++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~ 60 (204)
T cd01878 15 IAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNA 60 (204)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHH
Confidence 4555667777666644332 2357999999999999999875
No 68
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.07 E-value=1.1e-05 Score=71.96 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=53.0
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..||.+++++|+|.|+++ ...++.....|...+... ..+ .||+
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~-~~~-------~pii 111 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH-CPN-------VPIL 111 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCC-------CCEE
Confidence 4678999999999999999999999999999999997 345655554443322211 123 7999
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+-
T Consensus 112 lvgNK~DL~ 120 (191)
T cd01875 112 LVGTKKDLR 120 (191)
T ss_pred EEEeChhhh
Confidence 9999 9985
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.04 E-value=9.7e-06 Score=73.28 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=53.0
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
..+++.+||++||...+..|..||.+++++|+|+|+++- ..++......+.+.... .+ .||
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~----------~S~~~i~~w~~~i~~~~--~~-------~pi 102 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR----------VTYKNVPNWHRDLVRVC--EN-------IPI 102 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC--CC-------CCE
Confidence 357899999999998899999999999999999999973 34444444333343321 23 799
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|++| +|+.
T Consensus 103 ilvgNK~Dl~ 112 (200)
T smart00176 103 VLCGNKVDVK 112 (200)
T ss_pred EEEEECcccc
Confidence 99999 9975
No 70
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.00 E-value=1.5e-05 Score=72.10 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCceeEEEecCCccccccccccccCCc-cEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v-~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
.+..+.+||++|+...|..|..++.++ ++||||+|.++. .+.+.++...+..++......+ .-.|
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~-----~~~p 111 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVK-----NKIP 111 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhcc-----CCCC
Confidence 357899999999999999999999998 999999999984 2567888888877776543321 1279
Q ss_pred EEEEec-cCcc
Q 019426 298 ITAFVA-CEHV 307 (341)
Q Consensus 298 iilf~n-~d~~ 307 (341)
++|++| +|++
T Consensus 112 vliv~NK~Dl~ 122 (203)
T cd04105 112 VLIACNKQDLF 122 (203)
T ss_pred EEEEecchhhc
Confidence 999999 9987
No 71
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.96 E-value=2.6e-05 Score=68.38 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=51.8
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++|||.|+++ .+.+.+....|...+... ..+ .|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~-~~~-------~pii 109 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH-CPN-------TPII 109 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 4678899999999888999999999999999999997 244555443333322221 123 7899
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|++| +|+.
T Consensus 110 lvgnK~Dl~ 118 (174)
T cd01871 110 LVGTKLDLR 118 (174)
T ss_pred EEeeChhhc
Confidence 9998 9986
No 72
>PTZ00369 Ras-like protein; Provisional
Probab=97.96 E-value=2.5e-05 Score=69.26 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=53.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++ ...+.+.....+.+.+.....+ .|++
T Consensus 52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii 114 (189)
T PTZ00369 52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDR-------VPMI 114 (189)
T ss_pred EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 4578899999999999999999999999999999997 2345555555555544221122 7899
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|++| +|+.
T Consensus 115 iv~nK~Dl~ 123 (189)
T PTZ00369 115 LVGNKCDLD 123 (189)
T ss_pred EEEECcccc
Confidence 9998 9975
No 73
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.96 E-value=2.4e-05 Score=73.01 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=57.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc-CccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE-VFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~-~~~~~~~~~~ii 299 (341)
+.+.+||++|+...+..|..++.+++++|+|.|+++ ...+++...+++.+....++. ..-....-.|++
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI 117 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMV 117 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence 578899999998877778888999999999999996 355777777888887654320 000001127889
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 118 ivgNK~Dl~~ 127 (247)
T cd04143 118 ICGNKADRDF 127 (247)
T ss_pred EEEECccchh
Confidence 9998 99873
No 74
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.95 E-value=2.3e-05 Score=68.49 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=52.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|.++|.+++++|+|+|+++ ...+......++.+-....-.+ .|++|
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~-------~piil 112 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTED-------IPLVL 112 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 578999999999899999999999999999999987 3455555543333322111122 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 113 vgNK~Dl~~ 121 (172)
T cd04141 113 VGNKVDLES 121 (172)
T ss_pred EEEChhhhh
Confidence 999 99863
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.95 E-value=2.8e-05 Score=66.23 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=56.3
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+..+.+||++|+...+..|.+++.+++++|||+|.++ ...+..+...+..+..... .+ .|
T Consensus 47 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~-------~~ 108 (163)
T cd01860 47 DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PN-------II 108 (163)
T ss_pred CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CC-------Ce
Confidence 345689999999998888899999999999999999986 2446666666666654321 22 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++.+| +|+..
T Consensus 109 iivv~nK~D~~~ 120 (163)
T cd01860 109 IALVGNKADLES 120 (163)
T ss_pred EEEEEECccccc
Confidence 888888 99873
No 76
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.93 E-value=2.7e-05 Score=69.68 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=55.9
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..+|.+++++|+|.|+++ .+.++.....++.+..+ ..+ .|++
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~-------~pii 114 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APG-------VPKI 114 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence 3678999999999999999999999999999999997 46677776666666332 123 7999
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+.
T Consensus 115 lVGNK~DL~ 123 (189)
T cd04121 115 LVGNRLHLA 123 (189)
T ss_pred EEEECccch
Confidence 9999 9986
No 77
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.92 E-value=2.8e-05 Score=71.47 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=54.2
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..+|.+++++|+|.|+++ ...++.....|...+.. ...+ .|++
T Consensus 48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~-------~pii 109 (222)
T cd04173 48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPN-------AKVV 109 (222)
T ss_pred EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCC-------CCEE
Confidence 4678999999998888889999999999999999997 24566665555544332 1122 7899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 110 LVgnK~DL~~ 119 (222)
T cd04173 110 LVGCKLDMRT 119 (222)
T ss_pred EEEECccccc
Confidence 9998 99863
No 78
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.92 E-value=2.9e-05 Score=71.26 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=55.6
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++||...+..|..+|.+++++|||+|+++ ...+.+....|..+.... ..+ .|+
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~~-~~~-------~pi 103 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDTA-NED-------CLF 103 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCC-------CcE
Confidence 34578999999999999999999999999999999997 344566666666665421 122 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 104 IlVgNK~DL~~ 114 (220)
T cd04126 104 AVVGNKLDLTE 114 (220)
T ss_pred EEEEECccccc
Confidence 99998 99874
No 79
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.91 E-value=3.8e-05 Score=67.44 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=51.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++||...+..|..+|.+++++|+|.|+++ ...+++....|...+... ..+ .|++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~-~~~-------~piil 110 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH-CPK-------TPFLL 110 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEEE
Confidence 678899999999888899999999999999999987 234544444333322211 112 79999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 vgnK~Dl~~ 119 (175)
T cd01874 111 VGTQIDLRD 119 (175)
T ss_pred EEECHhhhh
Confidence 998 99863
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.90 E-value=4.6e-05 Score=66.36 Aligned_cols=68 Identities=9% Similarity=-0.039 Sum_probs=49.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+||+...+..|..+|.+++++|||+|.++- ..++.....++.+... .+ .|+++
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~~~~~---~~-------~p~ii 113 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDP----------KSFSYCAEVYKKYFML---GE-------IPCLF 113 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHhccC---CC-------CeEEE
Confidence 5688999999998888999999999999999998862 2333333333332111 12 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 114 v~NK~Dl~~ 122 (169)
T cd01892 114 VAAKADLDE 122 (169)
T ss_pred EEEcccccc
Confidence 998 99863
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.90 E-value=4.2e-05 Score=64.70 Aligned_cols=71 Identities=8% Similarity=0.100 Sum_probs=52.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||.+|+...+..|.+++.+++++++|+|+++- ..+.+....+..+.......+ .|+++
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piiv 111 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR----------KSFEDIHTYREQIKRVKDSDD-------VPMVL 111 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 4578899999998889999999999999999999862 334444444455544322223 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 112 v~nK~Dl~~ 120 (162)
T cd04138 112 VGNKCDLAA 120 (162)
T ss_pred EEECccccc
Confidence 888 99874
No 82
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.86 E-value=4.4e-05 Score=66.41 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=53.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++|||+|+++ ...+.+....+..+.......+ .|++
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii 124 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCEN-------PDIV 124 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence 4679999999999888899999999999999999986 2344554444444443322223 6788
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+.+| +|+.
T Consensus 125 iv~nK~Dl~ 133 (180)
T cd04127 125 LCGNKADLE 133 (180)
T ss_pred EEEeCccch
Confidence 8888 9986
No 83
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.83 E-value=4.8e-05 Score=67.96 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=55.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++ ...+++....+..+.......+ .|++|
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~piil 109 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKF-------VPIVV 109 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence 578999999998888888889999999999999987 2456666666666665433233 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 110 v~NK~Dl~~ 118 (198)
T cd04147 110 VGNKADSLE 118 (198)
T ss_pred EEEcccccc
Confidence 998 99874
No 84
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.82 E-value=4.5e-05 Score=67.63 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=49.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCceeE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSALHI 298 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~~~i 298 (341)
+.+.+||++|+...+..|..+|.+++++|||+|+++- +.++.....++.+.+.. ...+ .|+
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~-------~pi 109 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR----------STFERVERFREQIQRVKDESAAD-------VPI 109 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcccCCC-------CCE
Confidence 5689999999988888999999999999999999862 22333333333333211 1122 688
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|.+| +|+.
T Consensus 110 ilvgNK~Dl~ 119 (190)
T cd04144 110 MIVGNKCDKV 119 (190)
T ss_pred EEEEEChhcc
Confidence 88888 9986
No 85
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.81 E-value=8.2e-05 Score=65.76 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426 186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 265 (341)
Q Consensus 186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~ 265 (341)
.+|.||..|....+ ..+ .-..+++.+||++||...+..+..+|.+++++|+|.|+++
T Consensus 28 ~~~~~Ti~~~~~~~--------~~~------~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~--------- 84 (176)
T cd04133 28 TDYIPTVFDNFSAN--------VSV------DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS--------- 84 (176)
T ss_pred CCCCCcceeeeEEE--------EEE------CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC---------
Confidence 46889887654311 122 2234678999999999988999999999999999999997
Q ss_pred CccchHHHHH-HHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426 266 QKNRMMETKE-LFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 266 ~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
...++.... ....+-... .+ .|++|.+| +|+..
T Consensus 85 -~~Sf~~~~~~w~~~i~~~~--~~-------~piilvgnK~Dl~~ 119 (176)
T cd04133 85 -RASYENVLKKWVPELRHYA--PN-------VPIVLVGTKLDLRD 119 (176)
T ss_pred -HHHHHHHHHHHHHHHHHhC--CC-------CCEEEEEeChhhcc
Confidence 234444422 223332211 12 78999998 99863
No 86
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.81 E-value=5.5e-05 Score=67.18 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=50.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..+|.+++++|+|.|+++ ...++..+..|...+.. ...+ .|++
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~-~~~~-------~pii 113 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQE-FCPN-------TKML 113 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence 4679999999998888889999999999999999987 23344443333322221 1112 6888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+-
T Consensus 114 lVgNK~DL~ 122 (182)
T cd04172 114 LVGCKSDLR 122 (182)
T ss_pred EEeEChhhh
Confidence 8888 9974
No 87
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.81 E-value=4.8e-05 Score=69.46 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=52.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
...++.+||++||...+..|..||.+++++|+|+|+++ ...++.....++.+... ..+ .||
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~~~--~~~-------~pi 120 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CEN-------IPI 120 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHHHh--CCC-------CcE
Confidence 34789999999999889999999999999999999997 23344333444444321 123 789
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|++| +|+.
T Consensus 121 ilvgNK~Dl~ 130 (219)
T PLN03071 121 VLCGNKVDVK 130 (219)
T ss_pred EEEEEchhhh
Confidence 99998 9975
No 88
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.81 E-value=8.3e-05 Score=64.00 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=54.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..+|.++++++||+|+++ .+.+++....++.+.+.. ..+ .|++
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~-~~~-------~~ii 109 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEYA-PEG-------VQKI 109 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CeEE
Confidence 3678999999998888899999999999999999997 345666555555554321 122 7888
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
+.+| +|+..+
T Consensus 110 lvgnK~Dl~~~ 120 (161)
T cd04117 110 LIGNKADEEQK 120 (161)
T ss_pred EEEECcccccc
Confidence 8898 998643
No 89
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.78 E-value=7.9e-05 Score=64.04 Aligned_cols=70 Identities=7% Similarity=0.069 Sum_probs=49.5
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|+|+|+++- .-..+....++.+... ..+ .|+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~-------~p~ 107 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK----------ITYKNLSKWYEELREY--RPE-------IPC 107 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CcE
Confidence 456789999999998889999999999999999998862 1122222222333221 112 688
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++++| +|+.
T Consensus 108 ivv~nK~Dl~ 117 (161)
T cd04124 108 IVVANKIDLD 117 (161)
T ss_pred EEEEECccCc
Confidence 99998 9975
No 90
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.77 E-value=6.9e-05 Score=65.00 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=52.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++||......|.++|.+++++|+|+|+++ .+.++.....++.+.+... + .|+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~--~-------~pi 107 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVCG--N-------IPI 107 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC--C-------CcE
Confidence 44688999999998877888899999999999999986 2344444444444443221 3 789
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++++| +|+.
T Consensus 108 iiv~nK~Dl~ 117 (166)
T cd00877 108 VLCGNKVDIK 117 (166)
T ss_pred EEEEEchhcc
Confidence 99998 9986
No 91
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.76 E-value=0.00011 Score=63.91 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=50.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH-HHHhcCccccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF-DWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF-~~i~n~~~f~~~~~~~~~~~i 298 (341)
...+.+||++||...+..|..++.+++++|||.|+++ ...++.....| ..+... ..+ .|+
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~--~~~-------~pi 107 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRKH--NPK-------API 107 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCC-------CCE
Confidence 3578999999998888889999999999999999987 23444443333 233221 122 688
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++.+| +|+.
T Consensus 108 ilv~nK~Dl~ 117 (173)
T cd04130 108 ILVGTQADLR 117 (173)
T ss_pred EEEeeChhhc
Confidence 88888 9986
No 92
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.75 E-value=8.1e-05 Score=64.20 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=50.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+......|..++.+++++|||.|+++ ...+.+....+..+.... -.+ .|++
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~-------~p~i 112 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIEEHA-SED-------VERM 112 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCC-------CcEE
Confidence 3578999999998888889999999999999999876 122444344444443211 112 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 113 iv~nK~Dl~~ 122 (167)
T cd01867 113 LVGNKCDMEE 122 (167)
T ss_pred EEEECccccc
Confidence 8888 99873
No 93
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.73 E-value=8.3e-05 Score=63.29 Aligned_cols=71 Identities=7% Similarity=0.142 Sum_probs=53.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++++|+|+++ ...+++....+..+.+...-.+ .|++|
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~piii 112 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDE-------FPMIL 112 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCC-------CCEEE
Confidence 578899999998888889999999999999999987 2345555555555554321122 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 113 v~NK~Dl~~ 121 (164)
T cd04145 113 VGNKADLEH 121 (164)
T ss_pred EeeCccccc
Confidence 998 99863
No 94
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.69 E-value=0.00013 Score=62.99 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=51.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||.. ..++.+++++|+|.|+++ .+.+++....++.+.+.....+ .|++|
T Consensus 47 ~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~-------~piil 104 (158)
T cd04103 47 HLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISE-------IPLIL 104 (158)
T ss_pred EEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5689999999953 346788999999999998 5778888888888876543344 78999
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 105 vgnK~Dl~ 112 (158)
T cd04103 105 VGTQDAIS 112 (158)
T ss_pred EeeHHHhh
Confidence 999 6763
No 95
>PLN00023 GTP-binding protein; Provisional
Probab=97.68 E-value=0.00013 Score=70.76 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=52.8
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc-----CccccCC
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE-----VFFCATS 294 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~-----~~~~~~~ 294 (341)
.+.+.+||++||...+..|..||.+++++|+|.|+++- ..++.....++.+.....+. .-... .
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~-~ 150 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGG-L 150 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccC-C
Confidence 46799999999999999999999999999999999972 22333333344444321110 00000 1
Q ss_pred ceeEEEEec-cCccC
Q 019426 295 ALHITAFVA-CEHVS 308 (341)
Q Consensus 295 ~~~iilf~n-~d~~~ 308 (341)
-.||+|.+| +|+..
T Consensus 151 ~ipIILVGNK~DL~~ 165 (334)
T PLN00023 151 PVPYIVIGNKADIAP 165 (334)
T ss_pred CCcEEEEEECccccc
Confidence 268899999 99863
No 96
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.68 E-value=0.00013 Score=62.78 Aligned_cols=75 Identities=8% Similarity=0.100 Sum_probs=50.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++||...+..|..+|.+++++|+|.|+++- ..++........+........ ....|+
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~----~~~~pi 117 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS----------QSFQNLSNWKKEFIYYADVKE----PESFPF 117 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccc----CCCCcE
Confidence 346789999999988889999999999999999998862 223222222233332211100 012788
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|.+| +|+.
T Consensus 118 ilv~nK~Dl~ 127 (170)
T cd04116 118 VVLGNKNDIP 127 (170)
T ss_pred EEEEECcccc
Confidence 98898 9986
No 97
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.67 E-value=0.00013 Score=67.63 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..||.+++++|+|.|+++- +.++..+..|...+... ..+ .|++
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~----------~Sf~~~~~~w~~~i~~~-~~~-------~pii 121 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP----------ETVDSALKKWKAEIMDY-CPS-------TRIL 121 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 46899999999988888899999999999999999972 34444433333222211 012 6888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+-
T Consensus 122 lVgNK~DL~ 130 (232)
T cd04174 122 LIGCKTDLR 130 (232)
T ss_pred EEEECcccc
Confidence 8888 9974
No 98
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.66 E-value=0.00015 Score=64.02 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=50.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..+..+|.+++++|+|.|+++ ...++..+..|...+... ..+ .|++
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~-~~~-------~~ii 109 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF-CPN-------TKVL 109 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH-CCC-------CCEE
Confidence 4678999999998888888889999999999999987 233444433333322211 012 6889
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+.
T Consensus 110 lVgnK~DL~ 118 (178)
T cd04131 110 LVGCKTDLR 118 (178)
T ss_pred EEEEChhhh
Confidence 9998 9975
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.66 E-value=0.00017 Score=61.88 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=50.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC---ccccCccccCCce
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEVFFCATSAL 296 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~---~~f~~~~~~~~~~ 296 (341)
...+.+||++|+......|..++.+++++|||+|+++- ..+++....++.+... ....+ .
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-------~ 110 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP----------KSFESLDSWRDEFLIQASPSDPEN-------F 110 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCccCCCC-------c
Confidence 35688999999988888999999999999999998851 2333333333333221 11123 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 111 p~ilv~nK~Dl~ 122 (172)
T cd01862 111 PFVVLGNKIDLE 122 (172)
T ss_pred eEEEEEECcccc
Confidence 8888888 9998
No 100
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=8.2e-05 Score=66.54 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=59.3
Q ss_pred ccccCeEEE--EeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426 200 VRTTGVVEI--QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (341)
Q Consensus 200 ~~T~Gi~e~--~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF 277 (341)
..|.||.-. .+.. .-..+++.+||..||...|..-.+||.++++||||-|+++ ..-|
T Consensus 39 ~sTIGVDf~~rt~e~----~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~-----------------~~SF 97 (205)
T KOG0084|consen 39 ISTIGVDFKIRTVEL----DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK-----------------QESF 97 (205)
T ss_pred cceeeeEEEEEEeee----cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc-----------------HHHh
Confidence 567776532 2210 2345789999999999999999999999999999999997 3333
Q ss_pred HHHhcCccccCccc-cCCceeEEEEec-cCccCc
Q 019426 278 DWVLKQPCFEVFFC-ATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 278 ~~i~n~~~f~~~~~-~~~~~~iilf~n-~d~~~~ 309 (341)
+.|-. |+...-. .++-+|++|..| ||+..+
T Consensus 98 ~~v~~--Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 98 NNVKR--WIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred hhHHH--HHHHhhhhccCCCCeEEEeeccccHhh
Confidence 33322 3332111 112268899999 999743
No 101
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.65 E-value=0.00016 Score=62.49 Aligned_cols=70 Identities=11% Similarity=0.203 Sum_probs=52.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||.+|+...+..+.+++.+++++|||+|+++ .+.+......+..+.... -.+ .|++
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~pvi 113 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSN-------MTIM 113 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CcEE
Confidence 4679999999998878888899999999999999986 244555555555554431 122 7888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+.+| .|+.
T Consensus 114 vv~nK~Dl~ 122 (168)
T cd01866 114 LIGNKCDLE 122 (168)
T ss_pred EEEECcccc
Confidence 8888 9987
No 102
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.62 E-value=0.00018 Score=61.69 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=51.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+.-|.+++.+++++++|+|+++. ..+++....++.+.... -.+ .|+++
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~iv 113 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR----------SSFESVPHWIEEVEKYG-ASN-------VVLLL 113 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCC-------CcEEE
Confidence 5789999999988888899999999999999999872 33444444445443321 112 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 114 v~nK~Dl~~ 122 (165)
T cd01864 114 IGNKCDLEE 122 (165)
T ss_pred EEECccccc
Confidence 898 99873
No 103
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.61 E-value=0.00024 Score=62.70 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=50.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..+|.+++++|||+|+++. ..+++.....+.+.+.. .+ .|++|
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~~--~~-------~piil 110 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDS----------SSFERAKFWVKELQNLE--EH-------CKIYL 110 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhcC--CC-------CCEEE
Confidence 5678999999988888899999999999999999872 33444333344443321 12 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 v~nK~Dl~~ 119 (193)
T cd04118 111 CGTKSDLIE 119 (193)
T ss_pred EEEcccccc
Confidence 888 99863
No 104
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.59 E-value=0.0002 Score=62.51 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=50.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++||...+..|..+|.+++++|+|.|+++- .-+.......+.+.....-.+ .|+++
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~~iil 111 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV----------ASLEHTRQWLEDALKENDPSS-------VLLFL 111 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CeEEE
Confidence 5789999999988888999999999999999999861 223333333444433221122 67888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| .|+..
T Consensus 112 VgnK~Dl~~ 120 (170)
T cd04108 112 VGTKKDLSS 120 (170)
T ss_pred EEEChhcCc
Confidence 888 99753
No 105
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.59 E-value=0.00026 Score=62.66 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=49.9
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|..++.+++++++|+|+++- ..+++....++.+..... +..||
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~----------~s~~~i~~~~~~~~~~~~--------~~~pi- 108 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK----------STLNSIKEWYRQARGFNK--------TAIPI- 108 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCC--------CCCEE-
Confidence 36789999999998889999999999999999999872 345555454554433210 12565
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+.
T Consensus 109 lVgnK~Dl~ 117 (182)
T cd04128 109 LVGTKYDLF 117 (182)
T ss_pred EEEEchhcc
Confidence 4467 9986
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.55 E-value=0.00025 Score=64.27 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=34.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+.+||++||...+..|..+|.+++++|+|.|+++
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence 4679999999999888899999999999999999997
No 107
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.55 E-value=0.00028 Score=60.73 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=51.2
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCce
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSAL 296 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~~ 296 (341)
....+.+||++||...+..|..++.+++++|+|.|+++ ...+++....++.+.... ...+ .
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~-------~ 109 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEK-------I 109 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCC-------C
Confidence 44678999999998888888889999999999999986 223333333333332211 1122 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|++|.+| +|+..
T Consensus 110 piilv~nK~Dl~~ 122 (165)
T cd04140 110 PIMLVGNKCDESH 122 (165)
T ss_pred CEEEEEECccccc
Confidence 8899998 99874
No 108
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.54 E-value=0.00023 Score=64.48 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=51.0
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++|||+|+++- +.++.....++.+.....-. ....|++
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~----------~s~~~~~~w~~~l~~~~~~~-----~~~~pii 113 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS----------QSFENLEDWYSMVRKVLKSS-----ETQPLVV 113 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccc-----CCCceEE
Confidence 46789999999988888899999999999999999972 34444433333333221000 0125788
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|..| +|+..
T Consensus 114 lVgNK~DL~~ 123 (215)
T cd04109 114 LVGNKTDLEH 123 (215)
T ss_pred EEEECccccc
Confidence 8888 99873
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.52 E-value=0.00023 Score=60.67 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=51.0
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|.+++++++++|||+|+++- ..+.+....++.+.... .+ .|++
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~-------~p~i 111 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK----------ASFENCSRWVNKVRTAS--KH-------MPGV 111 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CC-------CCEE
Confidence 36789999999988888899999999999999999862 22333333333333221 22 6788
Q ss_pred EEec-cCccCcc
Q 019426 300 AFVA-CEHVSGM 310 (341)
Q Consensus 300 lf~n-~d~~~~~ 310 (341)
+.+| +|+..+.
T Consensus 112 lv~nK~Dl~~~~ 123 (164)
T cd04101 112 LVGNKMDLADKA 123 (164)
T ss_pred EEEECccccccc
Confidence 8888 9987443
No 110
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.51 E-value=8.4e-05 Score=66.30 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=56.7
Q ss_pred CceeEEEecCCccccccccccc---cCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 220 GEVYRLFDVGGQRNERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~---f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
+..++++|+.|+...|.+.... ..++.+||||||.+.+ ...+.+.-+.+..|+..+...+ ...
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~-----~~~ 113 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQK-----NKP 113 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCT-----T--
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhcc-----CCC
Confidence 3568999999998888876665 7789999999999864 2347888888888888765432 248
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
||+|++| .|++
T Consensus 114 piLIacNK~Dl~ 125 (181)
T PF09439_consen 114 PILIACNKQDLF 125 (181)
T ss_dssp EEEEEEE-TTST
T ss_pred CEEEEEeCcccc
Confidence 9999999 9998
No 111
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.50 E-value=0.00027 Score=60.65 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=48.8
Q ss_pred CceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc-ccCccccCCcee
Q 019426 220 GEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEVFFCATSALH 297 (341)
Q Consensus 220 ~~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~-f~~~~~~~~~~~ 297 (341)
.+.+.+||++|+.. ....+..++.+++++|+|+|+++- ..++......+.+..... -.+ .|
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-------~p 108 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR----------SSFDEISQLKQLIREIKKRDRE-------IP 108 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCC-------CC
Confidence 45789999999975 345678889999999999999972 334444333333332211 123 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++++| +|+..
T Consensus 109 iilv~nK~Dl~~ 120 (165)
T cd04146 109 VILVGNKADLLH 120 (165)
T ss_pred EEEEEECCchHH
Confidence 899998 99753
No 112
>PLN03118 Rab family protein; Provisional
Probab=97.50 E-value=0.00026 Score=63.91 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=51.8
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~~~~~~i 298 (341)
...+.+||++||...+..|..++.+++++|+|+|+++ ...+.+....|...+.. ....+ .|+
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~~~~~~~~~-------~~~ 123 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEVELYSTNQD-------CVK 123 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence 3578999999999888999999999999999999987 23344444445444431 11122 577
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 124 ilv~NK~Dl~~ 134 (211)
T PLN03118 124 MLVGNKVDRES 134 (211)
T ss_pred EEEEECccccc
Confidence 88888 99863
No 113
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.46 E-value=0.00034 Score=59.80 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=49.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++ .+.+++....+..+.... ..+ .|+++
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~pi~v 113 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELRDHA-DSN-------IVIML 113 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence 578999999998878888999999999999999996 233444444444443321 112 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 114 v~nK~Dl~ 121 (165)
T cd01868 114 VGNKSDLR 121 (165)
T ss_pred EEECcccc
Confidence 888 9986
No 114
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.44 E-value=0.00054 Score=59.12 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=50.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH-HHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF-DWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF-~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||++||...+..|..++.+++++|+|+|+++ ...+++....| ..+... ..+ .|++
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~-------~pii 106 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPN-------TPII 106 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCC-------CCEE
Confidence 568999999998888888889999999999999986 23344433322 333221 123 7899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 107 lv~nK~Dl~~ 116 (174)
T smart00174 107 LVGTKLDLRE 116 (174)
T ss_pred EEecChhhhh
Confidence 9998 99874
No 115
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.44 E-value=0.00023 Score=64.59 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=52.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++||...+..|..++.+++++|+|+|+++ .+.+++....++.+.....-. ..|++|
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i~~~~~~~-------~~~iil 114 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEARSHIQPH-------RPVFIL 114 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCC-------CCeEEE
Confidence 468999999999888889999999999999999987 244555555555554332111 267778
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 115 vgNK~Dl~~ 123 (211)
T cd04111 115 VGHKCDLES 123 (211)
T ss_pred EEEcccccc
Confidence 888 99863
No 116
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.39 E-value=0.00042 Score=58.72 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=47.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||++||...+..+..++.+++++|||+|+++ ....++...+..+ . .. + ..|++
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~--~~-~------~~~~i 108 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-E--LL-G------IKRGL 108 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-H--Hh-C------CCcEE
Confidence 5689999999998777777778889999999999875 1233344333321 1 11 1 14788
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 109 lv~NK~Dl~~ 118 (164)
T cd04171 109 VVLTKADLVD 118 (164)
T ss_pred EEEECccccC
Confidence 8888 99974
No 117
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.36 E-value=0.0005 Score=58.38 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=49.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++++|.|+++- ..+.......+.+ . ....+ .|++
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~l~~~~~~~-~-~~~~~-------~p~i 110 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDR----------ESFEAIESWKEKV-E-AECGD-------IPMV 110 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHH-H-HhCCC-------CCEE
Confidence 56899999999988888899999999999999999862 2232222222222 1 11123 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 111 iv~nK~Dl~~ 120 (162)
T cd04106 111 LVQTKIDLLD 120 (162)
T ss_pred EEEEChhccc
Confidence 8888 99874
No 118
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.35 E-value=0.00032 Score=61.52 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=50.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++||...+..|..++.+++++|||+|+++ .+.+++....|-..+... -.+ .|++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~piil 110 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF-CPG-------TPIML 110 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEEE
Confidence 468899999998888889999999999999999987 234554443332222211 112 68899
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 111 v~nK~Dl~~ 119 (187)
T cd04132 111 VGLKTDLRK 119 (187)
T ss_pred EEeChhhhh
Confidence 998 99874
No 119
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.34 E-value=0.00086 Score=57.83 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=48.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++ ...+++....|...+... ..+ .|+++
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~-------~piiv 109 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APN-------VPYLL 109 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCC-------CCEEE
Confidence 467899999998888889999999999999999886 223333333332222211 122 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
+.| +|+..
T Consensus 110 v~nK~Dl~~ 118 (174)
T cd04135 110 VGTQIDLRD 118 (174)
T ss_pred EeEchhhhc
Confidence 888 99863
No 120
>PLN03108 Rab family protein; Provisional
Probab=97.34 E-value=0.00069 Score=61.27 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=51.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..++.....+..+.... -.+ .|++
T Consensus 54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~----------~s~~~l~~~~~~~~~~~-~~~-------~pii 115 (210)
T PLN03108 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHA-NAN-------MTIM 115 (210)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence 35789999999988888899999999999999999872 34444334344443221 112 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 116 iv~nK~Dl~~ 125 (210)
T PLN03108 116 LIGNKCDLAH 125 (210)
T ss_pred EEEECccCcc
Confidence 8888 99864
No 121
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.32 E-value=0.00097 Score=57.55 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=48.9
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++++|.|+++- ..++.....|...+.. ...+ .|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~pii 109 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPN-------VPII 109 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-hCCC-------CCEE
Confidence 45789999999988888888899999999999998862 1222222222222221 1123 7889
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
+.+| +|+...
T Consensus 110 lv~nK~Dl~~~ 120 (175)
T cd01870 110 LVGNKKDLRND 120 (175)
T ss_pred EEeeChhcccC
Confidence 9988 998743
No 122
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.30 E-value=0.00079 Score=57.67 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..+.+||++|+...+..|..++..++++|+|+|+++
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 568899999998888899999999999999999885
No 123
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00066 Score=61.67 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=58.9
Q ss_pred ccCCceeEEEecCCccccccccccccC---CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT 293 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~---~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~ 293 (341)
..++-..+++|+.|....|.|-..+|. .+.+||||||.+.|+. |-=+-|.-+|+-+.++.-.++
T Consensus 78 r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k--------~vrdvaefLydil~~~~~~~~----- 144 (238)
T KOG0090|consen 78 RLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLK--------NVRDVAEFLYDILLDSRVKKN----- 144 (238)
T ss_pred eecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccch--------hhHHHHHHHHHHHHhhccccC-----
Confidence 455666899999999999999999998 7999999999999853 333334445555555554444
Q ss_pred CceeEEEEec-cCcc
Q 019426 294 SALHITAFVA-CEHV 307 (341)
Q Consensus 294 ~~~~iilf~n-~d~~ 307 (341)
..||+|-+| .|++
T Consensus 145 -~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 145 -KPPVLIACNKQDLF 158 (238)
T ss_pred -CCCEEEEecchhhh
Confidence 378899999 8987
No 124
>PLN03110 Rab GTPase; Provisional
Probab=97.26 E-value=0.00087 Score=60.93 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=49.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+.+||++||...+..|.+++.+++++|||+|+++- ..++.....++.+-... -.+ .|++
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii 121 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVQRWLRELRDHA-DSN-------IVIM 121 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC-CCC-------CeEE
Confidence 36899999999998889999999999999999999862 22322222333332211 112 6888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+.+| +|+.
T Consensus 122 iv~nK~Dl~ 130 (216)
T PLN03110 122 MAGNKSDLN 130 (216)
T ss_pred EEEEChhcc
Confidence 8888 9975
No 125
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.21 E-value=0.0013 Score=60.14 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=48.1
Q ss_pred CCceeEEEecCCccccccccccccC-CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~-~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
....+.+||++|+. ...-..|+. +++++|+|+|+++ ...+....+.+..+.......+ .|
T Consensus 48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~-------~p 108 (221)
T cd04148 48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLED-------RP 108 (221)
T ss_pred EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CC
Confidence 45678999999997 111133555 9999999999997 2335555555555554332233 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
++|++| +|+..
T Consensus 109 iilV~NK~Dl~~ 120 (221)
T cd04148 109 IILVGNKSDLAR 120 (221)
T ss_pred EEEEEEChhccc
Confidence 999998 99863
No 126
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.19 E-value=0.0012 Score=59.24 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=45.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+++.+||..||.. .....+|.+++++|+|.|+++ ...++.....|...+... ..+ .|++
T Consensus 65 ~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~-~~~-------~pii 124 (195)
T cd01873 65 SVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF-CPR-------VPVI 124 (195)
T ss_pred EEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 46899999988853 122347999999999999997 234544443343322211 112 6889
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|.+| +|+.
T Consensus 125 lvgNK~DL~ 133 (195)
T cd01873 125 LVGCKLDLR 133 (195)
T ss_pred EEEEchhcc
Confidence 9998 9975
No 127
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.17 E-value=0.00085 Score=59.63 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=50.2
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
..++..+.+||++|+...+..|..++.+++++|+|+|.++- .......++..+.. .+ .
T Consensus 61 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~----~~-------~ 118 (194)
T cd01891 61 TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALE----LG-------L 118 (194)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cC-------C
Confidence 44567899999999998888999999999999999999861 01222233333322 12 5
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 119 p~iiv~NK~Dl~ 130 (194)
T cd01891 119 KPIVVINKIDRP 130 (194)
T ss_pred CEEEEEECCCCC
Confidence 7788888 9986
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.17 E-value=0.00068 Score=58.74 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=48.2
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||++|+...+..|..++.+++++|+|+|.++-.+ .+++..+..+.. .+ .|++
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-----------~~~~~~~~~~~~----~~-------~~ii 123 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-----------AQTLANFYLALE----NN-------LEII 123 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-----------HhhHHHHHHHHH----cC-------CCEE
Confidence 4678999999999889999999999999999999986311 122333332222 12 5788
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+++| +|+.
T Consensus 124 iv~NK~Dl~ 132 (179)
T cd01890 124 PVINKIDLP 132 (179)
T ss_pred EEEECCCCC
Confidence 8888 9976
No 129
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.15 E-value=0.001 Score=56.72 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=49.0
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||++|+...+..|..++..++++++|+|.++.+ ..++...+..+.. .+ .|+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~-------~p~ 105 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----AN-------VPF 105 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cC-------CCE
Confidence 4678999999999888888998999999999999998742 1223333332221 12 578
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++++| +|+.
T Consensus 106 ivv~NK~Dl~ 115 (168)
T cd01887 106 IVALNKIDKP 115 (168)
T ss_pred EEEEEceecc
Confidence 88888 9986
No 130
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.13 E-value=0.0016 Score=58.49 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=49.7
Q ss_pred ceeEEEecCCccc----ccccc----ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc--ccCcc
Q 019426 221 EVYRLFDVGGQRN----ERRKW----IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEVFF 290 (341)
Q Consensus 221 ~~~~l~DvgGqr~----eR~kW----~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~--f~~~~ 290 (341)
..+.+||++|+.. .+..| ..++.+++++|||+|+++ ...++....+.+.+.+... ..+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~-- 116 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKE-- 116 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCC--
Confidence 5788999999642 22333 345789999999999986 3456666666677766432 223
Q ss_pred ccCCceeEEEEec-cCcc
Q 019426 291 CATSALHITAFVA-CEHV 307 (341)
Q Consensus 291 ~~~~~~~iilf~n-~d~~ 307 (341)
.|++|.+| +|+.
T Consensus 117 -----~piiivgNK~Dl~ 129 (198)
T cd04142 117 -----PPIVVVGNKRDQQ 129 (198)
T ss_pred -----CCEEEEEECcccc
Confidence 78999999 9996
No 131
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.06 E-value=0.00053 Score=62.56 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=42.0
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.-|.-.....| .+++.++.++|++|++..++.|......++++|||||.++
T Consensus 62 g~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 62 GVTIDVGLAKF------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred ccCeecceEEE------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 33444555667 6778899999999998888888888889999999999986
No 132
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.04 E-value=0.0014 Score=55.67 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=49.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+......+..++.+++++|+|.|+++ .+.++.....+..+-.... .+ .|+
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~-~~-------~~i 107 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKP-ED-------IPI 107 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHST-TT-------SEE
T ss_pred cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc-cc-------ccc
Confidence 34679999999997666667788999999999999987 2334443333333322111 12 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 108 ivvg~K~D~~~ 118 (162)
T PF00071_consen 108 IVVGNKSDLSD 118 (162)
T ss_dssp EEEEETTTGGG
T ss_pred eeeeccccccc
Confidence 88887 99874
No 133
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.89 E-value=0.0027 Score=58.86 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=59.5
Q ss_pred ccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (341)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF 277 (341)
.|.-|.......+ .+++..+.+||++|+......|..++..++++|+|+|.++- -......++
T Consensus 47 ~rg~ti~~~~~~~------~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-----------~~~~~~~~~ 109 (237)
T cd04168 47 QRGITIFSAVASF------QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-----------VQAQTRILW 109 (237)
T ss_pred hCCCceeeeeEEE------EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHH
Confidence 3445555566666 67889999999999988888899999999999999998862 112333444
Q ss_pred HHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426 278 DWVLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 278 ~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
+.+-. .+ .|+++|+| +|+.
T Consensus 110 ~~~~~----~~-------~P~iivvNK~D~~ 129 (237)
T cd04168 110 RLLRK----LN-------IPTIIFVNKIDRA 129 (237)
T ss_pred HHHHH----cC-------CCEEEEEECcccc
Confidence 43322 13 68889999 9986
No 134
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.86 E-value=0.0041 Score=56.09 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
+.+.+.+||++|+...+..|..++.+++++|+|.|+++- ..+.+....+..+... ..+ .|+
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~-------~~i 116 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR----------ITYKNVPNWHRDIVRV--CEN-------IPI 116 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCC-------CCE
Confidence 457899999999988888899999999999999999862 3344433333333321 123 678
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
++.+| +|+.
T Consensus 117 ~lv~nK~Dl~ 126 (215)
T PTZ00132 117 VLVGNKVDVK 126 (215)
T ss_pred EEEEECccCc
Confidence 87888 8875
No 135
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0035 Score=56.29 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=60.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.+.+++||..||...|..-..|+.+..++|-|-|+++ .|-++....-.+.+.+.+--.+ ..|+
T Consensus 70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~----------~~Sfe~t~kWi~dv~~e~gs~~-------viI~ 132 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD----------RNSFENTSKWIEDVRRERGSDD-------VIIF 132 (221)
T ss_pred EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----------cchHHHHHHHHHHHHhccCCCc-------eEEE
Confidence 4779999999999999999999999999999999998 6888888888888887654322 4555
Q ss_pred EEec-cCccCcc
Q 019426 300 AFVA-CEHVSGM 310 (341)
Q Consensus 300 lf~n-~d~~~~~ 310 (341)
|..| .|++.+.
T Consensus 133 LVGnKtDL~dkr 144 (221)
T KOG0094|consen 133 LVGNKTDLSDKR 144 (221)
T ss_pred EEcccccccchh
Confidence 6668 9987554
No 136
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.82 E-value=0.0038 Score=57.88 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred cCCceeEEEecCCccccc-----cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCcccc
Q 019426 218 KSGEVYRLFDVGGQRNER-----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCA 292 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR-----~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~ 292 (341)
.+.+.+.+||+|||...- ....+.|++|.++|||+|...- ...+++.-|...+..-+-.+
T Consensus 45 ~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~-----------~~~~~l~~~~~~i~~l~~~s---- 109 (232)
T PF04670_consen 45 LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD-----------DYDEDLAYLSDCIEALRQYS---- 109 (232)
T ss_dssp TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S-----------TCHHHHHHHHHHHHHHHHHS----
T ss_pred CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc-----------cHHHHHHHHHHHHHHHHHhC----
Confidence 456799999999996432 2346679999999999998831 14555555555544311111
Q ss_pred CCceeEEEEec-cCccCc
Q 019426 293 TSALHITAFVA-CEHVSG 309 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~~ 309 (341)
+-.++-+|.. .|.++.
T Consensus 110 -p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 110 -PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp -TT-EEEEEEE-CCCS-H
T ss_pred -CCCeEEEEEeecccCCH
Confidence 1266778886 999843
No 137
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.82 E-value=0.0022 Score=55.22 Aligned_cols=73 Identities=5% Similarity=0.057 Sum_probs=49.8
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||.+|+...+..|..++.+++++++|+|+++- ..++.....|...+.... .+ .|++
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~~-~~-------~pvi 107 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP----------STLERIRTKWLPLIRRLG-VK-------VPII 107 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CC-------CCEE
Confidence 35789999999988888898899999999999998862 223332222222222110 13 7889
Q ss_pred EEec-cCccCcc
Q 019426 300 AFVA-CEHVSGM 310 (341)
Q Consensus 300 lf~n-~d~~~~~ 310 (341)
+.+| +|+....
T Consensus 108 iv~nK~Dl~~~~ 119 (166)
T cd01893 108 LVGNKSDLRDGS 119 (166)
T ss_pred EEEEchhccccc
Confidence 8888 9997433
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.80 E-value=0.003 Score=54.68 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=49.8
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+..+.+||++|+...+..|.+++.++++++||+|.++.. .......+..+.. .+ .|
T Consensus 59 ~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~----~~-------~~ 116 (189)
T cd00881 59 WPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-----------QPQTREHLRIARE----GG-------LP 116 (189)
T ss_pred eCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-----------cHHHHHHHHHHHH----CC-------CC
Confidence 34568999999999888889999999999999999987521 1122222222221 23 68
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++++| +|++.
T Consensus 117 i~iv~nK~D~~~ 128 (189)
T cd00881 117 IIVAINKIDRVG 128 (189)
T ss_pred eEEEEECCCCcc
Confidence 888888 99984
No 139
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.0019 Score=58.34 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=52.6
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC-Ccee
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT-SALH 297 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~-~~~~ 297 (341)
..+.+++||.+||...|..-..||.++.+|+-|+|+++ ..-|+.+.+ |++..=-+. +.++
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn-----------------e~Sfeni~~--W~~~I~e~a~~~v~ 119 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN-----------------EKSFENIRN--WIKNIDEHASDDVV 119 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc-----------------hHHHHHHHH--HHHHHHhhCCCCCc
Confidence 45789999999999999999999999999999999997 223333333 333211111 2478
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
++|..| ||+-.
T Consensus 120 ~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 120 KILVGNKCDLEE 131 (207)
T ss_pred EEEeeccccccc
Confidence 899999 99984
No 140
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.70 E-value=0.0035 Score=59.21 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=41.0
Q ss_pred cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
|..|.......| .+++.++.+||++|+......+..++..++++|+|+|.++
T Consensus 55 rg~si~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 55 RGISVTSSVMQF------EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred CCCCeEEEEEEE------eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC
Confidence 344445555667 7888999999999997666656667899999999999875
No 141
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.69 E-value=0.0045 Score=50.97 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy 257 (341)
..+.+||++|+...+..|..++.++.++++++|++.+
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~ 86 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL 86 (161)
T ss_pred EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee
Confidence 6789999999998999999899999999999998864
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.66 E-value=0.0046 Score=60.36 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCceeEEEecCCcc-------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcc
Q 019426 219 SGEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFF 290 (341)
Q Consensus 219 ~~~~~~l~DvgGqr-------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~ 290 (341)
.+.+|.+||++|.. ..+..|..+++.++++|||+|+++.+ .+++-..+.+.+... +.+.+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~----------s~e~~~~~~~EL~~~~~~L~~-- 271 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD----------PVEDYKTIRNELEKYSPELAD-- 271 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC----------CHHHHHHHHHHHHHhhhhccc--
Confidence 34679999999973 24567777888999999999999742 122222222333221 33344
Q ss_pred ccCCceeEEEEec-cCccCc
Q 019426 291 CATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 291 ~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++.+| +|++..
T Consensus 272 -----kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 272 -----KPRILVLNKIDLLDE 286 (335)
T ss_pred -----CCeEEEEECcccCCc
Confidence 78899998 998743
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.64 E-value=0.0061 Score=51.21 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=45.6
Q ss_pred ccCCceeEEEecCCcccccc------ccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERR------KWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~------kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+.+..+.+||++|+..... .|..++. +++++|+|+|.++.++ ....+..+... +
T Consensus 39 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------------~~~~~~~~~~~----~ 101 (158)
T cd01879 39 KLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER-------------NLYLTLQLLEL----G 101 (158)
T ss_pred eeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh-------------HHHHHHHHHHc----C
Confidence 44567899999999975443 2566664 9999999999886321 12233333321 2
Q ss_pred ccccCCceeEEEEec-cCccC
Q 019426 289 FFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~ 308 (341)
.|+++++| +|+..
T Consensus 102 -------~~~iiv~NK~Dl~~ 115 (158)
T cd01879 102 -------LPVVVALNMIDEAE 115 (158)
T ss_pred -------CCEEEEEehhhhcc
Confidence 68888888 99873
No 144
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.63 E-value=0.0048 Score=52.84 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=46.8
Q ss_pred CceeEEEecCCcc----cccc---ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc------c
Q 019426 220 GEVYRLFDVGGQR----NERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC------F 286 (341)
Q Consensus 220 ~~~~~l~DvgGqr----~eR~---kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~------f 286 (341)
+..+.+||++|+. ..+. .|..++.++++++||+|.++.+.. ...+.+.+.......+..... +
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLL 118 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6789999999972 1222 344457789999999999874200 001233333333344433221 1
Q ss_pred cCccccCCceeEEEEec-cCccCc
Q 019426 287 EVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 287 ~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.+ .|+++.+| +|+...
T Consensus 119 ~~-------~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 119 TA-------KPVIYVLNKIDLDDA 135 (176)
T ss_pred hh-------CCeEEEEEchhcCch
Confidence 23 68888888 999744
No 145
>PRK08118 topology modulation protein; Reviewed
Probab=96.61 E-value=0.0011 Score=58.06 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
||+|+|++||||||+++++.-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 146
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.60 E-value=0.0086 Score=54.04 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=67.1
Q ss_pred CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426 186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE 265 (341)
Q Consensus 186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~ 265 (341)
.+|.||.+|..+- +..+ .-....+.++|.+||.....-=.+|..+.++.+.|.|+++
T Consensus 30 ~~y~ptied~y~k--------~~~v------~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd--------- 86 (196)
T KOG0395|consen 30 EDYDPTIEDSYRK--------ELTV------DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD--------- 86 (196)
T ss_pred cccCCCccccceE--------EEEE------CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC---------
Confidence 4599999975331 1222 2233568899999975544444556778899999999998
Q ss_pred CccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426 266 QKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 266 ~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
..-+++...+.+.|...+.-.+ .|++|..| +|+.
T Consensus 87 -~~SF~~~~~l~~~I~r~~~~~~-------~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 87 -RSSFEEAKQLREQILRVKGRDD-------VPIILVGNKCDLE 121 (196)
T ss_pred -HHHHHHHHHHHHHHHHhhCcCC-------CCEEEEEEcccch
Confidence 5779999999999966665544 89999999 9998
No 147
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.53 E-value=0.005 Score=58.27 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=57.8
Q ss_pred cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (341)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~ 278 (341)
|.-|.-.....| .+++..+.++|++|.......|..++..++++|||||.++-- ......+++
T Consensus 48 rgiti~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~~t~~~~~ 110 (270)
T cd01886 48 RGITIQSAATTC------FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EPQTETVWR 110 (270)
T ss_pred CCcCeeccEEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CHHHHHHHH
Confidence 333444445566 678899999999999878888999999999999999988631 122334444
Q ss_pred HHhcCccccCccccCCceeEEEEec-cCcc
Q 019426 279 WVLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
.+.. .+ .|+++|+| +|+.
T Consensus 111 ~~~~----~~-------~p~ivviNK~D~~ 129 (270)
T cd01886 111 QADR----YN-------VPRIAFVNKMDRT 129 (270)
T ss_pred HHHH----cC-------CCEEEEEECCCCC
Confidence 3322 12 67889999 9987
No 148
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.0017 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+|.|++||||||+++++.-.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999986543
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=96.45 E-value=0.0059 Score=54.21 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=46.4
Q ss_pred eeEEEecCC-----------ccccccccccccC----CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426 222 VYRLFDVGG-----------QRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (341)
Q Consensus 222 ~~~l~DvgG-----------qr~eR~kW~~~f~----~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f 286 (341)
.+.+||++| |...|..|.+++. .++.+++|+|.+++.+....-...+.+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 589999999 5556667777764 467899999988764321100011223333444443332
Q ss_pred cCccccCCceeEEEEec-cCccC
Q 019426 287 EVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 287 ~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
.+ .|+++++| +|+..
T Consensus 129 ~~-------~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 129 LG-------IPPIVAVNKMDKIK 144 (201)
T ss_pred cC-------CCeEEEEECccccC
Confidence 13 68888888 99863
No 150
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0017 Score=57.82 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
||+|+|++||||||+++++.-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 151
>PRK07261 topology modulation protein; Provisional
Probab=96.44 E-value=0.0017 Score=57.15 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
||+|+|++||||||+++++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999863
No 152
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.017 Score=51.66 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=51.9
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
.++|.+||.+||...+..=.-||.+++|.|-|-|+.+. .-+..++.-+..+=..-- .+ .-|-
T Consensus 53 ~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~----------~SF~~aK~WvkeL~~~~~-~~-------~via 114 (200)
T KOG0092|consen 53 TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE----------ESFEKAKNWVKELQRQAS-PN-------IVIA 114 (200)
T ss_pred EEEEEEEEcCCcccccccccceecCCcEEEEEEecccH----------HHHHHHHHHHHHHHhhCC-CC-------eEEE
Confidence 47888999999988777777899999999999999983 446666666666544321 22 3334
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|..| +|+..
T Consensus 115 lvGNK~DL~~ 124 (200)
T KOG0092|consen 115 LVGNKADLLE 124 (200)
T ss_pred Eecchhhhhh
Confidence 5558 99984
No 153
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.37 E-value=0.016 Score=49.38 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=46.9
Q ss_pred ccCCceeEEEecCCccc----ccccccc-----ccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426 217 KKSGEVYRLFDVGGQRN----ERRKWIH-----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~----eR~kW~~-----~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~ 287 (341)
...+..+.+||++|+.. ++..|.. +....+++|||+|.++... -.+++...++..+.. .+.
T Consensus 43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~~~~l~~--~~~ 112 (168)
T cd01897 43 DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSLFEEIKP--LFK 112 (168)
T ss_pred ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHHHHHHHh--hcC
Confidence 45567899999999842 2222211 1123579999999986311 123444555555533 123
Q ss_pred CccccCCceeEEEEec-cCccCcc
Q 019426 288 VFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 288 ~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
+ .|+++.+| +|+....
T Consensus 113 ~-------~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 113 N-------KPVIVVLNKIDLLTFE 129 (168)
T ss_pred c-------CCeEEEEEccccCchh
Confidence 4 78999998 9997543
No 154
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.29 E-value=0.0089 Score=53.13 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=52.3
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||..||...+..|.-+++++.+.|++||.++= ..+ ++..+.+-+-... ..|+
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~---------~~~--~a~~ii~f~~~~~----------~ip~ 124 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP---------ITF--HAEEIIDFLTSRN----------PIPV 124 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC---------cch--HHHHHHHHHhhcc----------CCCE
Confidence 347899999999999999999999999999999999971 122 4444433322211 1689
Q ss_pred EEEec-cCccCc
Q 019426 299 TAFVA-CEHVSG 309 (341)
Q Consensus 299 ilf~n-~d~~~~ 309 (341)
++++| .|++..
T Consensus 125 vVa~NK~DL~~a 136 (187)
T COG2229 125 VVAINKQDLFDA 136 (187)
T ss_pred EEEeeccccCCC
Confidence 99999 999844
No 155
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.23 E-value=0.0037 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++|.|++||||||++|++-.+-
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 68999999999999999998654
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=96.22 E-value=0.011 Score=57.50 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=47.4
Q ss_pred ceeEEEecCCcc-------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc-CccccCcccc
Q 019426 221 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEVFFCA 292 (341)
Q Consensus 221 ~~~~l~DvgGqr-------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n-~~~f~~~~~~ 292 (341)
..+.+||++|+. ..+..|..+.+.++++|||+|+++.+. .+-+++-..+.+.+.. .+.+.+
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~~EL~~~~~~l~~---- 273 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIRNELKKYSPELAE---- 273 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHHHHHHHhhhhhcc----
Confidence 689999999984 244567777788999999999997521 1111111112222222 123334
Q ss_pred CCceeEEEEec-cCccCc
Q 019426 293 TSALHITAFVA-CEHVSG 309 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~~ 309 (341)
.|++|.+| +|++..
T Consensus 274 ---kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 274 ---KPRIVVLNKIDLLDE 288 (329)
T ss_pred ---CCEEEEEeCccCCCh
Confidence 78888898 999744
No 157
>PRK10218 GTP-binding protein; Provisional
Probab=96.19 E-value=0.01 Score=62.33 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=52.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++.++.+||+.|+...+.-|..++..++++|+|+|.++- .+......+..+.. .+ .
T Consensus 64 ~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-----------~~~qt~~~l~~a~~----~g-------i 121 (607)
T PRK10218 64 KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-----------PMPQTRFVTKKAFA----YG-------L 121 (607)
T ss_pred ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-----------ccHHHHHHHHHHHH----cC-------C
Confidence 67789999999999999889999999999999999998852 13334444444333 13 5
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 122 p~IVviNKiD~~ 133 (607)
T PRK10218 122 KPIVVINKVDRP 133 (607)
T ss_pred CEEEEEECcCCC
Confidence 6788888 9986
No 158
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.19 E-value=0.014 Score=49.73 Aligned_cols=74 Identities=8% Similarity=0.113 Sum_probs=42.8
Q ss_pred ceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426 221 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT 293 (341)
Q Consensus 221 ~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~ 293 (341)
..+.+||++|+.. .++.|...+++++++|||+|.++-++ ....+..-.+.+.... +.+.+
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~------~~~~~~~~~~~l~~~~--~~~~~----- 114 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDD------PVEDYKTIRNELELYN--PELLE----- 114 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCC------HHHHHHHHHHHHHHhC--ccccc-----
Confidence 3799999999731 12334444557999999999987310 0112222222222221 22233
Q ss_pred CceeEEEEec-cCccCc
Q 019426 294 SALHITAFVA-CEHVSG 309 (341)
Q Consensus 294 ~~~~iilf~n-~d~~~~ 309 (341)
.|+++++| +|+...
T Consensus 115 --~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 115 --KPRIVVLNKIDLLDE 129 (170)
T ss_pred --cccEEEEEchhcCCc
Confidence 67888888 998743
No 159
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.10 E-value=0.0068 Score=52.64 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=40.8
Q ss_pred CccCcccceeccccccCeEEE--EeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 188 YVPTKDDVLYARVRTTGVVEI--QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 188 Y~Pt~~DIl~~r~~T~Gi~e~--~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
|+-.+.| ..+..|.|++-. .+.. .-..+.|.+||+||||..+-.-.-.-.+.-+|+|+.||+.
T Consensus 40 YV~~~~d--e~~~q~~GvN~mdkt~~i----~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~ 104 (205)
T KOG1673|consen 40 YVQNEYD--EEYTQTLGVNFMDKTVSI----RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR 104 (205)
T ss_pred hhcchhH--HHHHHHhCccceeeEEEe----cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc
Confidence 4444434 455678888753 2310 2234789999999998444433333567889999999996
No 160
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.07 E-value=0.0041 Score=53.22 Aligned_cols=32 Identities=41% Similarity=0.704 Sum_probs=26.3
Q ss_pred hcccceEEeccCCCcchhHHHHHH------hhhcCCCC
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK------LLFQTGFD 76 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~------~~~~~~~~ 76 (341)
++++|++++|-+.+|||||+||++ +...+||+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn 52 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN 52 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc
Confidence 467999999999999999999997 33355664
No 161
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.07 E-value=0.022 Score=50.34 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=51.2
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+..+.++|++|+....+........+|++|+|||..+- -...+.+.+..+... + .|
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~~----~-------~p 124 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILREL----G-------IP 124 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHHT----T--------S
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccc-----------ccccccccccccccc----c-------cc
Confidence 5678899999999987777777778899999999998862 233455555555332 2 67
Q ss_pred EEEEec-cCcc
Q 019426 298 ITAFVA-CEHV 307 (341)
Q Consensus 298 iilf~n-~d~~ 307 (341)
+++++| +|++
T Consensus 125 ~ivvlNK~D~~ 135 (188)
T PF00009_consen 125 IIVVLNKMDLI 135 (188)
T ss_dssp EEEEEETCTSS
T ss_pred eEEeeeeccch
Confidence 888888 9998
No 162
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.05 E-value=0.0061 Score=53.32 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=23.4
Q ss_pred HHHHHHhhcccceEEeccCCCcchhHHHHHH
Q 019426 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 38 ~~~~~~~~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++.+.+++ +++||+||..+|||||++|.+.
T Consensus 8 rk~k~ker-E~riLiLGLdNsGKTti~~kl~ 37 (185)
T KOG0073|consen 8 RKQKLKER-EVRILILGLDNSGKTTIVKKLL 37 (185)
T ss_pred HHHHhhhh-eeEEEEEecCCCCchhHHHHhc
Confidence 33343433 7899999999999999999764
No 163
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.98 E-value=0.016 Score=52.23 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=34.0
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+++.++.++|++|+....+.+...+..++++|+|+|.++
T Consensus 73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC
Confidence 5677889999999997655667778899999999999875
No 164
>PRK06217 hypothetical protein; Validated
Probab=95.97 E-value=0.0043 Score=54.88 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
+|+|.|.+||||||+.+++.-.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998744
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.92 E-value=0.011 Score=60.18 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.7
Q ss_pred ccCCceeEEEecCCccc--------cccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~--------eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+..+.+||+||+.. .+..|..++.++++||||+|.++
T Consensus 82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~ 129 (472)
T PRK03003 82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV 129 (472)
T ss_pred EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 45567899999999863 23446678899999999999986
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.92 E-value=0.019 Score=60.32 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=48.7
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|.++-. ..+++..+..... .+ .|+++
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-----------~~qt~~~~~~~~~----~~-------ipiIi 127 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-----------EAQTLANVYLALE----ND-------LEIIP 127 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-----------CHhHHHHHHHHHH----cC-------CCEEE
Confidence 68999999999988889999999999999999998621 1123333333332 12 57899
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
++| +|+.
T Consensus 128 ViNKiDl~ 135 (595)
T TIGR01393 128 VINKIDLP 135 (595)
T ss_pred EEECcCCC
Confidence 999 9986
No 167
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.91 E-value=0.015 Score=60.29 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=55.6
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.-|.......| .+++..+.+||++|+.........++..++++|+|+|.++-- -.....+|+.
T Consensus 64 giSi~~~~~~~------~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~~t~~l~~~ 126 (526)
T PRK00741 64 GISVTSSVMQF------PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-----------EPQTRKLMEV 126 (526)
T ss_pred CCceeeeeEEE------EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-----------CHHHHHHHHH
Confidence 33444444566 678899999999999776666666889999999999988621 1123344433
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccC
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
. . ..+ .|+++|+| +|+..
T Consensus 127 ~-~---~~~-------iPiiv~iNK~D~~~ 145 (526)
T PRK00741 127 C-R---LRD-------TPIFTFINKLDRDG 145 (526)
T ss_pred H-H---hcC-------CCEEEEEECCcccc
Confidence 2 1 123 78999999 99863
No 168
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.035 Score=47.91 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=59.1
Q ss_pred ccccccCeEE---EEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHH
Q 019426 198 ARVRTTGVVE---IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274 (341)
Q Consensus 198 ~r~~T~Gi~e---~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl 274 (341)
+...|.||.- +.|. ..+.+++++||..||...|..=--||.++.++|.+-|++. ++.-| |+
T Consensus 49 afvsTvGidFKvKTvyr-----~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN-------eeSf~----sv 112 (193)
T KOG0093|consen 49 AFVSTVGIDFKVKTVYR-----SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN-------EESFN----SV 112 (193)
T ss_pred ceeeeeeeeEEEeEeee-----cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC-------HHHHH----HH
Confidence 4467778752 2231 2345889999999998888777789999999999999885 11122 23
Q ss_pred HHHHHHhcCccccCccccCCceeEEEEec-cCccCc
Q 019426 275 ELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 275 ~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+-|-..+..-.-.+ .||||..| ||+-+.
T Consensus 113 qdw~tqIktysw~n-------aqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 113 QDWITQIKTYSWDN-------AQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHHheeeeccC-------ceEEEEecccCCccc
Confidence 33333333322223 78999998 999643
No 169
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.85 E-value=0.0053 Score=53.90 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=22.0
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++..||+++|..+|||||++++++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEEECCCccchHHHHHHhh
Confidence 567899999999999999999876
No 170
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.84 E-value=0.0069 Score=44.56 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.7
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
.+|.|++||||||++..+..+-
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998543
No 171
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.79 E-value=0.0053 Score=56.20 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.++|++||||||+++.+-.+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999998665
No 172
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=95.75 E-value=0.017 Score=60.64 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++.++.+||+.|+......|..++..++++++|||.++ .-+..+...|..+... + .
T Consensus 60 ~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~~----~-------i 117 (594)
T TIGR01394 60 RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALEL----G-------L 117 (594)
T ss_pred EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHHC----C-------C
Confidence 6778999999999998888888899999999999999875 1244555666665542 2 5
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 118 p~IVviNKiD~~ 129 (594)
T TIGR01394 118 KPIVVINKIDRP 129 (594)
T ss_pred CEEEEEECCCCC
Confidence 7788898 9986
No 173
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.73 E-value=0.0065 Score=50.77 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.8
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
|++.|++||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999986
No 174
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.71 E-value=0.029 Score=46.77 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=30.6
Q ss_pred cCCceeEEEecCCcccccc--------ccccccCCccEEEEEeeccC
Q 019426 218 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~--------kW~~~f~~v~~IIFvvslSd 256 (341)
..+..+.+||.+|....+. .|..++.++++++||+|..+
T Consensus 42 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~ 88 (157)
T cd01894 42 WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGRE 88 (157)
T ss_pred ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccc
Confidence 3456789999999977543 45567788999999999875
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.70 E-value=0.025 Score=50.05 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=26.7
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+..+.+||++|+....+.-......++++++|+|.++
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 36789999999985432222222346789999999886
No 176
>PRK13351 elongation factor G; Reviewed
Probab=95.68 E-value=0.019 Score=61.31 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=60.0
Q ss_pred ccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426 198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277 (341)
Q Consensus 198 ~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF 277 (341)
.|..|.+..-..+ .+.+..+.+||+.|+......|..++..++++|+|+|.++-.+ .....++
T Consensus 56 ~r~~ti~~~~~~~------~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-----------~~~~~~~ 118 (687)
T PRK13351 56 ERGITIESAATSC------DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-----------PQTETVW 118 (687)
T ss_pred hcCCCcccceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-----------HHHHHHH
Confidence 3455666555666 6778899999999998777889999999999999999886321 1233444
Q ss_pred HHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426 278 DWVLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 278 ~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+.+-.. + .|+++++| +|+..
T Consensus 119 ~~~~~~----~-------~p~iiviNK~D~~~ 139 (687)
T PRK13351 119 RQADRY----G-------IPRLIFINKMDRVG 139 (687)
T ss_pred HHHHhc----C-------CCEEEEEECCCCCC
Confidence 443221 2 68889998 99873
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.65 E-value=0.027 Score=60.88 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=51.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+......|...+..+|++|+|+|..+ ..+.++.+.+..+-. .+ .
T Consensus 333 ~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~~----~~-------v 390 (787)
T PRK05306 333 ETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAKA----AG-------V 390 (787)
T ss_pred EECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHHh----cC-------C
Confidence 4556789999999998888889888999999999999875 234444444433211 23 6
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 391 PiIVviNKiDl~ 402 (787)
T PRK05306 391 PIIVAINKIDKP 402 (787)
T ss_pred cEEEEEECcccc
Confidence 8999999 9986
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.63 E-value=0.019 Score=60.33 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=49.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||++|+...+..|..++..++++|+|+|.++-.+ .+++..+..... .+ .|++
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-----------~qt~~~~~~~~~----~~-------lpiI 130 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE----ND-------LEII 130 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CC-------CCEE
Confidence 4679999999999988899999999999999999986311 123333333322 12 5788
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+++| +|+.
T Consensus 131 vViNKiDl~ 139 (600)
T PRK05433 131 PVLNKIDLP 139 (600)
T ss_pred EEEECCCCC
Confidence 8898 9986
No 179
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.63 E-value=0.0073 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|..|||||||+.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLL 22 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 699999999999999988764
No 180
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.59 E-value=0.0081 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=20.8
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...+|++++|.+++|||||++++.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 355799999999999999999864
No 181
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.59 E-value=0.022 Score=53.46 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=55.3
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
.|.......+ .+++..+.+||++|+......|..++..++++|+|+|.++-.+ .....+|+.+
T Consensus 50 ~ti~~~~~~~------~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-----------~~~~~~~~~~ 112 (268)
T cd04170 50 MSISTSVAPL------EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-----------VGTEKLWEFA 112 (268)
T ss_pred ccccceeEEE------EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-----------HHHHHHHHHH
Confidence 3444444555 5677889999999987666778888999999999999986322 1233444433
Q ss_pred hcCccccCccccCCceeEEEEec-cCccC
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
.. .+ .|+++++| +|...
T Consensus 113 ~~----~~-------~p~iivvNK~D~~~ 130 (268)
T cd04170 113 DE----AG-------IPRIIFINKMDRER 130 (268)
T ss_pred HH----cC-------CCEEEEEECCccCC
Confidence 22 12 57888888 99874
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.58 E-value=0.043 Score=57.60 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=48.0
Q ss_pred eeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEE
Q 019426 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAF 301 (341)
Q Consensus 222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf 301 (341)
.+.+||++|+......|..++..+|++|+|+|..+- .+.++++.+...- ..+ .|++++
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-----------v~~qT~e~i~~~~----~~~-------vPiIVv 193 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-----------VMPQTIEAISHAK----AAN-------VPIIVA 193 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-----------CCHhHHHHHHHHH----HcC-------CCEEEE
Confidence 899999999988888888889999999999997751 2344444443221 123 689999
Q ss_pred ec-cCcc
Q 019426 302 VA-CEHV 307 (341)
Q Consensus 302 ~n-~d~~ 307 (341)
+| +|+.
T Consensus 194 iNKiDl~ 200 (587)
T TIGR00487 194 INKIDKP 200 (587)
T ss_pred EECcccc
Confidence 99 9986
No 183
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=95.57 E-value=0.025 Score=58.04 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=30.1
Q ss_pred ccCCceeEEEecCCccc-------cccccccccCCccEEEEEeeccCc
Q 019426 217 KKSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdy 257 (341)
.+.+..|.++|++|... ....+..+++.+++||||||+++.
T Consensus 202 ~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~ 249 (500)
T PRK12296 202 QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL 249 (500)
T ss_pred EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccc
Confidence 45567899999999631 123344557889999999999864
No 184
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.54 E-value=0.008 Score=50.53 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.2
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.|++++|.+++|||||++++.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998864
No 185
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.53 E-value=0.028 Score=51.70 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=48.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||..|+......-..++..++++|+|+|.++- -..+...++...... + .|++
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-----------~~~~t~~~l~~~~~~----~-------~p~i 129 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-----------VCVQTETVLRQALKE----R-------VKPV 129 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-----------CCHHHHHHHHHHHHc----C-------CCEE
Confidence 56789999999987666667778999999999998751 133344555544332 2 5788
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+++| +|++
T Consensus 130 lviNKiD~~ 138 (222)
T cd01885 130 LVINKIDRL 138 (222)
T ss_pred EEEECCCcc
Confidence 9998 9986
No 186
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.52 E-value=0.0081 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.4
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+..|++++|+++||||||++++.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999999864
No 187
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=95.52 E-value=0.03 Score=48.63 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCccCcccceeccccc-cCeEEEEeccCCCcccCCceeEEEecCCcccc-ccccccccCCccEEEEEeeccCcccccccC
Q 019426 187 NYVPTKDDVLYARVRT-TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE-RRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (341)
Q Consensus 187 ~Y~Pt~~DIl~~r~~T-~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~e-R~kW~~~f~~v~~IIFvvslSdydq~l~Ed 264 (341)
.|.||.+||..+-.-| .|.. -.++++|..|-+.. -..=.|||.-.|+.+.|-|..++-
T Consensus 39 e~~pTiEDiY~~svet~rgar--------------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e------ 98 (198)
T KOG3883|consen 39 ELHPTIEDIYVASVETDRGAR--------------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE------ 98 (198)
T ss_pred ccccchhhheeEeeecCCChh--------------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH------
Confidence 5889999997765543 2322 34789999886655 344478999999999998888751
Q ss_pred CCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCc
Q 019426 265 EQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEH 306 (341)
Q Consensus 265 ~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~ 306 (341)
.-+|++.-+...+. +..-+. +||++++| +|.
T Consensus 99 -Sf~rv~llKk~Idk---~KdKKE-------vpiVVLaN~rdr 130 (198)
T KOG3883|consen 99 -SFQRVELLKKEIDK---HKDKKE-------VPIVVLANKRDR 130 (198)
T ss_pred -HHHHHHHHHHHHhh---cccccc-------ccEEEEechhhc
Confidence 23554443333332 444444 89999999 887
No 188
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.47 E-value=0.025 Score=51.07 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=32.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..+.+||++|+......+..++..++++|+|+|.++
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC
Confidence 568999999998877788888999999999999886
No 189
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.019 Score=51.33 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=36.5
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.-..+++++||++||.+.|..-..||.++.+.|.|-|+..
T Consensus 51 d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~ 90 (216)
T KOG0098|consen 51 DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR 90 (216)
T ss_pred cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc
Confidence 5567899999999999999999999999999999999885
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.46 E-value=0.029 Score=60.24 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||++|+......|..++..++++|+|||.++- .+..+++.+..+.. .+ .|+
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k~----~~-------iPi 350 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQA----AN-------VPI 350 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHHh----cC-------ceE
Confidence 357899999999988888899999999999999998762 12333444433321 23 689
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++++| +|+..
T Consensus 351 IVViNKiDl~~ 361 (742)
T CHL00189 351 IVAINKIDKAN 361 (742)
T ss_pred EEEEECCCccc
Confidence 99999 99873
No 191
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.45 E-value=0.016 Score=53.45 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=27.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc-------------CCCCHHHHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ-------------TGFDEAELKSYIS 85 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~-------------~~~~~~e~~~~~~ 85 (341)
-+.|+|++||||||+++.+..+-. ...++.++..+|.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 589999999999999999875432 1245666766665
No 192
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.037 Score=47.77 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=56.2
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
-..+++.+||..||...|..=..||..++|+|.|-|+|. .+.-..|-|=+...++-.|++.++
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlreie~yan~kvlk---------- 115 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLREIEQYANNKVLK---------- 115 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHHHHHHHhhcceEE----------
Confidence 345789999999999999988999999999999999996 233456777777777777766432
Q ss_pred EEEEec-cCcc
Q 019426 298 ITAFVA-CEHV 307 (341)
Q Consensus 298 iilf~n-~d~~ 307 (341)
||..| +|+-
T Consensus 116 -ilvgnk~d~~ 125 (213)
T KOG0095|consen 116 -ILVGNKIDLA 125 (213)
T ss_pred -Eeeccccchh
Confidence 56667 7764
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=95.45 E-value=0.016 Score=58.17 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=36.9
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
|..+....| ..++..+.+||++|++...+.....+.+++++|+|+|.++
T Consensus 72 Tid~~~~~~------~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~ 120 (426)
T TIGR00483 72 TIDVAHWKF------ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGD 120 (426)
T ss_pred eEEEEEEEE------ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCC
Confidence 333444556 5677899999999987655555556678999999999986
No 194
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.43 E-value=0.0085 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.4
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++.+|++++|.+++|||||++++.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~ 25 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFL 25 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHh
Confidence 567899999999999999999763
No 195
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.40 E-value=0.0097 Score=48.16 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=17.5
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
||+++|..++|||||++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l 19 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINAL 19 (116)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 6899999999999999875
No 196
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.31 E-value=0.01 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.++|+|++||||||+++.+.-.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998544
No 197
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=95.31 E-value=0.037 Score=58.04 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=35.2
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..++..+.+||+.|+....+.+...+.+++++|+|+|.++
T Consensus 46 ~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 46 PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred EeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence 3445789999999998888889999999999999999986
No 198
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.30 E-value=0.031 Score=59.67 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=51.6
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||.+|+......|...+..++++|||+|.++-. ..+...++..+-.. + .
T Consensus 71 ~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~~----~-------~ 128 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-----------QPQSETVWRQANRY----E-------V 128 (689)
T ss_pred EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-----------ChhHHHHHHHHHHc----C-------C
Confidence 677889999999999877777888999999999999987621 12233444433221 2 6
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 129 p~ivviNK~D~~~ 141 (689)
T TIGR00484 129 PRIAFVNKMDKTG 141 (689)
T ss_pred CEEEEEECCCCCC
Confidence 7888999 99873
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.22 E-value=0.045 Score=54.88 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.7
Q ss_pred ccCCceeEEEecCCccc--------cccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~--------eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+..+.+||++|+.. .+..+..++.+++++|||+|.++
T Consensus 45 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~ 92 (435)
T PRK00093 45 EWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA 92 (435)
T ss_pred EECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 34567899999999975 23445667889999999999875
No 200
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=95.20 E-value=0.047 Score=55.02 Aligned_cols=74 Identities=8% Similarity=0.145 Sum_probs=44.9
Q ss_pred CceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc-CccccCccc
Q 019426 220 GEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEVFFC 291 (341)
Q Consensus 220 ~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n-~~~f~~~~~ 291 (341)
+.+|.++|++|... ....|....+.++++|||+|+++.+. .+-+++-..+.+.+-. ++.+.+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~-------~dp~e~~~~i~~EL~~y~~~L~~--- 274 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG-------RDPIEDYEKINKELKLYNPRLLE--- 274 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc-------CChHHHHHHHHHHHhhhchhccC---
Confidence 56899999999732 23455666778999999999987421 1111111122222222 233334
Q ss_pred cCCceeEEEEec-cCcc
Q 019426 292 ATSALHITAFVA-CEHV 307 (341)
Q Consensus 292 ~~~~~~iilf~n-~d~~ 307 (341)
+|++|.+| +|+.
T Consensus 275 ----kP~IVV~NK~DL~ 287 (424)
T PRK12297 275 ----RPQIVVANKMDLP 287 (424)
T ss_pred ----CcEEEEEeCCCCc
Confidence 78888888 9974
No 201
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.20 E-value=0.012 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++||||||+++++.-.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999876543
No 202
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=95.19 E-value=0.04 Score=57.06 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=47.6
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.++|++|+......-..++..++++|+|+|.++-- ......+++ ++.. .+ .
T Consensus 76 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~~t~~l~~-~~~~---~~-------~ 133 (527)
T TIGR00503 76 PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-----------ETRTRKLME-VTRL---RD-------T 133 (527)
T ss_pred eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-----------CHHHHHHHH-HHHh---cC-------C
Confidence 678899999999999655544444678999999999988621 111233333 2221 23 6
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++|+| +|+.
T Consensus 134 PiivviNKiD~~ 145 (527)
T TIGR00503 134 PIFTFMNKLDRD 145 (527)
T ss_pred CEEEEEECcccc
Confidence 8999999 9975
No 203
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.19 E-value=0.012 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999876443
No 204
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.18 E-value=0.013 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.1
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
|+|-|+.||||||+++.+.-.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987643
No 205
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.18 E-value=0.012 Score=49.77 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|++++|||||++++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999998753
No 206
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.17 E-value=0.012 Score=49.83 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=17.7
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
||+++|++++|||||++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~ 19 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRL 19 (162)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 7999999999999999874
No 207
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.012 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
=+.|+|++||||||+++-+.-+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988744
No 208
>PRK12740 elongation factor G; Reviewed
Probab=95.09 E-value=0.036 Score=58.97 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=59.0
Q ss_pred cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (341)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~ 278 (341)
|..|.+.....| .+++..+.++|+.|+......|..++..+|++|+|+|.++-. ......++.
T Consensus 44 rgiTi~~~~~~~------~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-----------~~~~~~~~~ 106 (668)
T PRK12740 44 RGISITSAATTC------EWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-----------EPQTETVWR 106 (668)
T ss_pred cCCCeeeceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-----------CHHHHHHHH
Confidence 455666666677 678899999999999776677888899999999999988632 123344444
Q ss_pred HHhcCccccCccccCCceeEEEEec-cCcc
Q 019426 279 WVLKQPCFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
.+... + .|+++++| +|..
T Consensus 107 ~~~~~----~-------~p~iiv~NK~D~~ 125 (668)
T PRK12740 107 QAEKY----G-------VPRIIFVNKMDRA 125 (668)
T ss_pred HHHHc----C-------CCEEEEEECCCCC
Confidence 43321 2 57788888 9986
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=95.04 E-value=0.063 Score=53.89 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=37.5
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
--|..+....| ..++..+.+||++|++...+.-.....+++++|+|+|.++
T Consensus 69 G~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 69 GVTIDLAHKKF------ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred CccceeeeEEE------ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 44555666677 6778899999999985443333344568999999999885
No 210
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=95.03 E-value=0.033 Score=50.00 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=32.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..+.+||+.|+....+.|.....+++++++|+|.++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence 578999999998888888888889999999999885
No 211
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.03 E-value=0.015 Score=47.58 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=17.5
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
.++|+|++||||||+++.+
T Consensus 17 ~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 17 GVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEcCCCCCHHHHHHHh
Confidence 5899999999999999985
No 212
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.02 E-value=0.014 Score=49.72 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.3
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+||+++|.++||||||++.+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l 20 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQY 20 (172)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999875
No 213
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.01 E-value=0.068 Score=53.40 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=46.6
Q ss_pred ccCCceeEEEecCCcccccccc-----------ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 217 KKSGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW-----------~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
..++..+.+||.+|++..++.+ ..++..++++|+|+|.++- -......++..+...
T Consensus 216 ~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-----------~~~~~~~~~~~~~~~-- 282 (429)
T TIGR03594 216 ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-----------ITEQDLRIAGLILEA-- 282 (429)
T ss_pred EECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHHHHc--
Confidence 4566789999999987655443 2357789999999998851 011223344443331
Q ss_pred ccCccccCCceeEEEEec-cCcc
Q 019426 286 FEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
+ .|+++++| +|++
T Consensus 283 --~-------~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 283 --G-------KALVIVVNKWDLV 296 (429)
T ss_pred --C-------CcEEEEEECcccC
Confidence 2 68899998 9998
No 214
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=94.98 E-value=0.015 Score=49.82 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=18.5
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+|++++|.+++|||||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l 20 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKL 20 (159)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999986
No 215
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.96 E-value=0.015 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.1
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+..+|++++|.+++|||||++++.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~ 38 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK 38 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Confidence 345899999999999999999874
No 216
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.96 E-value=0.016 Score=49.66 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.8
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFL 21 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998753
No 217
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.94 E-value=0.014 Score=50.18 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.3
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
|+|.|++||||||+++.+.-.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998743
No 218
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.92 E-value=0.015 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.2
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
+.|||++||||||+++.+.-+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999987544
No 219
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.92 E-value=0.019 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.5
Q ss_pred eEEeccCCCcchhHHHHHHhhhc
Q 019426 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~~ 72 (341)
++|+|++||||||+++++.-.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 57999999999999999875543
No 220
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.91 E-value=0.016 Score=49.39 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
+|+++|..++|||||++++.-.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999997543
No 221
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.91 E-value=0.016 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=19.2
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
..|++++|.+|+|||||+.++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l 23 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRF 23 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999985
No 222
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.015 Score=56.79 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
=+.|||++||||||+++.+.-+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998555
No 223
>PRK08233 hypothetical protein; Provisional
Probab=94.90 E-value=0.016 Score=50.43 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=18.6
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
.-|.+.|++||||||+++++.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4577889999999999998864
No 224
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.89 E-value=0.02 Score=42.61 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.7
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
+.+.|+.||||||+.+++.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998765
No 225
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.88 E-value=0.016 Score=54.61 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
=+.|+|++||||||++|.+--+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 36899999999999999987544
No 226
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=94.84 E-value=0.017 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.6
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|.+++|||||++++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~ 21 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999997753
No 227
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.83 E-value=0.017 Score=51.23 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.1
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
-.+.|+|++||||||++|.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999976
No 228
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.83 E-value=0.017 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.3
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...|++++|.+++|||||++.+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999863
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.82 E-value=0.02 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-|-|+|++|||||||++.+..+.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE 56 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLE 56 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhc
Confidence 47899999999999999998776
No 230
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.79 E-value=0.018 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.++|+|++||||||+++.+.-.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5799999999999999988653
No 231
>PRK03839 putative kinase; Provisional
Probab=94.78 E-value=0.018 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+|+|..||||||+.+++.-.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999986544
No 232
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.76 E-value=0.019 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.3
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
+++.|.+||||||+++++.-.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999987643
No 233
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.75 E-value=0.018 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.9
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||++|++..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 568999999999999999973
No 234
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.73 E-value=0.019 Score=48.46 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|..++|||||++++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999988754
No 235
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.72 E-value=0.02 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=18.8
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+++|||||++++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~ 21 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFV 21 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999999754
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.68 E-value=0.02 Score=49.24 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=18.5
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
|++|+|+.|||||||+..+.
T Consensus 3 rimliG~~g~GKTTL~q~L~ 22 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALN 22 (143)
T ss_pred eEEEECCCCCCHHHHHHHHc
Confidence 89999999999999998765
No 237
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.68 E-value=0.02 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.8
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++++|.+++|||||++++.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3699999999999999999873
No 238
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.02 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.-++|+|++||||||+++++.-.+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999986554
No 239
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=94.65 E-value=0.085 Score=53.48 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred ccCCceeEEEecCCcccccccc--------ccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW--------~~~f~~v~~IIFvvslSd 256 (341)
.+++..+.+||+.|++.....| ..++.+++++|||+|.++
T Consensus 247 ~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~ 294 (442)
T TIGR00450 247 ELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ 294 (442)
T ss_pred EECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 5677889999999997543322 356789999999999986
No 240
>PLN00223 ADP-ribosylation factor; Provisional
Probab=94.65 E-value=0.02 Score=50.40 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=20.9
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++.+||+++|.++||||||++++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~ 38 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLK 38 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHc
Confidence 445899999999999999999764
No 241
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.65 E-value=0.02 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..++++|++||||||+++.+.--
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999987643
No 242
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=94.65 E-value=0.021 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+|+|||||++++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 489999999999999998753
No 243
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.62 E-value=0.02 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-+.|.|++||||||+++.+.-+
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988644
No 244
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.62 E-value=0.022 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.2
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..++|.|+.|+||||+++.+-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 368999999999999999876443
No 245
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.61 E-value=0.022 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.1
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
|.|.|++||||||+++.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999986554
No 246
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=94.61 E-value=0.021 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
..+|++++|.+++|||||++++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~ 24 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQY 24 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999875
No 247
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.60 E-value=0.022 Score=53.55 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.4
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
++++|++||||||++|.+-.+.
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999997554
No 248
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.60 E-value=0.021 Score=51.59 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
||+|+|++||||||+.+++.--|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999986443
No 249
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.59 E-value=0.022 Score=49.84 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.0
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
|+++|++||||||+.+++.--+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999886544
No 250
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.59 E-value=0.021 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+++|||||++++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~ 21 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYV 21 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999854
No 251
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=94.59 E-value=0.022 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.5
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|.+++|||||+.++.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~ 21 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFT 21 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 489999999999999997753
No 252
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.57 E-value=0.023 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.2
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++..|++++|.+++||||+++++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK 38 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999999864
No 253
>PRK13949 shikimate kinase; Provisional
Probab=94.57 E-value=0.022 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+|+|+.||||||+.+.+.-..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999886443
No 254
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=94.55 E-value=0.08 Score=52.04 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.5
Q ss_pred CCceeEEEecCCc-cc--------cccccccccCCccEEEEEeeccCc
Q 019426 219 SGEVYRLFDVGGQ-RN--------ERRKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 219 ~~~~~~l~DvgGq-r~--------eR~kW~~~f~~v~~IIFvvslSdy 257 (341)
++..+.+||..|. +. .++.| ..+.+++.||+|+|.++-
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~ 281 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDP 281 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCC
Confidence 4678999999998 32 11222 236689999999999973
No 255
>PRK14530 adenylate kinase; Provisional
Probab=94.53 E-value=0.025 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.0
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+|+|+|+.||||||+.+.+.-.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999986555
No 256
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.50 E-value=0.024 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+|+|+.||||||+.+++.--+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999986544
No 257
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.50 E-value=0.024 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..|++++|.+++|||||++++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~ 36 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFL 36 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHc
Confidence 5799999999999999998874
No 258
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.49 E-value=0.023 Score=48.72 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+||+++|++++|||||+.++.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~ 24 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFS 24 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999864
No 259
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.48 E-value=0.024 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+++|||||++++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~ 22 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFV 22 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999753
No 260
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.48 E-value=0.021 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=17.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
||+|.|+.++||||+++.+.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998755
No 261
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=94.48 E-value=0.023 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.1
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
..+|++++|.+|||||||++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~ 29 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRH 29 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999653
No 262
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.47 E-value=0.024 Score=47.55 Aligned_cols=20 Identities=20% Similarity=0.513 Sum_probs=17.7
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
+|+|+|.+|+|||||++.+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALT 20 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 47999999999999999753
No 263
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=94.46 E-value=0.024 Score=48.07 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.0
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+|++++|.++||||||++.+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l 20 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMF 20 (164)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999764
No 264
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=94.46 E-value=0.024 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.4
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+++|.+++|||||++++.
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHh
Confidence 45899999999999999998863
No 265
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.45 E-value=0.03 Score=57.05 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH----hhcccceEEeccCCCcchhHHH
Q 019426 31 AEIERRIEQETKA----EKHIQKLLLLGAGESGKSTIFK 65 (341)
Q Consensus 31 ~~Id~~L~~~~~~----~~~~~kiLllG~~eSGKST~~k 65 (341)
++||+.++.--+. ...---+.|+|++||||||+++
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4556555443322 1222368999999999999999
No 266
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.44 E-value=0.025 Score=49.28 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.6
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++++|.+++|||||++++.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~ 23 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFI 23 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999998764
No 267
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.42 E-value=0.024 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987554
No 268
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.42 E-value=0.024 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999886544
No 269
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=94.42 E-value=0.025 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=18.6
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.|++++|.+++|||||++++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~ 22 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFS 22 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999998654
No 270
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.41 E-value=0.025 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
-+++|.|++||||||++|++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 379999999999999999998
No 271
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=94.41 E-value=0.026 Score=47.77 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.9
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
.+|++++|.+++||||+++.+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~ 22 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQF 22 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 479999999999999998875
No 272
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.40 E-value=0.024 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999886443
No 273
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=94.40 E-value=0.025 Score=48.78 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|+.++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999998753
No 274
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.38 E-value=0.025 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887554
No 275
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.38 E-value=0.024 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+.-+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999887543
No 276
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.37 E-value=0.026 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.1
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+|++++|.+++|||||++++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~ 26 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYV 26 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHH
Confidence 34799999999999999999763
No 277
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.37 E-value=0.066 Score=56.21 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=32.2
Q ss_pred eeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+||++|+...+..|..++..++++|+|+|.++
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINE 104 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc
Confidence 48899999998888889999999999999999885
No 278
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.37 E-value=0.027 Score=47.01 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred CceeEEEecCCcccccc--------ccccccCCccEEEEEeeccCc
Q 019426 220 GEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~--------kW~~~f~~v~~IIFvvslSdy 257 (341)
+..+.+||.+|...... .+.+.+.++++++||+|.++.
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP 95 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence 35688999999753322 234557889999999999974
No 279
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.36 E-value=0.025 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|-|--+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886554
No 280
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.36 E-value=0.025 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.5
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
+.|.|++||||||+++.+.-+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 5688999999999999887544
No 281
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.026 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987554
No 282
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.027 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.9
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
..++|++|||||||+|.+-.+.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 5789999999999999887554
No 283
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.35 E-value=0.025 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999886554
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.34 E-value=0.028 Score=45.76 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.4
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
|||.|+.|+||||+++.+--.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 699999999999999987643
No 285
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.34 E-value=0.027 Score=46.73 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.8
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
.|+++|++++|||||++++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~ 20 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIA 20 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHc
Confidence 37899999999999999874
No 286
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.34 E-value=0.027 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-|+|.|++||||||+.|.+.-..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999887443
No 287
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.33 E-value=0.027 Score=47.54 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.9
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
.++++++|..++||||+++++
T Consensus 2 ~~~i~i~G~~~~GKstli~~l 22 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNAL 22 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999875
No 288
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.33 E-value=0.026 Score=50.77 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.4
Q ss_pred cccceEEeccCCCcchhHHHHHHhhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+...|.|.|++|||||||++.+.-..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999876443
No 289
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.33 E-value=0.027 Score=48.88 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.3
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+.+|++++|.+++|||||++++.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHc
Confidence 45799999999999999999764
No 290
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.32 E-value=0.027 Score=47.77 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=18.5
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
|++++|.+++|||||++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~ 20 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQ 20 (158)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 78999999999999999974
No 291
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.31 E-value=0.027 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=18.9
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|.+++|||||++++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~ 21 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLV 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
No 292
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=94.31 E-value=0.09 Score=52.47 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=46.4
Q ss_pred ceeEEEecCCcccc-------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcccc
Q 019426 221 EVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCA 292 (341)
Q Consensus 221 ~~~~l~DvgGqr~e-------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~ 292 (341)
..+.++|+.|...- ..+.....+.+++++||+|++.+|. .+.+++-..+.+.+... +.+.+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L~~---- 275 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKLAE---- 275 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhhcC----
Confidence 46999999997421 1233445789999999999986531 12233333344444432 33333
Q ss_pred CCceeEEEEec-cCccCc
Q 019426 293 TSALHITAFVA-CEHVSG 309 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~~ 309 (341)
.|++|.+| +|++..
T Consensus 276 ---kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 276 ---KPRWLVFNKIDLLDE 290 (390)
T ss_pred ---CCEEEEEeCCccCCh
Confidence 67787788 998743
No 293
>PRK14532 adenylate kinase; Provisional
Probab=94.31 E-value=0.027 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+++|+.||||||+.+.+.--+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999886444
No 294
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.28 E-value=0.027 Score=49.85 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887554
No 295
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.028 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886443
No 296
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.23 E-value=0.026 Score=60.39 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.9
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
-++.|+|.+||||||++|.|.-+|.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998884
No 297
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.23 E-value=0.03 Score=46.67 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=27.4
Q ss_pred cCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccC
Q 019426 218 KSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSd 256 (341)
..+..+.+||++|..... +.| .++..++++++|+|.++
T Consensus 46 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~~ 92 (157)
T cd04164 46 IGGIPVRLIDTAGIRETEDEIEKIGIERAR-EAIEEADLVLFVIDASR 92 (157)
T ss_pred eCCEEEEEEECCCcCCCcchHHHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 345578999999974321 122 35678999999999996
No 298
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.21 E-value=0.028 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 299
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.029 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987554
No 300
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.028 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887543
No 301
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.19 E-value=0.03 Score=47.29 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=18.1
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
||+++|.+++||||+++++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~ 20 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLK 20 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999864
No 302
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.19 E-value=0.03 Score=46.52 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=17.7
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
||+++|.+++|||||++++
T Consensus 2 kv~liG~~~vGKSsL~~~l 20 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQAL 20 (142)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999875
No 303
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.19 E-value=0.029 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|--+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999886543
No 304
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.19 E-value=0.028 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--++
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887554
No 305
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.029 Score=51.43 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 306
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.18 E-value=0.029 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|-+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 307
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=94.17 E-value=0.057 Score=50.53 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHhhcccceEEeccCCCcchhHHHHHH
Q 019426 42 KAEKHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 42 ~~~~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+......+|+|+|.+|+||||+++.+-
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHh
Confidence 445667899999999999999998753
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.16 E-value=0.029 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999987543
No 309
>PLN03108 Rab family protein; Provisional
Probab=94.16 E-value=0.03 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++|+|+.++|||||++++.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~ 27 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFT 27 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999864
No 310
>PRK11058 GTPase HflX; Provisional
Probab=94.15 E-value=0.13 Score=52.02 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=41.7
Q ss_pred eeEEEecCCcccc--------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426 222 VYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT 293 (341)
Q Consensus 222 ~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~ 293 (341)
.+.+||..|.-.. -+.+...+.+++++|+|+|.|+- ...+.+..+..++..-.-.+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~-----------~~~e~l~~v~~iL~el~~~~----- 309 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADV-----------RVQENIEAVNTVLEEIDAHE----- 309 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCc-----------cHHHHHHHHHHHHHHhccCC-----
Confidence 7899999998322 12234446789999999999862 12233333333322110112
Q ss_pred CceeEEEEec-cCccC
Q 019426 294 SALHITAFVA-CEHVS 308 (341)
Q Consensus 294 ~~~~iilf~n-~d~~~ 308 (341)
.|+++..| +|+..
T Consensus 310 --~pvIiV~NKiDL~~ 323 (426)
T PRK11058 310 --IPTLLVMNKIDMLD 323 (426)
T ss_pred --CCEEEEEEcccCCC
Confidence 67888888 99973
No 311
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.14 E-value=0.03 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999986544
No 312
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.029 Score=52.59 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-+.|+|++||||||++|-+--
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998763
No 313
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.14 E-value=0.03 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887554
No 314
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.14 E-value=0.031 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.9
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|..++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~ 21 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYS 21 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999763
No 315
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.13 E-value=0.031 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..|++++|.+++|||||++++.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~ 25 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFT 25 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999863
No 316
>COG4639 Predicted kinase [General function prediction only]
Probab=94.13 E-value=0.029 Score=48.86 Aligned_cols=18 Identities=50% Similarity=0.597 Sum_probs=16.5
Q ss_pred ceEEeccCCCcchhHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQ 66 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq 66 (341)
=++|.|+++|||||++|+
T Consensus 4 LvvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 4 LVVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEEecCCCCchhHHHHH
Confidence 378999999999999998
No 317
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.12 E-value=0.03 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+.-+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886443
No 318
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.12 E-value=0.11 Score=51.81 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=30.6
Q ss_pred ccCCceeEEEecCCcc--------ccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr--------~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+..+.+||.||.. ..+..+..++.++++|+||+|..+
T Consensus 43 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~ 90 (429)
T TIGR03594 43 EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE 90 (429)
T ss_pred EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 4566789999999963 233445667889999999999875
No 319
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.12 E-value=0.03 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987554
No 320
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.11 E-value=0.031 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||+++|.+++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~ 21 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV 21 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999863
No 321
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.03 Score=52.04 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=20.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++|+|++||||||+++.+--+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcC
Confidence 78999999999999999998555
No 322
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.09 E-value=0.032 Score=48.14 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.1
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
|++++|.+++|||||++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~ 20 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLK 20 (169)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999764
No 323
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.031 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999886543
No 324
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.06 E-value=0.033 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.2
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
.+..+++++|.+++|||||++++
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l 38 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINAL 38 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 45679999999999999999864
No 325
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.05 E-value=0.031 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999886554
No 326
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.05 E-value=0.032 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.|--++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999887554
No 327
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.04 E-value=0.038 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.5
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+|+|+|++||||||+.+++.-.|
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999986544
No 328
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.04 E-value=0.032 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++|||||||+|.+--+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998754
No 329
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.032 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987554
No 330
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.03 E-value=0.032 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987543
No 331
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.032 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|--++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987554
No 332
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.02 E-value=0.039 Score=53.67 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhhcCCC
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQTGF 75 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~~~~ 75 (341)
.+++|+|++|+||||+++.+...+...+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4899999999999999999998876554
No 333
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.02 E-value=0.047 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.7
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
+.++|++||||||+++.+..++
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998665
No 334
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.033 Score=48.91 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999886443
No 335
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.02 E-value=0.033 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|-+--++
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987554
No 336
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.02 E-value=0.033 Score=48.99 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.++|+|++||||||+++.+--+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999987554
No 337
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.00 E-value=0.072 Score=43.21 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.4
Q ss_pred ccceEEeccCCCcchhHHHHHHhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..-+++.|+.|+||||+++.+.-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999988644
No 338
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.98 E-value=0.076 Score=48.68 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHh
Q 019426 33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 33 Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
+-+.|+.-.+...+..-+.|.|++|||||||++.+.-
T Consensus 19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3334444333334556788999999999999997763
No 339
>PRK06547 hypothetical protein; Provisional
Probab=93.97 E-value=0.054 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.1
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+...|++.|++||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 455678888999999999998874
No 340
>PRK02496 adk adenylate kinase; Provisional
Probab=93.96 E-value=0.041 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+++++|++||||||+++.+.-.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999986544
No 341
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.033 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987543
No 342
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.96 E-value=0.034 Score=50.48 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++-+--++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999887554
No 343
>PRK14531 adenylate kinase; Provisional
Probab=93.94 E-value=0.042 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+++|+.||||||+.+.+.--+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999886544
No 344
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.92 E-value=0.035 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|.-++
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999987544
No 345
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.036 Score=48.46 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886554
No 346
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.036 Score=49.37 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.1
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
.+.|+|++||||||++|-+--
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998874
No 347
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.90 E-value=0.036 Score=48.63 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999987554
No 348
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.89 E-value=0.037 Score=48.04 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999886543
No 349
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.89 E-value=0.035 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+|+|++||||||+++.+..+.
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999987554
No 350
>PRK15494 era GTPase Era; Provisional
Probab=93.87 E-value=0.15 Score=49.77 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.1
Q ss_pred cCCceeEEEecCCcccc---------ccccccccCCccEEEEEeeccC
Q 019426 218 KSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~e---------R~kW~~~f~~v~~IIFvvslSd 256 (341)
.++..+.+||++|+... |..|. ++.+++++|||+|.++
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~-~l~~aDvil~VvD~~~ 143 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWS-SLHSADLVLLIIDSLK 143 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHH-HhhhCCEEEEEEECCC
Confidence 44567899999998421 12232 4789999999999764
No 351
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=93.86 E-value=0.038 Score=48.28 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|.+++|||||++++.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~ 22 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYT 22 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999998764
No 352
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=93.85 E-value=0.18 Score=44.83 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=50.5
Q ss_pred ccCCceeEEEecCCcccc-----------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 217 KKSGEVYRLFDVGGQRNE-----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~e-----------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
.+.+..+.++|..|-... .+.+..+..++++||||+++..+ +..-.+.++.+..++....
T Consensus 45 ~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~ 115 (196)
T cd01852 45 VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV 115 (196)
T ss_pred EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh
Confidence 456778999999985321 11123345789999999998764 2334556777777776443
Q ss_pred ccCccccCCceeEEEEeccCccCc
Q 019426 286 FEVFFCATSALHITAFVACEHVSG 309 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n~d~~~~ 309 (341)
+. ..|++|+++|.+..
T Consensus 116 ~~--------~~ivv~T~~d~l~~ 131 (196)
T cd01852 116 LD--------HTIVLFTRGDDLEG 131 (196)
T ss_pred Hh--------cEEEEEECccccCC
Confidence 33 35788888998843
No 353
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.85 E-value=0.036 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 58999999999999999987544
No 354
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.036 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998744
No 355
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.84 E-value=0.037 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++||||||+++.+--++
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999886554
No 356
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.84 E-value=0.16 Score=45.64 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=30.5
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..++..+.++|+.|....-+--......++++++|||.++
T Consensus 61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~ 100 (195)
T cd01884 61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD 100 (195)
T ss_pred cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence 5667789999999986544444445668999999999875
No 357
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.036 Score=50.91 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|-+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 358
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.82 E-value=0.039 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.7
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
|.|-|++|||||||++++.-..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999887544
No 359
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.82 E-value=0.037 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|-+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999987554
No 360
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.82 E-value=0.037 Score=56.94 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.3
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
-++.|+|++||||||++|.+--+|.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999887764
No 361
>PRK06762 hypothetical protein; Provisional
Probab=93.82 E-value=0.04 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+++.|.+||||||+++++.-.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999987554
No 362
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.81 E-value=0.037 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++||||||++|.+--++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987554
No 363
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.81 E-value=0.037 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.+--++
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999987654
No 364
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.81 E-value=0.037 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|--++
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987654
No 365
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.81 E-value=0.039 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887543
No 366
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.81 E-value=0.037 Score=50.62 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987554
No 367
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.038 Score=50.32 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999987443
No 368
>PTZ00369 Ras-like protein; Provisional
Probab=93.79 E-value=0.04 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.4
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++++|.+++|||||++.+.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~ 26 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFI 26 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999988643
No 369
>PRK12739 elongation factor G; Reviewed
Probab=93.78 E-value=0.099 Score=55.95 Aligned_cols=81 Identities=9% Similarity=-0.012 Sum_probs=57.8
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.-|.-.....| .+++..+.++|+.|+......|......+|++|+|||.++= -......++..
T Consensus 58 giti~~~~~~~------~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-----------~~~qt~~i~~~ 120 (691)
T PRK12739 58 GITITSAATTC------FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-----------VEPQSETVWRQ 120 (691)
T ss_pred CCCccceeEEE------EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHHHH
Confidence 33444445556 67888999999999977777788889999999999997751 12233455555
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccC
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+... + .|+++++| +|++.
T Consensus 121 ~~~~----~-------~p~iv~iNK~D~~~ 139 (691)
T PRK12739 121 ADKY----G-------VPRIVFVNKMDRIG 139 (691)
T ss_pred HHHc----C-------CCEEEEEECCCCCC
Confidence 4332 2 67889998 99873
No 370
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.038 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++.+--++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999987554
No 371
>PF05729 NACHT: NACHT domain
Probab=93.78 E-value=0.041 Score=46.52 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.9
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
++|.|.+|+||||+++.+-
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6899999999999998654
No 372
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.038 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999987654
No 373
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.77 E-value=0.039 Score=49.46 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.8
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
.++|.|++||||||++|++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999987
No 374
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.77 E-value=0.039 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999886554
No 375
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.76 E-value=0.039 Score=48.62 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 376
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.76 E-value=0.04 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.4
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
.+||+++|.++||||||++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~ 23 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRL 23 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 379999999999999999986
No 377
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.71 E-value=0.042 Score=46.37 Aligned_cols=20 Identities=40% Similarity=0.788 Sum_probs=18.2
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
|++++|..++||||+++++-
T Consensus 1 ki~iiG~~~~GKssli~~~~ 20 (158)
T cd00878 1 RILILGLDGAGKTTILYKLK 20 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 78999999999999999764
No 378
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.69 E-value=0.041 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999987443
No 379
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.69 E-value=0.04 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999886543
No 380
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.04 Score=50.73 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987554
No 381
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.04 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887543
No 382
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.68 E-value=0.048 Score=49.41 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+++|+.||||||+.+.+.-.|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999886444
No 383
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.66 E-value=0.042 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887554
No 384
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.042 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++||||||++|.+--++
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999887554
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.64 E-value=0.085 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHHhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-.+++.|+.||||||+++.+--+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999976533
No 386
>PRK10908 cell division protein FtsE; Provisional
Probab=93.64 E-value=0.042 Score=49.87 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.+--++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999987554
No 387
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=93.64 E-value=0.044 Score=47.32 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=18.0
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
+|+++|.+++|||||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~ 20 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQ 20 (167)
T ss_pred CEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999764
No 388
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.63 E-value=0.041 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999887543
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.62 E-value=0.044 Score=46.62 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++|||||||++-+--++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999886554
No 390
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.62 E-value=0.043 Score=49.42 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887554
No 391
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.61 E-value=0.053 Score=53.92 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=30.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc----------CCCCHHHHHHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ----------TGFDEAELKSYISVI 87 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~----------~~~~~~e~~~~~~~I 87 (341)
=+.|+|.+||||||+++.+--+|. ...+++.++.||..+
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 478999999999999999887773 235566777777653
No 392
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.61 E-value=0.043 Score=48.48 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.0
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++++|++||||||+++.+.-+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999987643
No 393
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.61 E-value=0.042 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886443
No 394
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=93.61 E-value=0.043 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=18.9
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+|++++|.+++|||||++++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~ 21 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFA 21 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 489999999999999999763
No 395
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=93.61 E-value=0.044 Score=46.72 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=17.2
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
|++++|.+++|||||+..+
T Consensus 1 ki~vvG~~~~GKtsli~~~ 19 (165)
T cd04146 1 KIAVLGASGVGKSALVVRF 19 (165)
T ss_pred CEEEECCCCCcHHHHHHHH
Confidence 6899999999999998664
No 396
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.042 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|||++||||||+++-|.-+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCc
Confidence 5789999999999999998744
No 397
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.042 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.+--++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999887554
No 398
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.59 E-value=0.042 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887543
No 399
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.59 E-value=0.042 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+.-+.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999986543
No 400
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=93.59 E-value=0.15 Score=51.69 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=48.8
Q ss_pred cCeEEEEeccCCCcccCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCcccccccCCCccchHHH
Q 019426 203 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET 273 (341)
Q Consensus 203 ~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eS 273 (341)
..+.+..+ .+++..+.+||+.|++... +.| .++.+++++|||+|.++... .+.
T Consensus 251 ~d~~~~~i------~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~-~~~~~aD~il~VvD~s~~~s-----------~~~ 312 (449)
T PRK05291 251 RDVIEEHI------NLDGIPLRLIDTAGIRETDDEVEKIGIERSR-EAIEEADLVLLVLDASEPLT-----------EED 312 (449)
T ss_pred cccEEEEE------EECCeEEEEEeCCCCCCCccHHHHHHHHHHH-HHHHhCCEEEEEecCCCCCC-----------hhH
Confidence 34455556 5677889999999986421 122 36788999999999986321 112
Q ss_pred HHHHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426 274 KELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 274 l~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
..++.. ..+ .|+++.+| +|+..
T Consensus 313 ~~~l~~------~~~-------~piiiV~NK~DL~~ 335 (449)
T PRK05291 313 DEILEE------LKD-------KPVIVVLNKADLTG 335 (449)
T ss_pred HHHHHh------cCC-------CCcEEEEEhhhccc
Confidence 233332 223 68888888 99974
No 401
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.043 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+.-+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987554
No 402
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=93.58 E-value=0.046 Score=46.11 Aligned_cols=20 Identities=45% Similarity=0.802 Sum_probs=17.8
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
+|+++|.+++|||||++++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHc
Confidence 58999999999999998864
No 403
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.042 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|--++
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987554
No 404
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.043 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+.-+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999987554
No 405
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.56 E-value=0.044 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++-+--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999987554
No 406
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.56 E-value=0.045 Score=47.82 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--++
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999887554
No 407
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.56 E-value=0.044 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|-+--+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999887554
No 408
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.56 E-value=0.049 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
|+|+|.+||||||+.+.+.-.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987443
No 409
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.55 E-value=0.046 Score=49.44 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=18.4
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-++|.|++||||||+++++.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 457889999999999999885
No 410
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.043 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999886443
No 411
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.53 E-value=0.044 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+.-++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 412
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.53 E-value=0.089 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.2
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+=|-|.|+.||||||+++.+..+.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556788999999999999986443
No 413
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.044 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887543
No 414
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=93.52 E-value=0.047 Score=46.29 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.8
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+|++++|.+++|||||+..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~ 21 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQF 21 (163)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 68999999999999998654
No 415
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.045 Score=50.26 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=39.3
Q ss_pred ceEEeccCCCcchhHHHHHHh--hh-----------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL--LF-----------QTGFDEAELKSYISVIHANVYQTIKVLYDGSKELA 106 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~--~~-----------~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~ 106 (341)
-+.|||++|+||||++|++.- .+ .+.|.+.++...+.+..+|.--++..-+...-+++
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG 99 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG 99 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence 367999999999999999862 11 13477888888888887776554444333333333
No 416
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=93.51 E-value=0.048 Score=47.14 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.9
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+|++++|.+|+|||||++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~ 20 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSY 20 (173)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998764
No 417
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.50 E-value=0.046 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999886443
No 418
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.50 E-value=0.045 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++.+--+.
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 368999999999999999987554
No 419
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.045 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.|--+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999886544
No 420
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.047 Score=47.60 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--++
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999987554
No 421
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.49 E-value=0.047 Score=47.38 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=18.4
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
||+++|.+++|||||++++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~ 21 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFC 21 (170)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999864
No 422
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.49 E-value=0.046 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--++
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887554
No 423
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.046 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
.+.|+|++||||||++|.+--
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999853
No 424
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.46 E-value=0.046 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++.+--+.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999887543
No 425
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.45 E-value=0.047 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+.-+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999887554
No 426
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.44 E-value=0.047 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++||||||+++-+--+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999887554
No 427
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.43 E-value=0.16 Score=54.48 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.7
Q ss_pred ccCCceeEEEecCCcccc--------ccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+..+.+||+||+... +..+..++++++++|||+|.++
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~ 366 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV 366 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 456778999999997632 2344556889999999999874
No 428
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.42 E-value=0.046 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++-+--++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887554
No 429
>PRK14527 adenylate kinase; Provisional
Probab=93.42 E-value=0.049 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.-++++|++||||||+++++.--|
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999886443
No 430
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.42 E-value=0.055 Score=48.01 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.0
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
++|.|+++|||||++|++.+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999999854
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.41 E-value=0.055 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+++|.|+.++||||++|++.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 47899999999999999999743
No 432
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=93.41 E-value=0.15 Score=53.58 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=45.6
Q ss_pred ccCCceeEEEecCCccccccc------ccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRK------WIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~k------W~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+++.++.+||..|+.+.+.. +..++ ++++.+++|+|.++.+ ..+.+..++... +
T Consensus 37 ~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le-------------r~l~l~~ql~~~----~ 99 (591)
T TIGR00437 37 GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE-------------RNLYLTLQLLEL----G 99 (591)
T ss_pred EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch-------------hhHHHHHHHHhc----C
Confidence 456778999999999765432 44443 4789999999998632 123333344331 3
Q ss_pred ccccCCceeEEEEec-cCcc
Q 019426 289 FFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~ 307 (341)
.|+++.+| +|+.
T Consensus 100 -------~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 100 -------IPMILALNLVDEA 112 (591)
T ss_pred -------CCEEEEEehhHHH
Confidence 68899998 9986
No 433
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.39 E-value=0.048 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999987554
No 434
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.37 E-value=0.049 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++-+--+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886543
No 435
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.37 E-value=0.049 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+.-++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999987554
No 436
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=93.37 E-value=0.05 Score=49.54 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.6
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
..+||+++|.+|+|||||++++
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~ 33 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRH 33 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHH
Confidence 4579999999999999999874
No 437
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.36 E-value=0.051 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.0
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+|+|+|..||||||+.+.+.-.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998643
No 438
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.35 E-value=0.048 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.35 E-value=0.051 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.0
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
++.|+|++||||||+++.+.-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 789999999999999998763
No 440
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.34 E-value=0.049 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988643
No 441
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.05 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
.+.|+|++|||||||++.+.-++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 789999999999999998876543
No 442
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=93.34 E-value=0.051 Score=48.56 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.3
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
+||.++|.+|+||||+++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~ 22 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALR 22 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999864
No 443
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.32 E-value=0.05 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.|--++
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999887554
No 444
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=93.32 E-value=0.05 Score=49.31 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHH-hhh
Q 019426 49 KLLLLGAGESGKSTIFKQIK-LLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~-~~~ 71 (341)
.+.|+|++||||||+++.+. .+|
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~ 53 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALY 53 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEe
Confidence 68899999999999999987 344
No 445
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.32 E-value=0.052 Score=50.87 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
-.+.|+|++|||||||+|-+--++.
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3799999999999999999876663
No 446
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.30 E-value=0.05 Score=50.71 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.|.-+
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988744
No 447
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.30 E-value=0.05 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998643
No 448
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.30 E-value=0.05 Score=50.38 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.|--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 449
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.29 E-value=0.051 Score=50.26 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999987554
No 450
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.29 E-value=0.056 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=17.4
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-+||+|++|||||+|+-++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHh
Confidence 368999999999999998875
No 451
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.27 E-value=0.057 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=20.3
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|.|.+||||||+.+.+.-..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999886543
No 452
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.27 E-value=0.052 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999987554
No 453
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.051 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.+--++
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999987554
No 454
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.27 E-value=0.056 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.7
Q ss_pred cccceEEeccCCCcchhHHHHHHhhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
...=|.|.|++||||||+++.+.-+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34557799999999999999876443
No 455
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.26 E-value=0.053 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.9
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
=++|.|++|||||||++.+.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999874
No 456
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.26 E-value=0.053 Score=56.44 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.4
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
-|++|+|++||||||++|-+--++.
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 4799999999999999999987774
No 457
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.051 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999987554
No 458
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.25 E-value=0.052 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999886543
No 459
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.25 E-value=0.051 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987543
No 460
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.24 E-value=0.057 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.3
Q ss_pred eEEeccCCCcchhHHHHHHhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~ 70 (341)
|++.|++||||||+++++.-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999987644
No 461
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.23 E-value=0.055 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=18.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
=+-|.|++|+|||||+|.+-..
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3678999999999999977533
No 462
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=93.22 E-value=0.056 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.1
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
....+++++|.+++|||||++.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l 44 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINAL 44 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 35579999999999999999864
No 463
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.052 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.9
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|.+--++
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999987554
No 464
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.21 E-value=0.052 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987443
No 465
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.053 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--++
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999987554
No 466
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.20 E-value=0.057 Score=46.24 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.++|+|++|||||||++.+--++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999987554
No 467
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.054 Score=50.09 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++|||||||++.+--+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998643
No 468
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.17 E-value=0.053 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987443
No 469
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.17 E-value=0.055 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++.+--++
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999887443
No 470
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.16 E-value=0.056 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||+|-+--+.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999887554
No 471
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.16 E-value=0.056 Score=48.43 Aligned_cols=23 Identities=39% Similarity=0.391 Sum_probs=20.1
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
-.+.|+|++|||||||+|.+--+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999988654
No 472
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.16 E-value=0.057 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.7
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+||+++|.+++|||||++++-
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~ 23 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFT 23 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999864
No 473
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.054 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999987554
No 474
>PRK14528 adenylate kinase; Provisional
Probab=93.15 E-value=0.067 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+++++|++||||||+.+.+.-.|
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986444
No 475
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.14 E-value=0.055 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
-.+.|+|++||||||+++-+--+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 37899999999999999988755
No 476
>PTZ00301 uridine kinase; Provisional
Probab=93.14 E-value=0.056 Score=49.34 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.6
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
.=|.|-|++||||||+++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l 23 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNI 23 (210)
T ss_pred EEEEEECCCcCCHHHHHHHH
Confidence 34677889999999999866
No 477
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.059 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=22.2
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
-|+.++|++||||||++|.+-..|.
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999999877763
No 478
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.14 E-value=0.056 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--++
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987554
No 479
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.13 E-value=0.056 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++-+--+.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 378999999999999999887554
No 480
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.13 E-value=0.056 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999987554
No 481
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.056 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999887554
No 482
>PRK13695 putative NTPase; Provisional
Probab=93.12 E-value=0.059 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.9
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
.|++|.|++|+||||+++++
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999974
No 483
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=93.11 E-value=0.06 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.6
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++++|.+++|||+|+.++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~ 24 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYT 24 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999998764
No 484
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.11 E-value=0.056 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999887543
No 485
>PF13173 AAA_14: AAA domain
Probab=93.10 E-value=0.062 Score=44.59 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.0
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|.|+-++||||+++|+-
T Consensus 4 ~~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999985
No 486
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.056 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999886543
No 487
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.09 E-value=0.058 Score=48.98 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887544
No 488
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.07 E-value=0.057 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 489
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.057 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++|||||||+|.+--+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998643
No 490
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.06 E-value=0.058 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|-+--++
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887544
No 491
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.06 E-value=0.06 Score=45.08 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.4
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
++|.|++|+||||+++++-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~ 20 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA 20 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 492
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.058 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999987664
No 493
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.06 E-value=0.057 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=19.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-|++.|.+||||||+.+++.-.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 36778999999999999986544
No 494
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.05 E-value=0.058 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.|.-+.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987543
No 495
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.05 E-value=0.059 Score=48.39 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.4
Q ss_pred eEEeccCCCcchhHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~ 67 (341)
+++.|+.||||||+++.+
T Consensus 4 ilI~GptGSGKTTll~~l 21 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999864
No 496
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.05 E-value=0.059 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++|||||||++.+.-++
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999887544
No 497
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.058 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.263 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999987554
No 498
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.04 E-value=0.058 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.|--+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997554
No 499
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.03 E-value=0.058 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
-.+.|+|++||||||+++-|--+
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 37899999999999999987643
No 500
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.02 E-value=0.059 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||++.+--+.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999987554
Done!