Query 019426
Match_columns 341
No_of_seqs 216 out of 1564
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cip_A Protein (guanine nucleo 100.0 1.3E-70 4.4E-75 534.4 20.2 294 21-340 6-301 (353)
2 1zcb_A G alpha I/13; GTP-bindi 100.0 8E-70 2.7E-74 530.5 19.4 299 9-340 1-310 (362)
3 1azs_C GS-alpha; complex (lyas 100.0 2.3E-69 7.8E-74 532.6 20.2 299 9-331 1-317 (402)
4 3ohm_A Guanine nucleotide-bind 100.0 1.6E-68 5.4E-73 514.2 21.8 272 43-341 3-277 (327)
5 4fid_A G protein alpha subunit 100.0 1.6E-66 5.5E-71 502.2 18.4 266 45-341 3-270 (340)
6 2xtz_A Guanine nucleotide-bind 100.0 3.1E-61 1.1E-65 468.5 22.1 282 46-340 8-297 (354)
7 1upt_A ARL1, ADP-ribosylation 99.2 2.4E-10 8.3E-15 96.3 13.4 85 202-309 38-123 (171)
8 2h57_A ADP-ribosylation factor 99.2 2.2E-10 7.6E-15 99.1 11.8 86 201-309 53-141 (190)
9 1fzq_A ADP-ribosylation factor 99.1 2.1E-10 7E-15 99.1 11.1 76 217-309 56-132 (181)
10 1m2o_B GTP-binding protein SAR 99.1 5.5E-10 1.9E-14 97.3 13.4 75 217-308 63-138 (190)
11 2x77_A ADP-ribosylation factor 99.1 2.8E-10 9.7E-15 98.2 11.4 76 217-309 62-138 (189)
12 1ksh_A ARF-like protein 2; sma 99.1 5.9E-10 2E-14 95.8 12.6 85 202-309 49-134 (186)
13 1f6b_A SAR1; gtpases, N-termin 99.1 3E-10 1E-14 99.8 10.4 74 218-308 66-140 (198)
14 1moz_A ARL1, ADP-ribosylation 99.1 2.3E-10 7.8E-15 97.9 9.2 76 217-309 58-134 (183)
15 2h17_A ADP-ribosylation factor 99.1 6.1E-10 2.1E-14 95.7 11.9 75 217-308 61-136 (181)
16 1zd9_A ADP-ribosylation factor 99.0 1.6E-09 5.3E-14 93.9 11.6 76 217-309 63-139 (188)
17 1x3s_A RAS-related protein RAB 99.0 2.7E-09 9.3E-14 91.9 10.6 72 219-307 62-134 (195)
18 1c1y_A RAS-related protein RAP 99.0 1.6E-09 5.4E-14 90.7 8.5 73 219-308 49-122 (167)
19 1z2a_A RAS-related protein RAB 98.9 3E-09 1E-13 89.0 8.9 70 220-308 53-123 (168)
20 3oes_A GTPase rhebl1; small GT 98.9 6.7E-09 2.3E-13 90.8 11.1 73 219-308 70-143 (201)
21 2a9k_A RAS-related protein RAL 98.9 3.8E-09 1.3E-13 90.0 8.3 71 221-308 66-137 (187)
22 1u8z_A RAS-related protein RAL 98.9 4.2E-09 1.4E-13 87.8 8.1 72 220-308 51-123 (168)
23 1ky3_A GTP-binding protein YPT 98.9 1.1E-08 3.7E-13 86.8 10.6 71 220-307 57-131 (182)
24 1kao_A RAP2A; GTP-binding prot 98.9 6.5E-09 2.2E-13 86.6 8.7 72 220-308 50-122 (167)
25 2bme_A RAB4A, RAS-related prot 98.9 6.8E-09 2.3E-13 88.8 8.9 70 221-308 59-129 (186)
26 1ek0_A Protein (GTP-binding pr 98.9 1E-08 3.5E-13 85.7 9.9 72 220-309 51-123 (170)
27 2efe_B Small GTP-binding prote 98.9 1.3E-08 4.3E-13 86.6 10.5 71 220-308 60-131 (181)
28 3l82_B F-box only protein 4; T 98.8 1.1E-09 3.6E-14 98.6 3.6 64 227-308 108-177 (227)
29 2bov_A RAla, RAS-related prote 98.8 5.8E-09 2E-13 90.7 8.1 71 221-308 62-133 (206)
30 2o52_A RAS-related protein RAB 98.8 4.2E-09 1.4E-13 92.3 6.6 70 221-308 74-144 (200)
31 2fh5_B SR-beta, signal recogni 98.8 9.8E-09 3.4E-13 90.3 8.9 76 220-309 53-130 (214)
32 4dsu_A GTPase KRAS, isoform 2B 98.8 1E-08 3.4E-13 87.6 8.7 71 221-308 52-123 (189)
33 1z0j_A RAB-22, RAS-related pro 98.8 2.3E-08 8E-13 83.7 10.7 71 220-308 54-125 (170)
34 1r2q_A RAS-related protein RAB 98.8 1.8E-08 6E-13 84.3 9.9 72 219-308 53-125 (170)
35 3t5g_A GTP-binding protein RHE 98.8 2.4E-08 8.2E-13 85.1 10.8 70 221-307 54-124 (181)
36 3o47_A ADP-ribosylation factor 98.8 1.6E-08 5.4E-13 96.5 10.6 86 201-309 195-281 (329)
37 3tkl_A RAS-related protein RAB 98.8 2E-08 6.8E-13 86.6 9.6 71 221-309 65-136 (196)
38 1z0f_A RAB14, member RAS oncog 98.8 1.7E-08 5.9E-13 85.3 8.9 71 220-308 63-134 (179)
39 2bcg_Y Protein YP2, GTP-bindin 98.8 3.4E-08 1.2E-12 86.3 10.8 71 220-308 56-127 (206)
40 2gf9_A RAS-related protein RAB 98.8 3.6E-08 1.2E-12 85.0 10.7 72 219-308 69-141 (189)
41 3bc1_A RAS-related protein RAB 98.8 2.6E-08 9E-13 85.1 9.7 71 221-308 70-141 (195)
42 3con_A GTPase NRAS; structural 98.8 3.5E-08 1.2E-12 84.9 10.4 71 221-308 69-140 (190)
43 1wms_A RAB-9, RAB9, RAS-relate 98.8 4.1E-08 1.4E-12 83.0 10.4 73 221-307 56-129 (177)
44 2ce2_X GTPase HRAS; signaling 98.8 2.6E-08 9E-13 82.6 8.9 72 220-308 50-122 (166)
45 1vg8_A RAS-related protein RAB 98.7 5.9E-08 2E-12 84.5 11.5 74 220-307 56-130 (207)
46 2atv_A RERG, RAS-like estrogen 98.7 2E-08 6.7E-13 87.3 8.1 71 220-308 75-146 (196)
47 2yc2_C IFT27, small RAB-relate 98.7 9.1E-09 3.1E-13 89.4 5.9 71 221-308 73-146 (208)
48 1z08_A RAS-related protein RAB 98.7 4.3E-08 1.5E-12 82.2 9.9 70 221-308 55-125 (170)
49 1zbd_A Rabphilin-3A; G protein 98.7 3.8E-08 1.3E-12 85.7 9.8 71 220-308 56-127 (203)
50 3tw8_B RAS-related protein RAB 98.7 7E-08 2.4E-12 81.6 11.0 69 221-308 58-127 (181)
51 3reg_A RHO-like small GTPase; 98.7 6.1E-08 2.1E-12 83.9 10.9 71 220-308 70-141 (194)
52 2fn4_A P23, RAS-related protei 98.7 3.7E-08 1.3E-12 83.3 8.6 71 221-308 57-128 (181)
53 2q3h_A RAS homolog gene family 98.7 5.2E-08 1.8E-12 84.7 9.7 69 221-308 68-138 (201)
54 1mh1_A RAC1; GTP-binding, GTPa 98.7 3.8E-08 1.3E-12 83.8 8.7 70 220-308 52-123 (186)
55 3dz8_A RAS-related protein RAB 98.7 1.5E-08 5.3E-13 87.6 6.2 73 218-308 69-142 (191)
56 2erx_A GTP-binding protein DI- 98.7 3.1E-08 1.1E-12 82.9 7.3 72 220-308 50-123 (172)
57 1m7b_A RND3/RHOE small GTP-bin 98.7 1.1E-07 3.8E-12 81.6 10.9 71 220-308 54-125 (184)
58 2lkc_A Translation initiation 98.7 7.7E-08 2.6E-12 81.4 9.7 69 218-308 52-121 (178)
59 1g16_A RAS-related protein SEC 98.7 5E-08 1.7E-12 81.6 8.4 69 221-307 52-121 (170)
60 2gf0_A GTP-binding protein DI- 98.7 3.4E-08 1.2E-12 85.3 7.3 72 220-308 55-128 (199)
61 3q3j_B RHO-related GTP-binding 98.7 1.2E-07 4E-12 84.1 10.9 71 220-308 74-145 (214)
62 1z06_A RAS-related protein RAB 98.7 6.7E-08 2.3E-12 83.3 8.8 71 221-308 69-141 (189)
63 2fv8_A H6, RHO-related GTP-bin 98.7 9.1E-08 3.1E-12 84.0 9.7 71 221-309 73-144 (207)
64 2fg5_A RAB-22B, RAS-related pr 98.6 1.3E-07 4.3E-12 82.0 10.4 72 219-308 70-142 (192)
65 2gco_A H9, RHO-related GTP-bin 98.6 1E-07 3.6E-12 83.2 10.0 72 220-309 72-144 (201)
66 2f7s_A C25KG, RAS-related prot 98.6 2.7E-08 9.1E-13 87.7 6.0 72 220-308 83-155 (217)
67 2a5j_A RAS-related protein RAB 98.6 8.3E-08 2.8E-12 82.9 8.9 70 221-308 70-140 (191)
68 2il1_A RAB12; G-protein, GDP, 98.6 3.9E-08 1.3E-12 85.4 6.8 70 221-308 75-145 (192)
69 1r8s_A ADP-ribosylation factor 98.6 1.1E-07 3.9E-12 79.2 9.5 76 217-309 40-116 (164)
70 2oil_A CATX-8, RAS-related pro 98.6 1.1E-07 3.7E-12 82.1 9.2 72 219-308 72-144 (193)
71 4gzl_A RAS-related C3 botulinu 98.6 1.3E-07 4.5E-12 83.0 9.7 71 221-309 78-149 (204)
72 3l2o_B F-box only protein 4; s 98.6 6.6E-09 2.2E-13 97.6 1.3 65 227-309 193-263 (312)
73 3cph_A RAS-related protein SEC 98.6 1.7E-07 5.7E-12 81.9 10.0 69 221-307 69-138 (213)
74 3l0i_B RAS-related protein RAB 98.6 7.2E-08 2.5E-12 84.0 7.1 70 221-308 82-152 (199)
75 1gwn_A RHO-related GTP-binding 98.6 2.9E-07 1E-11 81.2 10.9 71 220-308 75-146 (205)
76 3ihw_A Centg3; RAS, centaurin, 98.6 2.2E-07 7.6E-12 80.3 9.9 65 221-307 67-132 (184)
77 2ew1_A RAS-related protein RAB 98.6 1.4E-07 4.9E-12 83.0 8.7 70 221-308 75-145 (201)
78 4bas_A ADP-ribosylation factor 98.6 2.6E-07 8.9E-12 79.6 9.9 92 202-309 50-142 (199)
79 3gj0_A GTP-binding nuclear pro 98.6 1.2E-07 4.2E-12 83.9 7.8 73 218-309 61-134 (221)
80 2j1l_A RHO-related GTP-binding 98.5 1.1E-07 3.9E-12 84.0 7.4 71 221-309 82-153 (214)
81 3q85_A GTP-binding protein REM 98.5 1.7E-07 5.8E-12 78.6 7.5 70 221-307 51-122 (169)
82 2wkq_A NPH1-1, RAS-related C3 98.5 6.1E-07 2.1E-11 83.8 11.9 70 221-308 203-273 (332)
83 1zj6_A ADP-ribosylation factor 98.5 2.6E-07 8.9E-12 79.4 8.4 75 217-308 56-131 (187)
84 2nzj_A GTP-binding protein REM 98.5 4.5E-07 1.6E-11 76.2 9.5 71 221-308 52-125 (175)
85 2b6h_A ADP-ribosylation factor 98.5 3.1E-07 1.1E-11 79.7 8.6 86 201-309 59-145 (192)
86 3lvq_E ARF-GAP with SH3 domain 98.5 5.7E-07 2E-11 89.9 11.4 87 200-309 351-438 (497)
87 2p5s_A RAS and EF-hand domain 98.5 1.8E-07 6.2E-12 81.4 6.7 70 220-307 76-146 (199)
88 4djt_A GTP-binding nuclear pro 98.4 5.8E-07 2E-11 79.1 8.6 70 221-308 61-131 (218)
89 3t1o_A Gliding protein MGLA; G 98.4 3.6E-07 1.2E-11 78.3 6.9 118 178-309 32-150 (198)
90 2dyk_A GTP-binding protein; GT 98.4 1E-06 3.5E-11 73.0 8.8 39 218-256 46-91 (161)
91 3th5_A RAS-related C3 botulinu 97.7 4.4E-08 1.5E-12 85.6 0.0 70 221-308 78-148 (204)
92 2qu8_A Putative nucleolar GTP- 98.2 5.7E-06 2E-10 73.6 10.6 75 218-309 73-157 (228)
93 3dpu_A RAB family protein; roc 98.1 4.8E-06 1.6E-10 84.3 8.4 68 219-308 96-164 (535)
94 2xtp_A GTPase IMAP family memb 98.0 3.7E-05 1.3E-09 69.8 12.1 74 217-307 67-152 (260)
95 3r7w_B Gtpase2, GTP-binding pr 98.0 5.3E-06 1.8E-10 79.3 6.0 71 220-309 45-121 (331)
96 3def_A T7I23.11 protein; chlor 98.0 2.8E-05 9.7E-10 71.1 10.1 40 217-256 80-128 (262)
97 3lxx_A GTPase IMAP family memb 98.0 2.3E-05 8E-10 70.3 9.3 41 218-258 75-126 (239)
98 2fu5_C RAS-related protein RAB 98.0 1.3E-05 4.4E-10 68.0 6.8 70 221-308 57-127 (183)
99 2g6b_A RAS-related protein RAB 97.9 1.8E-05 6.1E-10 66.7 7.1 71 220-308 59-130 (180)
100 3k53_A Ferrous iron transport 97.9 2.1E-05 7.2E-10 72.3 8.1 68 217-307 46-122 (271)
101 2hup_A RAS-related protein RAB 97.9 1.3E-05 4.5E-10 69.9 6.3 70 221-308 78-148 (201)
102 2hxs_A RAB-26, RAS-related pro 97.9 1.4E-05 4.8E-10 67.2 6.0 36 221-256 56-91 (178)
103 3pqc_A Probable GTP-binding pr 97.9 4.1E-05 1.4E-09 65.2 8.8 22 46-67 22-43 (195)
104 2atx_A Small GTP binding prote 97.8 7.4E-05 2.5E-09 64.0 8.6 70 220-308 65-136 (194)
105 3llu_A RAS-related GTP-binding 97.8 4.8E-05 1.6E-09 65.8 7.3 71 219-308 67-143 (196)
106 3cpj_B GTP-binding protein YPT 97.7 5.5E-05 1.9E-09 66.9 7.4 70 221-308 62-132 (223)
107 3q72_A GTP-binding protein RAD 97.7 5.5E-05 1.9E-09 62.8 7.0 72 220-308 48-120 (166)
108 3kkq_A RAS-related protein M-R 97.7 3.6E-05 1.2E-09 65.2 5.5 72 220-308 65-137 (183)
109 2j0v_A RAC-like GTP-binding pr 97.7 5.4E-05 1.9E-09 66.0 6.1 72 220-309 56-128 (212)
110 3p26_A Elongation factor 1 alp 97.6 0.00038 1.3E-08 69.4 12.6 49 202-256 98-146 (483)
111 2y8e_A RAB-protein 6, GH09086P 97.6 8.4E-05 2.9E-09 62.2 6.6 71 220-308 62-133 (179)
112 3r7w_A Gtpase1, GTP-binding pr 97.6 8.7E-05 3E-09 69.7 7.1 82 202-308 38-129 (307)
113 4dkx_A RAS-related protein RAB 97.6 7.3E-05 2.5E-09 66.8 6.0 72 219-308 60-132 (216)
114 3bwd_D RAC-like GTP-binding pr 97.6 5.4E-05 1.8E-09 63.8 4.6 72 220-309 55-127 (182)
115 2elf_A Protein translation elo 97.5 0.00018 6.2E-09 69.6 8.5 50 200-256 45-94 (370)
116 3c5c_A RAS-like protein 12; GD 97.5 0.00013 4.4E-09 62.6 6.7 73 218-308 66-141 (187)
117 2ged_A SR-beta, signal recogni 97.5 5.1E-05 1.7E-09 64.9 3.2 72 221-309 91-171 (193)
118 3clv_A RAB5 protein, putative; 97.5 0.00027 9.3E-09 60.0 7.7 65 221-305 93-158 (208)
119 1nrj_B SR-beta, signal recogni 97.4 8.4E-05 2.9E-09 65.0 3.7 73 221-310 55-136 (218)
120 2e87_A Hypothetical protein PH 97.4 0.0018 6.2E-08 61.8 13.1 75 218-309 211-295 (357)
121 3t5d_A Septin-7; GTP-binding p 97.4 0.00047 1.6E-08 63.3 8.4 22 46-67 7-28 (274)
122 3geh_A MNME, tRNA modification 97.3 0.0016 5.3E-08 64.9 11.6 39 218-256 269-315 (462)
123 1ega_A Protein (GTP-binding pr 97.3 0.0018 6.2E-08 60.5 11.2 67 219-308 54-130 (301)
124 3cbq_A GTP-binding protein REM 97.2 0.00022 7.7E-09 61.7 3.8 71 221-308 72-144 (195)
125 2iwr_A Centaurin gamma 1; ANK 97.1 0.00098 3.4E-08 55.9 7.0 65 220-307 53-121 (178)
126 2zej_A Dardarin, leucine-rich 97.0 0.00052 1.8E-08 58.5 4.5 72 220-309 55-127 (184)
127 1kk1_A EIF2gamma; initiation o 96.9 0.0016 5.4E-08 63.4 7.9 68 221-308 83-151 (410)
128 3lxw_A GTPase IMAP family memb 96.7 0.0038 1.3E-07 56.4 8.2 74 217-307 66-152 (247)
129 3tr5_A RF-3, peptide chain rel 96.7 0.0031 1.1E-07 63.8 7.6 70 217-308 78-148 (528)
130 2g3y_A GTP-binding protein GEM 96.6 0.0029 1E-07 55.9 6.4 71 221-308 87-159 (211)
131 2f9l_A RAB11B, member RAS onco 96.6 0.0042 1.5E-07 53.4 6.9 69 221-307 54-123 (199)
132 3a1s_A Iron(II) transport prot 96.5 0.0047 1.6E-07 56.4 7.1 67 217-307 48-123 (258)
133 1u0l_A Probable GTPase ENGC; p 96.4 0.0069 2.4E-07 56.5 7.9 33 222-256 64-96 (301)
134 3iby_A Ferrous iron transport 96.4 0.0058 2E-07 55.7 6.8 68 217-308 44-124 (256)
135 2h5e_A Peptide chain release f 96.3 0.0059 2E-07 61.7 7.2 71 217-309 78-149 (529)
136 1d2e_A Elongation factor TU (E 96.3 0.006 2E-07 59.1 6.8 79 202-308 53-133 (397)
137 2hjg_A GTP-binding protein ENG 96.2 0.0034 1.2E-07 61.6 4.7 70 217-308 47-125 (436)
138 2c78_A Elongation factor TU-A; 96.2 0.0079 2.7E-07 58.3 7.1 70 217-308 71-142 (405)
139 1zun_B Sulfate adenylate trans 96.1 0.013 4.3E-07 57.5 8.4 40 217-256 100-139 (434)
140 3c5h_A Glucocorticoid receptor 96.1 0.0049 1.7E-07 55.9 4.9 66 228-308 125-212 (255)
141 2cjw_A GTP-binding protein GEM 96.1 0.0053 1.8E-07 52.8 4.9 71 221-308 56-128 (192)
142 2wjg_A FEOB, ferrous iron tran 96.1 0.0071 2.4E-07 50.9 5.6 68 217-308 50-126 (188)
143 2wji_A Ferrous iron transport 96.0 0.0094 3.2E-07 49.5 6.0 66 218-307 47-121 (165)
144 1dar_A EF-G, elongation factor 96.0 0.0063 2.2E-07 63.4 5.8 70 217-308 73-143 (691)
145 4dhe_A Probable GTP-binding pr 96.0 0.0093 3.2E-07 51.8 5.9 70 218-309 76-159 (223)
146 3j2k_7 ERF3, eukaryotic polype 96.0 0.0085 2.9E-07 59.0 6.1 50 201-256 81-130 (439)
147 1mky_A Probable GTP-binding pr 95.9 0.0062 2.1E-07 59.8 5.1 40 217-256 45-93 (439)
148 3iev_A GTP-binding protein ERA 95.9 0.017 5.9E-07 53.9 7.8 69 218-307 55-135 (308)
149 1f60_A Elongation factor EEF1A 95.9 0.0087 3E-07 59.2 5.9 40 217-256 81-120 (458)
150 4gp7_A Metallophosphoesterase; 95.9 0.0031 1E-07 53.7 2.1 18 49-66 11-28 (171)
151 1jny_A EF-1-alpha, elongation 95.8 0.0071 2.4E-07 59.4 5.0 40 217-256 80-119 (435)
152 3gee_A MNME, tRNA modification 95.8 0.015 5E-07 58.1 7.3 73 217-309 277-358 (476)
153 1ye8_A Protein THEP1, hypothet 95.8 0.0035 1.2E-07 54.1 2.3 23 49-71 2-24 (178)
154 1zp6_A Hypothetical protein AT 95.8 0.0034 1.2E-07 53.6 2.2 23 49-71 11-33 (191)
155 1r5b_A Eukaryotic peptide chai 95.8 0.007 2.4E-07 60.1 4.7 51 200-256 106-156 (467)
156 2xex_A Elongation factor G; GT 95.7 0.01 3.4E-07 61.9 5.9 70 217-308 71-141 (693)
157 1lvg_A Guanylate kinase, GMP k 95.7 0.0044 1.5E-07 54.0 2.8 24 48-71 5-28 (198)
158 3i8s_A Ferrous iron transport 95.7 0.013 4.5E-07 53.7 6.1 68 217-308 46-126 (274)
159 2gj8_A MNME, tRNA modification 95.7 0.008 2.7E-07 50.6 4.2 40 217-257 48-96 (172)
160 3tr0_A Guanylate kinase, GMP k 95.7 0.0039 1.3E-07 53.7 2.3 23 49-71 9-31 (205)
161 1kgd_A CASK, peripheral plasma 95.7 0.0041 1.4E-07 53.2 2.3 23 49-71 7-29 (180)
162 2zej_A Dardarin, leucine-rich 95.7 0.0044 1.5E-07 52.6 2.3 22 47-68 2-23 (184)
163 1oix_A RAS-related protein RAB 95.6 0.0042 1.4E-07 53.3 2.2 36 221-256 78-113 (191)
164 3a00_A Guanylate kinase, GMP k 95.6 0.0047 1.6E-07 53.0 2.4 22 50-71 4-25 (186)
165 3c8u_A Fructokinase; YP_612366 95.6 0.0054 1.9E-07 53.6 2.8 26 46-71 21-46 (208)
166 4dcu_A GTP-binding protein ENG 95.5 0.0086 2.9E-07 59.0 4.3 70 217-308 67-145 (456)
167 1svi_A GTP-binding protein YSX 95.5 0.015 5.1E-07 49.2 5.3 67 222-310 70-150 (195)
168 2f9l_A RAB11B, member RAS onco 95.5 0.0051 1.7E-07 52.9 2.3 23 46-68 4-26 (199)
169 1oix_A RAS-related protein RAB 95.5 0.024 8.1E-07 48.5 6.6 22 46-67 28-49 (191)
170 3b1v_A Ferrous iron uptake tra 95.5 0.017 5.9E-07 53.1 5.9 64 220-307 48-120 (272)
171 3cbq_A GTP-binding protein REM 95.5 0.0052 1.8E-07 52.9 2.1 23 45-67 21-43 (195)
172 1kag_A SKI, shikimate kinase I 95.5 0.0057 1.9E-07 51.3 2.3 24 48-71 5-28 (173)
173 1znw_A Guanylate kinase, GMP k 95.4 0.0057 1.9E-07 53.4 2.3 23 49-71 22-44 (207)
174 1wf3_A GTP-binding protein; GT 95.4 0.027 9.1E-07 52.6 7.0 72 218-309 52-132 (301)
175 2ged_A SR-beta, signal recogni 95.4 0.008 2.7E-07 50.9 3.1 24 45-68 46-69 (193)
176 3q72_A GTP-binding protein RAD 95.4 0.0062 2.1E-07 50.0 2.3 21 47-67 2-22 (166)
177 2ehv_A Hypothetical protein PH 95.4 0.0058 2E-07 54.1 2.3 20 49-68 32-51 (251)
178 2bdt_A BH3686; alpha-beta prot 95.3 0.0067 2.3E-07 51.8 2.3 21 49-69 4-24 (189)
179 2wjg_A FEOB, ferrous iron tran 95.3 0.0068 2.3E-07 51.0 2.4 22 47-68 7-28 (188)
180 2wji_A Ferrous iron transport 95.3 0.007 2.4E-07 50.4 2.4 22 47-68 3-24 (165)
181 3asz_A Uridine kinase; cytidin 95.3 0.0076 2.6E-07 52.3 2.7 25 48-72 7-31 (211)
182 2rdo_7 EF-G, elongation factor 95.3 0.021 7.2E-07 59.6 6.4 66 221-308 82-148 (704)
183 1h65_A Chloroplast outer envel 95.3 0.013 4.4E-07 53.4 4.2 36 32-67 24-59 (270)
184 3tif_A Uncharacterized ABC tra 95.3 0.0069 2.4E-07 54.6 2.3 23 49-71 33-55 (235)
185 2j41_A Guanylate kinase; GMP, 95.2 0.0076 2.6E-07 51.8 2.4 23 49-71 8-30 (207)
186 3lw7_A Adenylate kinase relate 95.2 0.0076 2.6E-07 49.8 2.3 19 49-67 3-21 (179)
187 1htw_A HI0065; nucleotide-bind 95.2 0.008 2.7E-07 50.9 2.3 23 49-71 35-57 (158)
188 1z6g_A Guanylate kinase; struc 95.2 0.0086 2.9E-07 53.0 2.6 24 48-71 24-47 (218)
189 3kb2_A SPBC2 prophage-derived 95.2 0.0087 3E-07 49.8 2.5 22 49-70 3-24 (173)
190 4eun_A Thermoresistant glucoki 95.1 0.0081 2.8E-07 52.1 2.3 23 48-70 30-52 (200)
191 2hxs_A RAB-26, RAS-related pro 95.1 0.0082 2.8E-07 49.9 2.3 23 46-68 5-27 (178)
192 3izy_P Translation initiation 95.1 0.016 5.4E-07 58.7 4.7 67 220-308 51-118 (537)
193 1s96_A Guanylate kinase, GMP k 95.1 0.0081 2.8E-07 53.6 2.3 24 48-71 17-40 (219)
194 1xzp_A Probable tRNA modificat 95.1 0.025 8.4E-07 56.5 6.0 68 217-308 287-364 (482)
195 1n0u_A EF-2, elongation factor 95.1 0.016 5.6E-07 61.7 4.9 66 220-307 97-163 (842)
196 2bbw_A Adenylate kinase 4, AK4 95.1 0.0084 2.9E-07 53.7 2.3 22 48-69 28-49 (246)
197 4a74_A DNA repair and recombin 95.1 0.0082 2.8E-07 52.4 2.2 21 49-69 27-47 (231)
198 1ly1_A Polynucleotide kinase; 95.1 0.0094 3.2E-07 49.9 2.4 21 49-69 4-24 (181)
199 2pcj_A ABC transporter, lipopr 95.1 0.0084 2.9E-07 53.6 2.2 23 49-71 32-54 (224)
200 3sop_A Neuronal-specific septi 95.0 0.0085 2.9E-07 55.2 2.3 24 48-71 3-26 (270)
201 3tau_A Guanylate kinase, GMP k 95.0 0.012 3.9E-07 51.6 3.0 23 49-71 10-32 (208)
202 1zo1_I IF2, translation initia 95.0 0.014 4.9E-07 58.6 4.0 70 217-308 47-117 (501)
203 2p5t_B PEZT; postsegregational 95.0 0.0096 3.3E-07 53.8 2.5 27 45-71 30-56 (253)
204 2hf9_A Probable hydrogenase ni 95.0 0.022 7.4E-07 49.7 4.7 24 45-68 36-59 (226)
205 1wb1_A Translation elongation 95.0 0.014 4.9E-07 58.1 3.9 70 217-308 69-139 (482)
206 1qhx_A CPT, protein (chloramph 95.0 0.01 3.4E-07 49.9 2.4 23 49-71 5-27 (178)
207 3tlx_A Adenylate kinase 2; str 95.0 0.021 7.2E-07 51.3 4.7 28 44-71 26-53 (243)
208 1knq_A Gluconate kinase; ALFA/ 95.0 0.0098 3.3E-07 50.0 2.3 22 49-70 10-31 (175)
209 3uie_A Adenylyl-sulfate kinase 95.0 0.0097 3.3E-07 51.6 2.3 23 47-69 25-47 (200)
210 3bwd_D RAC-like GTP-binding pr 95.0 0.01 3.5E-07 49.4 2.4 24 45-68 6-29 (182)
211 2iwr_A Centaurin gamma 1; ANK 95.0 0.0089 3E-07 49.8 2.0 23 46-68 6-28 (178)
212 2y8e_A RAB-protein 6, GH09086P 94.9 0.0099 3.4E-07 49.2 2.2 23 46-68 13-35 (179)
213 3kkq_A RAS-related protein M-R 94.9 0.01 3.5E-07 49.7 2.4 24 45-68 16-39 (183)
214 1cke_A CK, MSSA, protein (cyti 94.9 0.012 4E-07 51.6 2.7 24 48-71 6-29 (227)
215 3b85_A Phosphate starvation-in 94.9 0.01 3.5E-07 52.5 2.3 22 49-70 24-45 (208)
216 1g7s_A Translation initiation 94.9 0.046 1.6E-06 55.9 7.5 66 221-308 70-136 (594)
217 2onk_A Molybdate/tungstate ABC 94.9 0.01 3.5E-07 53.7 2.3 23 49-71 26-48 (240)
218 3t61_A Gluconokinase; PSI-biol 94.9 0.011 3.8E-07 51.1 2.4 23 48-70 19-41 (202)
219 1sgw_A Putative ABC transporte 94.9 0.01 3.6E-07 52.8 2.3 23 49-71 37-59 (214)
220 2cbz_A Multidrug resistance-as 94.9 0.01 3.6E-07 53.4 2.3 23 49-71 33-55 (237)
221 2g6b_A RAS-related protein RAB 94.9 0.011 3.7E-07 49.2 2.3 23 45-67 8-30 (180)
222 3clv_A RAB5 protein, putative; 94.9 0.011 3.7E-07 49.8 2.3 23 46-68 6-28 (208)
223 3gfo_A Cobalt import ATP-bindi 94.8 0.01 3.6E-07 54.9 2.3 23 49-71 36-58 (275)
224 1nrj_B SR-beta, signal recogni 94.8 0.011 3.7E-07 51.3 2.3 25 44-68 9-33 (218)
225 1lw7_A Transcriptional regulat 94.8 0.011 3.8E-07 56.4 2.5 27 47-73 170-196 (365)
226 1r8s_A ADP-ribosylation factor 94.8 0.012 4.1E-07 48.2 2.3 20 48-67 1-20 (164)
227 1g6h_A High-affinity branched- 94.8 0.011 3.7E-07 53.9 2.3 23 49-71 35-57 (257)
228 1b0u_A Histidine permease; ABC 94.8 0.011 3.8E-07 54.1 2.3 23 49-71 34-56 (262)
229 2ff7_A Alpha-hemolysin translo 94.8 0.011 3.8E-07 53.6 2.3 23 49-71 37-59 (247)
230 3izq_1 HBS1P, elongation facto 94.8 0.034 1.2E-06 57.1 6.2 40 217-256 241-280 (611)
231 1ji0_A ABC transporter; ATP bi 94.8 0.011 3.8E-07 53.3 2.3 23 49-71 34-56 (240)
232 2qor_A Guanylate kinase; phosp 94.8 0.012 4.1E-07 51.1 2.4 23 48-70 13-35 (204)
233 1zj6_A ADP-ribosylation factor 94.8 0.012 4.1E-07 49.7 2.3 24 45-68 14-37 (187)
234 1svi_A GTP-binding protein YSX 94.8 0.012 4E-07 49.9 2.2 23 46-68 22-44 (195)
235 2cxx_A Probable GTP-binding pr 94.8 0.012 4E-07 49.4 2.2 20 48-67 2-21 (190)
236 2gj8_A MNME, tRNA modification 94.7 0.012 4.1E-07 49.4 2.3 23 46-68 3-25 (172)
237 1mv5_A LMRA, multidrug resista 94.7 0.012 4E-07 53.2 2.3 23 49-71 30-52 (243)
238 3c5c_A RAS-like protein 12; GD 94.7 0.013 4.3E-07 49.9 2.3 24 45-68 19-42 (187)
239 4g1u_C Hemin import ATP-bindin 94.7 0.012 4.1E-07 54.1 2.3 23 49-71 39-61 (266)
240 2pze_A Cystic fibrosis transme 94.7 0.012 4.2E-07 52.6 2.3 23 49-71 36-58 (229)
241 2d2e_A SUFC protein; ABC-ATPas 94.7 0.012 4.2E-07 53.4 2.3 22 49-70 31-52 (250)
242 3cb4_D GTP-binding protein LEP 94.7 0.03 1E-06 57.4 5.5 67 220-308 70-137 (599)
243 3llu_A RAS-related GTP-binding 94.7 0.013 4.3E-07 50.2 2.3 22 45-66 18-39 (196)
244 3lnc_A Guanylate kinase, GMP k 94.7 0.01 3.5E-07 52.5 1.7 23 49-71 29-52 (231)
245 1vpl_A ABC transporter, ATP-bi 94.7 0.012 4.2E-07 53.7 2.3 23 49-71 43-65 (256)
246 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.4E-07 50.5 2.3 21 49-69 3-23 (204)
247 2qi9_C Vitamin B12 import ATP- 94.6 0.013 4.4E-07 53.4 2.3 23 49-71 28-50 (249)
248 2b6h_A ADP-ribosylation factor 94.6 0.013 4.6E-07 50.0 2.3 23 45-67 27-49 (192)
249 2olj_A Amino acid ABC transpor 94.6 0.013 4.5E-07 53.8 2.3 23 49-71 52-74 (263)
250 2ixe_A Antigen peptide transpo 94.6 0.013 4.5E-07 53.9 2.3 23 49-71 47-69 (271)
251 3t1o_A Gliding protein MGLA; G 94.6 0.014 4.8E-07 49.1 2.3 23 45-67 12-34 (198)
252 3fb4_A Adenylate kinase; psych 94.6 0.014 4.8E-07 50.8 2.3 21 49-69 2-22 (216)
253 3vaa_A Shikimate kinase, SK; s 94.6 0.014 4.7E-07 50.5 2.3 24 48-71 26-49 (199)
254 3n70_A Transport activator; si 94.6 0.034 1.1E-06 45.7 4.5 40 30-69 7-46 (145)
255 1via_A Shikimate kinase; struc 94.6 0.015 5E-07 49.1 2.3 22 49-70 6-27 (175)
256 3cm0_A Adenylate kinase; ATP-b 94.6 0.015 5.2E-07 49.2 2.5 22 48-69 5-26 (186)
257 2ghi_A Transport protein; mult 94.5 0.014 4.7E-07 53.4 2.3 23 49-71 48-70 (260)
258 1lnz_A SPO0B-associated GTP-bi 94.5 0.025 8.7E-07 53.9 4.3 74 221-308 206-288 (342)
259 2nq2_C Hypothetical ABC transp 94.5 0.014 4.8E-07 53.2 2.4 22 49-70 33-54 (253)
260 2yz2_A Putative ABC transporte 94.5 0.014 4.9E-07 53.4 2.3 23 49-71 35-57 (266)
261 3ec2_A DNA replication protein 94.5 0.015 5.1E-07 49.3 2.2 23 48-70 39-61 (180)
262 1nks_A Adenylate kinase; therm 94.5 0.016 5.3E-07 49.0 2.3 22 49-70 3-24 (194)
263 2ywe_A GTP-binding protein LEP 94.5 0.04 1.4E-06 56.5 5.7 66 221-308 73-139 (600)
264 2zu0_C Probable ATP-dependent 94.5 0.015 5E-07 53.4 2.3 22 49-70 48-69 (267)
265 2jeo_A Uridine-cytidine kinase 94.5 0.016 5.4E-07 52.0 2.4 24 48-71 26-49 (245)
266 1jjv_A Dephospho-COA kinase; P 94.4 0.016 5.6E-07 50.1 2.4 21 49-69 4-24 (206)
267 2ihy_A ABC transporter, ATP-bi 94.4 0.015 5.1E-07 53.8 2.3 23 49-71 49-71 (279)
268 3dl0_A Adenylate kinase; phosp 94.4 0.016 5.5E-07 50.5 2.3 21 49-69 2-22 (216)
269 1pui_A ENGB, probable GTP-bind 94.4 0.012 4E-07 50.6 1.5 22 46-67 25-46 (210)
270 2eyu_A Twitching motility prot 94.4 0.018 6.1E-07 52.7 2.7 24 48-71 26-49 (261)
271 1kht_A Adenylate kinase; phosp 94.4 0.017 5.9E-07 48.7 2.4 23 48-70 4-26 (192)
272 2jaq_A Deoxyguanosine kinase; 94.3 0.018 6.1E-07 49.2 2.4 21 49-69 2-22 (205)
273 2pjz_A Hypothetical protein ST 94.3 0.016 5.6E-07 53.1 2.3 22 49-70 32-53 (263)
274 3trf_A Shikimate kinase, SK; a 94.3 0.018 6.1E-07 48.8 2.3 23 48-70 6-28 (185)
275 3aez_A Pantothenate kinase; tr 94.3 0.019 6.5E-07 54.0 2.6 25 48-72 91-115 (312)
276 2i3b_A HCR-ntpase, human cance 94.2 0.019 6.4E-07 50.0 2.4 22 49-70 3-24 (189)
277 2qnr_A Septin-2, protein NEDD5 94.2 0.016 5.4E-07 54.1 2.0 23 46-68 17-39 (301)
278 1odf_A YGR205W, hypothetical 3 94.2 0.028 9.5E-07 52.3 3.7 27 45-71 29-55 (290)
279 3qq5_A Small GTP-binding prote 94.2 0.083 2.8E-06 51.8 7.3 65 222-310 84-156 (423)
280 2v9p_A Replication protein E1; 94.2 0.023 7.7E-07 53.5 3.0 24 48-71 127-150 (305)
281 2cjw_A GTP-binding protein GEM 94.2 0.019 6.3E-07 49.3 2.3 23 46-68 5-27 (192)
282 2rhm_A Putative kinase; P-loop 94.2 0.019 6.6E-07 48.6 2.3 23 48-70 6-28 (193)
283 1ex7_A Guanylate kinase; subst 94.2 0.021 7E-07 49.8 2.5 19 50-68 4-22 (186)
284 2fu5_C RAS-related protein RAB 94.2 0.014 4.6E-07 48.9 1.3 23 46-68 7-29 (183)
285 4bas_A ADP-ribosylation factor 94.1 0.02 6.8E-07 48.5 2.3 23 45-67 15-37 (199)
286 2iyv_A Shikimate kinase, SK; t 94.1 0.022 7.5E-07 48.2 2.5 23 49-71 4-26 (184)
287 1tev_A UMP-CMP kinase; ploop, 94.1 0.021 7.3E-07 48.2 2.4 23 48-70 4-26 (196)
288 3sjy_A Translation initiation 94.1 0.057 2E-06 52.2 5.8 69 221-309 75-144 (403)
289 4dkx_A RAS-related protein RAB 94.1 0.021 7.1E-07 50.7 2.4 22 46-67 12-33 (216)
290 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.021 7.1E-07 49.6 2.3 21 49-69 25-45 (235)
291 2bwj_A Adenylate kinase 5; pho 94.0 0.026 8.9E-07 48.1 2.9 25 47-71 12-36 (199)
292 2pt5_A Shikimate kinase, SK; a 94.0 0.023 7.8E-07 47.2 2.4 22 49-70 2-23 (168)
293 2hup_A RAS-related protein RAB 94.0 0.019 6.5E-07 49.4 1.9 24 44-67 26-49 (201)
294 3nh6_A ATP-binding cassette SU 94.0 0.016 5.4E-07 54.5 1.5 23 49-71 82-104 (306)
295 3iij_A Coilin-interacting nucl 94.0 0.024 8.1E-07 47.9 2.4 23 48-70 12-34 (180)
296 3fvq_A Fe(3+) IONS import ATP- 93.9 0.021 7E-07 55.0 2.2 22 49-70 32-53 (359)
297 1aky_A Adenylate kinase; ATP:A 93.9 0.024 8.3E-07 49.6 2.5 25 47-71 4-28 (220)
298 2bbs_A Cystic fibrosis transme 93.9 0.021 7.2E-07 53.2 2.2 23 49-71 66-88 (290)
299 2atx_A Small GTP binding prote 93.9 0.021 7.3E-07 48.3 2.1 23 46-68 17-39 (194)
300 4e22_A Cytidylate kinase; P-lo 93.9 0.022 7.6E-07 51.5 2.3 21 48-68 28-48 (252)
301 2plr_A DTMP kinase, probable t 93.9 0.024 8.4E-07 48.6 2.4 23 48-70 5-27 (213)
302 3ney_A 55 kDa erythrocyte memb 93.9 0.023 8E-07 50.0 2.3 23 49-71 21-43 (197)
303 3umf_A Adenylate kinase; rossm 93.9 0.019 6.3E-07 51.3 1.6 22 50-71 32-53 (217)
304 2qt1_A Nicotinamide riboside k 93.9 0.024 8.3E-07 49.1 2.3 24 48-71 22-45 (207)
305 1e6c_A Shikimate kinase; phosp 93.9 0.026 8.8E-07 47.0 2.4 22 49-70 4-25 (173)
306 2ze6_A Isopentenyl transferase 93.8 0.024 8.1E-07 51.4 2.3 20 49-68 3-22 (253)
307 1e4v_A Adenylate kinase; trans 93.8 0.025 8.6E-07 49.4 2.4 23 49-71 2-24 (214)
308 1z47_A CYSA, putative ABC-tran 93.8 0.023 7.9E-07 54.5 2.3 22 49-70 43-64 (355)
309 2c95_A Adenylate kinase 1; tra 93.8 0.028 9.6E-07 47.8 2.6 26 46-71 8-33 (196)
310 1y63_A LMAJ004144AAA protein; 93.8 0.027 9.1E-07 48.1 2.4 23 48-70 11-33 (184)
311 2yyz_A Sugar ABC transporter, 93.8 0.024 8.2E-07 54.5 2.3 23 49-71 31-53 (359)
312 1rz3_A Hypothetical protein rb 93.7 0.026 9E-07 48.9 2.3 23 47-69 22-44 (201)
313 3avx_A Elongation factor TS, e 93.7 0.043 1.5E-06 60.4 4.4 40 217-256 355-394 (1289)
314 2j0v_A RAC-like GTP-binding pr 93.7 0.026 8.8E-07 48.6 2.3 23 46-68 8-30 (212)
315 1gvn_B Zeta; postsegregational 93.7 0.026 9E-07 52.2 2.4 23 47-69 33-55 (287)
316 3rlf_A Maltose/maltodextrin im 93.7 0.025 8.6E-07 54.8 2.3 23 49-71 31-53 (381)
317 2pbr_A DTMP kinase, thymidylat 93.7 0.029 9.9E-07 47.4 2.4 21 49-69 2-22 (195)
318 2vli_A Antibiotic resistance p 93.7 0.025 8.4E-07 47.6 2.0 22 48-69 6-27 (183)
319 2it1_A 362AA long hypothetical 93.7 0.026 8.7E-07 54.4 2.3 22 49-70 31-52 (362)
320 1g29_1 MALK, maltose transport 93.6 0.026 8.8E-07 54.5 2.3 22 49-70 31-52 (372)
321 1qf9_A UMP/CMP kinase, protein 93.6 0.029 9.7E-07 47.4 2.3 22 49-70 8-29 (194)
322 3kta_A Chromosome segregation 93.6 0.031 1.1E-06 47.2 2.6 23 49-71 28-50 (182)
323 1v43_A Sugar-binding transport 93.6 0.026 8.9E-07 54.5 2.3 23 49-71 39-61 (372)
324 1sq5_A Pantothenate kinase; P- 93.6 0.064 2.2E-06 49.9 5.0 24 48-71 81-104 (308)
325 2f1r_A Molybdopterin-guanine d 93.6 0.02 6.8E-07 49.1 1.3 23 49-71 4-26 (171)
326 3co5_A Putative two-component 93.6 0.056 1.9E-06 44.3 4.0 24 45-68 25-48 (143)
327 2z0h_A DTMP kinase, thymidylat 93.6 0.03 1E-06 47.6 2.4 22 49-70 2-23 (197)
328 2cxx_A Probable GTP-binding pr 93.6 0.019 6.6E-07 48.1 1.2 37 222-258 45-96 (190)
329 3tui_C Methionine import ATP-b 93.6 0.029 9.8E-07 54.1 2.5 23 49-71 56-78 (366)
330 2g3y_A GTP-binding protein GEM 93.6 0.028 9.7E-07 49.5 2.3 24 45-68 35-58 (211)
331 2cvh_A DNA repair and recombin 93.5 0.029 1E-06 48.5 2.3 21 49-69 22-42 (220)
332 2qag_A Septin-2, protein NEDD5 93.5 0.043 1.5E-06 52.5 3.7 24 44-67 34-57 (361)
333 2pez_A Bifunctional 3'-phospho 93.5 0.032 1.1E-06 47.1 2.4 23 48-70 6-28 (179)
334 1zak_A Adenylate kinase; ATP:A 93.5 0.031 1.1E-06 49.0 2.4 24 48-71 6-29 (222)
335 1zuh_A Shikimate kinase; alpha 93.5 0.033 1.1E-06 46.4 2.4 22 49-70 9-30 (168)
336 2qtf_A Protein HFLX, GTP-bindi 93.4 0.061 2.1E-06 51.6 4.5 76 218-310 223-308 (364)
337 2cdn_A Adenylate kinase; phosp 93.4 0.034 1.1E-06 47.9 2.5 25 47-71 20-44 (201)
338 2wsm_A Hydrogenase expression/ 93.4 0.076 2.6E-06 46.0 4.8 23 45-67 28-50 (221)
339 3d31_A Sulfate/molybdate ABC t 93.4 0.022 7.7E-07 54.5 1.4 23 49-71 28-50 (348)
340 1uf9_A TT1252 protein; P-loop, 93.4 0.032 1.1E-06 47.6 2.3 24 47-70 8-31 (203)
341 1zd8_A GTP:AMP phosphotransfer 93.4 0.032 1.1E-06 49.1 2.4 22 48-69 8-29 (227)
342 2v54_A DTMP kinase, thymidylat 93.3 0.032 1.1E-06 47.7 2.2 23 48-70 5-27 (204)
343 1nn5_A Similar to deoxythymidy 93.3 0.034 1.2E-06 48.0 2.4 23 47-69 9-31 (215)
344 2qtf_A Protein HFLX, GTP-bindi 93.3 0.14 4.8E-06 49.0 6.9 12 220-231 259-270 (364)
345 1c9k_A COBU, adenosylcobinamid 93.3 0.033 1.1E-06 48.4 2.2 19 50-68 2-20 (180)
346 3tqc_A Pantothenate kinase; bi 93.3 0.036 1.2E-06 52.4 2.7 23 49-71 94-116 (321)
347 1gtv_A TMK, thymidylate kinase 93.3 0.021 7.3E-07 49.3 1.0 22 49-70 2-23 (214)
348 2wwf_A Thymidilate kinase, put 93.3 0.035 1.2E-06 47.9 2.3 22 48-69 11-32 (212)
349 3cpj_B GTP-binding protein YPT 93.3 0.033 1.1E-06 48.6 2.2 24 45-68 11-34 (223)
350 4dhe_A Probable GTP-binding pr 93.3 0.022 7.5E-07 49.4 1.0 22 46-67 28-49 (223)
351 2yvu_A Probable adenylyl-sulfa 93.2 0.036 1.2E-06 47.1 2.3 21 48-68 14-34 (186)
352 1rj9_A FTSY, signal recognitio 93.2 0.038 1.3E-06 51.7 2.6 24 48-71 103-126 (304)
353 1s0u_A EIF-2-gamma, translatio 93.2 0.11 3.8E-06 50.2 6.1 69 221-309 81-150 (408)
354 1ukz_A Uridylate kinase; trans 93.2 0.04 1.4E-06 47.3 2.6 24 48-71 16-39 (203)
355 3jvv_A Twitching mobility prot 93.2 0.034 1.2E-06 53.3 2.3 20 49-68 125-144 (356)
356 1oxx_K GLCV, glucose, ABC tran 93.2 0.022 7.7E-07 54.5 1.0 22 49-70 33-54 (353)
357 3a1s_A Iron(II) transport prot 93.1 0.035 1.2E-06 50.4 2.2 23 46-68 4-26 (258)
358 3sr0_A Adenylate kinase; phosp 93.1 0.044 1.5E-06 48.3 2.8 23 49-71 2-24 (206)
359 1n0w_A DNA repair protein RAD5 93.1 0.037 1.3E-06 48.6 2.3 21 49-69 26-46 (243)
360 2qag_C Septin-7; cell cycle, c 93.1 0.036 1.2E-06 54.4 2.3 23 47-69 31-53 (418)
361 3lxw_A GTPase IMAP family memb 93.1 0.038 1.3E-06 49.7 2.4 23 45-67 19-41 (247)
362 3gd7_A Fusion complex of cysti 93.1 0.035 1.2E-06 54.0 2.2 22 49-70 49-70 (390)
363 1vht_A Dephospho-COA kinase; s 93.0 0.041 1.4E-06 48.0 2.4 22 48-69 5-26 (218)
364 1uj2_A Uridine-cytidine kinase 93.0 0.042 1.4E-06 49.4 2.5 24 46-69 21-44 (252)
365 2gza_A Type IV secretion syste 93.0 0.043 1.5E-06 52.5 2.7 24 48-71 176-199 (361)
366 1cr0_A DNA primase/helicase; R 93.0 0.038 1.3E-06 50.7 2.2 23 49-71 37-59 (296)
367 3b1v_A Ferrous iron uptake tra 93.0 0.04 1.4E-06 50.6 2.4 22 47-68 3-24 (272)
368 1m7g_A Adenylylsulfate kinase; 93.0 0.065 2.2E-06 46.6 3.6 23 47-69 25-47 (211)
369 2kjq_A DNAA-related protein; s 92.9 0.041 1.4E-06 45.8 2.2 22 49-70 38-59 (149)
370 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.045 1.6E-06 51.7 2.7 24 48-71 172-195 (330)
371 2xb4_A Adenylate kinase; ATP-b 92.9 0.044 1.5E-06 48.3 2.5 23 49-71 2-24 (223)
372 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.043 1.5E-06 49.7 2.4 22 48-69 5-26 (260)
373 2qag_B Septin-6, protein NEDD5 92.9 0.041 1.4E-06 54.1 2.4 21 48-68 43-63 (427)
374 2vp4_A Deoxynucleoside kinase; 92.8 0.035 1.2E-06 49.2 1.8 23 48-70 21-43 (230)
375 1in4_A RUVB, holliday junction 92.8 0.088 3E-06 49.4 4.6 23 48-70 52-74 (334)
376 2x8a_A Nuclear valosin-contain 92.8 0.043 1.5E-06 50.4 2.3 22 49-70 46-67 (274)
377 1ixz_A ATP-dependent metallopr 92.8 0.044 1.5E-06 49.0 2.3 23 49-71 51-73 (254)
378 2npi_A Protein CLP1; CLP1-PCF1 92.7 0.041 1.4E-06 54.5 2.3 26 46-71 137-162 (460)
379 3be4_A Adenylate kinase; malar 92.7 0.052 1.8E-06 47.5 2.7 24 48-71 6-29 (217)
380 1nlf_A Regulatory protein REPA 92.7 0.044 1.5E-06 50.0 2.2 22 49-70 32-53 (279)
381 1jbk_A CLPB protein; beta barr 92.7 0.06 2E-06 44.6 2.9 21 48-68 44-64 (195)
382 2grj_A Dephospho-COA kinase; T 92.7 0.049 1.7E-06 47.4 2.4 27 45-71 10-36 (192)
383 3b9q_A Chloroplast SRP recepto 92.6 0.053 1.8E-06 50.7 2.7 23 49-71 102-124 (302)
384 3mca_A HBS1, elongation factor 92.5 0.024 8.3E-07 58.0 0.3 40 217-256 251-290 (592)
385 2ewv_A Twitching motility prot 92.5 0.056 1.9E-06 52.0 2.8 23 49-71 138-160 (372)
386 1ltq_A Polynucleotide kinase; 92.5 0.053 1.8E-06 49.7 2.4 21 49-69 4-24 (301)
387 2dy1_A Elongation factor G; tr 92.4 0.18 6.2E-06 52.2 6.6 69 217-307 70-139 (665)
388 3nwj_A ATSK2; P loop, shikimat 92.3 0.055 1.9E-06 49.2 2.3 22 48-69 49-70 (250)
389 1p9r_A General secretion pathw 92.3 0.052 1.8E-06 53.2 2.3 21 49-69 169-189 (418)
390 2p65_A Hypothetical protein PF 92.2 0.066 2.2E-06 44.4 2.5 23 47-69 43-65 (187)
391 3r20_A Cytidylate kinase; stru 92.2 0.06 2.1E-06 48.6 2.4 24 47-70 9-32 (233)
392 3ake_A Cytidylate kinase; CMP 92.1 0.065 2.2E-06 45.9 2.4 23 49-71 4-26 (208)
393 1iy2_A ATP-dependent metallopr 92.1 0.06 2.1E-06 48.9 2.3 23 49-71 75-97 (278)
394 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.07 2.4E-06 44.3 2.4 19 50-68 26-44 (149)
395 2obl_A ESCN; ATPase, hydrolase 92.0 0.06 2E-06 51.4 2.2 24 48-71 72-95 (347)
396 1tq4_A IIGP1, interferon-induc 92.0 0.13 4.5E-06 50.2 4.7 25 46-70 68-92 (413)
397 1nij_A Hypothetical protein YJ 91.9 0.064 2.2E-06 50.2 2.4 23 48-70 5-27 (318)
398 3e70_C DPA, signal recognition 91.9 0.072 2.5E-06 50.4 2.7 24 48-71 130-153 (328)
399 1u0l_A Probable GTPase ENGC; p 91.9 0.064 2.2E-06 49.8 2.3 23 49-71 171-193 (301)
400 2yv5_A YJEQ protein; hydrolase 91.9 0.065 2.2E-06 49.9 2.3 22 49-71 167-188 (302)
401 3i8s_A Ferrous iron transport 91.9 0.065 2.2E-06 49.0 2.3 22 47-68 3-24 (274)
402 1ak2_A Adenylate kinase isoenz 91.8 0.072 2.5E-06 47.1 2.5 25 47-71 16-40 (233)
403 2f6r_A COA synthase, bifunctio 91.8 0.071 2.4E-06 49.0 2.5 22 48-69 76-97 (281)
404 1tf7_A KAIC; homohexamer, hexa 91.7 0.063 2.2E-06 53.8 2.2 19 49-67 41-59 (525)
405 3iby_A Ferrous iron transport 91.7 0.068 2.3E-06 48.5 2.2 21 48-68 2-22 (256)
406 1np6_A Molybdopterin-guanine d 91.7 0.074 2.5E-06 45.7 2.3 21 48-68 7-27 (174)
407 3b60_A Lipid A export ATP-bind 91.7 0.068 2.3E-06 54.3 2.4 24 49-72 371-394 (582)
408 2yhs_A FTSY, cell division pro 91.7 0.076 2.6E-06 53.2 2.7 23 49-71 295-317 (503)
409 3b5x_A Lipid A export ATP-bind 91.7 0.068 2.3E-06 54.3 2.4 24 49-72 371-394 (582)
410 1yqt_A RNAse L inhibitor; ATP- 91.6 0.068 2.3E-06 53.9 2.3 23 49-71 49-71 (538)
411 3r7w_A Gtpase1, GTP-binding pr 91.6 0.074 2.5E-06 49.5 2.3 21 47-67 3-23 (307)
412 3bos_A Putative DNA replicatio 91.5 0.077 2.6E-06 46.0 2.3 23 46-68 51-73 (242)
413 2og2_A Putative signal recogni 91.5 0.085 2.9E-06 50.6 2.7 23 49-71 159-181 (359)
414 3gee_A MNME, tRNA modification 91.4 0.18 6.3E-06 50.1 5.2 24 44-67 230-253 (476)
415 2yl4_A ATP-binding cassette SU 91.4 0.073 2.5E-06 54.2 2.3 23 49-71 372-394 (595)
416 2dpy_A FLII, flagellum-specifi 91.4 0.073 2.5E-06 52.4 2.2 24 48-71 158-181 (438)
417 3ozx_A RNAse L inhibitor; ATP 91.4 0.075 2.6E-06 53.7 2.3 23 49-71 27-49 (538)
418 4dcu_A GTP-binding protein ENG 91.4 0.087 3E-06 51.8 2.7 71 217-309 239-321 (456)
419 1lv7_A FTSH; alpha/beta domain 91.3 0.081 2.8E-06 47.3 2.3 22 48-69 46-67 (257)
420 2www_A Methylmalonic aciduria 91.3 0.081 2.8E-06 50.3 2.4 35 219-256 165-199 (349)
421 2dr3_A UPF0273 protein PH0284; 91.3 0.081 2.8E-06 46.4 2.2 20 49-68 25-44 (247)
422 2aka_B Dynamin-1; fusion prote 91.3 0.26 8.8E-06 44.7 5.7 70 220-310 124-208 (299)
423 3euj_A Chromosome partition pr 91.3 0.1 3.4E-06 52.2 3.1 23 49-71 31-53 (483)
424 3qf4_B Uncharacterized ABC tra 91.3 0.078 2.7E-06 54.1 2.3 24 49-72 383-406 (598)
425 1jwy_B Dynamin A GTPase domain 91.1 0.18 6.2E-06 46.2 4.5 72 219-310 129-214 (315)
426 2hjg_A GTP-binding protein ENG 91.0 0.1 3.4E-06 51.0 2.8 71 217-309 219-301 (436)
427 1a7j_A Phosphoribulokinase; tr 91.0 0.08 2.7E-06 49.0 2.0 23 48-70 6-28 (290)
428 1h65_A Chloroplast outer envel 91.0 0.98 3.3E-05 40.6 9.3 40 217-256 83-131 (270)
429 4eaq_A DTMP kinase, thymidylat 90.9 0.099 3.4E-06 46.6 2.4 25 47-71 26-50 (229)
430 1q3t_A Cytidylate kinase; nucl 90.8 0.1 3.6E-06 46.2 2.5 24 46-69 15-38 (236)
431 3c5h_A Glucocorticoid receptor 90.8 0.096 3.3E-06 47.2 2.3 24 45-68 17-49 (255)
432 3j16_B RLI1P; ribosome recycli 90.8 0.091 3.1E-06 53.9 2.3 23 49-71 105-127 (608)
433 1pzn_A RAD51, DNA repair and r 90.8 0.093 3.2E-06 49.9 2.2 23 49-71 133-155 (349)
434 2qm8_A GTPase/ATPase; G protei 90.8 0.096 3.3E-06 49.6 2.3 23 46-68 54-76 (337)
435 4a82_A Cystic fibrosis transme 90.7 0.074 2.5E-06 54.0 1.5 24 49-72 369-392 (578)
436 2oap_1 GSPE-2, type II secreti 90.7 0.18 6.1E-06 50.6 4.3 23 49-71 262-284 (511)
437 1ewq_A DNA mismatch repair pro 90.7 0.11 3.6E-06 54.9 2.7 22 49-70 578-599 (765)
438 2rcn_A Probable GTPase ENGC; Y 90.7 0.099 3.4E-06 50.2 2.3 22 49-70 217-238 (358)
439 2w58_A DNAI, primosome compone 90.6 0.26 8.8E-06 42.1 4.8 21 48-68 55-75 (202)
440 2bjv_A PSP operon transcriptio 90.6 0.22 7.5E-06 44.6 4.5 25 45-69 27-51 (265)
441 3bk7_A ABC transporter ATP-bin 90.6 0.098 3.4E-06 53.6 2.3 23 49-71 119-141 (607)
442 1mky_A Probable GTP-binding pr 90.6 0.1 3.5E-06 51.0 2.4 22 47-68 180-201 (439)
443 3syl_A Protein CBBX; photosynt 90.5 0.37 1.3E-05 43.8 6.1 20 49-68 69-88 (309)
444 1wb9_A DNA mismatch repair pro 90.5 0.11 3.8E-06 55.0 2.6 22 49-70 609-630 (800)
445 2o8b_B DNA mismatch repair pro 90.5 0.11 3.7E-06 56.5 2.6 22 49-70 791-812 (1022)
446 3pfi_A Holliday junction ATP-d 90.4 0.2 6.8E-06 46.5 4.1 25 46-70 54-78 (338)
447 1qhl_A Protein (cell division 90.3 0.047 1.6E-06 49.0 -0.3 22 50-71 30-51 (227)
448 3zvl_A Bifunctional polynucleo 90.3 0.11 3.8E-06 50.5 2.3 21 48-68 259-279 (416)
449 1xjc_A MOBB protein homolog; s 90.2 0.12 4.2E-06 44.2 2.3 21 48-68 5-25 (169)
450 2chg_A Replication factor C sm 90.1 0.13 4.3E-06 43.6 2.3 20 49-68 40-59 (226)
451 3thx_A DNA mismatch repair pro 90.1 0.12 4.3E-06 55.5 2.6 20 49-68 664-683 (934)
452 1njg_A DNA polymerase III subu 90.0 0.28 9.7E-06 41.8 4.5 20 49-68 47-66 (250)
453 1svm_A Large T antigen; AAA+ f 90.0 0.12 4.2E-06 49.8 2.3 22 49-70 171-192 (377)
454 1t9h_A YLOQ, probable GTPase E 90.0 0.067 2.3E-06 50.2 0.4 21 48-68 174-194 (307)
455 2aka_B Dynamin-1; fusion prote 90.0 0.13 4.3E-06 46.8 2.3 23 46-68 25-47 (299)
456 3qf4_A ABC transporter, ATP-bi 89.9 0.11 3.6E-06 53.0 1.8 24 49-72 371-394 (587)
457 3ozx_A RNAse L inhibitor; ATP 89.7 0.13 4.3E-06 52.0 2.3 23 49-71 296-318 (538)
458 3thx_B DNA mismatch repair pro 89.7 0.11 3.7E-06 55.9 1.8 21 49-69 675-695 (918)
459 3bk7_A ABC transporter ATP-bin 89.7 0.13 4.4E-06 52.8 2.3 22 49-70 384-405 (607)
460 3qks_A DNA double-strand break 89.7 0.16 5.5E-06 44.3 2.6 22 49-70 25-46 (203)
461 3b9p_A CG5977-PA, isoform A; A 89.5 0.15 5E-06 46.5 2.4 23 47-69 54-76 (297)
462 2px0_A Flagellar biosynthesis 89.4 0.16 5.5E-06 47.2 2.6 23 49-71 107-129 (296)
463 1wf3_A GTP-binding protein; GT 89.4 0.15 5.1E-06 47.4 2.3 23 46-68 6-28 (301)
464 1hqc_A RUVB; extended AAA-ATPa 89.4 0.28 9.5E-06 45.0 4.2 22 47-68 38-59 (324)
465 3qf7_A RAD50; ABC-ATPase, ATPa 89.4 0.14 4.9E-06 48.8 2.3 20 50-69 26-45 (365)
466 1bif_A 6-phosphofructo-2-kinas 89.4 0.15 5.2E-06 50.2 2.5 24 45-68 37-60 (469)
467 3h4m_A Proteasome-activating n 89.4 0.15 5.3E-06 45.9 2.4 21 48-68 52-72 (285)
468 1yqt_A RNAse L inhibitor; ATP- 89.3 0.14 4.9E-06 51.6 2.3 23 49-71 314-336 (538)
469 3szr_A Interferon-induced GTP- 89.1 0.13 4.4E-06 52.7 1.8 24 48-71 46-69 (608)
470 3lda_A DNA repair protein RAD5 89.1 0.15 5.1E-06 49.6 2.2 20 49-68 180-199 (400)
471 3p32_A Probable GTPase RV1496/ 89.1 0.23 7.8E-06 47.1 3.4 37 218-257 169-205 (355)
472 3cf0_A Transitional endoplasmi 89.0 0.17 5.8E-06 46.7 2.4 23 49-71 51-73 (301)
473 3j16_B RLI1P; ribosome recycli 89.0 0.16 5.3E-06 52.2 2.3 22 50-71 381-402 (608)
474 2qz4_A Paraplegin; AAA+, SPG7, 89.0 0.17 5.8E-06 44.8 2.3 22 48-69 40-61 (262)
475 1vma_A Cell division protein F 88.8 0.2 6.8E-06 46.9 2.7 23 49-71 106-128 (306)
476 3cr8_A Sulfate adenylyltranfer 88.7 0.13 4.3E-06 52.3 1.4 23 48-70 370-392 (552)
477 1sxj_E Activator 1 40 kDa subu 88.7 0.16 5.4E-06 47.4 2.0 23 49-71 38-61 (354)
478 1d2n_A N-ethylmaleimide-sensit 88.6 0.37 1.3E-05 43.3 4.3 23 47-69 64-86 (272)
479 4aby_A DNA repair protein RECN 88.5 0.1 3.4E-06 50.2 0.5 24 49-72 62-85 (415)
480 3d3q_A TRNA delta(2)-isopenten 88.5 0.18 6.3E-06 48.0 2.3 21 49-69 9-29 (340)
481 1p5z_B DCK, deoxycytidine kina 88.5 0.16 5.3E-06 45.8 1.7 25 46-70 23-47 (263)
482 1l8q_A Chromosomal replication 88.4 0.19 6.6E-06 46.5 2.4 22 48-69 38-59 (324)
483 1ni3_A YCHF GTPase, YCHF GTP-b 88.4 0.18 6.3E-06 48.9 2.3 24 46-69 19-42 (392)
484 2j69_A Bacterial dynamin-like 88.4 0.38 1.3E-05 50.0 4.8 67 221-308 174-244 (695)
485 2dby_A GTP-binding protein; GD 88.4 0.2 6.7E-06 48.2 2.5 21 48-68 2-22 (368)
486 1ojl_A Transcriptional regulat 88.4 0.36 1.2E-05 44.7 4.2 28 42-69 20-47 (304)
487 3t34_A Dynamin-related protein 88.3 0.19 6.5E-06 47.6 2.3 71 220-310 135-219 (360)
488 3ux8_A Excinuclease ABC, A sub 88.2 0.15 5E-06 52.7 1.5 19 49-67 350-368 (670)
489 3r7w_B Gtpase2, GTP-binding pr 88.2 0.2 7E-06 47.5 2.4 19 49-67 1-19 (331)
490 2h92_A Cytidylate kinase; ross 88.2 0.22 7.5E-06 43.1 2.4 24 48-71 4-27 (219)
491 2iw3_A Elongation factor 3A; a 88.1 0.19 6.4E-06 54.4 2.3 20 49-68 463-482 (986)
492 2qmh_A HPR kinase/phosphorylas 88.0 0.22 7.7E-06 44.0 2.4 21 48-68 35-55 (205)
493 3vqt_A RF-3, peptide chain rel 87.9 0.66 2.3E-05 46.8 6.1 69 217-307 96-165 (548)
494 4fcw_A Chaperone protein CLPB; 87.9 0.22 7.5E-06 45.4 2.4 21 49-69 49-69 (311)
495 3tqf_A HPR(Ser) kinase; transf 87.8 0.23 7.9E-06 43.0 2.3 20 48-67 17-36 (181)
496 2qpt_A EH domain-containing pr 87.8 0.41 1.4E-05 48.4 4.4 67 222-309 155-233 (550)
497 3crm_A TRNA delta(2)-isopenten 87.7 0.22 7.5E-06 47.1 2.3 20 49-68 7-26 (323)
498 3t34_A Dynamin-related protein 87.7 0.54 1.8E-05 44.4 5.0 23 46-68 33-55 (360)
499 1xzp_A Probable tRNA modificat 87.5 0.34 1.2E-05 48.2 3.7 24 45-68 241-264 (482)
500 1jwy_B Dynamin A GTPase domain 87.5 0.24 8.2E-06 45.4 2.4 23 46-68 23-45 (315)
No 1
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=1.3e-70 Score=534.39 Aligned_cols=294 Identities=37% Similarity=0.595 Sum_probs=246.7
Q ss_pred hhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 019426 21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD 100 (341)
Q Consensus 21 ~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~ 100 (341)
.++++++++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+++|+..|+++|+.|++++|+.|++
T Consensus 6 ~~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~ 85 (353)
T 1cip_A 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIR 85 (353)
T ss_dssp -------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhh
Q 019426 101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180 (341)
Q Consensus 101 a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l 180 (341)
+|+.++++.. +++++..++.+..+....+...+++++++.|..||+||+||+||.++++|+|+|++.|||+++
T Consensus 86 ~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~ 158 (353)
T 1cip_A 86 AMGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDL 158 (353)
T ss_dssp HHHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTH
T ss_pred HHHHhCCCCC-------CcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHH
Confidence 9999887532 455666666666553222124688999999999999999999999999999999999999999
Q ss_pred hhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccc
Q 019426 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260 (341)
Q Consensus 181 ~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~ 260 (341)
+||+.++|.||.+|++++|.||+|+.+..| .++++++++||+|||+++|++|.+||+++++||||+|+|+|||+
T Consensus 159 ~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~------~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~ 232 (353)
T 1cip_A 159 DRIAQPNYIPTQQDVLRTRVKTTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 232 (353)
T ss_dssp HHHTSTTCCCCHHHHHTCCCCCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCE
T ss_pred HHHhcCCCCCCccccccccCceeceEEEEE------eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccccc
Confidence 999999999999999999999999999999 77889999999999999999999999999999999999999999
Q ss_pred cccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhh
Q 019426 261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVS 338 (341)
Q Consensus 261 l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 338 (341)
+.||+..|||++++.+|+.+++++++.+ .||+||+| +|++ ..++ ..+++++|||+|+| ++.+++.
T Consensus 233 l~ed~~~nr~~e~~~~~~~i~~~~~~~~-------~piiLv~NK~DL~-----~~ki-~~~~l~~~fp~~~g~~~~~e~~ 299 (353)
T 1cip_A 233 LAEDEEMNRMHESMKLFDSICNNKWFTD-------TSIILFLNKKDLF-----EEKI-KKSPLTICYPEYAGSNTYEEAA 299 (353)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHTCGGGTT-------SEEEEEEECHHHH-----HHHH-TTSCGGGTCTTCCSCSCHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHcCccccC-------CcEEEEEECcCch-----hhhc-cccchhhcccccCCCCCHHHHH
Confidence 9999999999999999999999999988 89999999 9999 6666 45899999999999 8888776
Q ss_pred hc
Q 019426 339 KQ 340 (341)
Q Consensus 339 ~~ 340 (341)
+|
T Consensus 300 ~~ 301 (353)
T 1cip_A 300 AY 301 (353)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 2
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=8e-70 Score=530.48 Aligned_cols=299 Identities=31% Similarity=0.568 Sum_probs=238.8
Q ss_pred ccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 019426 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (341)
Q Consensus 9 mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~ 88 (341)
|||++| .++++++++|++||++|++++++.++.+||||||+||||||||+|||+++|.+||+++|+..|+++|+
T Consensus 1 mgc~~~------~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~ 74 (362)
T 1zcb_A 1 MGCTLS------AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY 74 (362)
T ss_dssp ------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred CCCCCC------HHHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
Confidence 886443 25678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCC--------CCCCCcHHHHHHHHHhcCChHHHHH
Q 019426 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRL--------DYPRLTKELAEDIETLWADPAIQET 160 (341)
Q Consensus 89 ~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~e~~~~I~~LW~d~~vq~~ 160 (341)
.|++++|+.|+++|+.++++. .+++++..+..+..+.... +...+ +++++.|..||+||+||+|
T Consensus 75 ~n~~~s~~~il~a~~~~~i~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~ 146 (362)
T 1zcb_A 75 SNVIKGMRVLVDAREKLHIPW-------GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNA 146 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-------SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------CCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHH
Confidence 999999999999999988653 2456666666666554321 11245 8999999999999999999
Q ss_pred HHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCcccccccccc
Q 019426 161 YAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240 (341)
Q Consensus 161 ~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~ 240 (341)
|+++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..| .++++++++||+|||+++|++|.+
T Consensus 147 ~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~------~~~~~~l~i~Dt~Gq~~~r~~w~~ 220 (362)
T 1zcb_A 147 YDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFE 220 (362)
T ss_dssp HHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEE------EETTEEEEEEEECC-------CTT
T ss_pred HHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEe------eeCCeEEEEEeccchhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999 778899999999999999999999
Q ss_pred ccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccc
Q 019426 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFF 319 (341)
Q Consensus 241 ~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~ 319 (341)
||+++++||||+|+|+|||+|.||+..|||++++.+|+.+++++++.+ .|||||+| +|++ ..++ .+
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~-------~piILv~NK~DL~-----~~ki-~~ 287 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN-------VSIILFLNKTDLL-----EEKV-QV 287 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT-------SEEEEEEECHHHH-----HHHT-TT
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC-------CCEEEEEEChhhh-----hhhc-cc
Confidence 999999999999999999999999999999999999999999999988 89999999 9999 6676 47
Q ss_pred cceeeecccccc--chhhhhhhc
Q 019426 320 LKKKIFWYSFAE--NFLHAVSKQ 340 (341)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~~~~~ 340 (341)
+++++|||+|+| ++.+++.+|
T Consensus 288 ~~l~~~fp~y~g~~~~~~e~~~~ 310 (362)
T 1zcb_A 288 VSIKDYFLEFEGDPHCLRDVQKF 310 (362)
T ss_dssp CCGGGTCTTCCSCTTCHHHHHHH
T ss_pred cchhhcCccccCCCCCHHHHHHH
Confidence 899999999998 677777654
No 3
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=2.3e-69 Score=532.62 Aligned_cols=299 Identities=30% Similarity=0.523 Sum_probs=235.8
Q ss_pred ccccccCCCC-CChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHH---------
Q 019426 9 MGLLCSKNRR-YNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA--------- 78 (341)
Q Consensus 9 mg~~~~~~~~-~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~--------- 78 (341)
||||+|.... ...++++++++|++||++|++++++.++++|+||||+||||||||+||||++|.+||+.+
T Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~ 80 (402)
T 1azs_C 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA 80 (402)
T ss_dssp -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence 8987765321 124567899999999999999999999999999999999999999999999999999976
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhc
Q 019426 79 ------ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152 (341)
Q Consensus 79 ------e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW 152 (341)
|+..|+++|+.|++++|+.|+++|..+.+.. ...+++++..++.+..+.... ...+++++++.|..||
T Consensus 81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lW 154 (402)
T 1azs_C 81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV-----ELANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALW 154 (402)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC-----CCSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccCCchhHHHHHHHHhhcccC-CCCCCHHHHHHHHHHH
Confidence 5667999999999999999999999886321 123566776777776654322 2468999999999999
Q ss_pred CChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCcc
Q 019426 153 ADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR 232 (341)
Q Consensus 153 ~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr 232 (341)
+||+||+||.++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..| .++++++++||+|||+
T Consensus 155 ~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~------~~~~v~l~iwDtaGQe 228 (402)
T 1azs_C 155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQR 228 (402)
T ss_dssp HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEE------EETTEEEEEEEECCSG
T ss_pred cCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEe------ecCCccceecccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999 7788999999999999
Q ss_pred ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccc
Q 019426 233 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMH 311 (341)
Q Consensus 233 ~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~ 311 (341)
.+|++|.+||+++++||||+|+++|||++.||+..|||++++.+|+.+++++++.+ .||+||+| +|++
T Consensus 229 ~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~-------~piiLvgNK~DL~---- 297 (402)
T 1azs_C 229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT-------ISVILFLNKQDLL---- 297 (402)
T ss_dssp GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS-------CCEEEEEECHHHH----
T ss_pred hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC-------CeEEEEEEChhhh----
Confidence 99999999999999999999999999999999999999999999999999998887 89999999 9998
Q ss_pred cccccccc-cceeeecccccc
Q 019426 312 WQTVGNFF-LKKKIFWYSFAE 331 (341)
Q Consensus 312 ~~~~~~~~-~~~~~~~~~~~~ 331 (341)
..++..+ +++++|||+|+|
T Consensus 298 -~~ki~~~~~~l~~~fp~y~~ 317 (402)
T 1azs_C 298 -AEKVLAGKSKIEDYFPEFAR 317 (402)
T ss_dssp -HHHHHHCSSCGGGTCGGGGT
T ss_pred -hhhhcccccchhhccccccc
Confidence 5555433 489999999984
No 4
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=1.6e-68 Score=514.16 Aligned_cols=272 Identities=33% Similarity=0.609 Sum_probs=251.4
Q ss_pred HhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchH
Q 019426 43 AEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENK 122 (341)
Q Consensus 43 ~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~ 122 (341)
+.++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.++++. .+++++
T Consensus 3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~-------~~~~~~ 75 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY-------KYEHNK 75 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-------SSTHHH
T ss_pred hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC-------CCchhH
Confidence 4567899999999999999999999999999999999999999999999999999999999998763 356777
Q ss_pred HHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccc
Q 019426 123 EIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRT 202 (341)
Q Consensus 123 ~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T 202 (341)
..++.+.++.... ...+++++++.|..||+||+||+||+++++|+|+|++.|||++++||++++|.||++|+||+|.||
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T 154 (327)
T 3ohm_A 76 AHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 154 (327)
T ss_dssp HHHHHHHTCCGGG-CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCC
T ss_pred HHHHHHhcccccc-cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCce
Confidence 8888887654432 246889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc
Q 019426 203 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282 (341)
Q Consensus 203 ~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n 282 (341)
+|+.+..| .++++++++||+|||+++|++|.+||++++++|||+|+|+|||++.|+...|||++++.+|+++++
T Consensus 155 iGi~~~~~------~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 155 TGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred eeEEEEEE------EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 99999999 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhcC
Q 019426 283 QPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQI 341 (341)
Q Consensus 283 ~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 341 (341)
++++.+ .||+||+| +|++ ..|++ ..++++|||+|+| ++.+++.+||
T Consensus 229 ~~~~~~-------~~iiL~~NK~DL~-----~~ki~-~~~l~~~fp~y~g~~~~~e~a~~fi 277 (327)
T 3ohm_A 229 YPWFQN-------SSVILFLNKKDLL-----EEKIM-YSHLVDYFPEYDGPQRDAQAAREFI 277 (327)
T ss_dssp SGGGTT-------CEEEEEEECHHHH-----HHHTT-TSCGGGTCTTCCSCSSCHHHHHHHH
T ss_pred hhccCC-------ceEEEEEECchhh-----hhhhc-cchHhhhchhccCCCCCHHHHHHHH
Confidence 999988 89999999 9999 66774 5789999999999 7999887763
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=1.6e-66 Score=502.23 Aligned_cols=266 Identities=32% Similarity=0.523 Sum_probs=241.7
Q ss_pred hcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~ 124 (341)
++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.++++.. +++++..
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~-------~~~~~~~ 75 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK-------YQPKSKE 75 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------CCCCSGG
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC-------ChhhHHH
Confidence 467999999999999999999999999999999999999999999999999999999999987643 2333322
Q ss_pred HHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccC
Q 019426 125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTG 204 (341)
Q Consensus 125 ~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~G 204 (341)
+ .+.. ...+.+++++++.|..||+||+||+||+++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|
T Consensus 76 ~---~~~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiG 150 (340)
T 4fid_A 76 F---TTED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTG 150 (340)
T ss_dssp G---SCCS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCS
T ss_pred H---hhcc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceee
Confidence 2 1222 2235688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426 205 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (341)
Q Consensus 205 i~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~ 284 (341)
+.+..| .++++++++||+|||+++|++|.+||+++++||||+|+|+|||++.||...|||++++.+|+.+++++
T Consensus 151 i~~~~~------~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 151 IHEYDF------VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CEEEEE------ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred eEEEEE------EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 999999 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhhhcC
Q 019426 285 CFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVSKQI 341 (341)
Q Consensus 285 ~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 341 (341)
++.+ .||+||+| +|++ ..|+ ..+++++|||+|+| ++++++.+||
T Consensus 225 ~~~~-------~piiLv~NK~DL~-----~eki-~~~~l~~~fp~y~g~~~~e~a~~~i 270 (340)
T 4fid_A 225 FLKG-------AVKLIFLNKMDLF-----EEKL-TKVPLNTIFPEYTGGDNAVMGAQYI 270 (340)
T ss_dssp GGTT-------SEEEEEEECHHHH-----HHHH-HHSCGGGTCTTCCCTTCHHHHHHHH
T ss_pred ccCC-------CeEEEEEECchhh-----hhhc-CcchHHHhhhhhcCCCCHHHHHHHH
Confidence 9988 89999999 9999 6666 57899999999999 8899987764
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-61 Score=468.52 Aligned_cols=282 Identities=75% Similarity=1.155 Sum_probs=242.5
Q ss_pred cccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIG 125 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~ 125 (341)
+++|+||||+|||||||++|||+++|.+||+++|+..|+++|+.|++++|+.|+++|+.+.+...+...+.++++++..+
T Consensus 8 ~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~~ 87 (354)
T 2xtz_A 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIG 87 (354)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHHH
T ss_pred CceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999886544333444566776666
Q ss_pred HHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCe
Q 019426 126 EKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGV 205 (341)
Q Consensus 126 ~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi 205 (341)
..+..+....+.+.+++++++.|..||+||+||+||.|+++++|+|++.|||++++||+.++|.||.+|++++|.+|+||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi 167 (354)
T 2xtz_A 88 EKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGV 167 (354)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSE
T ss_pred HHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccccce
Confidence 66655433333457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 206 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 206 ~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
.|+.|...+.+..+.+++++||+|||+.+|++|.+||++++++|||+|+++|||+|.|+...|||++++.+|+.++++++
T Consensus 168 ~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~ 247 (354)
T 2xtz_A 168 VEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247 (354)
T ss_dssp EEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred eeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc
Confidence 99999321100014689999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCccccCCceeEEEEec-cCccCccccccccccccceeee--ccccc----c-chhhhhhhc
Q 019426 286 FEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIF--WYSFA----E-NFLHAVSKQ 340 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~--~~~~~----~-~~~~~~~~~ 340 (341)
+.+ .||+|++| +|++ ..++ ..++++.+ ||+|. | ++.+++.+|
T Consensus 248 ~~~-------~piiLvgNK~DL~-----~~k~-~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~ 297 (354)
T 2xtz_A 248 FEK-------TSFMLFLNKFDIF-----EKKV-LDVPLNVCEWFRDYQPVSSGKQEIEHAYEF 297 (354)
T ss_dssp GSS-------CEEEEEEECHHHH-----HHHT-TTSCGGGSGGGTTCCCCSSHHHHHHHHHHH
T ss_pred cCC-------CeEEEEEECcchh-----hhhc-ccccccccccccccccccCCCcCHHHHHHH
Confidence 887 89999999 9998 5555 33666555 99996 5 677776554
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.19 E-value=2.4e-10 Score=96.30 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=68.5
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ .+.+..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....+..++
T Consensus 38 t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~ 101 (171)
T 1upt_A 38 TIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAML 101 (171)
T ss_dssp CSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHH
T ss_pred cCccceEEE------EECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 344544445 4557889999999999999999999999999999999997 356778888888888
Q ss_pred cCccccCccccCCceeEEEEec-cCccCc
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
......+ .|+++.+| +|+...
T Consensus 102 ~~~~~~~-------~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 102 EEEELRK-------AILVVFANKQDMEQA 123 (171)
T ss_dssp TCGGGTT-------CEEEEEEECTTSTTC
T ss_pred hchhhCC-------CEEEEEEECCCCcCC
Confidence 8765555 78998888 999854
No 8
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.16 E-value=2.2e-10 Score=99.15 Aligned_cols=86 Identities=29% Similarity=0.447 Sum_probs=68.4
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
+|.|+....+ .+++..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..+
T Consensus 53 ~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~ 116 (190)
T 2h57_A 53 PTIGFSIEKF------KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTL 116 (190)
T ss_dssp CCSSEEEEEE------ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHH
T ss_pred CccceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4455555566 5667899999999999999999999999999999999987 35577777777888
Q ss_pred hcCccc--cCccccCCceeEEEEec-cCccCc
Q 019426 281 LKQPCF--EVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 281 ~n~~~f--~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+....+ .+ .|++|++| +|+...
T Consensus 117 ~~~~~~~~~~-------~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 117 LNHPDIKHRR-------IPILFFANKMDLRDA 141 (190)
T ss_dssp HHSTTTTTSC-------CCEEEEEECTTSTTC
T ss_pred HhChhhccCC-------CeEEEEEeCcCcccC
Confidence 776544 34 78888888 999854
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.15 E-value=2.1e-10 Score=99.13 Aligned_cols=76 Identities=21% Similarity=0.433 Sum_probs=63.3
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....+..++......+ .
T Consensus 56 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 118 (181)
T 1fzq_A 56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEKLSC-------V 118 (181)
T ss_dssp EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGGGTT-------C
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhhcC-------C
Confidence 4457789999999999999999999999999999999987 3567777778888877654444 7
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|+++.+| +|+...
T Consensus 119 piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 119 PVLIFANKQDLLTA 132 (181)
T ss_dssp CEEEEEECTTSTTC
T ss_pred CEEEEEECcCcccC
Confidence 8999998 999854
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.14 E-value=5.5e-10 Score=97.27 Aligned_cols=75 Identities=17% Similarity=0.343 Sum_probs=63.1
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|.+++.+++++|||+|+++ ..++.+....+..++......+ .
T Consensus 63 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 125 (190)
T 1m2o_B 63 AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAELKD-------V 125 (190)
T ss_dssp EETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchhhcC-------C
Confidence 4556889999999999999999999999999999999997 3567888888888887654444 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++.+| +|+..
T Consensus 126 piilv~NK~Dl~~ 138 (190)
T 1m2o_B 126 PFVILGNKIDAPN 138 (190)
T ss_dssp CEEEEEECTTSTT
T ss_pred CEEEEEECCCCcC
Confidence 8999998 99974
No 11
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.14 E-value=2.8e-10 Score=98.24 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=63.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....+..++......+ .
T Consensus 62 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 124 (189)
T 2x77_A 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDELRK-------S 124 (189)
T ss_dssp EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCSTTTT-------C
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhhcCC-------C
Confidence 4456789999999999999999999999999999999997 3567888888888887655555 7
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|+++.+| +|+...
T Consensus 125 piilv~nK~Dl~~~ 138 (189)
T 2x77_A 125 LLLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEECTTSTTC
T ss_pred eEEEEEECCCCcCC
Confidence 8998888 999743
No 12
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.12 E-value=5.9e-10 Score=95.84 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=68.4
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ .+++..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....+..++
T Consensus 49 t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~ 112 (186)
T 1ksh_A 49 TLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLL 112 (186)
T ss_dssp CSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHH
T ss_pred cCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 335454455 4567889999999999899999999999999999999987 356788888888888
Q ss_pred cCccccCccccCCceeEEEEec-cCccCc
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
......+ .|+++.+| +|+...
T Consensus 113 ~~~~~~~-------~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 113 VEERLAG-------ATLLIFANKQDLPGA 134 (186)
T ss_dssp TCGGGTT-------CEEEEEEECTTSTTC
T ss_pred hChhcCC-------CcEEEEEeCccCCCC
Confidence 8755455 78998888 999754
No 13
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.11 E-value=3e-10 Score=99.76 Aligned_cols=74 Identities=20% Similarity=0.471 Sum_probs=58.7
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
+++..+.+||++||...|..|..++.+++++|||+|+++ ..++.+....+..+.......+ .|
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p 128 (198)
T 1f6b_A 66 IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETIAN-------VP 128 (198)
T ss_dssp ETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------SC
T ss_pred ECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCC-------Cc
Confidence 445788999999999999999999999999999999987 3568888888888887654445 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++++| +|+..
T Consensus 129 iilv~NK~Dl~~ 140 (198)
T 1f6b_A 129 ILILGNKIDRPE 140 (198)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 999998 99974
No 14
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=2.3e-10 Score=97.88 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=59.4
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....+..++......+ .
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 120 (183)
T 1moz_A 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEELQD-------A 120 (183)
T ss_dssp EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSSTTSS-------C
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChhhCC-------C
Confidence 4556889999999999899999999999999999999987 3567788888888887654444 7
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|+++.+| +|+...
T Consensus 121 piilv~nK~Dl~~~ 134 (183)
T 1moz_A 121 ALLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEECTTSTTC
T ss_pred eEEEEEECCCCCCC
Confidence 8999998 998743
No 15
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.10 E-value=6.1e-10 Score=95.72 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=62.6
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..++......+ .
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 123 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRK-------A 123 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCGGGTT-------C
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhCC-------C
Confidence 3456789999999999999999999999999999999997 3567788888888887654445 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|++|.+| +|+..
T Consensus 124 piilv~NK~Dl~~ 136 (181)
T 2h17_A 124 GLLIFANKQDVKE 136 (181)
T ss_dssp EEEEEEECTTSTT
T ss_pred eEEEEEECCCccc
Confidence 8888888 99974
No 16
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.03 E-value=1.6e-09 Score=93.85 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=63.0
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++|+...+..|..++.+++++|||+|+++ ...+......+..++......+ .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 125 (188)
T 1zd9_A 63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQLQG-------I 125 (188)
T ss_dssp EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCC-------C
Confidence 4557789999999999889999999999999999999987 3567777888888887654445 7
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|++|++| +|+...
T Consensus 126 piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 126 PVLVLGNKRDLPGA 139 (188)
T ss_dssp CEEEEEECTTSTTC
T ss_pred CEEEEEECCCCccC
Confidence 8898888 999743
No 17
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.7e-09 Score=91.86 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=54.0
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.......+ .|+
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~p~ 124 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR----------DTFVKLDNWLNELETYCTRND-------IVN 124 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHTTCCSCSC-------CEE
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCC-------CcE
Confidence 346789999999999999999999999999999999872 334444445555554322223 788
Q ss_pred EEEec-cCcc
Q 019426 299 TAFVA-CEHV 307 (341)
Q Consensus 299 ilf~n-~d~~ 307 (341)
+|.+| +|+.
T Consensus 125 ilv~nK~Dl~ 134 (195)
T 1x3s_A 125 MLVGNKIDKE 134 (195)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCcCc
Confidence 88888 9985
No 18
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.96 E-value=1.6e-09 Score=90.71 Aligned_cols=73 Identities=10% Similarity=0.118 Sum_probs=53.7
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....++.+.......+ .|+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pi 111 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ----------STFNDLQDLREQILRVKDTED-------VPM 111 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSC-------CCE
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCcCC-------CcE
Confidence 346789999999998889999999999999999999872 334444444444444222223 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++.+| +|+..
T Consensus 112 ilv~nK~Dl~~ 122 (167)
T 1c1y_A 112 ILVGNKCDLED 122 (167)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECccccc
Confidence 88888 99974
No 19
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.92 E-value=3e-09 Score=89.04 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=51.2
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... .+ .|++
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~-------~pii 113 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAEV--GD-------IPTA 113 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHH--CS-------CCEE
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CC-------CCEE
Confidence 35789999999998889999999999999999999872 22333333334443321 23 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 114 lv~nK~Dl~~ 123 (168)
T 1z2a_A 114 LVQNKIDLLD 123 (168)
T ss_dssp EEEECGGGGG
T ss_pred EEEECcccCc
Confidence 8888 99874
No 20
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.91 E-value=6.7e-09 Score=90.79 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=55.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|+|+|+++ ...+......+..+.......+ .|+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pi 132 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTR-------VPV 132 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----C-------CCE
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence 35678999999999999999999999999999999997 3456666666666666433333 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 133 ilv~nK~Dl~~ 143 (201)
T 3oes_A 133 VLVGNKADLSP 143 (201)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECccCcc
Confidence 88888 99873
No 21
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.88 E-value=3.8e-09 Score=90.03 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=54.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+.......+ .|++|
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil 128 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFLL 128 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTT-------CCEEE
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5789999999998899999999999999999999973 445555555555554322223 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 129 v~nK~Dl~~ 137 (187)
T 2a9k_A 129 VGNKSDLED 137 (187)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 888 99874
No 22
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.88 E-value=4.2e-09 Score=87.85 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=51.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+.......+ .|++
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii 113 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFL 113 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTT-------SCEE
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence 35789999999998899999999999999999999973 345555555555544322223 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 114 lv~nK~Dl~~ 123 (168)
T 1u8z_A 114 LVGNKSDLED 123 (168)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 8888 99974
No 23
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.87 E-value=1.1e-08 Score=86.75 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=41.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh---cCccccCccccCCce
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEVFFCATSAL 296 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~---n~~~f~~~~~~~~~~ 296 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+. +.....+ .
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~-------~ 119 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVNSPET-------F 119 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCTTT-------C
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHHHhcccCcCC-------C
Confidence 35789999999998999999999999999999999873 22333333333333 2222223 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 120 p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 120 PFVILGNKIDAE 131 (182)
T ss_dssp CEEEEEECTTSC
T ss_pred cEEEEEECCccc
Confidence 8888888 9986
No 24
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.86 E-value=6.5e-09 Score=86.59 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=54.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++++|+|+++- ..+++....+..+.......+ .|++
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii 112 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ----------QSFQDIKPMRDQIIRVKRYEK-------VPVI 112 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 35689999999998889999999999999999999972 345555555555554322223 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 113 lv~nK~Dl~~ 122 (167)
T 1kao_A 113 LVGNKVDLES 122 (167)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCcccc
Confidence 8888 99874
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.86 E-value=6.8e-09 Score=88.79 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=50.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+..... .+ .|++|
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil 120 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNALTNWLTDARMLAS-QN-------IVIIL 120 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEEE
Confidence 5789999999999999999999999999999999872 223333333333322111 12 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 121 v~nK~Dl~~ 129 (186)
T 2bme_A 121 CGNKKDLDA 129 (186)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 888 99973
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.86 E-value=1e-08 Score=85.74 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=53.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... -.+ .|++
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii 112 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP----------QSFIKARHWVKELHEQA-SKD-------IIIA 112 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEE
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence 45789999999998899999999999999999999872 33444444444444321 122 7888
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
+++| +|+...
T Consensus 113 lv~nK~Dl~~~ 123 (170)
T 1ek0_A 113 LVGNKIDXLQE 123 (170)
T ss_dssp EEEECGGGGGS
T ss_pred EEEECCCcccc
Confidence 8888 999843
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.86 E-value=1.3e-08 Score=86.57 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=53.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+..... .+ .|++
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~p~i 121 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ----------ASFERAKKWVQELQAQGN-PN-------MVMA 121 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHSC-TT-------CEEE
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEE
Confidence 45789999999999999999999999999999999862 334455555555544211 12 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 122 ~v~nK~Dl~~ 131 (181)
T 2efe_B 122 LAGNKSDLLD 131 (181)
T ss_dssp EEEECTTCTT
T ss_pred EEEECCcccc
Confidence 8888 99974
No 28
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=98.61 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=44.0
Q ss_pred ecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH---HHHhcCcc-ccCccccCCceeEEEEe
Q 019426 227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPC-FEVFFCATSALHITAFV 302 (341)
Q Consensus 227 DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF---~~i~n~~~-f~~~~~~~~~~~iilf~ 302 (341)
|+|||.+.|..|.|||+++++||||||++| ..|++ +++.+ ..+++.+. +++ +|++||+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~g-------apLLVlA 169 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSG-------RPLLVLS 169 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSC-------SCEEEEE
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCC-------CeEEEEe
Confidence 689999999999999999999999999997 34554 88887 55677654 566 8999999
Q ss_pred cc--CccC
Q 019426 303 AC--EHVS 308 (341)
Q Consensus 303 n~--d~~~ 308 (341)
|+ |...
T Consensus 170 NKqqDlp~ 177 (227)
T 3l82_B 170 CISQGDVK 177 (227)
T ss_dssp EESSTTSC
T ss_pred CCCcCccC
Confidence 83 5653
No 29
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.84 E-value=5.8e-09 Score=90.72 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=53.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+.......+ .|++|
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil 124 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFLL 124 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSC-------CCEEE
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5789999999998899999999999999999999973 345555555555544322223 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 125 v~nK~Dl~~ 133 (206)
T 2bov_A 125 VGNKSDLED 133 (206)
T ss_dssp EEECTTCGG
T ss_pred EEeccCccc
Confidence 888 99974
No 30
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.83 E-value=4.2e-09 Score=92.27 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=51.0
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+..... .+ .|++|
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil 135 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNSLAAWLTDARTLAS-PN-------IVVIL 135 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHTC-TT-------CEEEE
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEEE
Confidence 5789999999988889999999999999999999973 233333333344332111 22 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 136 v~nK~Dl~~ 144 (200)
T 2o52_A 136 CGNKKDLDP 144 (200)
T ss_dssp EEECGGGGG
T ss_pred EEECCCccc
Confidence 888 99873
No 31
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.82 E-value=9.8e-09 Score=90.34 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred CceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
+..+.+||++|+...+. .|..++.+++++|||+|++++. ..+.+....+..++....... .-.|+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~-----~~~pi 118 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLIDSMALK-----NSPSL 118 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHTST-----TCCEE
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC---------HHHHHHHHHHHHHHhhhhhcc-----cCCCE
Confidence 57899999999988777 7888999999999999998641 235556666666554322111 12688
Q ss_pred EEEec-cCccCc
Q 019426 299 TAFVA-CEHVSG 309 (341)
Q Consensus 299 ilf~n-~d~~~~ 309 (341)
+|++| +|+...
T Consensus 119 ilv~nK~Dl~~~ 130 (214)
T 2fh5_B 119 LIACNKQDIAMA 130 (214)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCCCc
Confidence 99898 999854
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.82 E-value=1e-08 Score=87.65 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=50.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++ ...+.+....+..+.......+ .|+++
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i~ 114 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSED-------VPMVL 114 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSC-------CCEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence 457889999999999999999999999999999997 2344454555555544222223 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 115 v~nK~Dl~~ 123 (189)
T 4dsu_A 115 VGNKCDLPS 123 (189)
T ss_dssp EEECTTSSS
T ss_pred EEECccCcc
Confidence 888 99973
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.81 E-value=2.3e-08 Score=83.71 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+... ...+ .|++
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~-------~~ii 115 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE----------ETFSTLKNWVRELRQH-GPPS-------IVVA 115 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCTT-------SEEE
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCC-------CcEE
Confidence 46789999999998899999999999999999999872 2333333333444321 1112 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 116 lv~nK~Dl~~ 125 (170)
T 1z0j_A 116 IAGNKCDLTD 125 (170)
T ss_dssp EEEECTTCGG
T ss_pred EEEECCcccc
Confidence 8888 99974
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.81 E-value=1.8e-08 Score=84.31 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... ..+ .|+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~~i 114 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE----------ESFARAKNWVKELQRQA-SPN-------IVI 114 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEE
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcE
Confidence 356789999999999999999999999999999999872 33444444445554321 122 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++++| +|+..
T Consensus 115 ilv~nK~Dl~~ 125 (170)
T 1r2q_A 115 ALSGNKADLAN 125 (170)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECccCcc
Confidence 88888 99873
No 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.81 E-value=2.4e-08 Score=85.11 Aligned_cols=70 Identities=11% Similarity=-0.013 Sum_probs=51.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++- ..++.....+..+.....-.+ .|++|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~il 116 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI----------KSFEVIKVIHGKLLDMVGKVQ-------IPIML 116 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHC-----------CCEEE
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5689999999998899999999999999999999972 344555555555544322223 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 117 v~nK~Dl~ 124 (181)
T 3t5g_A 117 VGNKKDLH 124 (181)
T ss_dssp EEECTTCT
T ss_pred EEECccch
Confidence 888 9986
No 36
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.81 E-value=1.6e-08 Score=96.54 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=65.6
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
||.|+....+ ...+..+.+||++||...+..|..++.+++++|||+|+++ ...+.+....+..+
T Consensus 195 pT~~~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~ 258 (329)
T 3o47_A 195 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRM 258 (329)
T ss_dssp EETTEEEEEE------EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHH
T ss_pred cccceEEEEE------ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHH
Confidence 3556665556 5667889999999999999999999999999999999997 35677778888888
Q ss_pred hcCccccCccccCCceeEEEEec-cCccCc
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+......+ .|++|++| +|+...
T Consensus 259 ~~~~~~~~-------~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 259 LAEDELRD-------AVLLVFANKQDLPNA 281 (329)
T ss_dssp HTCGGGTT-------CEEEEEEECTTSTTC
T ss_pred HhhhccCC-------CeEEEEEECccCCcc
Confidence 88765555 79999998 998743
No 37
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=86.59 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=51.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... -.+ .|++|
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~il 126 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRYA-SEN-------VNKLL 126 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 5789999999999999999999999999999999972 23333333333332211 112 68888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 127 v~nK~Dl~~~ 136 (196)
T 3tkl_A 127 VGNKCDLTTK 136 (196)
T ss_dssp EEECTTCTTT
T ss_pred EEECcccccc
Confidence 888 998743
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.78 E-value=1.7e-08 Score=85.25 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=50.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+..... .+ .|++
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~pii 124 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTN-PN-------TVII 124 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEE
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEE
Confidence 45789999999998899999999999999999999873 222222223233322110 12 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 125 lv~nK~Dl~~ 134 (179)
T 1z0f_A 125 LIGNKADLEA 134 (179)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 8888 99973
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.77 E-value=3.4e-08 Score=86.29 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=51.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... ..+ .|++
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii 117 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ----------ESFNGVKMWLQEIDRYA-TST-------VLKL 117 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEE
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEE
Confidence 35789999999999999999999999999999999973 23333333334332211 112 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 118 lv~nK~Dl~~ 127 (206)
T 2bcg_Y 118 LVGNKCDLKD 127 (206)
T ss_dssp EEEECTTCTT
T ss_pred EEEECCCCcc
Confidence 8888 99974
No 40
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.77 E-value=3.6e-08 Score=84.99 Aligned_cols=72 Identities=10% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+... ...+ .|+
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~-------~pi 130 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ----------ESFAAVQDWATQIKTY-SWDN-------AQV 130 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTT-------CEE
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCC-------CCE
Confidence 346789999999999999999999999999999999862 2233333333333221 1122 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 131 ilv~nK~Dl~~ 141 (189)
T 2gf9_A 131 ILVGNKCDLED 141 (189)
T ss_dssp EEEEECTTCGG
T ss_pred EEEEECccccc
Confidence 88888 99974
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.77 E-value=2.6e-08 Score=85.14 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=54.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+.......+ .|+++
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil 132 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE----------QSFLNVRNWISQLQMHAYSEN-------PDIVL 132 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSSSSS-------CCEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5789999999998999999999999999999999872 344444555555554332233 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 133 v~nK~Dl~~ 141 (195)
T 3bc1_A 133 CGNKSDLED 141 (195)
T ss_dssp EEECTTCGG
T ss_pred EEECccccc
Confidence 888 99974
No 42
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.77 E-value=3.5e-08 Score=84.91 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=40.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....+..+.......+ .|+++
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~p~il 131 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS----------KSFADINLYREQIKRVKDSDD-------VPMVL 131 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSC-------CCEEE
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCC-------CeEEE
Confidence 5689999999988889999999999999999999873 233333333333322111122 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 132 v~nK~Dl~~ 140 (190)
T 3con_A 132 VGNKCDLPT 140 (190)
T ss_dssp EEECTTCSC
T ss_pred EEECCcCCc
Confidence 888 99874
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.75 E-value=4.1e-08 Score=83.04 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=51.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++-.. ...+..-+..+...+......+ .|+++
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~-------~p~i~ 121 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS-------FQNLSNWKKEFIYYADVKEPES-------FPFVI 121 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHTCSCTTT-------SCEEE
T ss_pred EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH-------HHHHHHHHHHHHHHccccccCC-------CcEEE
Confidence 578999999999999999999999999999999987311 1222223333333333222233 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 122 v~nK~Dl~ 129 (177)
T 1wms_A 122 LGNKIDIS 129 (177)
T ss_dssp EEECTTCS
T ss_pred EEECCccc
Confidence 888 9987
No 44
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.75 E-value=2.6e-08 Score=82.58 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=52.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....+..+.......+ .|++
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~-------~p~i 112 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDD-------VPMV 112 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSC-------CCEE
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence 35688999999988888999999999999999999862 334444444444433221123 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 113 iv~nK~Dl~~ 122 (166)
T 2ce2_X 113 LVGNKSDLAA 122 (166)
T ss_dssp EEEECTTCSC
T ss_pred EEEEchhhhh
Confidence 8888 99874
No 45
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.75 E-value=5.9e-08 Score=84.46 Aligned_cols=74 Identities=8% Similarity=0.084 Sum_probs=51.0
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++-+. ...+..-+..+..........+ .|++
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~-------~pii 121 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT-------FKTLDSWRDEFLIQASPRDPEN-------FPFV 121 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCCSSGGG-------SCEE
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH-------HHHHHHHHHHHHHhcccccCCC-------CcEE
Confidence 3578999999999899999999999999999999987311 1122222233333332222223 6888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|++| +|+.
T Consensus 122 lv~nK~Dl~ 130 (207)
T 1vg8_A 122 VLGNKIDLE 130 (207)
T ss_dssp EEEECTTSS
T ss_pred EEEECCCCc
Confidence 8888 9997
No 46
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=2e-08 Score=87.30 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=52.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+.. +..|..++.+++++|||+|+++. ..+.+....+..+.......+ .|++
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii 136 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR----------GSFEEVLPLKNILDEIKKPKN-------VTLI 136 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSC-------CCEE
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhCCCC-------CcEE
Confidence 45789999999987 88899999999999999999973 344444444444443222223 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 137 lv~NK~Dl~~ 146 (196)
T 2atv_A 137 LVGNKADLDH 146 (196)
T ss_dssp EEEECGGGGG
T ss_pred EEEECccccc
Confidence 8888 99974
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.74 E-value=9.1e-09 Score=89.45 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=50.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc--ccCccccCCceeE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEVFFCATSALHI 298 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~--f~~~~~~~~~~~i 298 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+..... ..+ .|+
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~-------~pi 135 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM----------ESFESCKAWFELLKSARPDRERP-------LRA 135 (208)
T ss_dssp EEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH----------HHHHHHHHHHHHHHHHCSCTTSC-------CEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccccC-------CcE
Confidence 4689999999998889999999999999999999862 344555555555544221 123 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 136 ilv~nK~Dl~~ 146 (208)
T 2yc2_C 136 VLVANKTDLPP 146 (208)
T ss_dssp EEEEECC----
T ss_pred EEEEECcccch
Confidence 88888 99984
No 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.74 E-value=4.3e-08 Score=82.24 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=43.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+... .-.+ .|+++
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil 116 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE----------DSFQKVKNWVKELRKM-LGNE-------ICLCI 116 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-HGGG-------SEEEE
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCC-------CeEEE
Confidence 5789999999998899999999999999999999873 2233333333332221 1112 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 117 v~nK~Dl~~ 125 (170)
T 1z08_A 117 VGNKIDLEK 125 (170)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 888 99974
No 49
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.74 E-value=3.8e-08 Score=85.67 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=52.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+.... ..+ .|++
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii 117 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTYS-WDN-------AQVL 117 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CSS-------CEEE
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEE
Confidence 46789999999998899999999999999999999872 33444444444443211 123 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 118 lv~nK~Dl~~ 127 (203)
T 1zbd_A 118 LVGNKCDMED 127 (203)
T ss_dssp EEEECTTCTT
T ss_pred EEEECcccCc
Confidence 8888 99974
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.73 E-value=7e-08 Score=81.60 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=51.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+... ..+ .|++|
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~-------~p~il 118 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA----------ESFVNVKRWLHEINQN--CDD-------VCRIL 118 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH--CTT-------SEEEE
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CCEEE
Confidence 6789999999999999999999999999999999972 3344444444444321 122 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 119 v~nK~Dl~~ 127 (181)
T 3tw8_B 119 VGNKNDDPE 127 (181)
T ss_dssp EEECTTCGG
T ss_pred EEECCCCch
Confidence 888 99873
No 51
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.73 E-value=6.1e-08 Score=83.88 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=52.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++- ..+.+....|...+.. ...+ .|++
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~p~i 131 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR----------TSFDNISTKWEPEIKH-YIDT-------AKTV 131 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------SEEE
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEE
Confidence 35679999999999999999999999999999999972 3444443434333331 1223 7889
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 132 lv~nK~Dl~~ 141 (194)
T 3reg_A 132 LVGLKVDLRK 141 (194)
T ss_dssp EEEECGGGCC
T ss_pred EEEEChhhcc
Confidence 8888 99873
No 52
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.71 E-value=3.7e-08 Score=83.35 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=53.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+..++......+ .|++|
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~piil 119 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR----------QSFNEVGKLFTQILRVKDRDD-------FPVVL 119 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTSSC-------CCEEE
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 5688999999998889999999999999999999973 345555555555544322223 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 120 v~nK~Dl~~ 128 (181)
T 2fn4_A 120 VGNKADLES 128 (181)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 888 99974
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.71 E-value=5.2e-08 Score=84.68 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=50.7
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+... .+..+... ..+ .|++
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~p~i 128 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP----------SSFQNVSEKWVPEIRCH--CPK-------APII 128 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CSS-------SCEE
T ss_pred EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence 4678999999998899999999999999999999872 34444442 32333221 113 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 129 lv~nK~Dl~~ 138 (201)
T 2q3h_A 129 LVGTQSDLRE 138 (201)
T ss_dssp EEEECGGGGG
T ss_pred EEEECHhhhh
Confidence 8888 99984
No 54
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.70 E-value=3.8e-08 Score=83.78 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=50.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+... .+..+... ..+ .|+
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~pi 112 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP----------ASFENVRAKWYPEVRHH--CPN-------TPI 112 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STT-------SCE
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHHh--CCC-------CCE
Confidence 35678999999998899999999999999999999872 33444432 22222221 113 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++++| +|+..
T Consensus 113 ilv~nK~Dl~~ 123 (186)
T 1mh1_A 113 ILVGTKLDLRD 123 (186)
T ss_dssp EEEEECHHHHT
T ss_pred EEEeEcccccc
Confidence 88888 99874
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=1.5e-08 Score=87.59 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=52.3
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
.....+.+||++|+...+..|..++.+++++|||+|+++- ..++.....++.+.. ....+ .|
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~-------~p 130 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWATQIKT-YSWDN-------AQ 130 (191)
T ss_dssp TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTT-------CE
T ss_pred CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH----------HHHHHHHHHHHHHHH-hcCCC-------CC
Confidence 4457899999999999999999999999999999999862 223333333333322 11123 78
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
++|++| +|+..
T Consensus 131 iilv~nK~Dl~~ 142 (191)
T 3dz8_A 131 VILVGNKCDMEE 142 (191)
T ss_dssp EEEEEECTTCGG
T ss_pred EEEEEECCCCcc
Confidence 888888 99863
No 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=3.1e-08 Score=82.95 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=50.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc-cccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~-~f~~~~~~~~~~~i 298 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++- ..+++....+..+.... ...+ .|+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-------~pi 112 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------QSLEELKPIYEQICEIKGDVES-------IPI 112 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHC---C-------CCE
T ss_pred EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCC-------CCE
Confidence 35689999999998889999999999999999999962 22333333333333211 1123 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++++| +|+..
T Consensus 113 i~v~nK~Dl~~ 123 (172)
T 2erx_A 113 MLVGNKCDESP 123 (172)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEcccccc
Confidence 88888 99874
No 57
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.68 E-value=1.1e-07 Score=81.63 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=50.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|...+.. ...+ .|++
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~-~~~~-------~pii 115 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQE-FCPN-------TKML 115 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------CEEE
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence 45789999999988888999999999999999999862 3344432223222211 1122 7889
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 116 lv~nK~Dl~~ 125 (184)
T 1m7b_A 116 LVGCKSDLRT 125 (184)
T ss_dssp EEEECGGGGG
T ss_pred EEEEcchhhc
Confidence 8888 99973
No 58
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.68 E-value=7.7e-08 Score=81.40 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=52.5
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
+.+..+.+||++|+...+..|..++.+++++|||+|+++- ...++++.+..+.. .+ .|
T Consensus 52 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~-------~p 109 (178)
T 2lkc_A 52 VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----AN-------VP 109 (178)
T ss_dssp ETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GS-------CC
T ss_pred eCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CC-------CC
Confidence 3456788999999999999999999999999999998762 24455555554432 12 68
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++.+| +|+..
T Consensus 110 ~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 110 IIVAINKMDKPE 121 (178)
T ss_dssp EEEEEETTTSSC
T ss_pred EEEEEECccCCc
Confidence 888888 99984
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.68 E-value=5e-08 Score=81.64 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=49.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... -.+ .|+++
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil 113 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------RTFTNIKQWFKTVNEHA-NDE-------AQLLL 113 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcEEE
Confidence 5689999999998899999999999999999999873 22323233333332211 012 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
++| +|+.
T Consensus 114 v~nK~Dl~ 121 (170)
T 1g16_A 114 VGNKSDME 121 (170)
T ss_dssp EEECTTCT
T ss_pred EEECccCC
Confidence 888 9984
No 60
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=3.4e-08 Score=85.28 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=50.2
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc-cccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~-~f~~~~~~~~~~~i 298 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... ...+ .|+
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~-------~pi 117 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK----------QSLEELGPIYKLIVQIKGSVED-------IPV 117 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHSCGGG-------SCE
T ss_pred EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence 45789999999988888999999999999999999873 22332223332222211 1123 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 118 ilv~nK~Dl~~ 128 (199)
T 2gf0_A 118 MLVGNKCDETQ 128 (199)
T ss_dssp EEEEECTTCSS
T ss_pred EEEEECccCCc
Confidence 88888 99873
No 61
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.66 E-value=1.2e-07 Score=84.13 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=53.4
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++ ...+.+++..|-..+... ..+ .|++
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~-~~~-------~pii 135 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY-CPS-------TRVL 135 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH-CTT-------SEEE
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 4678999999999999999999999999999999997 244555444443333221 123 7899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 136 lv~nK~Dl~~ 145 (214)
T 3q3j_B 136 LIGCKTDLRT 145 (214)
T ss_dssp EEEECGGGGG
T ss_pred EEEEChhhcc
Confidence 9998 99974
No 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.65 E-value=6.7e-08 Score=83.26 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=50.5
Q ss_pred ceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||++|+...+ ..|..++.+++++|||+|+++. ..+......++.+.......+ .|++
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii 131 (189)
T 1z06_A 69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNM----------ASFHSLPAWIEECKQHLLAND-------IPRI 131 (189)
T ss_dssp EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHCCCSC-------CCEE
T ss_pred EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 578999999998777 7899999999999999999973 223333333344433211122 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 132 lv~nK~Dl~~ 141 (189)
T 1z06_A 132 LVGNKCDLRS 141 (189)
T ss_dssp EEEECTTCGG
T ss_pred EEEECccccc
Confidence 8888 99974
No 63
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=9.1e-08 Score=83.98 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=50.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....|...+.. ...+ .|+++
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil 134 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP----------DSLENIPEKWVPEVKH-FCPN-------VPIIL 134 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HSTT-------CCEEE
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence 5789999999998899999999999999999999872 3344432222222221 1123 78888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 135 v~nK~Dl~~~ 144 (207)
T 2fv8_A 135 VANKKDLRSD 144 (207)
T ss_dssp EEECGGGGGC
T ss_pred EEEchhhhcc
Confidence 888 999843
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=1.3e-07 Score=81.96 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+.... ..+ .|+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pi 131 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ----------DSFYTLKKWVKELKEHG-PEN-------IVM 131 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT----------HHHHHHHHHHHHHHHHS-CTT-------CEE
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCC-------CcE
Confidence 446789999999998999999999999999999999872 23333333334333211 122 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 132 iiv~NK~Dl~~ 142 (192)
T 2fg5_A 132 AIAGNKCDLSD 142 (192)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECccccc
Confidence 88888 99973
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.65 E-value=1e-07 Score=83.20 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=51.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|...+.. ...+ .|++
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~pii 133 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPN-------VPII 133 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HSTT-------CCEE
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEE
Confidence 35789999999998999999999999999999999862 3344442333333221 1123 7888
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
|++| +|++..
T Consensus 134 lv~nK~Dl~~~ 144 (201)
T 2gco_A 134 LVGNKKDLRQD 144 (201)
T ss_dssp EEEECGGGTTC
T ss_pred EEEecHHhhcC
Confidence 8888 999854
No 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.64 E-value=2.7e-08 Score=87.71 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=53.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..+.......+ .|++
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~-------~pii 145 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCEN-------PDIV 145 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTC-------CEEE
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCC-------CCEE
Confidence 3578999999999889999999999999999999987 2334444444444444322233 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 146 lV~NK~Dl~~ 155 (217)
T 2f7s_A 146 LIGNKADLPD 155 (217)
T ss_dssp EEEECTTCGG
T ss_pred EEEECCcccc
Confidence 8888 99974
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.64 E-value=8.3e-08 Score=82.94 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=51.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+++....+..+.... ..+ .|++|
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~l~~i~~~~-~~~-------~piil 131 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-SSN-------MVIML 131 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 5789999999999999999999999999999999872 23344344444443311 112 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 132 v~nK~Dl~~ 140 (191)
T 2a5j_A 132 IGNKSDLES 140 (191)
T ss_dssp EEECTTCGG
T ss_pred EEECcccCC
Confidence 888 99974
No 68
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.64 E-value=3.9e-08 Score=85.36 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=49.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+++....++.+ ......+ .|++|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~~~~i-~~~~~~~-------~piil 136 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----------ETFDDLPKWMKMI-DKYASED-------AELLL 136 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHH-HHHSCTT-------CEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHH-HHhcCCC-------CcEEE
Confidence 5789999999998889999999999999999999873 2222222222222 2111123 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 137 V~NK~Dl~~ 145 (192)
T 2il1_A 137 VGNKLDCET 145 (192)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 888 99874
No 69
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.64 E-value=1.1e-07 Score=79.25 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=64.1
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..++......+ .
T Consensus 40 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 102 (164)
T 1r8s_A 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRD-------A 102 (164)
T ss_dssp ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcC-------C
Confidence 4567899999999999889999999999999999999987 3567777788888887665555 7
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|++|++| +|+...
T Consensus 103 piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 103 VLLVFANKQDLPNA 116 (164)
T ss_dssp EEEEEEECTTSTTC
T ss_pred eEEEEEECcCCcCC
Confidence 8999998 999743
No 70
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.62 E-value=1.1e-07 Score=82.07 Aligned_cols=72 Identities=6% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
....+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+..... .+ .|+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~s~~~~~~~l~~i~~~~~-~~-------~pi 133 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------QTYAVVERWLKELYDHAE-AT-------IVV 133 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHTTSC-TT-------CEE
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcC-CC-------CeE
Confidence 346789999999998899999999999999999999872 334444455555544321 22 688
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 134 ilv~nK~Dl~~ 144 (193)
T 2oil_A 134 MLVGNKSDLSQ 144 (193)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECCCccc
Confidence 88888 99974
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.62 E-value=1.3e-07 Score=82.99 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=51.7
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|...+.... .+ .|++|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil 139 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHHC-PN-------TPIIL 139 (204)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHHC-SS-------CCEEE
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CC-------CCEEE
Confidence 4577999999999999999999999999999999972 344444433333332211 23 78888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 140 v~nK~Dl~~~ 149 (204)
T 4gzl_A 140 VGTKLDLRDD 149 (204)
T ss_dssp EEECHHHHTC
T ss_pred EEechhhccc
Confidence 888 998743
No 72
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.62 E-value=6.6e-09 Score=97.62 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred ecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH---HHhcCcc-ccCccccCCceeEEEEe
Q 019426 227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPC-FEVFFCATSALHITAFV 302 (341)
Q Consensus 227 DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~---~i~n~~~-f~~~~~~~~~~~iilf~ 302 (341)
|+|||.+.|..|.|||+++++||||||++| ..|++ +.+.|+ .+++.+. +++ +|++||+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~-------apLLVfA 254 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSG-------RPLLVLS 254 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTT-------CCEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCC-------CeEEEEe
Confidence 589999999999999999999999999998 45665 676665 5676654 567 8999999
Q ss_pred c-c-CccCc
Q 019426 303 A-C-EHVSG 309 (341)
Q Consensus 303 n-~-d~~~~ 309 (341)
| . |+...
T Consensus 255 NKkQDlp~A 263 (312)
T 3l2o_B 255 CISQGDVKR 263 (312)
T ss_dssp EESSTTSCB
T ss_pred CCcccccCC
Confidence 8 3 67533
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.60 E-value=1.7e-07 Score=81.93 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=49.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....+..+.... -.+ .|++|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil 130 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE----------RTFTNIKQWFKTVNEHA-NDE-------AQLLL 130 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-TTC-------SEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 5789999999998899999999999999999999873 22333233333333211 112 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
++| +|+.
T Consensus 131 v~nK~Dl~ 138 (213)
T 3cph_A 131 VGNKSDME 138 (213)
T ss_dssp EEECTTCS
T ss_pred EEECCCCc
Confidence 888 9984
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.59 E-value=7.2e-08 Score=84.01 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=49.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... -.+ .|++|
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~il 143 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRYA-SEN-------VNKLL 143 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS----------HHHHHHHHHHHHHHSCC--CC-------SEEEE
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-cCC-------CCEEE
Confidence 5689999999999999999999999999999999972 44555555555553321 123 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 144 v~nK~Dl~~ 152 (199)
T 3l0i_B 144 VGNKCDLTT 152 (199)
T ss_dssp C-CCSSCC-
T ss_pred EEECccCCc
Confidence 888 99873
No 75
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.58 E-value=2.9e-07 Score=81.18 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=50.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|-..+.. ...+ .|++
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~i~~-~~~~-------~pii 136 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQE-FCPN-------TKML 136 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------CEEE
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence 46789999999988888999999999999999999862 3344432222222211 1122 7889
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 137 lv~nK~Dl~~ 146 (205)
T 1gwn_A 137 LVGCKSDLRT 146 (205)
T ss_dssp EEEECGGGGG
T ss_pred EEEechhhcc
Confidence 8888 99973
No 76
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.58 E-value=2.2e-07 Score=80.27 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=49.0
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+ ++.+++++|+|+|+++ ...+++....+..+.......+ .|++|
T Consensus 67 ~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~piil 124 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASE-------VPMVL 124 (184)
T ss_dssp EEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGG-------SCEEE
T ss_pred EEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence 567889999996655 7888999999999997 3456666666677765433233 78898
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 125 v~nK~Dl~ 132 (184)
T 3ihw_A 125 VGTQDAIS 132 (184)
T ss_dssp EEECTTCB
T ss_pred EEECcccc
Confidence 888 9985
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=1.4e-07 Score=83.01 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=49.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+.... -.+ .|++|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil 136 (201)
T 2ew1_A 75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQYA-SNK-------VITVL 136 (201)
T ss_dssp EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 5789999999998888999999999999999999873 22222222223322110 012 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 137 v~NK~Dl~~ 145 (201)
T 2ew1_A 137 VGNKIDLAE 145 (201)
T ss_dssp EEECGGGGG
T ss_pred EEECCCCcc
Confidence 888 99973
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.56 E-value=2.6e-07 Score=79.65 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=71.1
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.|+....+ ...+..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..++
T Consensus 50 t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~ 113 (199)
T 4bas_A 50 TVGYNVETF------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAML 113 (199)
T ss_dssp CSSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHH
T ss_pred ccceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHH
Confidence 456555556 5667899999999999999999999999999999999997 356777778888888
Q ss_pred cCccccCccccCCceeEEEEec-cCccCc
Q 019426 282 KQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
....+.+...+-.-.|++|++| +|+...
T Consensus 114 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 114 KHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp TSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred hChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 8755542111111278999998 999854
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.55 E-value=1.2e-07 Score=83.89 Aligned_cols=73 Identities=8% Similarity=0.049 Sum_probs=52.7
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+... ..+ .|
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~-------~p 121 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRV--CEN-------IP 121 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--STT-------CC
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CC
Confidence 3456789999999999999999999999999999999972 2233333333333321 123 78
Q ss_pred EEEEec-cCccCc
Q 019426 298 ITAFVA-CEHVSG 309 (341)
Q Consensus 298 iilf~n-~d~~~~ 309 (341)
++|++| +|+...
T Consensus 122 ~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 122 IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEECTTSSSC
T ss_pred EEEEEECCccccc
Confidence 898888 998743
No 80
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.55 E-value=1.1e-07 Score=83.98 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=36.7
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++. ..+.+....|-..+.. ...+ .|++|
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil 143 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP----------NSFDNIFNRWYPEVNH-FCKK-------VPIIV 143 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCSS-------CCEEE
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence 4689999999998899999999999999999999872 3344443222222221 1123 78888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 144 v~nK~Dl~~~ 153 (214)
T 2j1l_A 144 VGCKTDLRKD 153 (214)
T ss_dssp EEECGGGGSC
T ss_pred EEEChhhhcc
Confidence 888 999843
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.53 E-value=1.7e-07 Score=78.56 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=46.2
Q ss_pred ceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||++|+...+. .|..++.+++++|+|+|+++- ..+.+....+..+.......+ .|++
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~i 113 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHD-------LPVI 113 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSC-------CCEE
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCCh----------HHHHHHHHHHHHHHhcccCCC-------CCEE
Confidence 4678999999977665 778889999999999999872 334444455555544322223 7889
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+.+| +|+.
T Consensus 114 lv~nK~Dl~ 122 (169)
T 3q85_A 114 LVGNKSDLA 122 (169)
T ss_dssp EEEECTTCG
T ss_pred EEeeCcchh
Confidence 8888 9987
No 82
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.52 E-value=6.1e-07 Score=83.80 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=49.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|-..+... ..+ .|++|
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~p~il 264 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFHHVRAKWYPEVRHH-CPN-------TPIIL 264 (332)
T ss_dssp EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------SCEEE
T ss_pred EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhh-CCC-------CcEEE
Confidence 4567999999999999999999999999999999872 33444432222222211 113 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 265 v~nK~Dl~~ 273 (332)
T 2wkq_A 265 VGTKLDLRD 273 (332)
T ss_dssp EEECHHHHT
T ss_pred EEEchhccc
Confidence 888 99874
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=2.6e-07 Score=79.37 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=59.5
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..+.......+ .
T Consensus 56 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~ 118 (187)
T 1zj6_A 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRK-------A 118 (187)
T ss_dssp EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGGGTT-------C
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchhhCC-------C
Confidence 4567899999999999999999999999999999999997 3567788888888887654444 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++.+| +|+..
T Consensus 119 piilv~NK~Dl~~ 131 (187)
T 1zj6_A 119 GLLIFANKQDVKE 131 (187)
T ss_dssp EEEEEEECTTSTT
T ss_pred eEEEEEECCCCcC
Confidence 8999998 99974
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.50 E-value=4.5e-07 Score=76.22 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=45.4
Q ss_pred ceeEEEecCCccc--cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 221 EVYRLFDVGGQRN--ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 221 ~~~~l~DvgGqr~--eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
..+.+||++|+.. .+..+..++.+++++|+|+|+++- ..+......+..+.......+ .|+
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~-------~pi 114 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADR----------GSFESASELRIQLRRTHQADH-------VPI 114 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHCC-----------CCE
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhccCC-------CCE
Confidence 4688999999976 344456688999999999999972 345555555555554322223 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
++.+| +|+..
T Consensus 115 ilv~NK~Dl~~ 125 (175)
T 2nzj_A 115 ILVGNKADLAR 125 (175)
T ss_dssp EEEEECTTCTT
T ss_pred EEEEEChhhcc
Confidence 88888 99974
No 85
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.49 E-value=3.1e-07 Score=79.74 Aligned_cols=86 Identities=20% Similarity=0.370 Sum_probs=65.4
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i 280 (341)
||.|+....+ ...+..+.+||++|+...+..|..++.+++++|||+|+++ ...+.+....+..+
T Consensus 59 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~ 122 (192)
T 2b6h_A 59 PTIGFNVETV------EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKM 122 (192)
T ss_dssp EETTEEEEEE------EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHH
T ss_pred CcCceeEEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4556655556 5677899999999999889999999999999999999987 35677778888888
Q ss_pred hcCccccCccccCCceeEEEEec-cCccCc
Q 019426 281 LKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
+......+ .|++|++| +|+...
T Consensus 123 ~~~~~~~~-------~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 123 LQEDELRD-------AVLLVFANKQDMPNA 145 (192)
T ss_dssp HTCGGGTT-------CEEEEEEECTTSTTC
T ss_pred hcccccCC-------CeEEEEEECCCCCCC
Confidence 87665555 78999998 999743
No 86
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.48 E-value=5.7e-07 Score=89.89 Aligned_cols=87 Identities=20% Similarity=0.387 Sum_probs=76.9
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~ 279 (341)
.+|.|+....+ .+.+..+.+||++||...+..|..++++++++|||+|+++ ..++.+....+..
T Consensus 351 ~~T~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~----------~~s~~~~~~~~~~ 414 (497)
T 3lvq_E 351 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHR 414 (497)
T ss_dssp CCCSSEEEEEE------ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC----------GGGHHHHHHHHHH
T ss_pred CCccceeEEEE------EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcc----------hhHHHHHHHHHHH
Confidence 46889988888 7788999999999999999999999999999999999997 3678888889999
Q ss_pred HhcCccccCccccCCceeEEEEec-cCccCc
Q 019426 280 VLKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
++......+ .|++|++| +|+...
T Consensus 415 ~~~~~~~~~-------~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 415 IINDREMRD-------AIILIFANKQDLPDA 438 (497)
T ss_dssp HHTSGGGTT-------CEEEEEEECCSSSSC
T ss_pred HhhhhhcCC-------CcEEEEEECCCCCcC
Confidence 998877666 89999999 999743
No 87
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=81.42 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=48.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....++.+.. ....+ .|++
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~-~~~~~-------~pii 137 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE----------KSFLNIREWVDMIED-AAHET-------VPIM 137 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HC----------CCEE
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh----------HHHHHHHHHHHHHHH-hcCCC-------CCEE
Confidence 35689999999998899999999999999999999862 222222222222221 11112 6888
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
|++| +|+.
T Consensus 138 lv~NK~Dl~ 146 (199)
T 2p5s_A 138 LVGNKADIR 146 (199)
T ss_dssp EEEECGGGH
T ss_pred EEEECcccc
Confidence 8888 9986
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.42 E-value=5.8e-07 Score=79.09 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++-.. ...+.+-+..+...+.. + .|++|
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~----~-------~piil 122 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT-------CQNLARWVKEFQAVVGN----E-------APIVV 122 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCS----S-------SCEEE
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcCC----C-------CCEEE
Confidence 568999999999999999999999999999999997311 11222222333333221 2 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
.+| +|+..
T Consensus 123 v~nK~Dl~~ 131 (218)
T 4djt_A 123 CANKIDIKN 131 (218)
T ss_dssp EEECTTCC-
T ss_pred EEECCCCcc
Confidence 888 99874
No 89
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.42 E-value=3.6e-07 Score=78.30 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred hhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426 178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 178 ~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy 257 (341)
+.+..-..+.|.|+..++-....+|.|+.-..... .........+.+||++|+...+..|..++.+++++|||+|+++
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~- 109 (198)
T 3t1o_A 32 KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDI-GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP- 109 (198)
T ss_dssp HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSC-CCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCG-
T ss_pred HHHHhhccccccccccccccccccceeeeeccccc-ccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCc-
Confidence 33333344556665544444455677765443310 0012345689999999999999999999999999999999995
Q ss_pred ccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCc
Q 019426 258 DQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 258 dq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.+..+....|+.+.. |+...-....-.|++|++| +|+...
T Consensus 110 ----------~~~~~~~~s~~~l~~--~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 110 ----------NRLRANAESMRNMRE--NLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp ----------GGHHHHHHHHHHHHH--HHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred ----------chhhHhHHHHHHHHH--HHHhhccccCCCCEEEEEEchhcccc
Confidence 345555555555532 2211101112378999998 998743
No 90
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.39 E-value=1e-06 Score=73.01 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.5
Q ss_pred cCCceeEEEecCCccc-------cccccccccCCccEEEEEeeccC
Q 019426 218 KSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..+..+.+||++|+.. .+..|..++.+++++|||+|.++
T Consensus 46 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (161)
T 2dyk_A 46 TDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA 91 (161)
T ss_dssp ETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS
T ss_pred eCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 3456789999999876 35678888999999999999986
No 91
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.73 E-value=4.4e-08 Score=85.58 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=48.6
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|-..+... ..+ .|+++
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~~l~~~-~~~-------~piil 139 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHH-CPN-------TPIIL 139 (204)
Confidence 3567999999998899999999999999999999862 22333332222222211 112 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 140 v~NK~Dl~~ 148 (204)
T 3th5_A 140 VGTKLDLRD 148 (204)
Confidence 888 99974
No 92
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.23 E-value=5.7e-06 Score=73.63 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=49.4
Q ss_pred cCCceeEEEecCCccc----cc-----cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 218 KSGEVYRLFDVGGQRN----ER-----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~----eR-----~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
..+..+.+||++|+.. ++ ..|..++..++++|||+|+++-.. -.+.+.+.++..+... +.+
T Consensus 73 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--------~~~~~~~~~~~~l~~~--~~~ 142 (228)
T 2qu8_A 73 HKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG--------LTIKEQINLFYSIKSV--FSN 142 (228)
T ss_dssp ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS--------SCHHHHHHHHHHHHTC--C-C
T ss_pred cCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC--------cchHHHHHHHHHHHHh--hcC
Confidence 4457899999999943 33 334556788999999999987311 1133345566665542 223
Q ss_pred ccccCCceeEEEEec-cCccCc
Q 019426 289 FFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++++| +|++..
T Consensus 143 -------~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 143 -------KSIVIGFNKIDKCNM 157 (228)
T ss_dssp -------CCEEEEEECGGGCC-
T ss_pred -------CcEEEEEeCcccCCc
Confidence 78888888 999844
No 93
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.11 E-value=4.8e-06 Score=84.25 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=50.4
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
.+..+.+||++||...+..|..++.+++++|+|+|.+++ .++..-+..+.... .+ .|+
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~-----~~-------~pv 153 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYG-----GK-------SPV 153 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHS-----SS-------CCE
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhC-----CC-------CCE
Confidence 457899999999998888898899999999999999874 22322222222221 12 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 154 ilV~NK~Dl~~ 164 (535)
T 3dpu_A 154 IVVMNKIDENP 164 (535)
T ss_dssp EEEECCTTTCT
T ss_pred EEEEECCCccc
Confidence 99998 99974
No 94
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.05 E-value=3.7e-05 Score=69.80 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=45.4
Q ss_pred ccCCceeEEEecCCccccc-----------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 217 KKSGEVYRLFDVGGQRNER-----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR-----------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
.+.+..+.+||+.|+.... +.+..++.+++++|||+|.+.+. ......+..+..++.. .
T Consensus 67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~~-~ 136 (260)
T 2xtp_A 67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRVKEIFGE-D 136 (260)
T ss_dssp EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHHHHHHCG-G
T ss_pred EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHHHHHhCc-h
Confidence 3456789999999985432 12223678999999999998642 1122233444444432 1
Q ss_pred ccCccccCCceeEEEEec-cCcc
Q 019426 286 FEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
... .+|+++.| +|+.
T Consensus 137 ~~~-------~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 137 AMG-------HTIVLFTHKEDLN 152 (260)
T ss_dssp GGG-------GEEEEEECGGGGT
T ss_pred hhc-------cEEEEEEcccccC
Confidence 122 56777775 9987
No 95
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.01 E-value=5.3e-06 Score=79.33 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=52.1
Q ss_pred CceeEEEecCCcccccc---ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC--ccccCccccCC
Q 019426 220 GEVYRLFDVGGQRNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEVFFCATS 294 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~---kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~--~~f~~~~~~~~ 294 (341)
.+++.+||++||...|. .|.+||.+++++|||+|+++ ++.+++..+..++.. +...+
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd------------~~~~~~~~l~~~l~~~~~~~~~------ 106 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD------------EYINAITNLAMIIEYAYKVNPS------ 106 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS------------CTTHHHHHHHHHHHHHHHHCTT------
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc------------hHHHHHHHHHHHHHHHhhcCCC------
Confidence 37899999999987764 35889999999999999886 145555555544431 11113
Q ss_pred ceeEEEEec-cCccCc
Q 019426 295 ALHITAFVA-CEHVSG 309 (341)
Q Consensus 295 ~~~iilf~n-~d~~~~ 309 (341)
.|++|++| +|+.+.
T Consensus 107 -ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 107 -INIEVLIHKVDGLSE 121 (331)
T ss_dssp -CEEEEECCCCCSSCS
T ss_pred -CcEEEEEECcccCch
Confidence 78999999 999853
No 96
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.98 E-value=2.8e-05 Score=71.12 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=28.7
Q ss_pred ccCCceeEEEecCCccccccccccccC---------CccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFE---------GVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~---------~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+...+.....+++ +++++|||++++.
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~ 128 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV 128 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence 456778999999999654433333332 7899999988875
No 97
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.98 E-value=2.3e-05 Score=70.31 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred cCCceeEEEecCC-----------ccccccccccccCCccEEEEEeeccCcc
Q 019426 218 KSGEVYRLFDVGG-----------QRNERRKWIHLFEGVSAVIFCAAISEYD 258 (341)
Q Consensus 218 ~~~~~~~l~DvgG-----------qr~eR~kW~~~f~~v~~IIFvvslSdyd 258 (341)
+.+..+.+||..| ++..++.|..++.+++++|+|+|++.++
T Consensus 75 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~ 126 (239)
T 3lxx_A 75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT 126 (239)
T ss_dssp ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence 4556789999999 3345566677788999999999998753
No 98
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.96 E-value=1.3e-05 Score=68.03 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=42.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+......+..+.... ..+ .|++|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil 118 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIEEHA-SAD-------VEKMI 118 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 6899999999998899999999999999999999872 33444444444443321 112 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 119 v~nK~Dl~~ 127 (183)
T 2fu5_C 119 LGNKCDVND 127 (183)
T ss_dssp EEEC--CCS
T ss_pred EEECccCCc
Confidence 888 99974
No 99
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=1.8e-05 Score=66.72 Aligned_cols=71 Identities=7% Similarity=0.099 Sum_probs=43.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+..... .+ .|++
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~-------~pii 120 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHEYAQ-HD-------VALM 120 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CC-------CcEE
Confidence 35799999999999999999999999999999999873 222222222333322110 22 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 121 lv~nK~Dl~~ 130 (180)
T 2g6b_A 121 LLGNKVDSAH 130 (180)
T ss_dssp EEEECCSTTS
T ss_pred EEEECcccCc
Confidence 8888 99984
No 100
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.92 E-value=2.1e-05 Score=72.29 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=48.9
Q ss_pred ccCCceeEEEecCCcccccc------cccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERR------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~------kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+.+..+.+||.+|+...+. .|..|+ .+++++|+|+|.++. ...+.++..+.... .
T Consensus 46 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~-------------~~~~~~~~~~~~~~---~ 109 (271)
T 3k53_A 46 EYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL-------------MRNLFLTLELFEME---V 109 (271)
T ss_dssp EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHHTT---C
T ss_pred EECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc-------------hhhHHHHHHHHhcC---C
Confidence 45667899999999977655 566676 789999999999863 23444444444321 1
Q ss_pred ccccCCceeEEEEec-cCcc
Q 019426 289 FFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~ 307 (341)
.|+++++| +|+.
T Consensus 110 -------~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 110 -------KNIILVLNKFDLL 122 (271)
T ss_dssp -------CSEEEEEECHHHH
T ss_pred -------CCEEEEEEChhcC
Confidence 67888888 9976
No 101
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.91 E-value=1.3e-05 Score=69.86 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=52.5
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+++....++.+.... -.+ .|++|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil 139 (201)
T 2hup_A 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR----------SSFLSVPHWIEDVRKYA-GSN-------IVQLL 139 (201)
T ss_dssp EEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred EEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence 6899999999998899999999999999999999862 33444444444444321 122 78888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 140 v~NK~Dl~~ 148 (201)
T 2hup_A 140 IGNKSDLSE 148 (201)
T ss_dssp EEECTTCGG
T ss_pred EEECCcccc
Confidence 888 99974
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.90 E-value=1.4e-05 Score=67.24 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=34.2
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..+.+||++|+...+..|..++.+++++|||+|+++
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN 91 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC
Confidence 689999999999999999999999999999999987
No 103
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.88 E-value=4.1e-05 Score=65.18 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.5
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
...||+++|..++|||||++++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999875
No 104
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.77 E-value=7.4e-05 Score=64.04 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=51.1
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
...+.+||++|+...+..|..++.+++++|||+|+++. ..+.+... .+..+... ..+ .|+
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~pi 125 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP----------ASFQNVKEEWVPELKEY--APN-------VPF 125 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STT-------CCE
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCE
Confidence 36789999999998999999999999999999999872 33444432 22222221 113 788
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|++| +|+..
T Consensus 126 ilv~nK~Dl~~ 136 (194)
T 2atx_A 126 LLIGTQIDLRD 136 (194)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEEChhhcc
Confidence 88888 99984
No 105
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.76 E-value=4.8e-05 Score=65.79 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=51.2
Q ss_pred CCceeEEEecCCccc-ccccc--ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccC
Q 019426 219 SGEVYRLFDVGGQRN-ERRKW--IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCAT 293 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~-eR~kW--~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~ 293 (341)
....+.+||++||.. .+..| ..+|.+++++|||+|+++ +..++...+...+... ...+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~~~~~~~~~l~~~~~~~~~----- 129 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD------------DYMEALTRLHITVSKAYKVNPD----- 129 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS------------CCHHHHHHHHHHHHHHHHHCTT-----
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC------------chHHHHHHHHHHHHHHHhcCCC-----
Confidence 457899999999976 45567 799999999999999886 2444554444444321 1123
Q ss_pred CceeEEEEec-cCccC
Q 019426 294 SALHITAFVA-CEHVS 308 (341)
Q Consensus 294 ~~~~iilf~n-~d~~~ 308 (341)
.|++|++| +|++.
T Consensus 130 --~piilv~nK~Dl~~ 143 (196)
T 3llu_A 130 --MNFEVFIHKVDGLS 143 (196)
T ss_dssp --CEEEEEEECGGGSC
T ss_pred --CcEEEEEeccccCc
Confidence 78999998 99874
No 106
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.74 E-value=5.5e-05 Score=66.86 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=51.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... ..+ .|++|
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~----------~s~~~~~~~l~~i~~~~-~~~-------~piil 123 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------SSYENCNHWLSELRENA-DDN-------VAVGL 123 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH----------HHHHHHHHHHHHHHHHC-C---------CEEEE
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence 6899999999999999999999999999999999872 33444444444443321 122 68888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 124 v~nK~Dl~~ 132 (223)
T 3cpj_B 124 IGNKSDLAH 132 (223)
T ss_dssp EECCGGGGG
T ss_pred EEECccccc
Confidence 888 99974
No 107
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.74 E-value=5.5e-05 Score=62.77 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++ ...+++....+..+.......+ .|++
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i 110 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDD-------VPII 110 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---C-------CCEE
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 4578999999999999999999999999999999997 3456666666677765433334 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+.+| +|+..
T Consensus 111 lv~nK~Dl~~ 120 (166)
T 3q72_A 111 LVGNKSDLVR 120 (166)
T ss_dssp EEEECTTCCS
T ss_pred EEEecccccc
Confidence 8888 99874
No 108
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.71 E-value=3.6e-05 Score=65.17 Aligned_cols=72 Identities=7% Similarity=0.122 Sum_probs=51.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|+|+|+++- ..+......+..+.......+ .|++
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~i 127 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK----------ASFEHVDRFHQLILRVKDRES-------FPMI 127 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSC-------CCEE
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence 34577899999999999999999999999999999972 233333344444433222223 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|++| +|+..
T Consensus 128 lv~nK~Dl~~ 137 (183)
T 3kkq_A 128 LVANKVDLMH 137 (183)
T ss_dssp EEEECTTCST
T ss_pred EEEECCCchh
Confidence 8888 99874
No 109
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.67 E-value=5.4e-05 Score=65.96 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=49.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|-..+... ..+ .|++
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii 117 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK----------ASYENVLKKWMPELRRF-APN-------VPIV 117 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CCEE
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 46899999999999999999999999999999999872 33444432222222211 113 7888
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
|++| +|+...
T Consensus 118 lv~nK~Dl~~~ 128 (212)
T 2j0v_A 118 LVGTKLDLRDD 128 (212)
T ss_dssp EEEECHHHHTC
T ss_pred EEEeCHHhhhC
Confidence 8888 998743
No 110
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.64 E-value=0.00038 Score=69.42 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=41.5
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
|..+....| ...+..+.+||+.|+...++.+..++.+++++|+|+|.++
T Consensus 98 Ti~~~~~~~------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 98 TVSICTSHF------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 146 (483)
T ss_dssp SCCCCEEEE------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEeeeEEE------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCC
Confidence 344445556 5667899999999999999999999999999999999986
No 111
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.63 E-value=8.4e-05 Score=62.19 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=51.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... -.+ .|++
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii 123 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT----------NSFHQTSKWIDDVRTER-GSD-------VIIM 123 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTS-------SEEE
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence 35799999999998999999999999999999999862 22333334444443321 122 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 124 lv~nK~Dl~~ 133 (179)
T 2y8e_A 124 LVGNKTDLSD 133 (179)
T ss_dssp EEEECGGGGG
T ss_pred EEEECCcccc
Confidence 8888 99873
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.61 E-value=8.7e-05 Score=69.68 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=56.1
Q ss_pred ccCeEEEEeccCCCccc-CCceeEEEecCCcccc-----ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH
Q 019426 202 TTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 275 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~-~~~~~~l~DvgGqr~e-----R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~ 275 (341)
|.|+....+ .+ ++..+.+||++||... +..|..+|.+++++|||+|+++- ..+++...
T Consensus 38 Ti~~~~~~~------~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~----------~s~~~l~~ 101 (307)
T 3r7w_A 38 TIDVEHSHL------RFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST----------EVLKDIEI 101 (307)
T ss_dssp CCSEEEEEE------EETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS----------CHHHHHHH
T ss_pred ccceEEEEE------EeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh----------hhHHHHHH
Confidence 455555544 22 4688999999999877 77899999999999999999872 22333222
Q ss_pred ---HHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426 276 ---LFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 276 ---lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
.+..+... ..+ .|+++++| +|+..
T Consensus 102 ~~~~l~~l~~~--~~~-------~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 102 FAKALKQLRKY--SPD-------AKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHHH--CTT-------CEEEEEEECGGGSC
T ss_pred HHHHHHHHHHh--CCC-------CeEEEEEecccccc
Confidence 22222211 112 78999998 99985
No 113
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.60 E-value=7.3e-05 Score=66.84 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI 298 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i 298 (341)
..+.+.+||++||...+..|..||.+++++|+|.|+++. +.++.....+..+.... -.+ .||
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~----------~Sf~~i~~~~~~i~~~~-~~~-------~pi 121 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV----------NSFQQTTKWIDDVRTER-GSD-------VII 121 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTS-------SEE
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh----------HHHHHHHHHHHHHHHhc-CCC-------CeE
Confidence 346789999999999999999999999999999999973 34444444444443321 112 789
Q ss_pred EEEec-cCccC
Q 019426 299 TAFVA-CEHVS 308 (341)
Q Consensus 299 ilf~n-~d~~~ 308 (341)
+|.+| +|+..
T Consensus 122 ilVgNK~Dl~~ 132 (216)
T 4dkx_A 122 MLVGNKTDLAD 132 (216)
T ss_dssp EEEEECTTCGG
T ss_pred EEEeeccchHh
Confidence 99999 99874
No 114
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.58 E-value=5.4e-05 Score=63.80 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=48.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++|+...+..|..++.+++++|||+|+++- ..+++....|...+... ..+ .|++
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii 116 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHY-APG-------VPIV 116 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CCEE
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence 35678999999999999999999999999999999862 33433332222222211 113 7888
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
|.+| +|+...
T Consensus 117 lv~nK~Dl~~~ 127 (182)
T 3bwd_D 117 LVGTKLDLRDD 127 (182)
T ss_dssp EEEECHHHHTC
T ss_pred EEEechhhhcC
Confidence 8888 998743
No 115
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.55 E-value=0.00018 Score=69.58 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=39.2
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..|.++....| ...+..+.+||+.|+....+.....+..++++|+|+| ++
T Consensus 45 giTi~~~~~~~------~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~ 94 (370)
T 2elf_A 45 GTSSDITMYNN------DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ 94 (370)
T ss_dssp EEESSSEEEEE------CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred CEEEEeeEEEE------ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC
Confidence 34444444556 5667789999999998887888888899999999999 53
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.54 E-value=0.00013 Score=62.64 Aligned_cols=73 Identities=5% Similarity=0.079 Sum_probs=48.7
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCc
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSA 295 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~ 295 (341)
.....+.+||++|+...+. |..++.+++++|+|+|+++ ...+++....+..+.... ...+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~------- 127 (187)
T 3c5c_A 66 HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRS------- 127 (187)
T ss_dssp TEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCC-------
T ss_pred CEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCC-------
Confidence 3456789999999976655 6788999999999999996 234555444444444321 0123
Q ss_pred eeEEEEec-cCccC
Q 019426 296 LHITAFVA-CEHVS 308 (341)
Q Consensus 296 ~~iilf~n-~d~~~ 308 (341)
.|++|.+| +|+..
T Consensus 128 ~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 128 IPALLLGNKLDMAQ 141 (187)
T ss_dssp CCEEEEEECGGGGG
T ss_pred CCEEEEEECcchhh
Confidence 78888888 99973
No 117
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.47 E-value=5.1e-05 Score=64.91 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=54.6
Q ss_pred ceeEEEecCCccccccccccccCC----ccEEEEEeecc-CcccccccCCCccchHHHHHHHHHHhcCccc---cCcccc
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAIS-EYDQTLFEDEQKNRMMETKELFDWVLKQPCF---EVFFCA 292 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~----v~~IIFvvslS-dydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f---~~~~~~ 292 (341)
..+.+||++|+...+..|..++.+ ++++|||+|.+ + ...+.+....+..++..... .+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENG---- 156 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTC----
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccC----
Confidence 468899999999888999998876 89999999998 3 34566666666666654322 22
Q ss_pred CCceeEEEEec-cCccCc
Q 019426 293 TSALHITAFVA-CEHVSG 309 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~~ 309 (341)
.|+++++| +|+...
T Consensus 157 ---~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 157 ---IDILIACNKSELFTA 171 (193)
T ss_dssp ---CCEEEEEECTTSTTC
T ss_pred ---CCEEEEEEchHhcCC
Confidence 78888888 999843
No 118
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.47 E-value=0.00027 Score=60.02 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=49.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....+..+.... + .|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~---~-------~piil 152 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS----------NTLDRAKTWVNQLKISS---N-------YIIIL 152 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS---C-------CEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhC---C-------CcEEE
Confidence 7899999999998889999999999999999999872 23334344444443311 1 68888
Q ss_pred Eec-cC
Q 019426 301 FVA-CE 305 (341)
Q Consensus 301 f~n-~d 305 (341)
.+| +|
T Consensus 153 v~NK~D 158 (208)
T 3clv_A 153 VANKID 158 (208)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 888 99
No 119
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.40 E-value=8.4e-05 Score=65.01 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=56.2
Q ss_pred ceeEEEecCCccccccccccccCC----ccEEEEEeecc-CcccccccCCCccchHHHHHHHHHHhcCccc---cCcccc
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAIS-EYDQTLFEDEQKNRMMETKELFDWVLKQPCF---EVFFCA 292 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~----v~~IIFvvslS-dydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f---~~~~~~ 292 (341)
..+.+||++|+...|..|..++.+ ++++|||+|.+ + ...+.+....+..++..... .+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~---- 120 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENG---- 120 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTC----
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCC----
Confidence 468999999999999999999887 89999999998 3 34566666667776654322 23
Q ss_pred CCceeEEEEec-cCccCcc
Q 019426 293 TSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~~~ 310 (341)
.|++|.+| +|+....
T Consensus 121 ---~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 121 ---IDILIACNKSELFTAR 136 (218)
T ss_dssp ---CCEEEEEECTTSTTCC
T ss_pred ---CCEEEEEEchHhcccC
Confidence 78898888 9998543
No 120
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.0018 Score=61.84 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=46.3
Q ss_pred cCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 218 KSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
..+..+.+||..|+.... .....+...+++++||+|.++... --+.+...+++.+... +.+
T Consensus 211 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~--------~~~~~~~~~~~~i~~~--~~~ 280 (357)
T 2e87_A 211 DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCG--------FPLEEQIHLFEEVHGE--FKD 280 (357)
T ss_dssp ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTS--------SCHHHHHHHHHHHHHH--TTT
T ss_pred ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcccc--------CCHHHHHHHHHHHHHh--cCC
Confidence 345678999999985321 222234456899999999886321 0234445555555431 113
Q ss_pred ccccCCceeEEEEec-cCccCc
Q 019426 289 FFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++.+| +|+...
T Consensus 281 -------~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 281 -------LPFLVVINKIDVADE 295 (357)
T ss_dssp -------SCEEEEECCTTTCCH
T ss_pred -------CCEEEEEECcccCCh
Confidence 68888888 999743
No 121
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.36 E-value=0.00047 Score=63.31 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
..++|+|+|.+|+|||||++.+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999875
No 122
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.27 E-value=0.0016 Score=64.90 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=22.0
Q ss_pred cCCceeEEEecCCcccccccc--------ccccCCccEEEEEeeccC
Q 019426 218 KSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW--------~~~f~~v~~IIFvvslSd 256 (341)
+++..+.+||..|++.....| ..++.+++++|||+|.++
T Consensus 269 ~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 315 (462)
T 3geh_A 269 VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT 315 (462)
T ss_dssp ETTEEEEECC--------------------CCCCSCSEEEEEEETTT
T ss_pred ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence 345667889999986543322 346789999999999986
No 123
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.25 E-value=0.0018 Score=60.49 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=44.8
Q ss_pred CCceeEEEecCCcc---------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426 219 SGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF 289 (341)
Q Consensus 219 ~~~~~~l~DvgGqr---------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~ 289 (341)
++..+.++|++|+. ..+..+..++.++++++||+|.+++. .. ...+++.+.. .+
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~----------~~--~~~i~~~l~~----~~- 116 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT----------PD--DEMVLNKLRE----GK- 116 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC----------HH--HHHHHHHHHS----SS-
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC----------HH--HHHHHHHHHh----cC-
Confidence 34578899999986 23445667889999999999987631 11 1223333322 12
Q ss_pred cccCCceeEEEEec-cCccC
Q 019426 290 FCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 290 ~~~~~~~~iilf~n-~d~~~ 308 (341)
.|+++++| +|+..
T Consensus 117 ------~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 117 ------APVILAVNKVDNVQ 130 (301)
T ss_dssp ------SCEEEEEESTTTCC
T ss_pred ------CCEEEEEECcccCc
Confidence 68888888 99984
No 124
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.18 E-value=0.00022 Score=61.75 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=49.0
Q ss_pred ceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+.+.+||++|+...+. .|..++.+++++|+|+|+++- ..+......+..+.......+ .|++
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii 134 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHD-------LPVI 134 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSC-------CCEE
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence 4678999999976554 677789999999999999872 333334444444433221122 7888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 135 lv~nK~Dl~~ 144 (195)
T 3cbq_A 135 LVGNKSDLAR 144 (195)
T ss_dssp EEEECTTCTT
T ss_pred EEeechhccc
Confidence 8888 99974
No 125
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.10 E-value=0.00098 Score=55.85 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=43.3
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH---HHHHHhcCccccCccccCCce
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE---LFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~---lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+.+||++||.. ..++.+++++|+|+|+++- ..+..... .+..+.... ..+ .
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~-~~~-------~ 109 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDE----------NSFQAVSRLHGQLSSLRGEG-RGG-------L 109 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCSS-SCC-------C
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHHhcC-CCC-------C
Confidence 35789999999864 4578899999999999862 33433333 233332211 122 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|++|.+| +|+.
T Consensus 110 piilv~nK~Dl~ 121 (178)
T 2iwr_A 110 ALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECTTCB
T ss_pred CEEEEEECcccc
Confidence 8888888 9984
No 126
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.01 E-value=0.00052 Score=58.50 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=48.5
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
...+.+||++||...+..|..++.+++++++|+|+++-. ..+......+..+... ..+ .|++
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~--~~~-------~pii 116 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKAR--ASS-------SPVI 116 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHH--CTT-------CEEE
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhh--CCC-------CcEE
Confidence 568999999999888888888999999999999998621 1122222222322211 112 7889
Q ss_pred EEec-cCccCc
Q 019426 300 AFVA-CEHVSG 309 (341)
Q Consensus 300 lf~n-~d~~~~ 309 (341)
|.+| +|+...
T Consensus 117 lv~nK~Dl~~~ 127 (184)
T 2zej_A 117 LVGTHLDVSDE 127 (184)
T ss_dssp EEEECGGGCCH
T ss_pred EEEECCCcccc
Confidence 9988 898743
No 127
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.95 E-value=0.0016 Score=63.43 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=46.1
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+....+.+......++++|+|+|.++-. .+..+.+.+..+- .+. ..|+++
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~----------~~~qt~e~l~~~~---~~~-------~~~iiv 142 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC----------PRPQTREHLMALQ---IIG-------QKNIII 142 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS----------SCHHHHHHHHHHH---HHT-------CCCEEE
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC----------CChhHHHHHHHHH---HcC-------CCcEEE
Confidence 46899999999877777777778899999999988621 1233333332221 111 156888
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 143 viNK~Dl~~ 151 (410)
T 1kk1_A 143 AQNKIELVD 151 (410)
T ss_dssp EEECGGGSC
T ss_pred EEECccCCC
Confidence 888 99984
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.74 E-value=0.0038 Score=56.40 Aligned_cols=74 Identities=7% Similarity=0.051 Sum_probs=49.0
Q ss_pred ccCCceeEEEecCCccc--------ccccccccc----CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426 217 KKSGEVYRLFDVGGQRN--------ERRKWIHLF----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~--------eR~kW~~~f----~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~ 284 (341)
...+..+.+||+.|... .++.+..|+ .+++++|+|+|.+.+. ..-...++.+..++..
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~~- 135 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT---------AQDQQAVRQVRDMFGE- 135 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC---------HHHHHHHHHHHHHHCG-
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC---------HHHHHHHHHHHHHhCh-
Confidence 45678899999999732 233344444 8999999999998642 1223345555555543
Q ss_pred cccCccccCCceeEEEEec-cCcc
Q 019426 285 CFEVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 285 ~f~~~~~~~~~~~iilf~n-~d~~ 307 (341)
...+ .|++||+| +|+.
T Consensus 136 ~~~~-------~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 136 DVLK-------WMVIVFTRKEDLA 152 (247)
T ss_dssp GGGG-------GEEEEEECGGGGT
T ss_pred hhhc-------cEEEEEEchHhcC
Confidence 2333 78999999 7775
No 129
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.65 E-value=0.0031 Score=63.75 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=55.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||+.|+...+..|..++..++++|+|+|.++- -......+|..+... + .
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-----------~~~~t~~~~~~~~~~----~-------i 135 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-----------VEPRTIKLMEVCRLR----H-------T 135 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHHTT----T-------C
T ss_pred EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHHHc----C-------C
Confidence 56778999999999999999999999999999999999862 134455666555432 3 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 136 PiivviNK~Dl~~ 148 (528)
T 3tr5_A 136 PIMTFINKMDRDT 148 (528)
T ss_dssp CEEEEEECTTSCC
T ss_pred CEEEEEeCCCCcc
Confidence 8999999 99963
No 130
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.0029 Score=55.94 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=50.1
Q ss_pred ceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||+.|+.. ++..+..|+.+++++|+|.|+++ ...++.....+..+.......+ .|++
T Consensus 87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~-------~pii 149 (211)
T 2g3y_A 87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTED-------IPII 149 (211)
T ss_dssp EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTT-------SCEE
T ss_pred eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCC-------CcEE
Confidence 4567899999876 44455667889999999999997 3455555555555544322223 7899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 150 lVgNK~DL~~ 159 (211)
T 2g3y_A 150 LVGNKSDLVR 159 (211)
T ss_dssp EEEECTTCGG
T ss_pred EEEEChHHhc
Confidence 9999 99873
No 131
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.56 E-value=0.0042 Score=53.39 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=47.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+..+... .-.+ .|+++
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~~i~~ 115 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSN-------IVIML 115 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTT-------CEEEE
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCC-------CeEEE
Confidence 5678999999988888899999999999999998863 2222222233333211 1112 68888
Q ss_pred Eec-cCcc
Q 019426 301 FVA-CEHV 307 (341)
Q Consensus 301 f~n-~d~~ 307 (341)
.+| +|+.
T Consensus 116 v~nK~Dl~ 123 (199)
T 2f9l_A 116 VGNKSDLR 123 (199)
T ss_dssp EEECTTCG
T ss_pred EEECcccc
Confidence 888 9986
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.51 E-value=0.0047 Score=56.36 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=48.4
Q ss_pred ccCCceeEEEecCCcccccccc------cccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKW------IHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW------~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
...+..+.+||++|+.+.+..| ..++ .+++++|+|+|.++.. ..+.++..+... +
T Consensus 48 ~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~-------------~~~~~~~~l~~~----~ 110 (258)
T 3a1s_A 48 TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE-------------QSLYLLLEILEM----E 110 (258)
T ss_dssp EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH-------------HHHHHHHHHHTT----T
T ss_pred EECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh-------------hHHHHHHHHHhc----C
Confidence 4556789999999998777655 3444 6899999999998732 223344555432 2
Q ss_pred ccccCCceeEEEEec-cCcc
Q 019426 289 FFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~ 307 (341)
.|+++.+| +|+.
T Consensus 111 -------~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 111 -------KKVILAMTAIDEA 123 (258)
T ss_dssp -------CCEEEEEECHHHH
T ss_pred -------CCEEEEEECcCCC
Confidence 78899998 9986
No 133
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.43 E-value=0.0069 Score=56.50 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=30.7
Q ss_pred eeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
++.+||+ |...+..|..++.+++++|+|+|+++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~ 96 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM 96 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSST
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCC
Confidence 7899999 87788899999999999999999997
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.36 E-value=0.0058 Score=55.70 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=48.3
Q ss_pred ccCCceeEEEecCCcccccc----------cccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426 217 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~----------kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~ 284 (341)
.+++..+.+||++|+.+.+. .+..++ .++++||||+|.++ ++..+.+...+...
T Consensus 44 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~-------------~~~~~~l~~~l~~~- 109 (256)
T 3iby_A 44 LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH-------------LERHLYLTSQLFEL- 109 (256)
T ss_dssp EETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG-------------HHHHHHHHHHHTTS-
T ss_pred EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC-------------chhHHHHHHHHHHc-
Confidence 45667899999999976654 355666 89999999999986 23334444444332
Q ss_pred cccCccccCCceeEEEEec-cCccC
Q 019426 285 CFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 285 ~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+ .|+++.+| +|+..
T Consensus 110 ---~-------~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 110 ---G-------KPVVVALNMMDIAE 124 (256)
T ss_dssp ---C-------SCEEEEEECHHHHH
T ss_pred ---C-------CCEEEEEEChhcCC
Confidence 2 68888888 99873
No 135
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.33 E-value=0.0059 Score=61.74 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=53.3
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||++|+...+..+..++..++++|+|+|.++-. ......+++.+.. .+ .
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-----------~~~t~~~~~~~~~----~~-------i 135 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-----------EDRTRKLMEVTRL----RD-------T 135 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHTT----TT-------C
T ss_pred EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-----------hHHHHHHHHHHHH----cC-------C
Confidence 567889999999999888888888999999999999998631 1233444443322 13 6
Q ss_pred eEEEEec-cCccCc
Q 019426 297 HITAFVA-CEHVSG 309 (341)
Q Consensus 297 ~iilf~n-~d~~~~ 309 (341)
|+++++| +|+...
T Consensus 136 piivviNK~Dl~~~ 149 (529)
T 2h5e_A 136 PILTFMNKLDRDIR 149 (529)
T ss_dssp CEEEEEECTTSCCS
T ss_pred CEEEEEcCcCCccc
Confidence 8899999 999743
No 136
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.29 E-value=0.006 Score=59.13 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=55.6
Q ss_pred ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (341)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~ 281 (341)
|.++....| ...+..+.+||+.|+....+.+..++..++++|+|+|.++- -+.++++.+..+.
T Consensus 53 Ti~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~ 115 (397)
T 1d2e_A 53 TINAAHVEY------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLAR 115 (397)
T ss_dssp EEECEEEEE------ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHH
T ss_pred EEEeeeEEe------ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHH
Confidence 444444556 45678899999999988888888999999999999999862 1334444443222
Q ss_pred cCccccCccccCCcee-EEEEec-cCccC
Q 019426 282 KQPCFEVFFCATSALH-ITAFVA-CEHVS 308 (341)
Q Consensus 282 n~~~f~~~~~~~~~~~-iilf~n-~d~~~ 308 (341)
. .+ .| +++++| +|+..
T Consensus 116 ~----~~-------vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 116 Q----IG-------VEHVVVYVNKADAVQ 133 (397)
T ss_dssp H----TT-------CCCEEEEEECGGGCS
T ss_pred H----cC-------CCeEEEEEECcccCC
Confidence 1 12 45 678888 99983
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.22 E-value=0.0034 Score=61.60 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=43.5
Q ss_pred ccCCceeEEEecCCcc--------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr--------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+.+..+.+||+||+. ..+..|..++++++++|||+|.++- +...-..+..++.. .+
T Consensus 47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~------------~~~~d~~~~~~l~~---~~ 111 (436)
T 2hjg_A 47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---TK 111 (436)
T ss_dssp TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC------------SCHHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CCHHHHHHHHHHHH---cC
Confidence 5667789999999985 4567788899999999999998752 11111222233321 12
Q ss_pred ccccCCceeEEEEec-cCccC
Q 019426 289 FFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~ 308 (341)
.|++|.+| +|...
T Consensus 112 -------~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 112 -------KPVVLAVNKLDNTE 125 (436)
T ss_dssp -------SCEEEEEECCCC--
T ss_pred -------CCEEEEEECccCcc
Confidence 68899998 99874
No 138
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.19 E-value=0.0079 Score=58.34 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=51.3
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||+.|+....+.+..++..++++|+|+|.++-. +..+.+.+..+.. .+ .
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-----------~~qt~~~l~~~~~----~~-------i 128 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-----------MPQTREHILLARQ----VG-------V 128 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-----------CHHHHHHHHHHHH----TT-------C
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----cC-------C
Confidence 456788999999999988888999999999999999988621 2333444433321 12 4
Q ss_pred e-EEEEec-cCccC
Q 019426 297 H-ITAFVA-CEHVS 308 (341)
Q Consensus 297 ~-iilf~n-~d~~~ 308 (341)
| +++++| +|+..
T Consensus 129 p~iivviNK~Dl~~ 142 (405)
T 2c78_A 129 PYIVVFMNKVDMVD 142 (405)
T ss_dssp CCEEEEEECGGGCC
T ss_pred CEEEEEEECccccC
Confidence 5 788888 99983
No 139
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.15 E-value=0.013 Score=57.48 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=36.1
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+....+.|..++..++++|+|+|.++
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 4566789999999999888899999999999999999886
No 140
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.12 E-value=0.0049 Score=55.86 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=42.2
Q ss_pred cCCccccccccccccC---------------------CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426 228 VGGQRNERRKWIHLFE---------------------GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (341)
Q Consensus 228 vgGqr~eR~kW~~~f~---------------------~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f 286 (341)
.+||...+..|..+|. +++++|+|+|+++-. ...++.....+..+......
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~--------~~s~~~~~~~l~~i~~~~~~ 196 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM--------NRNFDDQLKFVSNLYNQLAK 196 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC------------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc--------hhhHHHHHHHHHHHHHHhcc
Confidence 6788777888888888 799999999998620 02233333333333322111
Q ss_pred cCccccCCceeEEEEec-cCccC
Q 019426 287 EVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 287 ~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
.+ .|++|.+| +|+..
T Consensus 197 ~~-------~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 197 TK-------KPIVVVLTKCDEGV 212 (255)
T ss_dssp TT-------CCEEEEEECGGGBC
T ss_pred CC-------CCEEEEEEcccccc
Confidence 23 78899998 99863
No 141
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.11 E-value=0.0053 Score=52.75 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=46.1
Q ss_pred ceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 221 EVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 221 ~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
..+.+||+.|+.. ++..|..|+.+++++|+|.|+++ ...+......+..+.....-.+ .|++
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~-------~pii 118 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTED-------IPII 118 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCC-------CeEE
Confidence 3567899988866 56667778889999999999997 2444444444443432111112 6889
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
|.+| +|+..
T Consensus 119 lV~NK~Dl~~ 128 (192)
T 2cjw_A 119 LVGNKSDLVR 128 (192)
T ss_dssp EEEECTTCGG
T ss_pred EEEechhhhc
Confidence 9998 99873
No 142
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.0071 Score=50.94 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=45.9
Q ss_pred ccCCceeEEEecCCccccc------cccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR------~kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+++..+.+||++|+...+ ..|..++. +++++++|+|.+++++ + ...+..+.. .+
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~---~~~~~~~~~----~~ 112 (188)
T 2wjg_A 50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER----------N---LYLTLQLME----MG 112 (188)
T ss_dssp EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHH----------H---HHHHHHHHT----TT
T ss_pred EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHH----------H---HHHHHHHHh----cC
Confidence 3456789999999997654 34666774 5899999999987421 1 223333332 12
Q ss_pred ccccCCceeEEEEec-cCccC
Q 019426 289 FFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~ 308 (341)
.|+++++| +|+..
T Consensus 113 -------~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 113 -------ANLLLALNKMDLAK 126 (188)
T ss_dssp -------CCEEEEEECHHHHH
T ss_pred -------CCEEEEEEhhhccc
Confidence 67888888 99863
No 143
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.05 E-value=0.0094 Score=49.55 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=43.9
Q ss_pred cCCceeEEEecCCcccccccc------ccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426 218 KSGEVYRLFDVGGQRNERRKW------IHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF 289 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW------~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~ 289 (341)
+.+..+.+||++|+...+..| ..++. +++++++|+|.++++ ++ ...+..+.. .+
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~----------~~---~~~~~~~~~----~~- 108 (165)
T 2wji_A 47 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE----------RN---LYLTLQLME----MG- 108 (165)
T ss_dssp ETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH----------HH---HHHHHHHHH----TT-
T ss_pred ECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh----------Hh---HHHHHHHHh----cC-
Confidence 345679999999997655332 45664 899999999998742 11 122333322 13
Q ss_pred cccCCceeEEEEec-cCcc
Q 019426 290 FCATSALHITAFVA-CEHV 307 (341)
Q Consensus 290 ~~~~~~~~iilf~n-~d~~ 307 (341)
.|+++.+| +|+.
T Consensus 109 ------~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 109 ------ANLLLALNKMDLA 121 (165)
T ss_dssp ------CCEEEEEECHHHH
T ss_pred ------CCEEEEEEchHhc
Confidence 68899898 9986
No 144
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.01 E-value=0.0063 Score=63.43 Aligned_cols=70 Identities=10% Similarity=0.010 Sum_probs=53.9
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||++|+...+..|..++..++++|+|+|.++.. ...+...|..+... + .
T Consensus 73 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-----------~~~t~~~~~~~~~~----~-------~ 130 (691)
T 1dar_A 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-----------EPQSETVWRQAEKY----K-------V 130 (691)
T ss_dssp EETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred EECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-----------chhhHHHHHHHHHc----C-------C
Confidence 456789999999999888888999999999999999998742 23344555544321 3 7
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 131 p~ivviNKiD~~~ 143 (691)
T 1dar_A 131 PRIAFANKMDKTG 143 (691)
T ss_dssp CEEEEEECTTSTT
T ss_pred CEEEEEECCCccc
Confidence 8899998 99974
No 145
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0093 Score=51.83 Aligned_cols=70 Identities=11% Similarity=0.221 Sum_probs=43.2
Q ss_pred cCCceeEEEecCCccc----------cccccccccCC---ccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426 218 KSGEVYRLFDVGGQRN----------ERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~----------eR~kW~~~f~~---v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~ 284 (341)
..+..+.+||++|... .+..+..++.+ ++++|||+|.++-. . .....+++.+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~--~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL---------T--ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---------C--HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC---------C--HHHHHHHHHHHh--
Confidence 4567899999999532 13334455544 78899999988620 1 112333333322
Q ss_pred cccCccccCCceeEEEEec-cCccCc
Q 019426 285 CFEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 285 ~f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.+ .|+++.+| +|++..
T Consensus 143 --~~-------~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 143 --TG-------KPIHSLLTKCDKLTR 159 (223)
T ss_dssp --GC-------CCEEEEEECGGGSCH
T ss_pred --cC-------CCEEEEEeccccCCh
Confidence 22 67888888 999843
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.96 E-value=0.0085 Score=58.98 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=41.9
Q ss_pred cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.|..+....| ...+..+.+||++|++...+.+..++..++++|+|||.++
T Consensus 81 iTid~~~~~~------~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~ 130 (439)
T 3j2k_7 81 KTVEVGRAYF------ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARK 130 (439)
T ss_pred ceEEEeEEEE------ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence 3444445556 5667899999999999999999999999999999999986
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.95 E-value=0.0062 Score=59.76 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=32.9
Q ss_pred ccCCceeEEEecCCccc---------cccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~---------eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+.+..+.+||.||+.. .+..|..+++++++||||+|.++
T Consensus 45 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~ 93 (439)
T 1mky_A 45 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR 93 (439)
T ss_dssp EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred EECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 45667899999999753 25678889999999999999864
No 148
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.92 E-value=0.017 Score=53.86 Aligned_cols=69 Identities=10% Similarity=0.118 Sum_probs=47.5
Q ss_pred cC-CceeEEEecCCccccc----------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426 218 KS-GEVYRLFDVGGQRNER----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (341)
Q Consensus 218 ~~-~~~~~l~DvgGqr~eR----------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f 286 (341)
.. +..+.+||+.|+...+ ..|..++.+++++|||+|.++-. -.+....|-..+..
T Consensus 55 ~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~-----------~~~~~~~~~~~l~~--- 120 (308)
T 3iev_A 55 IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW-----------RPRDEEIYQNFIKP--- 120 (308)
T ss_dssp ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS-----------CHHHHHHHHHHTGG---
T ss_pred cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-----------CchhHHHHHHHHHh---
Confidence 44 6789999999995443 56677889999999999998631 11223332222222
Q ss_pred cCccccCCceeEEEEec-cCcc
Q 019426 287 EVFFCATSALHITAFVA-CEHV 307 (341)
Q Consensus 287 ~~~~~~~~~~~iilf~n-~d~~ 307 (341)
.+ .|+++++| +|++
T Consensus 121 ~~-------~pvilV~NK~Dl~ 135 (308)
T 3iev_A 121 LN-------KPVIVVINKIDKI 135 (308)
T ss_dssp GC-------CCEEEEEECGGGS
T ss_pred cC-------CCEEEEEECccCC
Confidence 23 68899998 9998
No 149
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.89 E-value=0.0087 Score=59.22 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=36.0
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+....+.+..++..++++|+|+|.++
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 4556789999999999888999999999999999999885
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.0031 Score=53.67 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=16.5
Q ss_pred ceEEeccCCCcchhHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQ 66 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq 66 (341)
-++|+|++||||||++|.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999995
No 151
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.84 E-value=0.0071 Score=59.38 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=36.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+....+.|..++..++++|+|+|.++
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence 5667889999999999999999999999999999999986
No 152
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.83 E-value=0.015 Score=58.07 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=42.6
Q ss_pred ccCCceeEEEecCCccccccc--------cccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~k--------W~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+++..+.+||+.|++..+.. ...++.+++++|||+|.++-.. ...+.+-..+++.+- +
T Consensus 277 ~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l~------~ 343 (476)
T 3gee_A 277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAHP------A 343 (476)
T ss_dssp EETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHCT------T
T ss_pred EECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhcC------C
Confidence 567789999999999765433 3557899999999999997421 112334444444332 3
Q ss_pred ccccCCceeEEEEec-cCccCc
Q 019426 289 FFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++..| +|+...
T Consensus 344 -------~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 344 -------AKFLTVANKLDRAAN 358 (476)
T ss_dssp -------SEEEEEEECTTSCTT
T ss_pred -------CCEEEEEECcCCCCc
Confidence 68888888 999843
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.80 E-value=0.0035 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
++.|+|++||||||++|.+--+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999876443
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.79 E-value=0.0034 Score=53.55 Aligned_cols=23 Identities=48% Similarity=0.439 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++||||||++|.+.-..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999986443
No 155
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=95.79 E-value=0.007 Score=60.08 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=28.2
Q ss_pred ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
..|.++....| ..++..+.+||+.|+....+.+...+..++++|+|+|.++
T Consensus 106 giTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 106 GKTVEVGRAYF------ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR 156 (467)
T ss_dssp -------CCEE------ECSSEEEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred CceEEeeeEEE------ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCc
Confidence 34444444455 5567889999999999888999999999999999999886
No 156
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.75 E-value=0.01 Score=61.93 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=53.7
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+.+..+.+||+.|+......|..++..++++|+|+|.++-. .......+..+... + .
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-----------~~~~~~~~~~~~~~----~-------~ 128 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-----------EPQTETVWRQATTY----G-------V 128 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-----------cHHHHHHHHHHHHc----C-------C
Confidence 456788999999999888888999999999999999998631 23344555544331 3 6
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 129 p~ilviNK~Dl~~ 141 (693)
T 2xex_A 129 PRIVFVNKMDKLG 141 (693)
T ss_dssp CEEEEEECTTSTT
T ss_pred CEEEEEECCCccc
Confidence 8899998 99974
No 157
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0044 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|+|++||||||+++.+.-++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999986554
No 158
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.73 E-value=0.013 Score=53.70 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=45.7
Q ss_pred ccCCceeEEEecCCccccc----------ccccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426 217 KKSGEVYRLFDVGGQRNER----------RKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR----------~kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~ 284 (341)
...+..+.+||++|+...+ ..|.+|+ .+++++|+|+|.++. +..+.+...+...
T Consensus 46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~-------------~~~~~~~~~l~~~- 111 (274)
T 3i8s_A 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL-------------ERNLYLTLQLLEL- 111 (274)
T ss_dssp ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH-------------HHHHHHHHHHHHH-
T ss_pred EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh-------------HHHHHHHHHHHhc-
Confidence 4566789999999987655 2244443 799999999999863 1223333333221
Q ss_pred cccCccccCCceeEEEEec-cCccC
Q 019426 285 CFEVFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 285 ~f~~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+ .|+++.+| +|+..
T Consensus 112 ---~-------~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 112 ---G-------IPCIVALNMLDIAE 126 (274)
T ss_dssp ---T-------CCEEEEEECHHHHH
T ss_pred ---C-------CCEEEEEECccchh
Confidence 3 68888888 99873
No 159
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.72 E-value=0.008 Score=50.58 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=29.5
Q ss_pred ccCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCc
Q 019426 217 KKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdy 257 (341)
.+++..+.+||..|++... +.| .++.+++++|+|+|.++.
T Consensus 48 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 48 HIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTT 96 (172)
T ss_dssp EETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTC
T ss_pred EECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCC
Confidence 3456678999999986421 123 357899999999999874
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.72 E-value=0.0039 Score=53.71 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||+++.+.-++
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999986543
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.0041 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+.-.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999876544
No 162
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.65 E-value=0.0044 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.3
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|++|+|.+|+|||||++++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999754
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.65 E-value=0.0042 Score=53.32 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=32.0
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
+.+.+||.+|++..+..|..++.+++++++|+|+++
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 113 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence 456789999998888899999999999999999886
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.61 E-value=0.0047 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.3
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
+.|+|++||||||+++.+.-++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999987554
No 165
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.60 E-value=0.0054 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=21.9
Q ss_pred cccceEEeccCCCcchhHHHHHHhhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.-..+.|+|++||||||+++.+.-++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999887554
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.54 E-value=0.0086 Score=59.04 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=46.9
Q ss_pred ccCCceeEEEecCC--------ccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 217 KKSGEVYRLFDVGG--------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 217 ~~~~~~~~l~DvgG--------qr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+.+..+.+||.+| +...+..|..+++++++||||+|..+- +...-..+..++.. .+
T Consensus 67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~------------~~~~d~~l~~~l~~---~~ 131 (456)
T 4dcu_A 67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---TK 131 (456)
T ss_dssp TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC------------SCHHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC------------CChHHHHHHHHHHH---cC
Confidence 45677899999999 777788899999999999999996641 11112222233332 23
Q ss_pred ccccCCceeEEEEec-cCccC
Q 019426 289 FFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~ 308 (341)
.|++|.+| +|...
T Consensus 132 -------~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 132 -------KPVVLAVNKLDNTE 145 (456)
T ss_dssp -------SCEEEEEECC----
T ss_pred -------CCEEEEEECccchh
Confidence 68899998 99873
No 167
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.54 E-value=0.015 Score=49.21 Aligned_cols=67 Identities=9% Similarity=0.136 Sum_probs=43.7
Q ss_pred eeEEEecCC----------ccccccccccccCCc---cEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 222 VYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 222 ~~~l~DvgG----------qr~eR~kW~~~f~~v---~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
.+.+||++| +...+..|..++.+. +++|||+|.++... . +...+++.+.. .+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~-~~~~~~~~~~~----~~ 134 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS----------N-DDVQMYEFLKY----YG 134 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC----------H-HHHHHHHHHHH----TT
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC----------H-HHHHHHHHHHH----cC
Confidence 689999999 555566677777665 99999999886211 1 11222332221 22
Q ss_pred ccccCCceeEEEEec-cCccCcc
Q 019426 289 FFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
.|+++.+| +|+....
T Consensus 135 -------~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 135 -------IPVIVIATKADKIPKG 150 (195)
T ss_dssp -------CCEEEEEECGGGSCGG
T ss_pred -------CCEEEEEECcccCChH
Confidence 67888888 9998543
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.54 E-value=0.0051 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+|++|+|++|+|||||++.+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHh
Confidence 35799999999999999999865
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.53 E-value=0.024 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.4
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
..+|++|+|++|+|||||++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l 49 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHH
Confidence 4589999999999999999853
No 170
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.49 E-value=0.017 Score=53.11 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=44.7
Q ss_pred CceeEEEecCCccccc------cccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccc
Q 019426 220 GEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFC 291 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR------~kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~ 291 (341)
+..+.+||++|+.+.+ ..|..|+. +++++|+|+|.++. +..+.+...+.. .+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~-------------e~~~~~~~~l~~----~~--- 107 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL-------------ERNLYLTTQLIE----TG--- 107 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHH----TC---
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch-------------HhHHHHHHHHHh----cC---
Confidence 6789999999997765 34556664 69999999999863 112333334432 13
Q ss_pred cCCceeEEEEec-cCcc
Q 019426 292 ATSALHITAFVA-CEHV 307 (341)
Q Consensus 292 ~~~~~~iilf~n-~d~~ 307 (341)
.|+++.+| +|+.
T Consensus 108 ----~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 108 ----IPVTIALNMIDVL 120 (272)
T ss_dssp ----SCEEEEEECHHHH
T ss_pred ----CCEEEEEEChhhC
Confidence 68888888 9986
No 171
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.46 E-value=0.0052 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.4
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
...+||+++|.+++|||||++++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHT
T ss_pred CcEEEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999986
No 172
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.46 E-value=0.0057 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|+|++||||||+++.+.-..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987654
No 173
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.44 E-value=0.0057 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999886544
No 174
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.43 E-value=0.027 Score=52.57 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=46.9
Q ss_pred cCCceeEEEecCCcccc--------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426 218 KSGEVYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF 289 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~ 289 (341)
..+..+.+||++|+... +..+..++.++++++||+|.++-. ... ...+++.+-.. ..+
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~---------~~~--~~~i~~~l~~~--~~~- 117 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP---------TPE--DELVARALKPL--VGK- 117 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC---------CHH--HHHHHHHHGGG--TTT-
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC---------ChH--HHHHHHHHHhh--cCC-
Confidence 34678999999998753 334556789999999999998631 111 12222333221 112
Q ss_pred cccCCceeEEEEec-cCccCc
Q 019426 290 FCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 290 ~~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++++| +|+...
T Consensus 118 ------~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 118 ------VPILLVGNKLDAAKY 132 (301)
T ss_dssp ------SCEEEEEECGGGCSS
T ss_pred ------CCEEEEEECcccCCc
Confidence 78999999 999843
No 175
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.008 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.1
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
....||+++|.+|+||||+++++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999999763
No 176
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.41 E-value=0.0062 Score=50.04 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.3
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
.+||+++|.+++|||||++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999876
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.40 E-value=0.0058 Score=54.09 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.6
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|+|++||||||+++++-
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999987
No 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.32 E-value=0.0067 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||++|.+.-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999999853
No 179
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.0068 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..|++++|.+|+|||||++++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999864
No 180
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.31 E-value=0.007 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.8
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..|++++|.+++|||||++++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4699999999999999999874
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.31 E-value=0.0076 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.4
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
..+.|+|++||||||++|.+.-++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999876653
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.27 E-value=0.021 Score=59.61 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=49.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+...+.-|..++..++++|+|+|.++-. ...+...+..+.. .+ .|+++
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~----~~-------ip~il 139 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-----------QPQSETVWRQANK----YK-------VPRIA 139 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cC-------CCEEE
Confidence 78999999999877788888999999999999998631 2233445544322 13 68889
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 140 viNKiD~~~ 148 (704)
T 2rdo_7 140 FVNKMDRMG 148 (704)
T ss_pred EEeCCCccc
Confidence 998 99874
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.27 E-value=0.013 Score=53.35 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHH
Q 019426 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 32 ~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~ 67 (341)
.+.+.+++-.+.....++|+++|.+|+|||||++.+
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l 59 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI 59 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444444443333345789999999999999998864
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.25 E-value=0.0069 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999887544
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.24 E-value=0.0076 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+.-.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68899999999999999987554
No 186
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.21 E-value=0.0076 Score=49.82 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=17.8
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
-|+|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.17 E-value=0.008 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++|||||||+|.+--+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999876443
No 188
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.16 E-value=0.0086 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++||||||+++.+.-++
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999886554
No 189
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.16 E-value=0.0087 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.|+|.|++||||||+.+.+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.13 E-value=0.0081 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-++|+|++||||||++|.+.-.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998543
No 191
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.13 E-value=0.0082 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+.+||+++|.+++|||||++++.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999999764
No 192
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.12 E-value=0.016 Score=58.71 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=51.7
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||++|+...+..|..++..++++|+|+|.++ ..+..+++.+..+... + .|++
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~~----~-------vPiI 108 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKDA----H-------VPIV 108 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHTT----T-------CCEE
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHHc----C-------CcEE
Confidence 3467899999999999999999999999999999886 2344555555544432 2 6888
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 109 VViNKiDl~~ 118 (537)
T 3izy_P 109 LAINKCDKAE 118 (537)
T ss_dssp ECCBSGGGTT
T ss_pred EEEecccccc
Confidence 8888 99873
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.11 E-value=0.0081 Score=53.57 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.4
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
--+.|+|++|||||||+|.+.-..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999876554
No 194
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.11 E-value=0.025 Score=56.53 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=46.3
Q ss_pred ccCCceeEEEecCCcc-ccc--------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426 217 KKSGEVYRLFDVGGQR-NER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr-~eR--------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~ 287 (341)
.+++..+.+||+.|++ ... +.+..++.+++++|||+|.++-.. . +..++++.+ .
T Consensus 287 ~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s----------~-~~~~il~~l------~ 349 (482)
T 1xzp_A 287 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD----------E-EDRKILERI------K 349 (482)
T ss_dssp EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC----------H-HHHHHHHHH------T
T ss_pred ecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC----------H-HHHHHHHHh------c
Confidence 4567889999999997 322 234457889999999999986311 1 123333332 2
Q ss_pred CccccCCceeEEEEec-cCccC
Q 019426 288 VFFCATSALHITAFVA-CEHVS 308 (341)
Q Consensus 288 ~~~~~~~~~~iilf~n-~d~~~ 308 (341)
+ .|+++.+| +|+..
T Consensus 350 ~-------~piivV~NK~DL~~ 364 (482)
T 1xzp_A 350 N-------KRYLVVINKVDVVE 364 (482)
T ss_dssp T-------SSEEEEEEECSSCC
T ss_pred C-------CCEEEEEECccccc
Confidence 3 67888888 99974
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.09 E-value=0.016 Score=61.68 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=50.9
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||+.|+...+..|..++..++++|+|+|.++-. ..++...+..+... + .|++
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~~----~-------~p~i 154 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-----------CVQTETVLRQALGE----R-------IKPV 154 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-----------CHHHHHHHHHHHHT----T-------CEEE
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC-----------CHHHHHHHHHHHHc----C-------CCeE
Confidence 567999999999988889999999999999999998632 12334455544321 3 6889
Q ss_pred EEec-cCcc
Q 019426 300 AFVA-CEHV 307 (341)
Q Consensus 300 lf~n-~d~~ 307 (341)
+++| +|+.
T Consensus 155 lviNK~D~~ 163 (842)
T 1n0u_A 155 VVINKVDRA 163 (842)
T ss_dssp EEEECHHHH
T ss_pred EEEECCCcc
Confidence 9998 9986
No 196
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.08 E-value=0.0084 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..++|+|++||||||++|.+.-
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.08 E-value=0.0082 Score=52.38 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-+.|+|++||||||+++++-.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 198
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.06 E-value=0.0094 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.8
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-|+|.|.+||||||+++.+.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999998865
No 199
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.05 E-value=0.0084 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999886544
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.05 E-value=0.0085 Score=55.17 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|+|++||||||+++.+--+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999887554
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.03 E-value=0.012 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||+++.+.-.+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999986554
No 202
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.02 E-value=0.014 Score=58.57 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=49.9
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||++|+...+..|......++++|+|+|.++-- +..+++.+..+.. .+ .
T Consensus 47 ~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~-----------~~qT~e~l~~~~~----~~-------v 104 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-----------MPQTIEAIQHAKA----AQ-------V 104 (501)
T ss_dssp CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS-----------CTTTHHHHHHHHH----TT-------C
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc-----------cHHHHHHHHHHHh----cC-------c
Confidence 445667899999999998999999999999999999987621 1122222222211 23 6
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 105 PiIVviNKiDl~~ 117 (501)
T 1zo1_I 105 PVVVAVNKIDKPE 117 (501)
T ss_dssp CEEEEEECSSSST
T ss_pred eEEEEEEeccccc
Confidence 8899999 99973
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.02 E-value=0.0096 Score=53.83 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=21.8
Q ss_pred hcccceEEeccCCCcchhHHHHHHhhh
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.....++|.|++||||||+++.+.-.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334578999999999999999986433
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.01 E-value=0.022 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+..|++++|.+|+||||++.++-
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Confidence 456899999999999999998764
No 205
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.99 E-value=0.014 Score=58.14 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.+||+.|+....+.+..++..++++|+|+|.++- .+.++.+.+..+-. .+ .
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~----~~-------i 126 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLILDH----FN-------I 126 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHHHH----TT-------C
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHHHH----cC-------C
Confidence 34567899999999988888999999999999999998862 12333333332211 12 5
Q ss_pred eEEEEec-cCccC
Q 019426 297 HITAFVA-CEHVS 308 (341)
Q Consensus 297 ~iilf~n-~d~~~ 308 (341)
|+++++| +|+..
T Consensus 127 p~IvviNK~Dl~~ 139 (482)
T 1wb1_A 127 PIIVVITKSDNAG 139 (482)
T ss_dssp CBCEEEECTTSSC
T ss_pred CEEEEEECCCccc
Confidence 6677778 99984
No 206
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.99 E-value=0.01 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-|+|.|.+||||||+.+.+.-..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999987543
No 207
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.97 E-value=0.021 Score=51.32 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=22.9
Q ss_pred hhcccceEEeccCCCcchhHHHHHHhhh
Q 019426 44 EKHIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 44 ~~~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+...|+|.|+.||||||+.+.+.--+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999986433
No 208
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.97 E-value=0.0098 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.++|+|++||||||+++.+.-.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999987643
No 209
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.96 E-value=0.0097 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.8
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
-.-+.|+|++||||||+++.+.-
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
No 210
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.96 E-value=0.01 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.2
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+.+||+++|.+++|||||++++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999999998653
No 211
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.96 E-value=0.0089 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+.+||+++|.+++|||||++++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999763
No 212
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.95 E-value=0.0099 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.2
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+.+||+++|..++|||||++++.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999998753
No 213
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.93 E-value=0.01 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+.+||+++|..++|||||++.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999998754
No 214
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.91 E-value=0.012 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|.|.|++||||||+++.+.-.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987544
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.91 E-value=0.01 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999987644
No 216
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.90 E-value=0.046 Score=55.94 Aligned_cols=66 Identities=11% Similarity=-0.045 Sum_probs=50.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+...+..|..++..++++|+|+|.++= -+..+.+.+..+.. .+ .|+++
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~-------vPiIV 127 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YR-------TPFVV 127 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TT-------CCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cC-------CeEEE
Confidence 3589999999988888888889999999999999861 23445555543322 23 78999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 128 ViNKiDl~~ 136 (594)
T 1g7s_A 128 AANKIDRIH 136 (594)
T ss_dssp EEECGGGST
T ss_pred Eeccccccc
Confidence 999 99974
No 217
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.88 E-value=0.01 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987544
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.87 E-value=0.011 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.9
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|.+||||||+++.+.-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.87 E-value=0.01 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999886544
No 220
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.86 E-value=0.01 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999886443
No 221
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.011 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
...+||+++|..++|||||++++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHH
Confidence 45689999999999999999875
No 222
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.85 E-value=0.011 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+++|..++|||||++.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999754
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.84 E-value=0.01 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987544
No 224
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.84 E-value=0.011 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=21.3
Q ss_pred hhcccceEEeccCCCcchhHHHHHH
Q 019426 44 EKHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 44 ~~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+..||+++|.+|+|||||++++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456899999999999999999764
No 225
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.84 E-value=0.011 Score=56.43 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=23.2
Q ss_pred ccceEEeccCCCcchhHHHHHHhhhcC
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLFQT 73 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~~~ 73 (341)
.-++.|+|++|||||||+|.+.-++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999998877643
No 226
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.81 E-value=0.012 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=18.5
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+||+++|.+++|||||++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999876
No 227
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.80 E-value=0.011 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999886444
No 228
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.79 E-value=0.011 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999886544
No 229
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.79 E-value=0.011 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987554
No 230
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.034 Score=57.11 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=36.6
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||++|++...+.+..++.+++++|+|||.++
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 4567889999999999999999999999999999999986
No 231
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.78 E-value=0.011 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987554
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.78 E-value=0.012 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-++|.|++||||||+.+.+.-.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999987643
No 233
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.012 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.4
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
++.+||+++|..++|||||++++.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998764
No 234
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.76 E-value=0.012 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.4
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+..||+++|..++|||||++++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999763
No 235
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.75 E-value=0.012 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=18.3
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
+||+++|.+++|||||++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998864
No 236
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.73 E-value=0.012 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.8
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...|++|+|.+++|||||++++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34699999999999999999864
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.73 E-value=0.012 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987554
No 238
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.72 E-value=0.013 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.5
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+.+||+++|.+++|||||++++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999998753
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.70 E-value=0.012 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999987544
No 240
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.69 E-value=0.012 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999886443
No 241
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.69 E-value=0.012 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 242
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.69 E-value=0.03 Score=57.39 Aligned_cols=67 Identities=6% Similarity=0.010 Sum_probs=50.6
Q ss_pred CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT 299 (341)
Q Consensus 220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii 299 (341)
+..+.+||+.|+......|..++..++++|+|+|.++-.+ ..++..+..... .+ .|++
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-----------~qt~~~~~~~~~----~~-------ipiI 127 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-----------AQTLANCYTAME----MD-------LEVV 127 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-----------THHHHHHHHHHH----TT-------CEEE
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CC-------CCEE
Confidence 3678999999998888889999999999999999986321 233444444332 23 6899
Q ss_pred EEec-cCccC
Q 019426 300 AFVA-CEHVS 308 (341)
Q Consensus 300 lf~n-~d~~~ 308 (341)
+++| +|+..
T Consensus 128 vViNKiDl~~ 137 (599)
T 3cb4_D 128 PVLNKIDLPA 137 (599)
T ss_dssp EEEECTTSTT
T ss_pred EeeeccCccc
Confidence 9999 99974
No 243
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.68 E-value=0.013 Score=50.19 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=18.6
Q ss_pred hcccceEEeccCCCcchhHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQ 66 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq 66 (341)
++.+||+++|.+++|||||++.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~ 39 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKV 39 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999884
No 244
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.67 E-value=0.01 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=14.4
Q ss_pred ceEEeccCCCcchhHHHHHH-hhh
Q 019426 49 KLLLLGAGESGKSTIFKQIK-LLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~-~~~ 71 (341)
-+.|+|++||||||+++.+. -++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999886 443
No 245
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.67 E-value=0.012 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999886543
No 246
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.67 E-value=0.013 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
+|.|.|+.||||||+++.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 247
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.63 E-value=0.013 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999886544
No 248
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.63 E-value=0.013 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.7
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
++.+||+++|.+++|||||++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999976
No 249
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.60 E-value=0.013 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999886544
No 250
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.59 E-value=0.013 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987554
No 251
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.58 E-value=0.014 Score=49.10 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=19.7
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
...+||+++|.+++|||||++.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999998644
No 252
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.58 E-value=0.014 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.0
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
+|+|.|+.||||||+++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999843
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.57 E-value=0.014 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|+|++||||||+.+.+.-..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999986443
No 254
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.56 E-value=0.034 Score=45.67 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHh
Q 019426 30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 30 s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
|..+.+.++.-+.......-+||.|+.|+|||++++.+.-
T Consensus 7 s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3444444444344445556799999999999999997643
No 255
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.55 E-value=0.015 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.|+|.|++||||||+.+.+.-.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.55 E-value=0.015 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..|+|.|+.||||||+.+.+.-
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.55 E-value=0.014 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999986554
No 258
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.55 E-value=0.025 Score=53.86 Aligned_cols=74 Identities=5% Similarity=0.054 Sum_probs=45.7
Q ss_pred ceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcccc
Q 019426 221 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCA 292 (341)
Q Consensus 221 ~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~ 292 (341)
..+.+||+.|+.. ....|....+.++++|||+|+++++. .+-+++...+.+.+... +.+.+
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~-------~~~~~~~~~~~~eL~~~~~~l~~---- 274 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG-------RDPYDDYLTINQELSEYNLRLTE---- 274 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC-------CCHHHHHHHHHHHHHHSCSSTTT----
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccc-------cChHHHHHHHHHHHHHhhhhhcC----
Confidence 6899999999632 22333334456999999999997420 12233333344444332 22334
Q ss_pred CCceeEEEEec-cCccC
Q 019426 293 TSALHITAFVA-CEHVS 308 (341)
Q Consensus 293 ~~~~~iilf~n-~d~~~ 308 (341)
.|++|.+| +|++.
T Consensus 275 ---~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 275 ---RPQIIVANKMDMPE 288 (342)
T ss_dssp ---SCBCBEEECTTSTT
T ss_pred ---CCEEEEEECccCCC
Confidence 78888888 99984
No 259
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.54 E-value=0.014 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988644
No 260
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.49 E-value=0.014 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999986544
No 261
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.49 E-value=0.015 Score=49.28 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-++|.|++|+||||+++.+--.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.47 E-value=0.016 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.|+|.|+.||||||+.+.+.-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 263
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.46 E-value=0.04 Score=56.51 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=50.8
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+......|..++..++++|+|+|.++-. ..+++..+..... .+ .|+++
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-----------~~qt~~~~~~a~~----~~-------ipiIv 130 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI-----------EAQTVANFWKAVE----QD-------LVIIP 130 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-----------CHHHHHHHHHHHH----TT-------CEEEE
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-----------cHHHHHHHHHHHH----CC-------CCEEE
Confidence 57889999999888888999999999999999998631 2344555544432 23 68999
Q ss_pred Eec-cCccC
Q 019426 301 FVA-CEHVS 308 (341)
Q Consensus 301 f~n-~d~~~ 308 (341)
++| +|+..
T Consensus 131 viNKiDl~~ 139 (600)
T 2ywe_A 131 VINKIDLPS 139 (600)
T ss_dssp EEECTTSTT
T ss_pred EEeccCccc
Confidence 999 99974
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.46 E-value=0.015 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 265
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.45 E-value=0.016 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|+|++||||||++|.+.-+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999886543
No 266
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.44 E-value=0.016 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=19.1
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
.+.|+|+.||||||+.+.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 267
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.43 E-value=0.015 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999886443
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.41 E-value=0.016 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.9
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
+|+|.|+.||||||+++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 269
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.41 E-value=0.012 Score=50.64 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.3
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
...+++|+|.+|+|||||++.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999999864
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.40 E-value=0.018 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.++|+|++||||||+++.+--++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 368999999999999999886544
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.38 E-value=0.017 Score=48.74 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.0
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|++||||||+.+.+.-.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.34 E-value=0.018 Score=49.21 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.1
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
.|+|.|..||||||+.+.+.-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 273
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.32 E-value=0.016 Score=53.12 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999988643
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.28 E-value=0.018 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|++||||||+.+.+.-.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998643
No 275
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.26 E-value=0.019 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred cceEEeccCCCcchhHHHHHHhhhc
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
.-+.|+|++||||||++|.+.-+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3588999999999999999876653
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.019 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=18.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
++.|+|++||||||+++.+--+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999976533
No 277
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.23 E-value=0.016 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.8
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
-.++|+|+|++|+|||||++.+-
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999853
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.23 E-value=0.028 Score=52.30 Aligned_cols=27 Identities=30% Similarity=0.155 Sum_probs=22.3
Q ss_pred hcccceEEeccCCCcchhHHHHHHhhh
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
++...|.|.|++||||||+++.+.-++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344678999999999999999887555
No 279
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=94.23 E-value=0.083 Score=51.79 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=43.4
Q ss_pred eeEEEecCCccccc-------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCC
Q 019426 222 VYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS 294 (341)
Q Consensus 222 ~~~l~DvgGqr~eR-------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~ 294 (341)
.+.+||+.|+.... .++..++.+++++|+|+|.+. .....+-+ ..+... +
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l---~~l~~~----~------ 140 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVV---NLFKEM----E------ 140 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHH---HHHHHT----T------
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHH---HHHHhc----C------
Confidence 89999999986433 336678999999999999832 11222222 222221 3
Q ss_pred ceeEEEEec-cCccCcc
Q 019426 295 ALHITAFVA-CEHVSGM 310 (341)
Q Consensus 295 ~~~iilf~n-~d~~~~~ 310 (341)
.|+++.+| +|+....
T Consensus 141 -~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 141 -IPFVVVVNKIDVLGEK 156 (423)
T ss_dssp -CCEEEECCCCTTTTCC
T ss_pred -CCEEEEEeCcCCCCcc
Confidence 68899998 9998544
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.22 E-value=0.023 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+.|+|++|||||||++.+--++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 378999999999999999987666
No 281
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.21 E-value=0.019 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+|+|.+++|||||++++.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998753
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.20 E-value=0.019 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.9
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-|+|.|.+||||||+.+.+.-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998643
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.19 E-value=0.021 Score=49.82 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=17.4
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
|+|.||+||||+||++.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 284
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.17 E-value=0.014 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=11.8
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+++|..++|||||++++.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEEECCCCC----------
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998753
No 285
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.15 E-value=0.02 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.0
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
....||+++|..++|||||++++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999975
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.11 E-value=0.022 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.|+|.|..||||||+.+.+.-.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999986543
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.10 E-value=0.021 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|..||||||+.+.+.-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999987643
No 288
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.10 E-value=0.057 Score=52.20 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=49.3
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+....+.+..++..++++|+|+|.++- ..+....+.+..+-. +. ..|+++
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~----------~~~~qt~~~~~~~~~---~~-------~~~iiv 134 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP----------FPQPQTREHFVALGI---IG-------VKNLII 134 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC----------SSCHHHHHHHHHHHH---HT-------CCCEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------CCcHHHHHHHHHHHH---cC-------CCCEEE
Confidence 4689999999999999999999999999999998862 113333333322211 11 157888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|++..
T Consensus 135 viNK~Dl~~~ 144 (403)
T 3sjy_A 135 VQNKVDVVSK 144 (403)
T ss_dssp EEECGGGSCH
T ss_pred EEECccccch
Confidence 888 999743
No 289
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.08 E-value=0.021 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.3
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
+.+||+|||.+++|||+|+.++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~ 33 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRF 33 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHH
Confidence 4579999999999999999875
No 290
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.05 E-value=0.021 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||+++++-.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.05 E-value=0.026 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.2
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
...|+|.|+.||||||+.+.+.-.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999986543
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.03 E-value=0.023 Score=47.20 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
+|+|.|..||||||+.+.+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 293
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.01 E-value=0.019 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.3
Q ss_pred hhcccceEEeccCCCcchhHHHHH
Q 019426 44 EKHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 44 ~~~~~kiLllG~~eSGKST~~kq~ 67 (341)
....+||+++|..++|||||++++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l 49 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRF 49 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHH
Confidence 456789999999999999999975
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.99 E-value=0.016 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999987666
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.97 E-value=0.024 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|.+||||||+.+.+.-.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 296
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.95 E-value=0.021 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|+|++||||||++|.+--+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998743
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.94 E-value=0.024 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.2
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-..|+|.|..||||||+.+.+.-.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999986543
No 298
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.94 E-value=0.021 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999886443
No 299
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.021 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.3
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+++|..++|||||++++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998754
No 300
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.93 E-value=0.022 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
..|.|+|++||||||++|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.90 E-value=0.024 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.1
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|..||||||+++.+.-.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 302
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.90 E-value=0.023 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++|||||||++.+.-.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999875444
No 303
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.86 E-value=0.019 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.6
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
|+|+|+.||||+|.++.+.--|
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999886544
No 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.86 E-value=0.024 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|.|++||||||+++.+.-.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999887543
No 305
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.86 E-value=0.026 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.|+|.|..||||||+.+.+.-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.83 E-value=0.024 Score=51.39 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=17.8
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|.|++||||||+.+++.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36899999999999999875
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.82 E-value=0.025 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+|+|.|+.||||||+++.+.--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986544
No 308
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.82 E-value=0.023 Score=54.54 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|+|++||||||++|.+--+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998643
No 309
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.81 E-value=0.028 Score=47.75 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.5
Q ss_pred cccceEEeccCCCcchhHHHHHHhhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
+...|+|.|..||||||+.+.+.-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999986433
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.79 E-value=0.027 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|+|.|..||||||+.+.+.-.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988654
No 311
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.77 E-value=0.024 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999987443
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.74 E-value=0.026 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.6
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
...+.|.|++||||||+++.+.-
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998753
No 313
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.72 E-value=0.043 Score=60.36 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=36.2
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+....+.+..++..++++|+|+|.++
T Consensus 355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTT
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence 4567899999999999888888889999999999999986
No 314
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.72 E-value=0.026 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
..+||+++|.+++|||||++++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~ 30 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYT 30 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998753
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.70 E-value=0.026 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.7
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
..-++|.|++||||||+++.+.-
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998854
No 316
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.67 E-value=0.025 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999987443
No 317
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.66 E-value=0.029 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
.|+|.|..||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 318
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.66 E-value=0.025 Score=47.64 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=15.3
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..|+|.|..||||||+.+.+.-
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 319
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.66 E-value=0.026 Score=54.36 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|+|++||||||++|.+--+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998644
No 320
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.64 E-value=0.026 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|+|++||||||++|.+--+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998643
No 321
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.64 E-value=0.029 Score=47.36 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.|+|.|..||||||+.+.+.-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.63 E-value=0.031 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.+|+|++||||||+++.+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999876543
No 323
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.63 E-value=0.026 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999987443
No 324
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.62 E-value=0.064 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|+|++||||||+++.+.-+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987654
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.02 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||+++.+--++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887655
No 326
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.61 E-value=0.056 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.5
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
....-+||.|+.|+|||++++.+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 445679999999999999999764
No 327
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.61 E-value=0.03 Score=47.61 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-|.|.|+.||||||+++.+.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988643
No 328
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.60 E-value=0.019 Score=48.08 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=27.0
Q ss_pred eeEEEecCC-----------ccccccccccccCC----ccEEEEEeeccCcc
Q 019426 222 VYRLFDVGG-----------QRNERRKWIHLFEG----VSAVIFCAAISEYD 258 (341)
Q Consensus 222 ~~~l~DvgG-----------qr~eR~kW~~~f~~----v~~IIFvvslSdyd 258 (341)
.+.+||++| +...+..|..++.+ +..+++|+|.+.|+
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~ 96 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP 96 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhh
Confidence 689999999 55566677777654 55777778777653
No 329
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.57 E-value=0.029 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999987554
No 330
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.028 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...+||+|+|.+++|||||++++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999998753
No 331
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.55 E-value=0.029 Score=48.47 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=18.9
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|.|++||||||+++++-.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 332
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.53 E-value=0.043 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.9
Q ss_pred hhcccceEEeccCCCcchhHHHHH
Q 019426 44 EKHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 44 ~~~~~kiLllG~~eSGKST~~kq~ 67 (341)
....++|+|+|.+|+|||||++.+
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSL 57 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHH
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHH
Confidence 345689999999999999999975
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.50 E-value=0.032 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.6
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|.|.|..||||||+++.+.-.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988643
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.48 E-value=0.031 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|.|+.||||||+.+.+.--+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999986443
No 335
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.47 E-value=0.033 Score=46.42 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-|+|.|..||||||+.+.+.-.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998653
No 336
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.43 E-value=0.061 Score=51.60 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=43.9
Q ss_pred cCCceeEEEecCCcccc---------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426 218 KSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~e---------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~ 288 (341)
+.+..+.+||..|+... +..| ..+..++.+++|+|.++-+ ....+.+..+..++..-...+
T Consensus 223 ~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~---------~~~~~~~~~~~~~L~~l~~~~ 292 (364)
T 2qtf_A 223 INNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSE---------NLLIETLQSSFEILREIGVSG 292 (364)
T ss_dssp ETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCH---------HHHHHHHHHHHHHHHHHTCCS
T ss_pred ECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCc---------chHHHHHHHHHHHHHHhCcCC
Confidence 34456788999887322 1222 2467889999999998631 112233333333332111123
Q ss_pred ccccCCceeEEEEec-cCccCcc
Q 019426 289 FFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 289 ~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
.|+++..| +|+++.+
T Consensus 293 -------~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 293 -------KPILVTLNKIDKINGD 308 (364)
T ss_dssp -------CCEEEEEECGGGCCSC
T ss_pred -------CCEEEEEECCCCCCch
Confidence 67788787 9998654
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.43 E-value=0.034 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.1
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
...|+|.|+.||||||+.+.+.-.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999986543
No 338
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.42 E-value=0.076 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.0
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
.+..+++++|.+|+||||++..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHH
Confidence 45679999999999999998865
No 339
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.42 E-value=0.022 Score=54.46 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999987443
No 340
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.41 E-value=0.032 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.9
Q ss_pred ccceEEeccCCCcchhHHHHHHhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
...|.|.|..||||||+.+.+.-.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357899999999999999998765
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.40 E-value=0.032 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..|+|.|..||||||+++.+.-
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 342
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.34 E-value=0.032 Score=47.74 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.1
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..|.|.|..||||||+.+.+.-.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.34 E-value=0.034 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.1
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
...|+|.|..||||||+.+.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 344
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.34 E-value=0.14 Score=49.03 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=8.4
Q ss_pred CceeEEEecCCc
Q 019426 220 GEVYRLFDVGGQ 231 (341)
Q Consensus 220 ~~~~~l~DvgGq 231 (341)
+.-+.++|+...
T Consensus 259 D~il~VvD~s~~ 270 (364)
T 2qtf_A 259 DALILVIDSTFS 270 (364)
T ss_dssp SEEEEEEETTSC
T ss_pred CEEEEEEECCCC
Confidence 456778898654
No 345
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.32 E-value=0.033 Score=48.40 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.6
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
+|++|+++|||||++.|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999999875
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.32 E-value=0.036 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|.|++||||||+++.+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887554
No 347
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.30 E-value=0.021 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-|++.|.+||||||+++.+.-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999987543
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.29 E-value=0.035 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.7
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..|+|.|..||||||+.+.+.-
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 349
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.033 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.0
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...+||+++|..++|||||++++.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~ 34 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHh
Confidence 456899999999999999998753
No 350
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.25 E-value=0.022 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.8
Q ss_pred cccceEEeccCCCcchhHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~ 67 (341)
+..||+++|..++|||||++.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l 49 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVL 49 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 4579999999999999999875
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.036 Score=47.08 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.9
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-|+|.|.+||||||+++.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.20 E-value=0.038 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=20.6
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
--++|+|++||||||+++.+-.++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 368899999999999999887655
No 353
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.19 E-value=0.11 Score=50.20 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=47.9
Q ss_pred ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA 300 (341)
Q Consensus 221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil 300 (341)
..+.+||+.|+....+.+......++++|+|+|.++- -.+.++++.+..+- .+. ..|+++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g----------~~~~qt~e~l~~~~---~l~-------~~~iiv 140 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP----------CPQPQTKEHLMALE---ILG-------IDKIII 140 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC----------SSCHHHHHHHHHHH---HTT-------CCCEEE
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC----------CCCchhHHHHHHHH---HcC-------CCeEEE
Confidence 4689999999988888888888889999999999862 11333333333221 111 257888
Q ss_pred Eec-cCccCc
Q 019426 301 FVA-CEHVSG 309 (341)
Q Consensus 301 f~n-~d~~~~ 309 (341)
++| +|+...
T Consensus 141 v~NK~Dl~~~ 150 (408)
T 1s0u_A 141 VQNKIDLVDE 150 (408)
T ss_dssp EEECTTSSCT
T ss_pred EEEccCCCCH
Confidence 888 999843
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.18 E-value=0.04 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|.|+.||||||+.+.+.-.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999886433
No 355
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.18 E-value=0.034 Score=53.30 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.4
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++++|++||||||+++.+-
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999874
No 356
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.16 E-value=0.022 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-+.|+|++||||||++|.+--+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998643
No 357
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.13 E-value=0.035 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.6
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+.+||+|+|.+++|||||++++-
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999874
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.13 E-value=0.044 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.|+|+|+.||||+|.++.+.--|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887555
No 359
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.10 E-value=0.037 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||+++++-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999875
No 360
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.08 E-value=0.036 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.1
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
.++|+|+|++|+|||||++.+--
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999998753
No 361
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.08 E-value=0.038 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.1
Q ss_pred hcccceEEeccCCCcchhHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~ 67 (341)
...+||+|+|.+++|||||++.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999999875
No 362
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.08 E-value=0.035 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.5
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++||||||++|.+--+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998644
No 363
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.01 E-value=0.041 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
.-|.|.|..||||||+++.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.00 E-value=0.042 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.5
Q ss_pred cccceEEeccCCCcchhHHHHHHh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
+...|.|.|+.||||||+.+.+.-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998765
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.99 E-value=0.043 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.++|+|++||||||+++.+--++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999987555
No 366
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.96 E-value=0.038 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++|||||||++++-...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987543
No 367
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.95 E-value=0.04 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.1
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..||+|+|.+++|||||++++-
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999975
No 368
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.95 E-value=0.065 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.7
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
..-|+|.|..||||||+++.+.-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.93 E-value=0.041 Score=45.78 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.1
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++|+||||+++.+--.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999987543
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.93 E-value=0.045 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.++|+|++||||||+++.+--++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999987655
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.90 E-value=0.044 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.|+|.|+.||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999886433
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.87 E-value=0.043 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.4
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
.-|+|.|.+||||||+++.+.-
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 373
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.87 E-value=0.041 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.++.|+|++|||||||++.+-
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 359999999999999999874
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.84 E-value=0.035 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-+.|.|+.||||||+++.+.-.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999987654
No 375
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.83 E-value=0.088 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
--++|.|++|+||||+++.+--.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988643
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.80 E-value=0.043 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.++|+|++|+||||++|.+.-.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999988643
No 377
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.76 E-value=0.044 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++|+|++|+||||+++.+--..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999886543
No 378
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.041 Score=54.54 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=21.5
Q ss_pred cccceEEeccCCCcchhHHHHHHhhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.--.++|+|++||||||++|.+--+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33489999999999999999886443
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.72 E-value=0.052 Score=47.51 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=20.7
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|+|.|..||||||+.+.+.-.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999986543
No 380
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.69 E-value=0.044 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++|||||||++++-..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998743
No 381
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.68 E-value=0.06 Score=44.61 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.4
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-++|.|+.|+||||+++.+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 458999999999999998764
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.67 E-value=0.049 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.6
Q ss_pred hcccceEEeccCCCcchhHHHHHHhhh
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+..-|.|.|..||||||+.+.+.-.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999987653
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.60 E-value=0.053 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++||||||+++.+--++
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999887554
No 384
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=92.54 E-value=0.024 Score=57.97 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+....+.+..++..++++|+|||.++
T Consensus 251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 5566789999999999999999999999999999999985
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.50 E-value=0.056 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++|+|++||||||+++.+--++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999886544
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.45 E-value=0.053 Score=49.66 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.8
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 387
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.41 E-value=0.18 Score=52.17 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=50.8
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
...+..+.+||..|+...+..|..++..++++++|+|.++-. ......++..+... + .
T Consensus 70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-----------~~qt~~~~~~~~~~----~-------i 127 (665)
T 2dy1_A 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-----------QVGTERAWTVAERL----G-------L 127 (665)
T ss_dssp EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-----------chhHHHHHHHHHHc----c-------C
Confidence 345678999999999888888999999999999999976521 12233444444321 3 6
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++++| +|+.
T Consensus 128 p~ilv~NKiD~~ 139 (665)
T 2dy1_A 128 PRMVVVTKLDKG 139 (665)
T ss_dssp CEEEEEECGGGC
T ss_pred CEEEEecCCchh
Confidence 7888998 9986
No 388
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.31 E-value=0.055 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
-.|.|+|.+||||||+.+.+.-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 389
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.30 E-value=0.052 Score=53.17 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||+++.+--
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998753
No 390
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.20 E-value=0.066 Score=44.41 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.5
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
..-++|.|+.|+||||+++.+.-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998753
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.17 E-value=0.06 Score=48.55 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred ccceEEeccCCCcchhHHHHHHhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
...+.|.|++||||||+++.+.-.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988643
No 392
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.12 E-value=0.065 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.|.|.|+.||||||+.+.+.-..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999986543
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.07 E-value=0.06 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++|+|++|+||||+++.+--..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999886544
No 394
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.99 E-value=0.07 Score=44.32 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.9
Q ss_pred eEEeccCCCcchhHHHHHH
Q 019426 50 LLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~ 68 (341)
.+|+|++||||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999988765
No 395
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.96 E-value=0.06 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++.|+|++|+||||++++|--+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999987554
No 396
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.95 E-value=0.13 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.0
Q ss_pred cccceEEeccCCCcchhHHHHHHhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
...-+.|+|++||||||+++.+.-+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3447899999999999999988654
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.93 E-value=0.064 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.5
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
--++|+|..||||||++|.+--.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999998744
No 398
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.90 E-value=0.072 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.-++|+|++||||||+++.+--++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999886544
No 399
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.90 E-value=0.064 Score=49.82 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.++|++||||||+++.+.-+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999886443
No 400
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.85 E-value=0.065 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.++|++|+||||+++.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999988 54
No 401
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.85 E-value=0.065 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.0
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.++|+++|..++|||||++++-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999874
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.84 E-value=0.072 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.2
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-..|+|.|..||||||+.+.+.-.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999986544
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.81 E-value=0.071 Score=49.02 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..|.|.|+.||||||+.+.+.-
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 404
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.73 E-value=0.063 Score=53.79 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.6
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
-++|+|++|||||||++++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999994
No 405
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.71 E-value=0.068 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.||+|+|.+++|||||++++-
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999874
No 406
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.69 E-value=0.074 Score=45.66 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-+++.|.+||||||+++.+-
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999988753
No 407
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.69 E-value=0.068 Score=54.33 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 689999999999999999876653
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.68 E-value=0.076 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++||||||+++.|-.++
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 58899999999999999876543
No 409
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.66 E-value=0.068 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999876663
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.60 E-value=0.068 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999987554
No 411
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.56 E-value=0.074 Score=49.46 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.2
Q ss_pred ccceEEeccCCCcchhHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~ 67 (341)
..||+|+|.+++|||||++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l 23 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSII 23 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 469999999999999999985
No 412
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.54 E-value=0.077 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.9
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...-++|.|+.|+||||+++.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999875
No 413
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.47 E-value=0.085 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++||||||+++.+--++
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 58899999999999999886554
No 414
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.45 E-value=0.18 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred hhcccceEEeccCCCcchhHHHHH
Q 019426 44 EKHIQKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 44 ~~~~~kiLllG~~eSGKST~~kq~ 67 (341)
.+..+||+|+|.+++|||||++.+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L 253 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTL 253 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHH
Confidence 456689999999999999999975
No 415
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.42 E-value=0.073 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--++
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999987665
No 416
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.39 E-value=0.073 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++.|+|++||||||+++.+--+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999987554
No 417
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.36 E-value=0.075 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||++|.+--++
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999987554
No 418
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.36 E-value=0.087 Score=51.77 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=45.7
Q ss_pred ccCCceeEEEecCCcc----------cccccc-ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 217 KKSGEVYRLFDVGGQR----------NERRKW-IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr----------~eR~kW-~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
...+..+.+||..|.+ ..+..+ ..+++.++++|+|+|.++-- ......+...+..
T Consensus 239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~-----------~~~~~~~~~~~~~--- 304 (456)
T 4dcu_A 239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-----------IEQDKRIAGYAHE--- 304 (456)
T ss_dssp EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-----------CHHHHHHHHHHHH---
T ss_pred EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc-----------CHHHHHHHHHHHH---
Confidence 4566789999999943 333333 34678899999999988610 1222333333332
Q ss_pred ccCccccCCceeEEEEec-cCccCc
Q 019426 286 FEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.+ .|++|.+| +|+..+
T Consensus 305 -~~-------~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 305 -AG-------KAVVIVVNKWDAVDK 321 (456)
T ss_dssp -TT-------CEEEEEEECGGGSCC
T ss_pred -cC-------CCEEEEEEChhcCCC
Confidence 23 78888898 999843
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.34 E-value=0.081 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.2
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
..+||.|++|+||||+++.+.-
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998753
No 420
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.34 E-value=0.081 Score=50.32 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=26.0
Q ss_pred CCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE 256 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd 256 (341)
.+..+.++|..|-+ ..+....+.++.++||+|.+.
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~ 199 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAG 199 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCc
Confidence 46678999998853 235566788999999999876
No 421
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.30 E-value=0.081 Score=46.40 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.7
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|.|++||||||++.|+-
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999988874
No 422
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.30 E-value=0.26 Score=44.72 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=43.4
Q ss_pred CceeEEEecCCccc-------------cccccccccCCccEEE-EEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 220 GEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVI-FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 220 ~~~~~l~DvgGqr~-------------eR~kW~~~f~~v~~II-FvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
...+.+||+.|+.. .+..+..|+.+.+++| ||+|.++-- . -.+.+.+.+.+-.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~---------~-~~~~~~~~~~~~~--- 190 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL---------A-NSDALKIAKEVDP--- 190 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG---------G-GCHHHHHHHHHCT---
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch---------h-hhHHHHHHHHhCC---
Confidence 46899999999742 2345667888888766 899887510 0 1122334444322
Q ss_pred ccCccccCCceeEEEEec-cCccCcc
Q 019426 286 FEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
.+ .|+++.+| +|++...
T Consensus 191 -~~-------~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 191 -QG-------QRTIGVITKLDLMDEG 208 (299)
T ss_dssp -TC-------SSEEEEEECGGGSCTT
T ss_pred -CC-------CeEEEEEEccccCCCC
Confidence 12 57777777 9998554
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.29 E-value=0.1 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+.|+|++||||||+++.+--+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999987654
No 424
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.26 E-value=0.078 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
++.|+|++||||||++|.+--++.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Confidence 689999999999999999876663
No 425
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.12 E-value=0.18 Score=46.25 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCceeEEEecCCccc-------------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 219 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 219 ~~~~~~l~DvgGqr~-------------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
.+..+.+||+.|... .+..+..++.+++++|||+|.+.-+. .+. +.+.+.+.+-.
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~~--~~~~i~~~~~~--- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANS--DALQLAKEVDP--- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TTC--SHHHHHHHHCS---
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hhh--HHHHHHHHhCC---
Confidence 346899999999853 34456678889999999999864221 011 11233333322
Q ss_pred ccCccccCCceeEEEEec-cCccCcc
Q 019426 286 FEVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
.+ .|+++.+| +|++...
T Consensus 197 -~~-------~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 197 -EG-------KRTIGVITKLDLMDKG 214 (315)
T ss_dssp -SC-------SSEEEEEECTTSSCSS
T ss_pred -CC-------CcEEEEEcCcccCCcc
Confidence 12 67788887 9998544
No 426
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.03 E-value=0.1 Score=51.01 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=46.2
Q ss_pred ccCCceeEEEecCCcccccc----------cc-ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426 217 KKSGEVYRLFDVGGQRNERR----------KW-IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~----------kW-~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~ 285 (341)
.+.+..+.+||..|++...+ .+ ..++++++++|+|+|.++-. ..+.+.++..+..
T Consensus 219 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~-----------s~~~~~~~~~~~~--- 284 (436)
T 2hjg_A 219 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-----------IEQDKRIAGYAHE--- 284 (436)
T ss_dssp EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-----------CHHHHHHHHHHHH---
T ss_pred EECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC-----------cHHHHHHHHHHHH---
Confidence 45677899999999854221 11 24677899999999998621 1122334444432
Q ss_pred ccCccccCCceeEEEEec-cCccCc
Q 019426 286 FEVFFCATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 286 f~~~~~~~~~~~iilf~n-~d~~~~ 309 (341)
.+ .|+++.+| +|++.+
T Consensus 285 -~~-------~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 285 -AG-------KAVVIVVNKWDAVDK 301 (436)
T ss_dssp -TT-------CEEEEEEECGGGSCC
T ss_pred -cC-------CcEEEEEECccCCCc
Confidence 12 68888888 999854
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.02 E-value=0.08 Score=49.04 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=16.7
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
.-|.|-|++||||||+.+.+.-.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999988753
No 428
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.99 E-value=0.98 Score=40.65 Aligned_cols=40 Identities=8% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccCCceeEEEecCCcccccc-------ccccc--cCCccEEEEEeeccC
Q 019426 217 KKSGEVYRLFDVGGQRNERR-------KWIHL--FEGVSAVIFCAAISE 256 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~-------kW~~~--f~~v~~IIFvvslSd 256 (341)
...+..+.+||+.|+..... .+..| ..+++++|||+|++.
T Consensus 83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA 131 (270)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCC
Confidence 45678899999999854321 22222 347999999998865
No 429
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.95 E-value=0.099 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.5
Q ss_pred ccceEEeccCCCcchhHHHHHHhhh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-.-|++.|+.||||||+++.+.-.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999876443
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.85 E-value=0.1 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.7
Q ss_pred cccceEEeccCCCcchhHHHHHHh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
+...|.|.|+.||||||+.+.+.-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998874
No 431
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=90.84 E-value=0.096 Score=47.15 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred hcccceEEeccC---------CCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAG---------ESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~---------eSGKST~~kq~~ 68 (341)
...+||+++|.+ ++|||||++++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFV 49 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHH
Confidence 345899999999 999999999864
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.091 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999987554
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.79 E-value=0.093 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++|+|++|||||||++|+-...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 434
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.78 E-value=0.096 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+...+.|+|++||||||+++.+-
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999764
No 435
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.71 E-value=0.074 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
.+.|+|++||||||++|.+--++.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 688999999999999998876653
No 436
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.67 E-value=0.18 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++++|+.||||||+++.+--+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999876443
No 437
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.67 E-value=0.11 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++||||||++|++-.+
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 4789999999999999999754
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.67 E-value=0.099 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++|+|||||++.+.-.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999988643
No 439
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.63 E-value=0.26 Score=42.08 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-++|.|++|+||||+++.+-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998765
No 440
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.63 E-value=0.22 Score=44.60 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.0
Q ss_pred hcccceEEeccCCCcchhHHHHHHh
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
....-+||.|+.|+|||++++.+.-
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3446799999999999999998754
No 441
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.57 E-value=0.098 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999987544
No 442
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.55 E-value=0.1 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
.+|+.|+|.+|+|||||++.+-
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999864
No 443
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.55 E-value=0.37 Score=43.83 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.8
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-+||.|+.|+||||+++.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999998664
No 444
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=90.48 E-value=0.11 Score=55.01 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++||||||++|++-.+
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999999764
No 445
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.45 E-value=0.11 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++||||||++|++.++
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5789999999999999999655
No 446
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.38 E-value=0.2 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.8
Q ss_pred cccceEEeccCCCcchhHHHHHHhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
...-+||.|+.|+||||+++.+.-.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999988533
No 447
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.33 E-value=0.047 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.9
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
++|+|++||||||+++.+.-+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999887554
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.28 E-value=0.11 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.4
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-|+|.|.+||||||+++++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999875
No 449
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.25 E-value=0.12 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=17.5
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
..+.+.|++||||||++..+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999987654
No 450
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.13 Score=43.64 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=18.1
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
.++|.|++|+||||+++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999874
No 451
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.06 E-value=0.12 Score=55.51 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.3
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|+|++||||||++|++.
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999984
No 452
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.99 E-value=0.28 Score=41.82 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.0
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|.|++|+||||+++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999875
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.99 E-value=0.12 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-++|+|++||||||+++.+.-.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999987643
No 454
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.98 E-value=0.067 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.8
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
..+.|+|++|+|||||++.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 368999999999999999875
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.97 E-value=0.13 Score=46.83 Aligned_cols=23 Identities=17% Similarity=0.536 Sum_probs=20.3
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...||+++|..++|||||+..+-
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHH
Confidence 45699999999999999999864
No 456
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.85 E-value=0.11 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 689999999999999998876653
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.75 E-value=0.13 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.4
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++||||||++|.+--+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999986443
No 458
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.71 E-value=0.11 Score=55.90 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.8
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-++|+|++||||||++|++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 478999999999999999864
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.69 E-value=0.13 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
.+.|+|++|||||||+|.+--+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998643
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.68 E-value=0.16 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~ 70 (341)
-.+|+|++||||||++..+...
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999987743
No 461
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.54 E-value=0.15 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.9
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
..-+||.|++|+||||+++.+.-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34799999999999999998763
No 462
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.44 E-value=0.16 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.++++|++|+||||+++.+-..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999876544
No 463
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.43 E-value=0.15 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+..+++|+|.+++|||||++++-
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999874
No 464
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.41 E-value=0.28 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.6
Q ss_pred ccceEEeccCCCcchhHHHHHH
Q 019426 47 IQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~ 68 (341)
..-+||.|+.|+||||+++.+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999875
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.40 E-value=0.14 Score=48.85 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.0
Q ss_pred eEEeccCCCcchhHHHHHHh
Q 019426 50 LLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~ 69 (341)
.+|+|++||||||++..+-.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998874
No 466
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.36 E-value=0.15 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.6
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
....+|+|+|..||||||+.+++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999985
No 467
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.35 E-value=0.15 Score=45.94 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.1
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.-+||.|++|+||||+++.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 459999999999999999885
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.33 E-value=0.14 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
.+.|+|++|||||||+|.+--+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999986443
No 469
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.15 E-value=0.13 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.4
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..+.|+|++||||||+++.+--+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999876443
No 470
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.13 E-value=0.15 Score=49.58 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.0
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
-++|+|++|||||||++|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 38899999999999999875
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.09 E-value=0.23 Score=47.10 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=26.6
Q ss_pred cCCceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY 257 (341)
Q Consensus 218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy 257 (341)
..+..+.++|..|-+. -.......++.+|||+|.+..
T Consensus 169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~ 205 (355)
T 3p32_A 169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTG 205 (355)
T ss_dssp HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTT
T ss_pred hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCC
Confidence 3567889999999533 233345789999999997653
No 472
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.98 E-value=0.17 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-+||.|++|+||||+++.+.-..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCcCHHHHHHHHHHHh
Confidence 59999999999999999876443
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.96 E-value=0.16 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.3
Q ss_pred eEEeccCCCcchhHHHHHHhhh
Q 019426 50 LLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 50 iLllG~~eSGKST~~kq~~~~~ 71 (341)
+.|+|++|||||||+|.+--+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999987554
No 474
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.96 E-value=0.17 Score=44.85 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
.-+||.|++|+||||+++.+.-
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998753
No 475
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.76 E-value=0.2 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.6
Q ss_pred ceEEeccCCCcchhHHHHHHhhh
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~ 71 (341)
-++++|++||||||+++.+-..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 48899999999999999886544
No 476
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.73 E-value=0.13 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.0
Q ss_pred cceEEeccCCCcchhHHHHHHhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~ 70 (341)
..+.|+|.+||||||++|.+.-.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 46899999999999999998643
No 477
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.71 E-value=0.16 Score=47.36 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.0
Q ss_pred ceEEeccCCCcchhHHHHHHh-hh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL-LF 71 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~-~~ 71 (341)
.+++.|++|+||||+++.+.- ++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 399999999999999998865 44
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.58 E-value=0.37 Score=43.32 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.6
Q ss_pred ccceEEeccCCCcchhHHHHHHh
Q 019426 47 IQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 47 ~~kiLllG~~eSGKST~~kq~~~ 69 (341)
..-+||.|+.|+||||+++.+.-
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999998753
No 479
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.52 E-value=0.1 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.0
Q ss_pred ceEEeccCCCcchhHHHHHHhhhc
Q 019426 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~~~~ 72 (341)
.+.|+|++||||||+++.+..+..
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999876653
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.49 E-value=0.18 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=18.2
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-|+|.|++||||||+.+.+.-
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999999987753
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.46 E-value=0.16 Score=45.81 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=20.9
Q ss_pred cccceEEeccCCCcchhHHHHHHhh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~~ 70 (341)
+..-|++.|..||||||+++.+.-.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999987643
No 482
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.44 E-value=0.19 Score=46.47 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=19.4
Q ss_pred cceEEeccCCCcchhHHHHHHh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~ 69 (341)
.-++|.|++|+||||+++.+.-
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998753
No 483
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=88.44 E-value=0.18 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.9
Q ss_pred cccceEEeccCCCcchhHHHHHHh
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
...++.|+|.+++||||+++.+--
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999998864
No 484
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=88.40 E-value=0.38 Score=50.01 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=44.9
Q ss_pred ceeEEEecCCccc---cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426 221 EVYRLFDVGGQRN---ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH 297 (341)
Q Consensus 221 ~~~~l~DvgGqr~---eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ 297 (341)
..+.+||+.|... ....+..++.++++||||+|.+.-. -...+..+...+... + .|
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-----------s~~e~~~l~~~l~~~---~-------~~ 232 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-----------TLGERRYLENYIKGR---G-------LT 232 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-----------CHHHHHHHHHHTTTS---C-------CC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-----------chhHHHHHHHHHHhh---C-------CC
Confidence 4699999999754 3456778899999999999987521 112233444333311 2 56
Q ss_pred EEEEec-cCccC
Q 019426 298 ITAFVA-CEHVS 308 (341)
Q Consensus 298 iilf~n-~d~~~ 308 (341)
+++.+| +|++.
T Consensus 233 iiiVlNK~Dl~~ 244 (695)
T 2j69_A 233 VFFLVNAWDQVR 244 (695)
T ss_dssp EEEEEECGGGGG
T ss_pred EEEEEECccccc
Confidence 788888 99874
No 485
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=88.38 E-value=0.2 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
.++.|+|.+++|||||++.+-
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~ 22 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALT 22 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999998764
No 486
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.37 E-value=0.36 Score=44.70 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHhhcccceEEeccCCCcchhHHHHHHh
Q 019426 42 KAEKHIQKLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 42 ~~~~~~~kiLllG~~eSGKST~~kq~~~ 69 (341)
+......-+||.|++|+|||++++.+.-
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3334556899999999999999998764
No 487
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.34 E-value=0.19 Score=47.59 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=46.3
Q ss_pred CceeEEEecCCcccc-------------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426 220 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (341)
Q Consensus 220 ~~~~~l~DvgGqr~e-------------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f 286 (341)
...+.+||+.|+... +.....|+.++++||+|++.+.-+. .+ .+.+.+...+...
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-------~~--~~~~~l~~~~~~~--- 202 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-------AT--SDAIKISREVDPS--- 202 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-------GG--CHHHHHHHHSCTT---
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-------CC--HHHHHHHHHhccc---
Confidence 457999999998654 4556678899999999998765321 11 3345555554321
Q ss_pred cCccccCCceeEEEEec-cCccCcc
Q 019426 287 EVFFCATSALHITAFVA-CEHVSGM 310 (341)
Q Consensus 287 ~~~~~~~~~~~iilf~n-~d~~~~~ 310 (341)
+ .|+++.+| +|++..+
T Consensus 203 -~-------~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 203 -G-------DRTFGVLTKIDLMDKG 219 (360)
T ss_dssp -C-------TTEEEEEECGGGCCTT
T ss_pred -C-------CCEEEEEeCCccCCCc
Confidence 2 35666666 9998543
No 488
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.24 E-value=0.15 Score=52.69 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=16.7
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
.+.|+|++||||||+++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4789999999999999754
No 489
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=88.20 E-value=0.2 Score=47.48 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=17.1
Q ss_pred ceEEeccCCCcchhHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~ 67 (341)
||+|+|.+|+|||++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~ 19 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVV 19 (331)
T ss_dssp CEEEECSTTSSTTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 7999999999999999753
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.17 E-value=0.22 Score=43.11 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.5
Q ss_pred cceEEeccCCCcchhHHHHHHhhh
Q 019426 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~~~~ 71 (341)
..|.|.|+.||||||+.+.+.-.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999886543
No 491
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.13 E-value=0.19 Score=54.37 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=18.1
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
.+.|+|++|||||||+|.+-
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999885
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.01 E-value=0.22 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.0
Q ss_pred cceEEeccCCCcchhHHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~~ 68 (341)
..++|.|++||||||++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999987653
No 493
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=87.95 E-value=0.66 Score=46.82 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=52.7
Q ss_pred ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296 (341)
Q Consensus 217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~ 296 (341)
.+++..+.++|..|.-..---=.....-+|+.|.|||..+ --+..+..+|+...... .
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~~~-----------l 153 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRMRA-----------T 153 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHHTT-----------C
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHHhC-----------C
Confidence 6888999999999975432222223446899999999886 56778888888776543 7
Q ss_pred eEEEEec-cCcc
Q 019426 297 HITAFVA-CEHV 307 (341)
Q Consensus 297 ~iilf~n-~d~~ 307 (341)
|+++|.| +|..
T Consensus 154 p~i~fINK~Dr~ 165 (548)
T 3vqt_A 154 PVMTFVNKMDRE 165 (548)
T ss_dssp CEEEEEECTTSC
T ss_pred ceEEEEecccch
Confidence 8999999 9985
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.91 E-value=0.22 Score=45.39 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred ceEEeccCCCcchhHHHHHHh
Q 019426 49 KLLLLGAGESGKSTIFKQIKL 69 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~~ 69 (341)
-+||.|+.|+||||+++.+.-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999998753
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.84 E-value=0.23 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.3
Q ss_pred cceEEeccCCCcchhHHHHH
Q 019426 48 QKLLLLGAGESGKSTIFKQI 67 (341)
Q Consensus 48 ~kiLllG~~eSGKST~~kq~ 67 (341)
.-+|+.|.+|+||||++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999997754
No 496
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=87.75 E-value=0.41 Score=48.39 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=43.5
Q ss_pred eeEEEecCCccc-----------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCcc
Q 019426 222 VYRLFDVGGQRN-----------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFF 290 (341)
Q Consensus 222 ~~~l~DvgGqr~-----------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~ 290 (341)
.+.+||+.|... .+..|..++.++++||||+|.+..+ -..+....++.+... +
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~----------~~~~~~~~l~~l~~~----~-- 218 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE----------ISDEFSEAIGALRGH----E-- 218 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC----------CCHHHHHHHHHTTTC----G--
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC----------CCHHHHHHHHHHHhc----C--
Confidence 578999999854 1244556778899999999997632 112233344443221 1
Q ss_pred ccCCceeEEEEec-cCccCc
Q 019426 291 CATSALHITAFVA-CEHVSG 309 (341)
Q Consensus 291 ~~~~~~~iilf~n-~d~~~~ 309 (341)
.|+++.+| +|++..
T Consensus 219 -----~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 -----DKIRVVLNKADMVET 233 (550)
T ss_dssp -----GGEEEEEECGGGSCH
T ss_pred -----CCEEEEEECCCccCH
Confidence 56788888 999843
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.73 E-value=0.22 Score=47.09 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.0
Q ss_pred ceEEeccCCCcchhHHHHHH
Q 019426 49 KLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 49 kiLllG~~eSGKST~~kq~~ 68 (341)
.|+|.|+.||||||+.+.+.
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998875
No 498
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.69 E-value=0.54 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.0
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...+|+++|..+|||||+++.+-
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHh
Confidence 34599999999999999999864
No 499
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=87.54 E-value=0.34 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=20.9
Q ss_pred hcccceEEeccCCCcchhHHHHHH
Q 019426 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 45 ~~~~kiLllG~~eSGKST~~kq~~ 68 (341)
+..+||+|+|..++|||||++.+.
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~ 264 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLL 264 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHH
Confidence 455899999999999999999764
No 500
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.52 E-value=0.24 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=20.1
Q ss_pred cccceEEeccCCCcchhHHHHHH
Q 019426 46 HIQKLLLLGAGESGKSTIFKQIK 68 (341)
Q Consensus 46 ~~~kiLllG~~eSGKST~~kq~~ 68 (341)
...+|+++|..++|||||+..+-
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999999763
Done!