Query 019428
Match_columns 341
No_of_seqs 229 out of 1928
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1582 UDP-galactose transpor 100.0 3.1E-39 6.7E-44 282.5 22.0 318 18-341 38-367 (367)
2 PF08449 UAA: UAA transporter 100.0 1E-36 2.2E-41 284.8 32.7 283 23-308 8-302 (303)
3 KOG1580 UDP-galactose transpor 100.0 4.3E-36 9.3E-41 258.0 17.7 292 6-306 2-316 (337)
4 KOG1581 UDP-galactose transpor 100.0 2.9E-34 6.4E-39 255.8 25.1 285 21-308 12-318 (327)
5 TIGR00817 tpt Tpt phosphate/ph 100.0 3E-31 6.6E-36 247.8 30.2 279 24-310 10-300 (302)
6 PTZ00343 triose or hexose phos 100.0 2.4E-30 5.1E-35 246.2 32.4 278 22-305 48-350 (350)
7 KOG1441 Glucose-6-phosphate/ph 100.0 3.7E-33 8E-38 257.1 6.8 268 37-311 39-315 (316)
8 PF06027 DUF914: Eukaryotic pr 100.0 2E-27 4.2E-32 221.8 27.4 279 22-310 21-312 (334)
9 KOG1444 Nucleotide-sugar trans 100.0 6.8E-27 1.5E-31 211.3 22.8 289 17-313 13-310 (314)
10 KOG1443 Predicted integral mem 100.0 1.6E-27 3.5E-32 212.6 17.8 288 41-337 40-346 (349)
11 KOG1583 UDP-N-acetylglucosamin 100.0 3.9E-28 8.4E-33 213.6 11.0 281 22-309 10-320 (330)
12 PLN00411 nodulin MtN21 family 99.9 4.1E-24 8.9E-29 203.1 30.0 282 21-308 14-333 (358)
13 PRK11689 aromatic amino acid e 99.9 1.4E-22 3.1E-27 188.7 29.2 275 18-305 2-289 (295)
14 PRK11453 O-acetylserine/cystei 99.9 7.1E-22 1.5E-26 184.4 33.2 278 23-306 7-290 (299)
15 TIGR00950 2A78 Carboxylate/Ami 99.9 2.4E-21 5.2E-26 176.7 26.4 241 44-298 16-259 (260)
16 PRK11272 putative DMT superfam 99.9 9.6E-21 2.1E-25 176.2 29.6 268 25-306 13-288 (292)
17 PRK10532 threonine and homoser 99.9 1.1E-20 2.3E-25 176.0 29.1 275 13-307 6-285 (293)
18 KOG1442 GDP-fucose transporter 99.9 8E-25 1.7E-29 192.4 -0.2 293 23-319 35-343 (347)
19 PRK15430 putative chlorampheni 99.9 8.8E-21 1.9E-25 176.7 26.9 270 19-305 7-287 (296)
20 COG5070 VRG4 Nucleotide-sugar 99.9 1.8E-21 3.9E-26 166.7 14.6 273 37-313 28-306 (309)
21 TIGR03340 phn_DUF6 phosphonate 99.8 1.7E-18 3.8E-23 160.1 24.5 209 82-300 70-280 (281)
22 COG0697 RhaT Permeases of the 99.8 9E-16 2E-20 141.3 29.4 214 77-304 71-288 (292)
23 PF04142 Nuc_sug_transp: Nucle 99.8 8.3E-17 1.8E-21 145.3 19.3 214 74-294 16-244 (244)
24 TIGR00688 rarD rarD protein. T 99.7 1.6E-15 3.5E-20 138.4 25.7 240 20-278 2-255 (256)
25 PF03151 TPT: Triose-phosphate 99.7 1.5E-16 3.2E-21 133.6 16.8 142 162-303 1-153 (153)
26 KOG2234 Predicted UDP-galactos 99.7 1.5E-15 3.2E-20 139.9 23.4 226 76-308 93-327 (345)
27 TIGR00776 RhaT RhaT L-rhamnose 99.7 6.4E-14 1.4E-18 130.2 27.5 263 22-305 3-290 (290)
28 KOG2765 Predicted membrane pro 99.7 1E-15 2.2E-20 140.9 12.9 218 84-305 168-392 (416)
29 COG2962 RarD Predicted permeas 99.7 1.6E-13 3.4E-18 123.3 26.4 277 17-311 4-291 (293)
30 KOG3912 Predicted integral mem 99.7 1.9E-14 4.2E-19 127.6 20.1 224 78-304 89-335 (372)
31 KOG2766 Predicted membrane pro 99.6 1.9E-17 4.1E-22 144.8 -3.1 268 26-304 28-300 (336)
32 TIGR00803 nst UDP-galactose tr 99.6 8.9E-15 1.9E-19 130.7 13.0 192 99-301 2-222 (222)
33 COG5006 rhtA Threonine/homoser 99.5 2.6E-11 5.5E-16 106.6 26.2 255 37-309 29-288 (292)
34 KOG4510 Permease of the drug/m 99.4 1.8E-13 3.9E-18 120.8 3.6 214 82-305 104-327 (346)
35 PF00892 EamA: EamA-like trans 99.0 4.1E-09 8.8E-14 84.5 10.3 123 172-302 2-125 (126)
36 COG2510 Predicted membrane pro 99.0 1.4E-09 3.1E-14 86.0 7.2 134 163-302 5-138 (140)
37 PRK15430 putative chlorampheni 98.8 4.2E-07 9.2E-12 84.7 18.5 140 158-302 5-144 (296)
38 TIGR00688 rarD rarD protein. T 98.8 6.3E-07 1.4E-11 81.7 17.8 138 161-302 2-141 (256)
39 KOG4314 Predicted carbohydrate 98.6 1.4E-07 2.9E-12 80.4 8.2 217 78-304 56-277 (290)
40 PF06800 Sugar_transport: Suga 98.6 6.2E-06 1.3E-10 74.9 19.4 206 79-300 49-268 (269)
41 PF05653 Mg_trans_NIPA: Magnes 98.6 8.5E-07 1.8E-11 82.6 13.3 216 79-305 53-294 (300)
42 PF13536 EmrE: Multidrug resis 98.6 3.1E-07 6.8E-12 73.1 9.0 78 73-153 32-110 (113)
43 TIGR03340 phn_DUF6 phosphonate 98.5 2.4E-06 5.3E-11 79.0 14.0 133 163-303 3-135 (281)
44 PRK02971 4-amino-4-deoxy-L-ara 98.5 1.4E-05 3.1E-10 65.0 15.4 121 161-305 2-124 (129)
45 PF00892 EamA: EamA-like trans 98.4 1.7E-06 3.6E-11 69.1 9.4 102 45-148 18-125 (126)
46 PF13536 EmrE: Multidrug resis 98.4 1.3E-05 2.8E-10 63.7 14.2 102 203-307 8-110 (113)
47 PLN00411 nodulin MtN21 family 98.3 3.7E-05 7.9E-10 73.6 16.0 136 164-304 16-157 (358)
48 COG2510 Predicted membrane pro 98.3 5.8E-06 1.3E-10 65.8 8.6 125 22-148 5-138 (140)
49 TIGR00950 2A78 Carboxylate/Ami 98.2 3.6E-05 7.8E-10 69.9 13.5 117 175-303 3-119 (260)
50 COG2962 RarD Predicted permeas 98.2 8.4E-05 1.8E-09 67.5 15.1 142 159-306 5-147 (293)
51 PRK15051 4-amino-4-deoxy-L-ara 98.0 3.7E-05 8E-10 61.0 9.2 65 83-149 45-109 (111)
52 PRK11272 putative DMT superfam 97.9 0.00053 1.1E-08 63.8 15.5 128 165-303 12-141 (292)
53 PRK11689 aromatic amino acid e 97.9 0.00047 1E-08 64.2 14.9 130 161-303 4-137 (295)
54 TIGR00817 tpt Tpt phosphate/ph 97.8 0.0006 1.3E-08 63.6 15.1 123 173-302 14-136 (302)
55 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.0003 6.5E-09 55.7 10.5 63 240-302 46-108 (111)
56 PRK11453 O-acetylserine/cystei 97.8 0.0011 2.3E-08 61.9 15.9 124 164-303 7-132 (299)
57 PTZ00343 triose or hexose phos 97.8 0.00076 1.6E-08 64.5 15.2 139 160-303 48-186 (350)
58 PF08449 UAA: UAA transporter 97.7 0.0011 2.3E-08 62.1 14.4 128 176-310 15-143 (303)
59 PRK10532 threonine and homoser 97.7 0.0016 3.4E-08 60.6 15.0 129 20-151 148-283 (293)
60 COG0697 RhaT Permeases of the 97.6 0.0044 9.5E-08 56.6 16.5 143 159-308 5-148 (292)
61 KOG2922 Uncharacterized conser 97.6 0.00013 2.9E-09 67.0 6.1 212 84-306 73-309 (335)
62 PRK10452 multidrug efflux syst 97.6 0.00086 1.9E-08 53.7 10.0 67 239-305 38-105 (120)
63 PRK13499 rhamnose-proton sympo 97.6 0.08 1.7E-06 50.2 25.8 220 80-304 78-342 (345)
64 PF04142 Nuc_sug_transp: Nucle 97.5 0.001 2.2E-08 60.3 10.8 70 239-308 25-94 (244)
65 PF06027 DUF914: Eukaryotic pr 97.5 0.0043 9.3E-08 58.6 14.9 77 230-307 79-155 (334)
66 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.0013 2.8E-08 53.6 9.2 72 78-151 50-124 (129)
67 TIGR00776 RhaT RhaT L-rhamnose 97.4 0.0019 4E-08 60.1 11.3 128 19-149 151-288 (290)
68 PRK13499 rhamnose-proton sympo 97.4 0.0076 1.6E-07 57.1 15.0 141 158-307 4-157 (345)
69 PF04657 DUF606: Protein of un 97.3 0.012 2.7E-07 48.4 14.5 131 163-300 3-138 (138)
70 PRK09541 emrE multidrug efflux 97.3 0.0025 5.4E-08 50.3 9.9 64 242-305 41-105 (110)
71 PF03151 TPT: Triose-phosphate 97.2 0.0066 1.4E-07 50.3 11.8 67 80-148 86-152 (153)
72 PRK10452 multidrug efflux syst 97.2 0.003 6.4E-08 50.6 8.9 72 78-151 33-105 (120)
73 PF07857 DUF1632: CEO family ( 97.1 0.0021 4.6E-08 58.2 8.1 73 239-311 63-142 (254)
74 COG2076 EmrE Membrane transpor 97.1 0.0067 1.5E-07 47.2 9.4 64 242-305 41-105 (106)
75 COG2076 EmrE Membrane transpor 97.1 0.0053 1.2E-07 47.7 8.7 71 78-150 33-104 (106)
76 PRK11431 multidrug efflux syst 97.0 0.0093 2E-07 46.6 9.9 62 242-303 40-102 (105)
77 PRK11431 multidrug efflux syst 97.0 0.0067 1.5E-07 47.4 8.9 72 76-149 30-102 (105)
78 PRK10650 multidrug efflux syst 97.0 0.0067 1.4E-07 47.7 8.9 68 78-147 38-106 (109)
79 PRK09541 emrE multidrug efflux 96.9 0.0083 1.8E-07 47.3 9.2 70 80-151 35-105 (110)
80 PRK10650 multidrug efflux syst 96.9 0.014 3E-07 46.0 9.9 61 242-302 46-107 (109)
81 PF05653 Mg_trans_NIPA: Magnes 96.8 0.017 3.7E-07 54.0 12.0 121 158-305 4-124 (300)
82 PF06800 Sugar_transport: Suga 96.2 0.077 1.7E-06 48.5 11.5 124 19-145 137-267 (269)
83 PF00893 Multi_Drug_Res: Small 96.0 0.034 7.4E-07 42.4 7.2 53 242-294 40-93 (93)
84 COG3238 Uncharacterized protei 96.0 0.35 7.6E-06 40.2 13.4 138 160-303 4-146 (150)
85 KOG2234 Predicted UDP-galactos 95.6 1 2.2E-05 42.5 16.2 64 242-305 103-166 (345)
86 COG5006 rhtA Threonine/homoser 95.5 0.21 4.6E-06 44.9 11.1 128 20-149 148-282 (292)
87 KOG4510 Permease of the drug/m 95.4 0.0058 1.3E-07 55.0 1.1 72 234-305 100-171 (346)
88 PF00893 Multi_Drug_Res: Small 95.3 0.05 1.1E-06 41.5 5.7 57 82-140 36-93 (93)
89 KOG2765 Predicted membrane pro 95.3 0.039 8.5E-07 52.1 6.0 74 236-309 164-237 (416)
90 PF06379 RhaT: L-rhamnose-prot 95.0 0.66 1.4E-05 43.7 13.2 141 158-307 4-157 (344)
91 COG4975 GlcU Putative glucose 94.8 0.0076 1.7E-07 53.6 -0.1 208 82-305 66-287 (288)
92 PF10639 UPF0546: Uncharacteri 94.1 0.077 1.7E-06 41.9 4.1 63 83-147 49-112 (113)
93 PF10639 UPF0546: Uncharacteri 91.4 0.84 1.8E-05 36.1 6.5 58 243-300 53-111 (113)
94 PF08507 COPI_assoc: COPI asso 90.4 0.39 8.4E-06 39.3 4.1 12 288-299 90-101 (136)
95 KOG1441 Glucose-6-phosphate/ph 89.1 1.6 3.5E-05 41.0 7.6 134 15-150 158-308 (316)
96 TIGR00803 nst UDP-galactose tr 89.1 0.33 7.1E-06 43.0 2.9 63 82-146 159-221 (222)
97 KOG3912 Predicted integral mem 88.8 1.4 3E-05 40.4 6.5 66 239-304 94-159 (372)
98 COG4975 GlcU Putative glucose 88.4 0.17 3.6E-06 45.4 0.5 132 162-306 3-139 (288)
99 KOG1581 UDP-galactose transpor 87.6 7.6 0.00016 36.1 10.6 72 237-308 89-160 (327)
100 PRK06638 NADH:ubiquinone oxido 87.1 20 0.00043 31.3 14.3 34 273-306 134-167 (198)
101 KOG1580 UDP-galactose transpor 86.1 1 2.2E-05 40.2 4.0 65 243-307 97-161 (337)
102 PRK01637 hypothetical protein; 83.9 2.8 6.1E-05 38.8 6.3 20 285-304 248-267 (286)
103 KOG4314 Predicted carbohydrate 82.7 0.97 2.1E-05 39.2 2.4 63 243-305 65-127 (290)
104 PF04657 DUF606: Protein of un 78.2 36 0.00078 27.8 12.3 74 72-146 62-138 (138)
105 PF05684 DUF819: Protein of un 75.2 18 0.00039 35.0 8.8 7 126-132 14-20 (378)
106 PF02694 UPF0060: Uncharacteri 71.1 40 0.00087 26.3 8.1 48 258-305 58-105 (107)
107 PF14283 DUF4366: Domain of un 70.5 2.1 4.6E-05 38.0 1.2 18 294-311 170-187 (218)
108 PF04342 DUF486: Protein of un 70.2 5.5 0.00012 30.9 3.2 29 272-300 77-105 (108)
109 KOG1444 Nucleotide-sugar trans 69.4 69 0.0015 30.0 10.7 135 164-304 15-150 (314)
110 TIGR00939 2a57 Equilibrative N 68.6 47 0.001 32.7 10.3 18 286-303 177-194 (437)
111 COG3169 Uncharacterized protei 66.8 20 0.00042 27.5 5.4 30 272-301 84-113 (116)
112 TIGR00910 2A0307_GadC glutamat 66.6 1.5E+02 0.0032 29.8 13.7 17 6-22 66-82 (507)
113 PF10587 EF-1_beta_acid: Eukar 66.6 1.9 4.1E-05 24.9 0.0 11 327-337 3-13 (28)
114 KOG2922 Uncharacterized conser 66.3 2.6 5.6E-05 39.4 0.8 121 158-305 18-138 (335)
115 COG2271 UhpC Sugar phosphate p 65.9 9.9 0.00021 37.2 4.7 68 259-333 161-229 (448)
116 PRK02237 hypothetical protein; 65.7 63 0.0014 25.3 10.0 48 258-305 60-107 (109)
117 PF04971 Lysis_S: Lysis protei 64.8 5.8 0.00013 28.1 2.2 23 291-313 42-64 (68)
118 KOG1287 Amino acid transporter 62.3 1.8E+02 0.0038 29.2 14.4 52 281-332 416-473 (479)
119 PF12794 MscS_TM: Mechanosensi 59.7 1.6E+02 0.0035 27.9 12.4 24 281-304 224-247 (340)
120 PF04342 DUF486: Protein of un 59.7 61 0.0013 25.2 7.1 60 85-146 45-105 (108)
121 KOG2592 Tumor differentially e 59.0 12 0.00025 36.0 3.7 57 281-338 294-352 (426)
122 PF00558 Vpu: Vpu protein; In 58.9 3.9 8.4E-05 30.2 0.5 13 324-336 51-63 (81)
123 PF14851 FAM176: FAM176 family 56.9 9.1 0.0002 32.0 2.4 16 281-296 20-35 (153)
124 KOG4831 Unnamed protein [Funct 56.2 14 0.0003 28.7 3.1 61 84-147 61-123 (125)
125 cd01324 cbb3_Oxidase_CcoQ Cyto 56.0 9.6 0.00021 25.2 1.9 28 289-316 17-44 (48)
126 PF13038 DUF3899: Domain of un 54.2 4 8.6E-05 30.8 -0.1 21 284-304 3-23 (92)
127 PF00558 Vpu: Vpu protein; In 53.1 14 0.0003 27.3 2.6 18 320-337 44-61 (81)
128 PF11446 DUF2897: Protein of u 52.7 8.8 0.00019 26.2 1.4 13 291-303 8-20 (55)
129 PF05297 Herpes_LMP1: Herpesvi 52.7 4.6 0.0001 37.0 0.0 69 125-197 72-141 (381)
130 PRK13108 prolipoprotein diacyl 50.5 21 0.00045 35.5 4.1 24 283-306 254-277 (460)
131 PF07444 Ycf66_N: Ycf66 protei 50.5 13 0.00028 27.7 2.1 30 282-311 4-33 (84)
132 PRK02237 hypothetical protein; 50.4 33 0.00072 26.8 4.4 35 115-151 73-107 (109)
133 PF11022 DUF2611: Protein of u 49.9 13 0.00028 26.7 2.0 51 276-326 5-57 (71)
134 KOG1479 Nucleoside transporter 48.5 2.7E+02 0.0059 27.2 12.0 56 252-307 147-206 (406)
135 PF14002 YniB: YniB-like prote 48.5 43 0.00092 28.1 5.0 68 271-338 51-131 (166)
136 COG4736 CcoQ Cbb3-type cytochr 48.3 13 0.00028 25.8 1.7 26 288-313 15-40 (60)
137 PF07168 Ureide_permease: Urei 47.9 9.3 0.0002 35.5 1.2 65 236-303 77-146 (336)
138 PF02694 UPF0060: Uncharacteri 47.2 30 0.00065 26.9 3.7 36 114-151 70-105 (107)
139 PF05297 Herpes_LMP1: Herpesvi 47.0 5.9 0.00013 36.3 -0.2 63 242-304 119-185 (381)
140 KOG1623 Multitransmembrane pro 46.9 62 0.0013 29.2 6.2 22 280-301 182-204 (243)
141 KOG1583 UDP-N-acetylglucosamin 45.3 18 0.00039 33.3 2.6 44 267-310 101-144 (330)
142 PF13980 UPF0370: Uncharacteri 44.8 10 0.00022 26.0 0.7 50 288-339 9-58 (63)
143 PF12597 DUF3767: Protein of u 44.1 9.3 0.0002 30.5 0.5 51 281-331 64-114 (118)
144 PF06422 PDR_CDR: CDR ABC tran 43.5 21 0.00046 27.6 2.5 10 327-336 94-103 (103)
145 PF15102 TMEM154: TMEM154 prot 42.4 23 0.00049 29.3 2.5 26 288-313 66-91 (146)
146 KOG0569 Permease of the major 41.5 3.8E+02 0.0083 26.9 15.4 18 277-294 175-192 (485)
147 KOG2766 Predicted membrane pro 41.4 5.8 0.00013 36.0 -1.1 69 239-307 86-154 (336)
148 PF04478 Mid2: Mid2 like cell 41.3 24 0.00052 29.3 2.5 10 289-298 58-67 (154)
149 PRK02935 hypothetical protein; 41.2 86 0.0019 24.4 5.3 24 284-307 41-64 (110)
150 PF05545 FixQ: Cbb3-type cytoc 40.4 16 0.00035 24.0 1.2 25 289-313 16-40 (49)
151 COG5070 VRG4 Nucleotide-sugar 40.0 83 0.0018 28.2 5.7 60 80-141 229-288 (309)
152 PF15325 MRI: Modulator of ret 39.5 30 0.00066 26.4 2.6 16 325-340 52-67 (106)
153 PF02447 GntP_permease: GntP f 37.3 4.2E+02 0.0092 26.2 15.0 25 127-151 18-42 (441)
154 PF08507 COPI_assoc: COPI asso 37.2 91 0.002 25.2 5.4 24 268-299 85-108 (136)
155 PF03348 Serinc: Serine incorp 37.2 39 0.00085 33.3 3.8 25 282-306 282-306 (429)
156 COG2851 CitM H+/citrate sympor 35.7 20 0.00043 34.4 1.4 16 281-296 176-191 (433)
157 PF15345 TMEM51: Transmembrane 35.6 20 0.00044 31.9 1.3 26 288-313 66-91 (233)
158 PF09656 PGPGW: Putative trans 35.2 1.4E+02 0.0031 20.1 5.9 45 133-186 5-49 (53)
159 COG3238 Uncharacterized protei 35.2 2.6E+02 0.0057 23.2 10.0 104 44-148 32-145 (150)
160 PRK11469 hypothetical protein; 34.8 68 0.0015 27.7 4.5 36 257-292 40-75 (188)
161 COG4858 Uncharacterized membra 34.4 3.1E+02 0.0067 23.8 8.9 80 21-100 101-186 (226)
162 KOG1582 UDP-galactose transpor 34.1 2.2E+02 0.0048 26.4 7.6 49 102-152 287-335 (367)
163 PF05961 Chordopox_A13L: Chord 34.0 47 0.001 23.5 2.7 23 286-308 5-27 (68)
164 PF03605 DcuA_DcuB: Anaerobic 33.0 4.5E+02 0.0098 25.3 15.2 11 179-189 72-82 (364)
165 PF04697 Pinin_SDK_N: pinin/SD 31.6 19 0.00041 28.9 0.5 15 326-340 98-112 (134)
166 PHA03049 IMV membrane protein; 31.5 63 0.0014 22.8 2.9 23 286-308 5-27 (68)
167 TIGR02840 spore_YtaF putative 31.5 1.5E+02 0.0033 25.9 6.2 45 255-299 31-77 (206)
168 COG5336 Uncharacterized protei 31.4 1.8E+02 0.0039 22.8 5.7 21 284-304 73-93 (116)
169 PF07423 DUF1510: Protein of u 30.1 54 0.0012 29.1 3.1 20 286-305 17-36 (217)
170 PF12768 Rax2: Cortical protei 29.3 47 0.001 30.7 2.7 39 291-340 242-281 (281)
171 PF12606 RELT: Tumour necrosis 28.2 62 0.0013 21.6 2.4 13 293-305 13-25 (50)
172 PF15048 OSTbeta: Organic solu 28.2 65 0.0014 25.8 2.9 13 291-303 44-56 (125)
173 PF02487 CLN3: CLN3 protein; 28.1 99 0.0021 30.2 4.8 25 125-149 84-108 (402)
174 COG3169 Uncharacterized protei 28.0 1.1E+02 0.0024 23.5 4.0 30 116-147 84-113 (116)
175 PRK10599 calcium/sodium:proton 27.9 5.6E+02 0.012 24.7 16.2 17 281-297 164-180 (366)
176 PRK13664 hypothetical protein; 27.2 34 0.00074 23.3 1.0 49 288-337 9-57 (62)
177 PF14880 COX14: Cytochrome oxi 26.1 8.3 0.00018 26.6 -2.2 26 281-306 14-39 (59)
178 COG1288 Predicted membrane pro 25.9 83 0.0018 31.0 3.8 54 280-333 213-267 (481)
179 PF06679 DUF1180: Protein of u 25.9 72 0.0016 27.0 3.0 18 320-337 135-152 (163)
180 PRK09109 motC flagellar motor 25.6 53 0.0011 29.7 2.3 40 261-300 5-45 (246)
181 PF10225 DUF2215: Uncharacteri 25.6 5E+02 0.011 23.4 12.9 48 249-296 113-160 (249)
182 COG3115 ZipA Cell division pro 25.5 79 0.0017 29.3 3.4 17 291-307 12-29 (324)
183 PRK11715 inner membrane protei 25.4 6.7E+02 0.015 24.8 12.8 56 126-187 326-383 (436)
184 PF01863 DUF45: Protein of unk 24.9 26 0.00057 30.2 0.2 8 1-8 137-144 (205)
185 PF15387 DUF4611: Domain of un 24.4 30 0.00065 26.2 0.4 18 320-337 61-78 (96)
186 KOG1608 Protein transporter of 24.3 2E+02 0.0043 26.8 5.6 16 264-279 257-272 (374)
187 COG4280 Predicted membrane pro 24.2 4E+02 0.0086 23.5 7.2 18 281-298 61-79 (236)
188 PF11027 DUF2615: Protein of u 24.1 1.5E+02 0.0033 23.0 4.2 42 286-335 55-96 (103)
189 COG2978 AbgT Putative p-aminob 24.1 61 0.0013 32.1 2.5 92 245-340 178-269 (516)
190 PRK00269 zipA cell division pr 24.0 83 0.0018 29.2 3.2 24 288-311 10-33 (293)
191 COG1451 Predicted metal-depend 24.0 27 0.00058 31.1 0.1 9 1-9 148-156 (223)
192 PF11023 DUF2614: Protein of u 24.0 1.9E+02 0.004 22.8 4.7 23 284-306 40-62 (114)
193 KOG3879 Predicted membrane pro 23.3 36 0.00079 30.2 0.8 13 325-337 218-230 (267)
194 PF10066 DUF2304: Uncharacteri 23.1 76 0.0016 24.9 2.5 24 279-303 62-85 (115)
195 PRK14397 membrane protein; Pro 22.1 5.1E+02 0.011 23.1 7.7 20 160-179 47-66 (222)
196 PF08592 DUF1772: Domain of un 21.9 2.7E+02 0.0058 22.0 5.7 28 280-307 60-87 (139)
197 PF10754 DUF2569: Protein of u 21.5 4.6E+02 0.0099 21.5 7.6 28 158-185 118-145 (149)
198 TIGR00892 2A0113 monocarboxyla 21.3 7.6E+02 0.017 24.0 10.5 13 21-33 15-27 (455)
199 PRK09412 anaerobic C4-dicarbox 21.0 8E+02 0.017 24.1 15.9 12 116-129 8-19 (433)
200 PRK12489 anaerobic C4-dicarbox 21.0 8.3E+02 0.018 24.2 18.6 20 281-300 166-187 (443)
201 PF02468 PsbN: Photosystem II 20.7 1.4E+02 0.0031 19.2 2.9 14 291-304 14-27 (43)
202 MTH00057 ND6 NADH dehydrogenas 20.6 5.5E+02 0.012 22.0 12.9 35 273-307 133-167 (186)
203 PF00873 ACR_tran: AcrB/AcrD/A 20.4 8.2E+02 0.018 27.0 10.7 59 114-174 343-402 (1021)
204 PRK10263 DNA translocase FtsK; 20.1 1.3E+03 0.029 26.4 13.3 11 134-144 25-35 (1355)
No 1
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-39 Score=282.48 Aligned_cols=318 Identities=42% Similarity=0.703 Sum_probs=275.3
Q ss_pred CCCchhHHHHHHHHHHHHH--------HHhhccCC-hhHHHHHHHHHHHHHHHH--HhcCCCCCCCchhHHHHHHHHHHH
Q 019428 18 NGNNFSFALLGSSLVISSM--------ASARLQFS-YGWYFTFIQGFVYLVLIY--LQGFTTKQMMNPWKTYVKLSAVLM 86 (341)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--------i~~~~~F~-~~~~lt~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (341)
+++--+|++|++++|..+. +|++.+|+ |+|.+|+.|++++..+.. .+.++.+++..|||.|..++.+..
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~ 117 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTV 117 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhh
Confidence 3445689999999998874 66777886 999999999999876655 356777788899999999999999
Q ss_pred hhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHH
Q 019428 87 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMI 166 (341)
Q Consensus 87 ~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~ 166 (341)
+++.++|-|+.|+++|++.++|+|+.++|++.+.++ -++|+.+.++.+..+.++|++.+...|.+.+++++..|+.++
T Consensus 118 gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifI--qGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mI 195 (367)
T KOG1582|consen 118 GTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFI--QGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMI 195 (367)
T ss_pred hccccCcCccccccCcHHHHHHhhhhhhhhheeeee--ccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHH
Confidence 999999999999999999999999999999999999 689999999999999999999999999998899999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchH-HHHHHHHHHHHHHHHH
Q 019428 167 SGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQ 245 (341)
Q Consensus 167 l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~ 245 (341)
-+|.+++|+....||+.+++++. +..++++|+..++.++++....++||+.+++++...||. ...+.++.+..+++++
T Consensus 196 sgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~ 274 (367)
T KOG1582|consen 196 SGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGI 274 (367)
T ss_pred HHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhH
Confidence 99999999999999999998763 568999999999999998888899999999998888886 6677777788889999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhh
Q 019428 246 VSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKL 325 (341)
Q Consensus 246 ~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~ 325 (341)
.+....++..||.+++.+++.|+.+++++|+++|.+|+|.++.-|..+++.|+++..+.|+.+.+..+-.+...+..+
T Consensus 275 ~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~~~~~~~~r~~~~~~-- 352 (367)
T KOG1582|consen 275 VFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKIPLASLIRRIVARAA-- 352 (367)
T ss_pred HHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCCchhhHHhhhhhhhc--
Confidence 999999999999999999999999999999999999999999999999999999999887433322111111112111
Q ss_pred cccccccccccccCCC
Q 019428 326 SFSEREEADEEKRAPV 341 (341)
Q Consensus 326 ~~~~~~~~~~~~~~~~ 341 (341)
++-|-|+|+|++..|
T Consensus 353 -g~~~~~~~r~~~~~V 367 (367)
T KOG1582|consen 353 -GKVDRSVDRKDPMLV 367 (367)
T ss_pred -cccccccccccccCC
Confidence 555566777777665
No 2
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1e-36 Score=284.79 Aligned_cols=283 Identities=31% Similarity=0.510 Sum_probs=245.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHH--hcCC-CCCCCchhHHHHHHHHHHHhhHHHHHHhhcC
Q 019428 23 SFALLGSSLVISSMASARLQFS-YGWYFTFIQGFVYLVLIYL--QGFT-TKQMMNPWKTYVKLSAVLMGSHGLTKGSLAF 98 (341)
Q Consensus 23 ~~~~~~~~~~~~~~i~~~~~F~-~~~~lt~~q~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~ 98 (341)
.|..+++..+..+.+..+..+. +|++++++|++...+.+.. ...+ +++++.|+++|++.++++.++..++|.|++|
T Consensus 8 i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 8 IFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666655555 8999999999987766553 2222 4456889999999999999999999999999
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCc------hHHHHHHHHHHHHH
Q 019428 99 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNF------SMIGVIMISGALIM 172 (341)
Q Consensus 99 is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~------~~~G~~l~l~a~~~ 172 (341)
+|+|+++++|+++|++++++++++ +|||++++|+++++++++|++++...|.+.+.+. ...|++++++|.++
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~--~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~ 165 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLI--LGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLL 165 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHh--cCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999998775432211 23499999999999
Q ss_pred HHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 019428 173 DSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLS 250 (341)
Q Consensus 173 ~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~ 250 (341)
+|++.++|||+.++++ .++.++++|++.++.++.++.... +||..+..++...+|..+..+++.++++++++.+.+.
T Consensus 166 ~a~~~~~qe~~~~~~~-~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~ 244 (303)
T PF08449_consen 166 DAFTGVYQEKLFKKYG-KSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFY 244 (303)
T ss_pred HHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 467999999999999998877666 7888777777777888888888888999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCC
Q 019428 251 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 251 ~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
+++++||++.++++++|+++++++|+++|||++++.+|+|+++++.|..+|++.|+|+
T Consensus 245 ~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 245 LIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999988765
No 3
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-36 Score=257.99 Aligned_cols=292 Identities=25% Similarity=0.405 Sum_probs=250.3
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHHHHhhc-----------------cCChhHHHHHHHHHHHHHHHHH-hcCC
Q 019428 6 GLCLGFLSQIDPNGNNFSFALLGSSLVISSMASARL-----------------QFSYGWYFTFIQGFVYLVLIYL-QGFT 67 (341)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------------~F~~~~~lt~~q~~~~~~~~~~-~~~~ 67 (341)
|++-+|++ +.-++.+|..++|.++..|... .|.|...|.++|+.+..++... ...|
T Consensus 2 ~~~~s~lp------er~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir 75 (337)
T KOG1580|consen 2 GEVRSWLP------ERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIR 75 (337)
T ss_pred Cccccccc------cccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeec
Confidence 34455654 3457888999999998776543 2778889999999998776542 2233
Q ss_pred CC--CCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHH
Q 019428 68 TK--QMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLI 145 (341)
Q Consensus 68 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~ 145 (341)
++ ..+.|-+.|...++.|.++++.+|.++||+++|++.+-|||+|+++|+++.++ .||+++|++++++++++.|++
T Consensus 76 ~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~--~~KsY~w~kY~cVL~IV~GVa 153 (337)
T KOG1580|consen 76 KKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF--AHKSYHWRKYCCVLMIVVGVA 153 (337)
T ss_pred ccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh--hcccccHHHHHHHHHHHHHHH
Confidence 32 23567888999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHhccCCCCC---CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 019428 146 LFTLADAQTS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWN 222 (341)
Q Consensus 146 l~~~~~~~~~---~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 222 (341)
++.+.+.... ......|-++.++|.-++++....|+++.+.+++ +.-+|++|+|+++..++...++.+||+++...
T Consensus 154 lFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y 232 (337)
T KOG1580|consen 154 LFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY 232 (337)
T ss_pred HhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehhhHHHHHH
Confidence 9999876432 2345789999999999999999999998776653 45689999999999988877888999999888
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 223 SCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 223 ~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
+...||.+|..+.+.++++++++.+.|..+..+||++.+++.+.|+.+++++|+++|++|++.+||+|..+++.|...-.
T Consensus 233 F~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 233 FVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 88889998888888889999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccCC
Q 019428 303 LPAD 306 (341)
Q Consensus 303 ~~k~ 306 (341)
...+
T Consensus 313 ~~GK 316 (337)
T KOG1580|consen 313 VDGK 316 (337)
T ss_pred hcCC
Confidence 5443
No 4
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=255.83 Aligned_cols=285 Identities=26% Similarity=0.421 Sum_probs=253.6
Q ss_pred chhHHHHHHHHHHHHHHHhhc--------------cCChhHHHHHHHHHHHHHHHHH--hcCCC-CCCCchhHHHHHHHH
Q 019428 21 NFSFALLGSSLVISSMASARL--------------QFSYGWYFTFIQGFVYLVLIYL--QGFTT-KQMMNPWKTYVKLSA 83 (341)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~~~--------------~F~~~~~lt~~q~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~ 83 (341)
-...++|-+|++.....+..+ +|+++.++.++|.++..++++. ++... .+.+.||+.|..+++
T Consensus 12 ~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~ 91 (327)
T KOG1581|consen 12 IILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISF 91 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHH
Confidence 457888999998887666544 3889999999999998877653 33332 345789999999999
Q ss_pred HHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCC-----CCc
Q 019428 84 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS-----PNF 158 (341)
Q Consensus 84 ~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~-----~~~ 158 (341)
.+..+..+++.||+|+|+|++++.|+|+.++||+++.++ +|+|++.++++...++..|+.++...+.+.+ ..+
T Consensus 92 tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lv--y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 92 TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLV--YGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHH--hcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 999999999999999999999999999999999999999 9999999999999999999999988754331 246
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHH
Q 019428 159 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 238 (341)
Q Consensus 159 ~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 238 (341)
.+.|+.++..+.++||+.+..|+++.+++ +.+++++++++|+++++.....++..|.+.++.++...||+++..+++.+
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 89999999999999999999999999854 47889999999999998887777778888888888888999998888889
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCC
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
.+++++|.+.|+.+++.||++.+++.++|+++++++|.++||++++..|+.|..+++.|+.+-.+.|.++
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999988877663
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=3e-31 Score=247.80 Aligned_cols=279 Identities=18% Similarity=0.191 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHh---cCCCC--CCCchhHHHHHHHHHHHhhHHHHHHhhcC
Q 019428 24 FALLGSSLVISSMASARLQFSYGWYFTFIQGFVYLVLIYLQ---GFTTK--QMMNPWKTYVKLSAVLMGSHGLTKGSLAF 98 (341)
Q Consensus 24 ~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~sl~~ 98 (341)
|..++.+....|+.--. .|++|+++++.|+.+..+...+. +.+++ ..+.+++.+++.|++++.+..++|.|++|
T Consensus 10 w~~~~~~~~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 88 (302)
T TIGR00817 10 WYFLNVYFNIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSK 88 (302)
T ss_pred HHHHHHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445554444442111 48999999999988866543321 22221 12346788889999999999999999999
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHH
Q 019428 99 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGN 178 (341)
Q Consensus 99 is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v 178 (341)
++++++++++++.|++++++++++ +|||++++++++++++++|+++....+ .+++..|++++++|+++++++.+
T Consensus 89 ~s~s~~~li~~~~Pv~~~ll~~~~--~~e~~~~~~~~~l~l~~~Gv~l~~~~~----~~~~~~G~~~~l~a~~~~a~~~v 162 (302)
T TIGR00817 89 VAVSFTHTIKAMEPFFSVVLSAFF--LGQEFPSTLWLSLLPIVGGVALASDTE----LSFNWAGFLSAMISNITFVSRNI 162 (302)
T ss_pred ccHHHHHHHHhcchHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHhhhcCCc----ccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999998875433 23567899999999999999999
Q ss_pred HHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHh----hch-HHHHHHHHHH-HHHHHHHHHHHHH
Q 019428 179 LQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAW-NSCS----QHL-YVYGVLVFEA-MATFIGQVSVLSL 251 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~----~~~-~~~~~l~l~~-~~~~l~~~~~~~~ 251 (341)
+.||..++. +.++.+.+.|+...+.+.++|.....++..... +... ... ..+...+..+ .+....+..++.+
T Consensus 163 ~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (302)
T TIGR00817 163 FSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFML 241 (302)
T ss_pred HHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876632 246788889999888888877655433211111 1100 011 1222122222 2333445677889
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcc
Q 019428 252 IALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 252 i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
++++||+++++.+++||++++++|++++||++|+.+++|.++++.|+.+|++.|.|+++
T Consensus 242 l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 242 LGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 99999999999999999999999999999999999999999999999999987655443
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=2.4e-30 Score=246.17 Aligned_cols=278 Identities=15% Similarity=0.193 Sum_probs=208.9
Q ss_pred hhHHHHHHHHHHHHH---HHhhc---cCChhHHHHHHHHHHHHHHHH---HhcCCCCC----CCchhHHHHHHHHHHHhh
Q 019428 22 FSFALLGSSLVISSM---ASARL---QFSYGWYFTFIQGFVYLVLIY---LQGFTTKQ----MMNPWKTYVKLSAVLMGS 88 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~---i~~~~---~F~~~~~lt~~q~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~ 88 (341)
.+....+..++..+. ++||+ .||||++++++|+++.+++.. ..++++++ .+.+++..+++|+++...
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~ 127 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555553 45554 589999999999998754332 12333221 123567888999998777
Q ss_pred HHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHH
Q 019428 89 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISG 168 (341)
Q Consensus 89 ~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~ 168 (341)
....+.|++++++++++++|++.|++++++++++ +|||++++++++++++++|+++.+.+|. ++++.|++++++
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~--l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----~~~~~G~~~~l~ 201 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF--LKQFLNLYAYLSLIPIVGGVALASVKEL----HFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHheecccc----hhHHHHHHHHHH
Confidence 7778999999999999999999999999999999 9999999999999999999999886543 457889999999
Q ss_pred HHHHHHhHHHHHHHHhhhCC----CCChHHHHHHHHHHHHHHHHHHHh-hcchH-HHHHHHH--h--hch--HHHHHHHH
Q 019428 169 ALIMDSFLGNLQEAIFTMNP----ETTQMEMLFCSTVVGLPMLIPPML-LTGEL-FKAWNSC--S--QHL--YVYGVLVF 236 (341)
Q Consensus 169 a~~~~al~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~-~~~~~~~--~--~~~--~~~~~l~l 236 (341)
|++++|+++++.|+.+++.+ +.++.+...+..+++.++++|... .++.. ...+... . ... ..+..++.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 99999999999999876542 234555566667788888777644 32211 1111000 0 000 11122333
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 237 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 237 ~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
+++..++.+.+.|.+++++||+++++.+++||++++++|++++||++|+.+++|.++++.|+++|++.|
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 334444444555689999999999999999999999999999999999999999999999999999764
No 7
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.98 E-value=3.7e-33 Score=257.15 Aligned_cols=268 Identities=18% Similarity=0.290 Sum_probs=221.0
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHHHH-h--cCCC---CCCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhc
Q 019428 37 ASARLQFSYGWYFTFIQGFVYLVLIYL-Q--GFTT---KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKST 110 (341)
Q Consensus 37 i~~~~~F~~~~~lt~~q~~~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~ 110 (341)
++++++|+||+++|.+|..+..+.... + +..+ .+++.+++..+++|+.++++.+++|.|++|++++++|++|++
T Consensus 39 il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~ 118 (316)
T KOG1441|consen 39 ILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKAL 118 (316)
T ss_pred hhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhh
Confidence 555568999999999998886654332 2 2222 124578999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhh-CCC
Q 019428 111 KVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTM-NPE 189 (341)
Q Consensus 111 ~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~-~~~ 189 (341)
+|+++.++++++ .+|++++..++++++++.|+++.+.+|. ++++.|++.++++.+..++++++.++++++ ..+
T Consensus 119 ~P~~tvl~~~~~--~~~~~s~~~~lsL~piv~GV~ias~~e~----~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~ 192 (316)
T KOG1441|consen 119 MPPFTVLLSVLL--LGKTYSSMTYLSLLPIVFGVAIASVTEL----SFNLFGFISAMISNLAFALRNILSKKLLTSKGES 192 (316)
T ss_pred cchhHHHHHHHH--hCCCCcceEEEEEEEeeeeEEEeeeccc----cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999 8999999999999999999999998774 579999999999999999999999998863 345
Q ss_pred CChHHHHHHHHHHHHHHHH-HHHh-hcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 019428 190 TTQMEMLFCSTVVGLPMLI-PPML-LTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTAR 267 (341)
Q Consensus 190 ~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~ 267 (341)
.++++++.|.+++++..++ |... .+|+....+.....+-..+. .++..++.+..|...|.+++++||+|.++.+++|
T Consensus 193 ~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K 271 (316)
T KOG1441|consen 193 LNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMK 271 (316)
T ss_pred cCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccce
Confidence 7889999999999988888 6433 23332100000000111222 3334488788899999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCccc
Q 019428 268 KAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 268 ~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~ 311 (341)
+++.+..|+++|+||+|+.|.+|+++.+.|+.+|++.|.+++++
T Consensus 272 ~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 272 RIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred EEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999876654
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=2e-27 Score=221.84 Aligned_cols=279 Identities=16% Similarity=0.209 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH-HHHHhcCCC------CCCCchhHHHHHHHHHHHhhHHHHHH
Q 019428 22 FSFALLGSSLVISSMASARLQFSYGWYFTFIQGFVYLV-LIYLQGFTT------KQMMNPWKTYVKLSAVLMGSHGLTKG 94 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (341)
+++.+++++++... +-++ +++.|.+-++...+.-.+ ......+|+ +..+.+|++|+.++++...++.+.+.
T Consensus 21 lsl~~~~t~~~s~~-l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~ 98 (334)
T PF06027_consen 21 LSLCITGTGTFSSL-LANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVL 98 (334)
T ss_pred HHHHHHhHHHHHHH-HHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555553 3333 788888877776544222 111111221 12357899999999999999999999
Q ss_pred hhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCC-----CCCchHHHHHHHHHH
Q 019428 95 SLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----SPNFSMIGVIMISGA 169 (341)
Q Consensus 95 sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~-----~~~~~~~G~~l~l~a 169 (341)
|++|++++..+++.++..++++++++++ +|+|+++.|+++++++++|++++...|... ++++...|++++++|
T Consensus 99 a~~yTsvtS~~lL~~~~i~~~~~LS~~f--L~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~ 176 (334)
T PF06027_consen 99 AYQYTSVTSVQLLDCTSIPFVMILSFIF--LKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLG 176 (334)
T ss_pred HhhcccHhHHHhhhhhhhHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999998887543 134679999999999
Q ss_pred HHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 019428 170 LIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPML-LTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSV 248 (341)
Q Consensus 170 ~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~ 248 (341)
++++|++++.+|+..++. +..+.+....+++.++..+... ++.+ + +.....++..+..++...++.+..+...
T Consensus 177 a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~--~-i~~~~w~~~~~~~~v~~~~~lf~~y~l~ 250 (334)
T PF06027_consen 177 AILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERS--G-IESIHWTSQVIGLLVGYALCLFLFYSLV 250 (334)
T ss_pred HHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehh--h-hhccCCChhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999987764 4566666666666666554322 2221 1 1111123334444444455556666777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcc
Q 019428 249 LSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 249 ~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
...++..||+..++...+-++.++++++++||+++++..++|.++++.|+++|+..+.+.++
T Consensus 251 p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 251 PIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 88999999999999999999999999999999999999999999999999999987655443
No 9
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-27 Score=211.35 Aligned_cols=289 Identities=17% Similarity=0.232 Sum_probs=233.9
Q ss_pred CCCCchhHHHHHHHHHHHHH-HHhhccCChhHHHHHHHHHHHHHHHH-HhcCC--C-C-CCCchhHHHHHHHHHHHhhHH
Q 019428 17 PNGNNFSFALLGSSLVISSM-ASARLQFSYGWYFTFIQGFVYLVLIY-LQGFT--T-K-QMMNPWKTYVKLSAVLMGSHG 90 (341)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-i~~~~~F~~~~~lt~~q~~~~~~~~~-~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~ 90 (341)
|-.++..|.++|......|+ +.+.++||-..++...|.+++++... ++..+ . + -.+...|+|+|+++++.++..
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 33456677777777777776 56767777777888899998775443 33222 1 1 123456889999999999999
Q ss_pred HHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHH
Q 019428 91 LTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGAL 170 (341)
Q Consensus 91 l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~ 170 (341)
.+..+++|+++|+++++|..+|+.+++.+.++ +|+|+++..+.++..+.+|.......|. +++..|+.+++.++
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf--~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY~w~~~n~ 166 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLF--FGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGYSWALANC 166 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhh--cCcCchhhHHHHHHHHHHHHHhhccccc----eecchhHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999999888775 46778999999999
Q ss_pred HHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHH
Q 019428 171 IMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSC---SQHLYVYGVLVFEAMATFIGQVS 247 (341)
Q Consensus 171 ~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~l~l~~~~~~l~~~~ 247 (341)
+..+.+.++.|+..+.. +.+.+++++|.++.++|.+....+.+||.. ...+. ...+.++..+.++|++++.-+++
T Consensus 167 ~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~ 244 (314)
T KOG1444|consen 167 LTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYT 244 (314)
T ss_pred HHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999998876543 345688999999999998877777888865 33322 12345677788999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCccccc
Q 019428 248 VLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 248 ~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
.+++.+..||++.+++|......+.+.+++++|+++++.+.+|+.+.+.|-.+|++.+.|+++.++
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 999999999999999995555555555555666899999999999999999999999877665544
No 10
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=1.6e-27 Score=212.61 Aligned_cols=288 Identities=19% Similarity=0.281 Sum_probs=217.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHH-----hcCCCC-CCCchhHHHH----HHHHHHHhhHHHHHHhhcCCchhHHHHHhhc
Q 019428 41 LQFSYGWYFTFIQGFVYLVLIYL-----QGFTTK-QMMNPWKTYV----KLSAVLMGSHGLTKGSLAFLNYPAQLMFKST 110 (341)
Q Consensus 41 ~~F~~~~~lt~~q~~~~~~~~~~-----~~~~~~-~~~~~~~~~~----~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~ 110 (341)
.+|+||.+++.+|+++-..++.. +...++ +.+..|++++ |.++.-+.++.++|+|++|++++.|++.||+
T Consensus 40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSS 119 (349)
T KOG1443|consen 40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSS 119 (349)
T ss_pred cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeecccc
Confidence 37999999999999885544322 122222 2345677776 8899999999999999999999999999999
Q ss_pred chHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCC--
Q 019428 111 KVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNP-- 188 (341)
Q Consensus 111 ~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~-- 188 (341)
+++|+.+++.+++ -||+++.-.+.++++..|++++++.+. +++..|+.++++|+++.|+++.+.|.++++++
T Consensus 120 si~FIllFs~if~--lEk~~w~L~l~v~lI~~Glflft~KsT----qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~ 193 (349)
T KOG1443|consen 120 SILFILLFSLIFK--LEKFRWALVLIVLLIAVGLFLFTYKST----QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSA 193 (349)
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHhhheeEEEeccc----ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccc
Confidence 9999999999994 499999999999999999999998763 58999999999999999999999999888763
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-HhhcchHHHHHH--HHhhch-HH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019428 189 ETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWN--SCSQHL-YV---YGVLVFEAMATFIGQVSVLSLIALFGAATTA 261 (341)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~--~~~~~~-~~---~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~s 261 (341)
+.+|..++++..++....++|. +..+|......+ +...++ .. ...+.+.+..++..-.+.|..+.++|..+.+
T Consensus 194 ~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlS 273 (349)
T KOG1443|consen 194 KRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLS 273 (349)
T ss_pred cCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeee
Confidence 4578888888888766666664 456664322111 111122 12 2344555555555556779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccccccccc
Q 019428 262 MVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEK 337 (341)
Q Consensus 262 i~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (341)
+++..|.+.+++++..+.+|.++..+|+|..+++.|+..|...++. -|....+++....-.+|+++|..|+||
T Consensus 274 IaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~~~~---~~~~~~~p~~~~~~~~~~t~~~~~~e~ 346 (349)
T KOG1443|consen 274 IAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNEPQN---FKRKPSSPIVPVSIRSDLTNEMIAQED 346 (349)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccCccc---cccCCCCCccceecCcchhhhhhhccc
Confidence 9999999999999999999999999999999999999999443211 112233444444444444444444443
No 11
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3.9e-28 Score=213.59 Aligned_cols=281 Identities=23% Similarity=0.365 Sum_probs=229.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH--HhcCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhcC-
Q 019428 22 FSFALLGSSLVISSMASARLQFSYGWYFTFIQGFVYLVLIY--LQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAF- 98 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~- 98 (341)
..+.-||+++..++.+-.. .-..+..+|+.|++..+.-+. -.++...+++.|.|+|+..-..++...+++|+++++
T Consensus 10 ~vf~GCcsnvv~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~ 88 (330)
T KOG1583|consen 10 LVFGGCCSNVVFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFN 88 (330)
T ss_pred HHHHhhhchHHHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeec
Confidence 4677899999888876443 345678999999775433222 234544567899999999888888999999999999
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCC---------C----C--chHHHH
Q 019428 99 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS---------P----N--FSMIGV 163 (341)
Q Consensus 99 is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~---------~----~--~~~~G~ 163 (341)
++.|.+.++|+.+++.+|++++++ .+||++.+|+.+++++.+|+++++....... . + ....|+
T Consensus 89 I~~PlHiIfRsgsll~nM~~g~il--~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi 166 (330)
T KOG1583|consen 89 IPMPLHIIFRSGSLLANMILGWIL--LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGI 166 (330)
T ss_pred ccceEEEEEecCcHHHHHHHHHHh--ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHH
Confidence 999999999999999999999999 8999999999999999999999876432210 0 1 136899
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhc------------hHHH
Q 019428 164 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQH------------LYVY 231 (341)
Q Consensus 164 ~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~------------~~~~ 231 (341)
.+...|.+.+|...++||+..+|+++ ++-|.+||++..++|.++. ..+++.+.+.....+ |..|
T Consensus 167 ~lL~~al~~sa~mgiyqE~~Y~kyGK-h~~EalFytH~LsLP~Flf---~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 167 ALLVFALLLSAYMGIYQETTYQKYGK-HWKEALFYTHFLSLPLFLF---MGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhccchHHH---hcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 99999999999999999999999986 4789999999999987653 345555444433222 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCc
Q 019428 232 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 309 (341)
Q Consensus 232 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~ 309 (341)
.+++.+++.+..+.-..+.+-.+++++|.+++-++|+.+++++|+++|++|+|+.+|+|.++++.|.++|+....+++
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 777778888877777788999999999999999999999999999999999999999999999999999987655544
No 12
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.94 E-value=4.1e-24 Score=203.11 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=189.5
Q ss_pred chhHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHH-H---hcCCCCCCCchhH---HHHHHHHHHHhhHH
Q 019428 21 NFSFALLGSSLVISSMASARLQFS---YGWYFTFIQGFVYLVLIY-L---QGFTTKQMMNPWK---TYVKLSAVLMGSHG 90 (341)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~~~~F~---~~~~lt~~q~~~~~~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 90 (341)
.+.-++.+=..+..+.++.|...+ .|..+.+.++....++.. + ++.+++.++.+++ .+..++++.+....
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~ 93 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVI 93 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443211 234567788777554322 1 2111111222343 44455555544556
Q ss_pred HHHHhhcCCchhHHHHHhhcchHHHHHHHHhhccc------ccccChhHHHHHHHHHHHHHHHhccCCCC----------
Q 019428 91 LTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGL------RRKYPAHEYVSALLLVVGLILFTLADAQT---------- 154 (341)
Q Consensus 91 l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~------~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~---------- 154 (341)
+.+.+++|++.+.+.++.++.|++++++++++ + |||.++++++++++.++|+.+....+...
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~--~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIF--RMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH--HhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 88999999999999999999999999999998 4 89999999999999999999876532110
Q ss_pred ----------C-CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHH-HHHHHHHHHhhcchHHHHHH
Q 019428 155 ----------S-PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVV-GLPMLIPPMLLTGELFKAWN 222 (341)
Q Consensus 155 ----------~-~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~ 222 (341)
. ......|++++++|++++|++++.+++..+++++ .....++...+ +.+...+....+++-...+.
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 0 1112569999999999999999999998777642 23334444333 33333333332221011110
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 223 SCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 223 ~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
...+...+..++ .++.+.+++.+|++++++.||..+++..+++|++++++|++++||++++.+++|.++++.|+++..
T Consensus 250 -~~~~~~~~~i~y-~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 250 -IHFDITLITIVT-MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred -eccchHHHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 011222233333 334456788999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCC
Q 019428 303 LPADDK 308 (341)
Q Consensus 303 ~~k~~~ 308 (341)
+.++++
T Consensus 328 ~~~~~~ 333 (358)
T PLN00411 328 WGKANE 333 (358)
T ss_pred hhhhhh
Confidence 655443
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=1.4e-22 Score=188.72 Aligned_cols=275 Identities=13% Similarity=-0.025 Sum_probs=192.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 019428 18 NGNNFSFALLGSSLVISSMASARLQ--FSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGS 95 (341)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~i~~~~~--F~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 95 (341)
+...+.+++....+++.+....|.. .--|..+.+.++....++......+++.++.+++..+.-++.++....+.+.+
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHH
Confidence 4455667777778888877666642 22478888999777654433221122212223333333344456666777777
Q ss_pred hcC----CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCC-------CCchHHHHH
Q 019428 96 LAF----LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS-------PNFSMIGVI 164 (341)
Q Consensus 96 l~~----is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~-------~~~~~~G~~ 164 (341)
++| ++.....++.++.|++++++++++ +|||+++++++++++.++|++++...+...+ ...+..|++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~--~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~ 159 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLF--NGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYG 159 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHH
Confidence 765 466677789999999999999999 8999999999999999999998875542110 013457999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 019428 165 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIG 244 (341)
Q Consensus 165 l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~ 244 (341)
++++|++++|.++++.||..++. ++....+ ..+...+.+....+++.. ...++..|..+++.++.+.++
T Consensus 160 ~~l~aa~~~A~~~v~~k~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 160 LAFIGAFIWAAYCNVTRKYARGK---NGITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC---CchhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875443 3333222 112222222222222210 111333444444555778889
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 245 QVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 245 ~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
+.++++++++.+|.++++..+++|++++++|++++||++++.+++|.++++.|+.+..+.+
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999998876544
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=7.1e-22 Score=184.37 Aligned_cols=278 Identities=12% Similarity=0.156 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH-HhhHHHHHHhhcC-
Q 019428 23 SFALLGSSLVISSMASARLQ--FSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKLSAVL-MGSHGLTKGSLAF- 98 (341)
Q Consensus 23 ~~~~~~~~~~~~~~i~~~~~--F~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~sl~~- 98 (341)
..+++...+++.+....|.. --.|..+++.++............+ ++.+++..+..+++. .....+.+.+++|
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVAR---PKVPLNLLLGYGLTISFGQFAFLFCAINFG 83 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777777666652 2347888888977644322211111 223455455555543 3455567788888
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHH
Q 019428 99 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGN 178 (341)
Q Consensus 99 is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v 178 (341)
++.+.+.++.++.|++++++++++ +|||+++++++++++.++|+.++...+.+. .+.+..|+.++++++++++.+.+
T Consensus 84 ~~a~~a~~l~~~~pi~~~ll~~~~--l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-~~~~~~G~~l~l~aal~~a~~~v 160 (299)
T PRK11453 84 MPAGLASLVLQAQAFFTIVLGAFT--FGERLQGKQLAGIALAIFGVLVLIEDSLNG-QHVAMLGFMLTLAAAFSWACGNI 160 (299)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHhHHHhccccCCC-cchhHHHHHHHHHHHHHHHHHHH
Confidence 688898999999999999999999 999999999999999999999887543221 23346799999999999999999
Q ss_pred HHHHHhhhCCCCChHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019428 179 LQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFG 256 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~s 256 (341)
++||..++.+........++....+....... ...+++..........++..| ..+++..+++.+++.+++.++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~ 240 (299)
T PRK11453 161 FNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE 240 (299)
T ss_pred HHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99987654332222333444444433222221 122232110001111123333 4556667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 257 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 257 a~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
|.+.+++..++|+++.++|++++||++++.+++|.++++.|+++..+.++
T Consensus 241 a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 241 TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999998877664
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.90 E-value=2.4e-21 Score=176.74 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=183.6
Q ss_pred ChhHHHHHHHHHHHHHHHH-HhcCCCCCCCchhHHHHHHHHH-HHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHh
Q 019428 44 SYGWYFTFIQGFVYLVLIY-LQGFTTKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF 121 (341)
Q Consensus 44 ~~~~~lt~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l 121 (341)
.-+..+.+.+++...++.. ....+ +.+.+++.++..+.+ .+.+..+.+.|++|++.+...++.++.|+++++++.+
T Consensus 16 ~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l 93 (260)
T TIGR00950 16 VPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDL 93 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHH
Confidence 4556777777666544322 22222 233455666666654 5788889999999999999999999999999999999
Q ss_pred hcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHH
Q 019428 122 IPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTV 201 (341)
Q Consensus 122 ~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
+ +|||++++++.+++++++|+.+....+. .+.+..|+.++++++++++.+.++.|+..++.+ .++.....+...
T Consensus 94 ~--~~e~~~~~~~~gi~i~~~Gv~li~~~~~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~ 167 (260)
T TIGR00950 94 M--GKERPRKLVLLAAVLGLAGAVLLLSDGN---LSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PELLQFTGWVLL 167 (260)
T ss_pred H--ccCCCcHHHHHHHHHHHHhHHhhccCCc---ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chHHHHHHHHHH
Confidence 9 8999999999999999999998865432 234678999999999999999999988765432 223334334556
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhC
Q 019428 202 VGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFT 280 (341)
Q Consensus 202 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~ 280 (341)
++.+.+.+.....++... .++..| ..++...+++.+++.++++++++.++.++++...++|+++.+++++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~ 241 (260)
T TIGR00950 168 LGALLLLPFAWFLGPNPQ------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILG 241 (260)
T ss_pred HHHHHHHHHHHhcCCCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666655443332111 122223 3455556777889999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHH
Q 019428 281 KPLTEQHGTGLLLIAMGI 298 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv 298 (341)
|++++.+++|.++++.|+
T Consensus 242 E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 242 ETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999986
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=9.6e-21 Score=176.17 Aligned_cols=268 Identities=13% Similarity=0.063 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHH--HhcCCC-CCCCchhHHHHHHHHHH-HhhHHHHHHhh-c
Q 019428 25 ALLGSSLVISSMASARLQ--FSYGWYFTFIQGFVYLVLIY--LQGFTT-KQMMNPWKTYVKLSAVL-MGSHGLTKGSL-A 97 (341)
Q Consensus 25 ~~~~~~~~~~~~i~~~~~--F~~~~~lt~~q~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~~sl-~ 97 (341)
.+....+++.+.+..|.. --.|..+++.+++...++.. ....++ .+.+.+++.....+.+. .....+.+.+. +
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQ 92 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444555566666653 23678888999887654322 221111 12233455566666654 45667778888 9
Q ss_pred CCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHH
Q 019428 98 FLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLG 177 (341)
Q Consensus 98 ~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~ 177 (341)
+++.+..+++.++.|+++++++. + +|||+++++++++++.++|+.+...++. .+.+..|+++.+++++++|.+.
T Consensus 93 ~~~a~~a~~l~~~~Pl~~~lla~-~--~~e~~~~~~~~~~~la~~Gv~ll~~~~~---~~~~~~G~l~~l~a~~~~a~~~ 166 (292)
T PRK11272 93 NVPSGIAAVVVATVPLFTLCFSR-L--FGIRTRKLEWLGIAIGLAGIVLLNSGGN---LSGNPWGAILILIASASWAFGS 166 (292)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH-H--hcccCchhHHHHHHHHHHhHHHHhcCcc---cccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 5 5899999999999999999998865322 1245689999999999999999
Q ss_pred HHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 019428 178 NLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFG 256 (341)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~s 256 (341)
+..||..++ ++.....+...++.+.+.+.....++... ...++..| ..+++..+++.+++.++++++++.+
T Consensus 167 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 167 VWSSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERLT----ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998875322 12334455555555555443333332110 01122233 3455556777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 257 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 257 a~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
+.+.++...++|+++.++|++++||++|+.+++|.++++.|+++.++.++
T Consensus 239 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 239 PALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998876443
No 17
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=1.1e-20 Score=175.96 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=197.6
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHH-H-hcCCCCCCCchhHHHHHHHHHHHhh
Q 019428 13 SQIDPNGNNFSFALLGSSLVISSMASARLQFS--YGWYFTFIQGFVYLVLIY-L-QGFTTKQMMNPWKTYVKLSAVLMGS 88 (341)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~F~--~~~~lt~~q~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (341)
++.|+ ..++.++.++...++.+..+.|+..+ -|..+.+.+++...++.. + +..+++.++.+++..+..++++...
T Consensus 6 ~~~~~-~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 6 RKLPV-WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred ccccc-chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 44444 66788899999999988888886432 356788888777654332 2 2111112234556666777777788
Q ss_pred HHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHH
Q 019428 89 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISG 168 (341)
Q Consensus 89 ~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~ 168 (341)
..+.+++++|++.+.++++..+.|+++++++ +||+++. ..+.+.++|+.++...+.+. .+.+..|+++.++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~------~~~~~~~--~~~~i~~~Gv~li~~~~~~~-~~~~~~G~ll~l~ 155 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS------SRRPVDF--VWVVLAVLGLWFLLPLGQDV-SHVDLTGAALALG 155 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh------cCChHHH--HHHHHHHHHHheeeecCCCc-ccCChHHHHHHHH
Confidence 8889999999999999999999999988654 3555444 44567789998765332211 2345789999999
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHH
Q 019428 169 ALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVS 247 (341)
Q Consensus 169 a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~ 247 (341)
+++++|.+.+..|+..+++ ++... .+...++...+.+.....++. . ..++..| ..+++..+++.+++.+
T Consensus 156 aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 156 AGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAGE-A-----LWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccCc-c-----cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876543 23333 344455554454433322210 0 0122223 2345666888899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 248 VLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 248 ~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+++++++.+|.++++...++|+++.++|++++||++++.+++|.++++.|++.+.+..++
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999866544
No 18
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8e-25 Score=192.44 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=232.6
Q ss_pred hHHHHHHHHHHHHH-HHhh--ccCChhHHHHHHHHHHHHHHHH-H----hcCC----CCCCCc---hhHHHHHHHHHHHh
Q 019428 23 SFALLGSSLVISSM-ASAR--LQFSYGWYFTFIQGFVYLVLIY-L----QGFT----TKQMMN---PWKTYVKLSAVLMG 87 (341)
Q Consensus 23 ~~~~~~~~~~~~~~-i~~~--~~F~~~~~lt~~q~~~~~~~~~-~----~~~~----~~~~~~---~~~~~~~~~~~~~~ 87 (341)
.|..++.+....++ ++.. ..-+-|.+.++.|+++...++. + +++. -+..+. ..++.+++++.+.+
T Consensus 35 ~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~ 114 (347)
T KOG1442|consen 35 LYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFIL 114 (347)
T ss_pred ceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeee
Confidence 33344444433433 3333 2457889999999999765432 2 1211 011122 35678899999999
Q ss_pred hHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHH
Q 019428 88 SHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMIS 167 (341)
Q Consensus 88 ~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l 167 (341)
++.++|++|+|+++++|.+-|+.+.+|++++++++ +|+|-+.....++++++.|-.+-+-.|+.. +..++.|.++.+
T Consensus 115 mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvl--lkqkTs~~~~~~C~lIi~GF~lGvdqE~~~-~~ls~~GvifGV 191 (347)
T KOG1442|consen 115 MISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVL--LKQKTSFFALGCCLLIILGFGLGVDQEGST-GTLSWIGVIFGV 191 (347)
T ss_pred ehhccceehhhcceEEEEeccchhhhHHHHhHHhh--cccccccccceeehhheehheecccccccc-CccchhhhHHHH
Confidence 99999999999999999999999999999999999 999999999999999999987765444322 356899999999
Q ss_pred HHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhh-chHHHHHHHHHHHHHHHHHH
Q 019428 168 GALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQ-HLYVYGVLVFEAMATFIGQV 246 (341)
Q Consensus 168 ~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~l~l~~~~~~l~~~ 246 (341)
.|.++-|+..++.||......+ ..+.+.+|++..+..+.+|.+.+.||+.+.+.+.+. ...+|..+.+++++++.-++
T Consensus 192 laSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 192 LASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999998876544332 347888999999999889988889998776654322 23467778888888887788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcccccccccch
Q 019428 247 SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFK 319 (341)
Q Consensus 247 ~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~ 319 (341)
...+-||.+||+|+++.++.|.+...++++.+++|.-+..-|-|-.+++.|...|++.|..+++++++.++++
T Consensus 271 vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~ 343 (347)
T KOG1442|consen 271 VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPA 343 (347)
T ss_pred eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCcc
Confidence 8888999999999999999999999999999999999999999999999999999999988877766555544
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.89 E-value=8.8e-21 Score=176.73 Aligned_cols=270 Identities=11% Similarity=0.080 Sum_probs=189.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHH-HH---hcC-CCCCC-CchhHHH--HHH-HHHHHhh
Q 019428 19 GNNFSFALLGSSLVISSMASARLQFS-YGWYFTFIQGFVYLVLI-YL---QGF-TTKQM-MNPWKTY--VKL-SAVLMGS 88 (341)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~i~~~~~F~-~~~~lt~~q~~~~~~~~-~~---~~~-~~~~~-~~~~~~~--~~~-~~~~~~~ 88 (341)
..++.+++.+...++.+.++.|...+ -|..+++.|++....+. .. ++- ++.++ ..+++.+ ... ++..+.+
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGN 86 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 45788888888899998877775433 35788888877755322 11 110 00000 1122322 223 3446788
Q ss_pred HHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHH
Q 019428 89 HGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISG 168 (341)
Q Consensus 89 ~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~ 168 (341)
..+.+.|+++++++...++.++.|++++++++++ +|||+++++++++++.++|++++...+. +.. .+.++
T Consensus 87 ~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~--l~E~~~~~~~~g~~l~~~Gv~li~~~~~----~~~----~~~l~ 156 (296)
T PRK15430 87 WLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF--LGERFRRMQWLAVILAICGVLVQLWTFG----SLP----IIALG 156 (296)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHcC----Ccc----HHHHH
Confidence 8999999999999999999999999999999999 9999999999999999999998864332 111 45777
Q ss_pred HHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHH
Q 019428 169 ALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVS 247 (341)
Q Consensus 169 a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~ 247 (341)
+++++|.+.+..|+..++. ..+......+..+.+.+...+. ..... ......+. .+..++..++.+.+++.+
T Consensus 157 aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 157 LAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIYLFAI--ADSST----SHMGQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHH--ccCCc----ccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998887753221 1112222334344333332211 11110 00011222 233444445567899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 248 VLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 248 ~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
++.++++.+|.+++...+++|++++++|++++||++++.+++|+++++.|+.+.....
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888776543
No 20
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.87 E-value=1.8e-21 Score=166.71 Aligned_cols=273 Identities=15% Similarity=0.186 Sum_probs=214.2
Q ss_pred HHhhccCChhHHHHHHHHHHHHH-HHHHhcCCCC-CCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHH
Q 019428 37 ASARLQFSYGWYFTFIQGFVYLV-LIYLQGFTTK-QMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLP 114 (341)
Q Consensus 37 i~~~~~F~~~~~lt~~q~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~ 114 (341)
+.+..+|+-...+.+.|.+++++ ++.++..+-. -|..+.+.|++++++....+..+.-++||.++|.|+++|..+.+.
T Consensus 28 Vls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~ 107 (309)
T COG5070 28 VLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIIL 107 (309)
T ss_pred eecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeeh
Confidence 44555899889999999888664 3444322110 123467889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCC---CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCC
Q 019428 115 VMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTS---PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETT 191 (341)
Q Consensus 115 v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~---~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~ 191 (341)
++..+..+ |+.|.+.....+.+++++.-.+..++|.+.. ...--.|++|+...++..+.+-...|+..+-.. ..
T Consensus 108 iAygEvl~--Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltN-f~ 184 (309)
T COG5070 108 IAYGEVLF--FGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTN-FK 184 (309)
T ss_pred hHhhHHHH--hcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccc-cc
Confidence 99999999 9999999999999999999999999886431 112236999999999999888777666554321 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019428 192 QMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAV 270 (341)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~ 270 (341)
.++.++|+++++.|.++...+..+|.. .-+... ..+.....+..++++++.-.++.-++++.+|+++.+++|.+++..
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws-~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp 263 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWS-PGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLP 263 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCC-cchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhCh
Confidence 478899999999999877655444421 111111 123344556777888766677888999999999999999999999
Q ss_pred HHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCccccc
Q 019428 271 TLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 271 ~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
..+.|.++||+|.+...+..+.+-+....+|...|.+++++.+
T Consensus 264 ~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 264 IALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred HHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998876554433
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.83 E-value=1.7e-18 Score=160.11 Aligned_cols=209 Identities=11% Similarity=0.060 Sum_probs=156.0
Q ss_pred HHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHH
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMI 161 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~ 161 (341)
++.......+.+.++++.+.+....+.++.|++++++++++ +|||+++++++++.+++.|+.+....+.+ +.+..
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~--~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---~~~~~ 144 (281)
T TIGR03340 70 AVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT--LGETLSPLAWLGILIITLGLLVLGLSRFA---QHRRK 144 (281)
T ss_pred HHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccccc---ccchh
Confidence 44567888899999999999999999999999999999999 99999999999999999999988754422 23457
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhCCCC-ChHHHHHHHHHHH-HHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHH
Q 019428 162 GVIMISGALIMDSFLGNLQEAIFTMNPET-TQMEMLFCSTVVG-LPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 239 (341)
Q Consensus 162 G~~l~l~a~~~~al~~v~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~ 239 (341)
|+.+.++++++++.+.+..|+..++.++. +......+..... .++..+. ...++. ... ......+..++..++
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~--~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLY-LKRHGR--SMF--PYARQILPSATLGGL 219 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHH-HHHhcc--chh--hhHHHHHHHHHHHHH
Confidence 88899999999999998876643322111 1111122222211 2222111 111110 000 011123445666678
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHH
Q 019428 240 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 240 ~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~ 300 (341)
++.+++.++++++++.++.+.+....++|+++.++|++++||++++.+++|.++++.|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 8889999999999999999999999999999999999999999999999999999999875
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.77 E-value=9e-16 Score=141.27 Aligned_cols=214 Identities=15% Similarity=0.191 Sum_probs=160.8
Q ss_pred HHHHHH-HHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHH-hhcccccccChhHHHHHHHHHHHHHHHhccCCCC
Q 019428 77 TYVKLS-AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGA-FIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT 154 (341)
Q Consensus 77 ~~~~~~-~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~-l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~ 154 (341)
.....+ +.......+.+.++++++.+..+++.++.|+++.++++ ++ +|||++++++.++++..+|+.++...+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLL--LGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 344444 44577888899999999999999999999999999997 66 699999999999999999999998766532
Q ss_pred CCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHH-HHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHH-H
Q 019428 155 SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF-CSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-G 232 (341)
Q Consensus 155 ~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~ 232 (341)
..+ ...|+.+.+++++++|++.+.+|+.. +. ++..... +... ........... .+.. .......+ .
T Consensus 149 ~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-----~~~~~~~~~~ 216 (292)
T COG0697 149 GIL-SLLGLLLALAAALLWALYTALVKRLS-RL---GPVTLALLLQLL-LALLLLLLFFL-SGFG-----APILSRAWLL 216 (292)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHHHHHHHHH-HHHHHHHHHHh-cccc-----ccCCHHHHHH
Confidence 111 47899999999999999999998876 22 2333333 2222 11111111111 1000 01111223 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 233 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 233 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
......+.+.+++.+++..+++.++...++...++|+.+++++++++||+++..+++|.++++.|+.+....
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 333444555578999999999999999999999999999999999999999999999999999999998865
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.75 E-value=8.3e-17 Score=145.35 Aligned_cols=214 Identities=18% Similarity=0.268 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCC
Q 019428 74 PWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ 153 (341)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~ 153 (341)
+..++...+++|+..+.+.+.++++++.+++|+.++++.++++++++++ +|||.+++||.++.+.++|++++..++..
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~--L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL--LKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH--HHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4566777799999999999999999999999999999999999999999 99999999999999999999998776543
Q ss_pred CC-------------CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhc-chHHH
Q 019428 154 TS-------------PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT-GELFK 219 (341)
Q Consensus 154 ~~-------------~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 219 (341)
.. ......|+.+++.+++++|+..++.||++|+.+ .+.+........+|.++.++..... ++-..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 20 123579999999999999999999999998754 3444444444555555554433222 21100
Q ss_pred HHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHH
Q 019428 220 AWNSCS-QHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 294 (341)
Q Consensus 220 ~~~~~~-~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~li 294 (341)
...+.+ .++..|.. .+..+++-+..-..+|+.+...-+....+.-+++.++++++||.++|....+|..++
T Consensus 173 ~~g~f~G~~~~~~~~----i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIV----IFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 000111 12223322 244455667777899999999999999999999999999999999999999998653
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.74 E-value=1.6e-15 Score=138.36 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=164.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHH-HH-H--hcCCC----C-C-C-Cch-hHHHHHHHHHHH
Q 019428 20 NNFSFALLGSSLVISSMASARLQF-SYGWYFTFIQGFVYLVL-IY-L--QGFTT----K-Q-M-MNP-WKTYVKLSAVLM 86 (341)
Q Consensus 20 ~~~~~~~~~~~~~~~~~i~~~~~F-~~~~~lt~~q~~~~~~~-~~-~--~~~~~----~-~-~-~~~-~~~~~~~~~~~~ 86 (341)
+++.+++++..+++.+.++.|+-. -.|..+++.+++...++ .. . ++.++ + + . +.+ +......+++.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLLKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 367788899999999988888622 35678889998875543 21 1 21110 0 0 0 111 112334466678
Q ss_pred hhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHH
Q 019428 87 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMI 166 (341)
Q Consensus 87 ~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~ 166 (341)
.+..+.+.|+++++++.++++.++.|++++++++++ +|||+++++++++++.++|++++...+. +.. .++
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~--l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----~~~----~~~ 151 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVF--LKERISRFQFIAVIIATLGVISNIVLKG----SLP----WEA 151 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHcC----Cch----HHH
Confidence 888999999999999999999999999999999999 9999999999999999999998764321 111 356
Q ss_pred HHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhch-HHHHHHHHHHHHHHHHH
Q 019428 167 SGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHL-YVYGVLVFEAMATFIGQ 245 (341)
Q Consensus 167 l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~-~~~~~l~l~~~~~~l~~ 245 (341)
+++++++|.+.+..|+..++ +..+...+ .....|...+.....+. .. .. ..++ ..|..++..++.+.+++
T Consensus 152 l~aa~~~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDF-AT-VQ--QTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhcc-Cc-cc--ccCchhHHHHHHHHHHHHHHHH
Confidence 78899999999998875432 12222222 22222222221111111 00 00 0111 23444445556688999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 019428 246 VSVLSLIALFGAATTAMVTTARKAVTLLLSYLI 278 (341)
Q Consensus 246 ~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~ 278 (341)
.+++.++++.+|.+.++..+++|+++.++|.++
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999764
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.73 E-value=1.5e-16 Score=133.57 Aligned_cols=142 Identities=17% Similarity=0.308 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhC----CCCChHHHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHhh-----chHH
Q 019428 162 GVIMISGALIMDSFLGNLQEAIFTMN----PETTQMEMLFCSTVVGLPMLIPPMLLTGELFK--AWNSCSQ-----HLYV 230 (341)
Q Consensus 162 G~~l~l~a~~~~al~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~~~~-----~~~~ 230 (341)
|+++++.|.++.|+++++.|+.+++. .+.++.++++|+++.+.+.++|..+..++... ....... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999988874 45788999999999999998887655443221 1111111 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 231 YGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 231 ~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
+..++.+++.++..+.+.+.+++++||+++++++++|++..+++|+++|||++|+.+++|+++++.|+.+|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5567777888888899999999999999999999999999999999999999999999999999999999985
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.5e-15 Score=139.88 Aligned_cols=226 Identities=19% Similarity=0.217 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCC--
Q 019428 76 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQ-- 153 (341)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~-- 153 (341)
.+....+++|++.+-+.+.++.+.+.+++++....+...|+++..++ +|||.+++||.++++.++|++++.....+
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~--L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLI--LRRKLSRLQWMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 34556678899999999999999999999999999999999999999 99999999999999999999999833221
Q ss_pred -C----CCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHhhc
Q 019428 154 -T----SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLT-GELFKAWNSCSQH 227 (341)
Q Consensus 154 -~----~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~ 227 (341)
. ...+.+.|....+.+++.+|+..++.||++++.. .+.+-.......+|.++.+...+.. ++-.....+.+.+
T Consensus 171 ~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~ 249 (345)
T KOG2234|consen 171 GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGY 249 (345)
T ss_pred CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccc
Confidence 1 1245789999999999999999999999998653 3333333333444555555443332 2211111112222
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 228 L-YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 228 ~-~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
. ..|..++. .+++-++....+|+.+...-+....+-.+++.+.|+.+||.++|....+|..+++.++.+|...+.
T Consensus 250 s~~vw~vVl~----~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 250 SSIVWLVVLL----NAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred cHHHHHHHHH----HhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 2 23433333 344556666788888888888888888899999999999999999999999999999999996555
Q ss_pred CC
Q 019428 307 DK 308 (341)
Q Consensus 307 ~~ 308 (341)
+.
T Consensus 326 ~~ 327 (345)
T KOG2234|consen 326 RD 327 (345)
T ss_pred cc
Confidence 43
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.68 E-value=6.4e-14 Score=130.16 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHHHH-HHHH-hcCCCCCCCchhHHHHHH----HHHHHhhHHHHH
Q 019428 22 FSFALLGSSLVISSMASARL--QFSYGWYFTFIQGFVYLV-LIYL-QGFTTKQMMNPWKTYVKL----SAVLMGSHGLTK 93 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~--~F~~~~~lt~~q~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 93 (341)
+.+++.+...++.+.+..|. +++.++.. .+..... +..+ ..++.++ .+.+..+.. ++.......+.+
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~g~~~~~~~---~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIGGGPYSQTL---GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccCCCHHHHHH---HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhhhhhHH
Confidence 45677777888888766654 34444443 1222221 1111 1111111 121222332 344667778999
Q ss_pred HhhcCCchhHHHHHhh-cchHHHHHHHHhhcccccccChhH----HHHHHHHHHHHHHHhccCCCCCC----CchHHHHH
Q 019428 94 GSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHE----YVSALLLVVGLILFTLADAQTSP----NFSMIGVI 164 (341)
Q Consensus 94 ~sl~~is~~~~~l~ks-~~pv~v~ll~~l~~~~~~k~s~~~----~~~l~l~~~Gv~l~~~~~~~~~~----~~~~~G~~ 164 (341)
.+.++++++.+..+-+ ..++++.+.+.++ +|||.++++ +++++++++|+++....+.+... .+...|++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~--f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~ 155 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIV--FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGIL 155 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHH
Confidence 9999999999987777 7778889999999 999999999 99999999999988765433211 22368999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHH
Q 019428 165 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFC---STVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 241 (341)
Q Consensus 165 l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~ 241 (341)
+.++|.++++.+.+..|+. + .++.+..+. ...++.....+.. ... +.+ .....+..++ .++..
T Consensus 156 ~~l~sg~~y~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~-~~~---~~~----~~~~~~~~~~-~Gi~~ 221 (290)
T TIGR00776 156 LLLMSTIGYLVYVVVAKAF--G---VDGLSVLLPQAIGMVIGGIIFNLGH-ILA---KPL----KKYAILLNIL-PGLMW 221 (290)
T ss_pred HHHHHHHHHHHHHHHHHHc--C---CCcceehhHHHHHHHHHHHHHHHHH-hcc---cch----HHHHHHHHHH-HHHHH
Confidence 9999999999999888754 2 234444322 2222222222111 000 000 1112333333 45556
Q ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhh----HHHHHHHHHHHHHhccC
Q 019428 242 FIGQVSVLSLIA-LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHG----TGLLLIAMGITLKLLPA 305 (341)
Q Consensus 242 ~l~~~~~~~~i~-~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~----iG~~lil~Gv~~y~~~k 305 (341)
.+++.+++...+ +.++.++++...++|+.+.+.+++++||+.++.++ +|.++++.|+.+-...|
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 888999999999 99999999999999999999999999999999999 99999999998876543
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1e-15 Score=140.88 Aligned_cols=218 Identities=12% Similarity=0.202 Sum_probs=172.5
Q ss_pred HHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCC----CCCch
Q 019428 84 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT----SPNFS 159 (341)
Q Consensus 84 ~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~----~~~~~ 159 (341)
+.+.+....|.||.|++++..+++.+++-+||.+++.++ -.||+++.+.+++++.+.|+++++.+|... .+...
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if--~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ 245 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF--PVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP 245 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc--CcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence 346777889999999999999999999999999999999 789999999999999999999999886532 23456
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhCC-CCChHHHHH-HHHHHHHHHHHHHHhhcchH-HHHHHHHhhchHHHHHHHH
Q 019428 160 MIGVIMISGALIMDSFLGNLQEAIFTMNP-ETTQMEMLF-CSTVVGLPMLIPPMLLTGEL-FKAWNSCSQHLYVYGVLVF 236 (341)
Q Consensus 160 ~~G~~l~l~a~~~~al~~v~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~l~l 236 (341)
..|.++++++++.||.|.++.||-..+++ +.+ +++.+ |..++...++.|.+++-.-. .+.++. .....+...++.
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~iL~~~~~e~F~l-P~~~q~~~vv~~ 323 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLIILDFFGEERFEL-PSSTQFSLVVFN 323 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHHHHHhccCcccC-CCCceeEeeeHh
Confidence 89999999999999999999988766653 444 44443 56666666666543321100 111110 111122233455
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 237 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 237 ~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
+++.+++.-++|-++.-.++|+++++..++.-.++++..+++-|+++|+.+++|.+.+++|....++..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 667888888999999999999999999999999999999999999999999999999999999888754
No 29
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.66 E-value=1.6e-13 Score=123.32 Aligned_cols=277 Identities=13% Similarity=0.110 Sum_probs=193.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH---H---hcCCCC-C-CCch--hHHHHHHHHHHH
Q 019428 17 PNGNNFSFALLGSSLVISSMASARLQFSYGWYFTFIQGFVYLVLIY---L---QGFTTK-Q-MMNP--WKTYVKLSAVLM 86 (341)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~~~~~---~---~~~~~~-~-~~~~--~~~~~~~~~~~~ 86 (341)
....|+.+.+++...++..+.|.|+--+-|-+--..|..+++.... + ++.+.- . .+.| +..+...+++..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3457899999999999999999998778888888888888664221 1 222211 0 1222 222333345556
Q ss_pred hhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHH
Q 019428 87 GSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMI 166 (341)
Q Consensus 87 ~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~ 166 (341)
.+...-.+|-+.=.+--+.+-....|++.++++.++ +|||.++.|++++.++.+||..-.+..+ +..+..+.++
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf--lkErls~~Q~iAV~lA~~GV~~~~~~~g----~lpwval~la 157 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF--LKERLSRLQWIAVGLAAAGVLIQTWLLG----SLPWVALALA 157 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHcC----CCcHHHHHHH
Confidence 666666666666444445566777899999999999 9999999999999999999999887654 3455555544
Q ss_pred HHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHh-hchHHHHHHHHHHHHHHHHH
Q 019428 167 SGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHLYVYGVLVFEAMATFIGQ 245 (341)
Q Consensus 167 l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~l~l~~~~~~l~~ 245 (341)
+.+++|...-|++ + .++.+-...-.++-.|..+...+..++-.+ +.. .++..+..+...+..+++.-
T Consensus 158 ----~sf~~Ygl~RK~~-~----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL 225 (293)
T COG2962 158 ----LSFGLYGLLRKKL-K----VDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPL 225 (293)
T ss_pred ----HHHHHHHHHHHhc-C----CchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHH
Confidence 4677887554332 2 233333333333333333222221111111 112 34455666777888888999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCccc
Q 019428 246 VSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 246 ~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~ 311 (341)
.++..+-++.+=.+.++..+++|....+++++++||+++..+....+++-.|+.+|.....++.+|
T Consensus 226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999876554433
No 30
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.65 E-value=1.9e-14 Score=127.60 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=171.7
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCC---
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT--- 154 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~--- 154 (341)
+++.+++...+..+.|.+|.+++.+.+|++|-...+||-+++..+ ++++++.+||+++..+.+|++++...|...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~--Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMF--LNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHH--HhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456788998999999999999999999999999999999999999 999999999999999999999998875432
Q ss_pred ---CCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHH----HHh-hcch---------H
Q 019428 155 ---SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIP----PML-LTGE---------L 217 (341)
Q Consensus 155 ---~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~g~---------~ 217 (341)
+.+..+.|+.+++.|-+.-|.+.++.||.++++. .+|.+..-|..+++..++.. ... -.|+ +
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~ 245 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL 245 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence 1245689999999999999999999999888753 66787777666665433221 111 1121 1
Q ss_pred HH---HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHH
Q 019428 218 FK---AWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 294 (341)
Q Consensus 218 ~~---~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~li 294 (341)
.+ .+......|.....+....+.-++.|..-....|..||+|-.+.-.+|..+.-+++..+..|.+...|+.|.++.
T Consensus 246 eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliL 325 (372)
T KOG3912|consen 246 EDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLIL 325 (372)
T ss_pred hhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111223322222222222233345556889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 019428 295 AMGITLKLLP 304 (341)
Q Consensus 295 l~Gv~~y~~~ 304 (341)
+.|+++|+-.
T Consensus 326 i~Gi~lY~~i 335 (372)
T KOG3912|consen 326 IMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.9e-17 Score=144.82 Aligned_cols=268 Identities=15% Similarity=0.166 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH-HHHHHhcCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHH
Q 019428 26 LLGSSLVISSMASARLQFSYGWYFTFIQGFVYL-VLIYLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQ 104 (341)
Q Consensus 26 ~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~ 104 (341)
+|+++.-..+.-.++-+-+.|..=+++....-. +-..+..||.+..+..|+.|+.+++...-++.+--.|+||++....
T Consensus 28 L~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi 107 (336)
T KOG2766|consen 28 LLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSI 107 (336)
T ss_pred HHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHH
Confidence 333333333333344345666665555522211 1122234555455678899999988877777777889999999999
Q ss_pred HHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCC----CCCchHHHHHHHHHHHHHHHhHHHHH
Q 019428 105 LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT----SPNFSMIGVIMISGALIMDSFLGNLQ 180 (341)
Q Consensus 105 ~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~----~~~~~~~G~~l~l~a~~~~al~~v~~ 180 (341)
+++.+...+.+++++|++ +|.|+.+-++.+++++..|++++..+|... .+++...|+.+.++++-++|..++.+
T Consensus 108 ~lLDcwaip~v~~lsw~f--LktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~E 185 (336)
T KOG2766|consen 108 MLLDCWAIPCVLVLSWFF--LKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSE 185 (336)
T ss_pred HHHHHhhhHHHHHHHHHH--HHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccH
Confidence 999999999999999999 999999999999999999999998887543 24567899999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 019428 181 EAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIALFGAATT 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~ 260 (341)
|.+.++ .+..+++-...++|++...+=.+.+.. +. ...+.+.....++. ...+-++.+.+.-..+|..||+..
T Consensus 186 Eflvkn---~d~~elm~~lgLfGaIIsaIQ~i~~~~--~~-~tl~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~ 258 (336)
T KOG2766|consen 186 EFLVKN---ADRVELMGFLGLFGAIISAIQFIFERH--HV-STLHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMF 258 (336)
T ss_pred HHHHhc---CcHHHHHHHHHHHHHHHHHHHHhhhcc--ce-eeEeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEE
Confidence 887665 345677766666665544321111110 00 00000111112222 233334555556688999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 261 AMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 261 si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
++.-...+..++++ ..||-+++|...+..+.+..|.++|...
T Consensus 259 nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 259 NLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred EhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 99999999999998 7788889999999999999999999543
No 32
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.60 E-value=8.9e-15 Score=130.71 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=139.8
Q ss_pred CchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCC-----------------------C
Q 019428 99 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQT-----------------------S 155 (341)
Q Consensus 99 is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~-----------------------~ 155 (341)
+++|.++..|+..++++++.++.+ ++||++..|+++.+++..|+.....+|.+. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~--~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLA--AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccc--cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 578999999999999999999999 899999999999999999998644433210 1
Q ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHH-----hh-cchHHHHHHHHhhchH
Q 019428 156 PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPM-----LL-TGELFKAWNSCSQHLY 229 (341)
Q Consensus 156 ~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~-~g~~~~~~~~~~~~~~ 229 (341)
.++.+.|....+.++.++++..+++|+..++++ . ++|.+.++.+...+.. .. .++......+...+|.
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~-~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD-T-----MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPT 153 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC-C-----chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCch
Confidence 134678888899999999999999999766432 1 2344333333332211 11 1111111111112232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHH
Q 019428 230 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 301 (341)
Q Consensus 230 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y 301 (341)
....+ .+..++++.+..+++|+.|+++.+++.+++++++.++|+++|||++++.+++|..+++.|+.+|
T Consensus 154 ~~~~~---~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 154 AVWIV---GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHH---HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22112 2444667788899999999999999999999999999999999999999999999999998765
No 33
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.52 E-value=2.6e-11 Score=106.62 Aligned_cols=255 Identities=13% Similarity=0.061 Sum_probs=182.4
Q ss_pred HHhhccCCh--hHHHHHHHHHHHHHHH--HHhcCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcch
Q 019428 37 ASARLQFSY--GWYFTFIQGFVYLVLI--YLQGFTTKQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKV 112 (341)
Q Consensus 37 i~~~~~F~~--~~~lt~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~p 112 (341)
-+.|.-||. +...|..+.....+.. ..|-++.+..+.+|+..+..+.....++.+-+.|++.++.+.+.-+-.+.|
T Consensus 29 s~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GP 108 (292)
T COG5006 29 SFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGP 108 (292)
T ss_pred HHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccH
Confidence 566666763 4577777755544322 234344333456777777888888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCCh
Q 019428 113 LPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQ 192 (341)
Q Consensus 113 v~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~ 192 (341)
+.+.+++ .|| .++.+.+.+.+.|+.+..-...+ ..+.|..|..+++.+..||+.|.+..||.-+..+ .
T Consensus 109 L~vA~~~------sRr--~~d~vwvaLAvlGi~lL~p~~~~-~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~---g 176 (292)
T COG5006 109 LAVALLS------SRR--LRDFVWVALAVLGIWLLLPLGQS-VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH---G 176 (292)
T ss_pred HHHHHHh------ccc--hhhHHHHHHHHHHHHhheeccCC-cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC---C
Confidence 9877642 333 34566777888888877643322 2356899999999999999999999888764221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019428 193 MEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY-GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVT 271 (341)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ 271 (341)
.+-+-....+++...+|+.....+ .. ..+|... ..+......+++-|.+-...+++.++.+.++...++|.++
T Consensus 177 ~~g~a~gm~vAaviv~Pig~~~ag-~~-----l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~a 250 (292)
T COG5006 177 TAGVAVGMLVAALIVLPIGAAQAG-PA-----LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALA 250 (292)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcc-hh-----hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHH
Confidence 222333344555555554332211 00 1244433 2344455667778888999999999999999999999999
Q ss_pred HHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCc
Q 019428 272 LLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 309 (341)
Q Consensus 272 ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~ 309 (341)
.+.|++++||.+|+.||.|+..++.+..-.++.-+|+.
T Consensus 251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 99999999999999999999999999887776655544
No 34
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.39 E-value=1.8e-13 Score=120.77 Aligned_cols=214 Identities=11% Similarity=0.109 Sum_probs=158.8
Q ss_pred HHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCC------CCC
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA------QTS 155 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~------~~~ 155 (341)
++.-+.+..+.++|++|++.+-++++..++|++|.++++++ +||+++..+.++..+.+.||+++...+. +..
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~--LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAF--LKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE 181 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHH--HcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence 56667778899999999999999999999999999999999 9999999999999999999998764321 110
Q ss_pred ----CCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHH
Q 019428 156 ----PNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVY 231 (341)
Q Consensus 156 ----~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 231 (341)
.+.+..|...++.+++..|-..+..+++-++. +..-.+.|-..+++...++.+..-|+. +.. ....-|
T Consensus 182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP-~cgkdr 253 (346)
T KOG4510|consen 182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIGAV----QLP-HCGKDR 253 (346)
T ss_pred ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhccce----ecC-ccccce
Confidence 13456787888888777766666665553432 222223344555655555443333431 110 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 232 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 232 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
..++-.++.++++|++....+++=-|-..++..+..-+++.+..+++|||-+|++.|.|+++++.+..+....|
T Consensus 254 ~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 254 WLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred EEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 22333467779999999999999888889999999999999999999999999999999999999998876543
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.99 E-value=4.1e-09 Score=84.48 Aligned_cols=123 Identities=11% Similarity=0.162 Sum_probs=92.0
Q ss_pred HHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHH
Q 019428 172 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLY-VYGVLVFEAMATFIGQVSVLS 250 (341)
Q Consensus 172 ~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~l~l~~~~~~l~~~~~~~ 250 (341)
++|.+.+..|+..++ .++.+..++....+.+ .++.....+... ....++. ....+....+++.+++.+++.
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 577888888887765 4578888888777766 443333222111 0111222 223344444556888999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 251 LIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 251 ~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
++++.++...++...++|+++.++++++++|++++.+++|+++++.|+.+.+
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.98 E-value=1.4e-09 Score=86.03 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHH
Q 019428 163 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 242 (341)
Q Consensus 163 ~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 242 (341)
.++++++++++++..++.|.-.+. .||.-.++--+.....++....+.+|...... ..++..|.++.++++.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~---~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGG---EIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceeccc---ccCcceehhhhHHHHHHH
Confidence 468899999999999887665443 33443344444444444444445566532110 124556778888999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 243 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
++-.++|.++++-.+....-+.-+.+++++++|+++++|++|..+++|+.++..|..+.+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999999987654
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.81 E-value=4.2e-07 Score=84.72 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 237 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~ 237 (341)
....|.++.++++++++...+..|.. . +.++.+..++-..++.+.+.+.....++..+... ...++..+......
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcCHHHHHHHHHH
Confidence 35689999999999999999888543 2 2568899999888887766654433333211111 11122222223344
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 238 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 238 ~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
++..+..+.+++++++++++..+++.....|+++.+++.++++|+++..+++|+++.+.|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45555677889999999999999999999999999999999999999999999999999998754
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.77 E-value=6.3e-07 Score=81.66 Aligned_cols=138 Identities=7% Similarity=0.055 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHh-hch-HHHHHHHHHH
Q 019428 161 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCS-QHL-YVYGVLVFEA 238 (341)
Q Consensus 161 ~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~-~~~~~l~l~~ 238 (341)
.|..++++++++++...+..|. ..+ .++.+..++-..++.+.+.+.....++..+...... .+. ..+..+.+.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 3889999999999999998875 332 578999998888887766554333332111001111 011 1222344445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
+.....+.+++.+++++++.++++.....|+++.+++.++++|+++..+++|+.+.+.|+.+-.
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5556777889999999999999999999999999999999999999999999999999987553
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.63 E-value=1.4e-07 Score=80.43 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=149.8
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCC
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPN 157 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~ 157 (341)
-.|.+++..+...+-..+++.++.+-++-+.+|.-.|+.+++++. +++|+...++++.++++.|+++.++.|.+. .
T Consensus 56 taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV--L~D~~~~~kIlaailAI~GiVmiay~DN~~--a 131 (290)
T KOG4314|consen 56 TAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIV--LGDRFMGFKILAAILAIGGIVMIAYADNEH--A 131 (290)
T ss_pred ecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH--hccchhhhhHHHHHHHhCcEEEEEeccchh--h
Confidence 345566677777888889999999999999999999999999999 999999999999999999999999887542 4
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhC--CCCChH-HHHHHHHH--HHHHHHHHHHhhcchHHHHHHHHhhchHHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMN--PETTQM-EMLFCSTV--VGLPMLIPPMLLTGELFKAWNSCSQHLYVYG 232 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~--~~~~~~-~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 232 (341)
..+.|+.+++.|+.+.|+|-+..|+....- ++...+ .-+-+.++ .+.|-+ .+.++| .+.++.....| |.
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~l--IL~~T~--VE~~qsFA~~P--WG 205 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPAL--ILAFTG--VEHLQSFAAAP--WG 205 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHH--HHHHhc--hHHHHHHhhCC--ch
Confidence 579999999999999999999998876532 111111 11112222 122211 122344 22232111122 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 233 VLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 233 ~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
.+......+...+...+..+..+.|...++-..........+..++-+-.++.....|.+++..|.++....
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 332222222233455667788888888777666655566667766666678889999999999998876543
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.62 E-value=6.2e-06 Score=74.95 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=141.0
Q ss_pred HHHHHHHHhhHHHHHHhhcCCchhHHH-HHhhcchHHHHHHHHhhcccccccChhHH----HHHHHHHHHHHHHhccCCC
Q 019428 79 VKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQ 153 (341)
Q Consensus 79 ~~~~~~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v~ll~~l~~~~~~k~s~~~~----~~l~l~~~Gv~l~~~~~~~ 153 (341)
+.-+++.......++.|++++.+|... +......+.+.+.++++ |+|-.+..++ ++++++++|+.+.++.|.+
T Consensus 49 ~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~--fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 49 FLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLF--FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhh--cCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 344667788889999999997765443 22234556678899999 8998887775 5899999999999998875
Q ss_pred CCC----CchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHhhch
Q 019428 154 TSP----NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIP-PMLLTGELFKAWNSCSQHL 228 (341)
Q Consensus 154 ~~~----~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~~~~~~ 228 (341)
.+. ++...|+..++.+.+.+..|.+..+- .+.++++..+-.++ +...... .....++ . ..+.
T Consensus 127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-----~~~~~~~~~lPqai-Gm~i~a~i~~~~~~~-----~--~~~k 193 (269)
T PF06800_consen 127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-----FHVSGWSAFLPQAI-GMLIGAFIFNLFSKK-----P--FFEK 193 (269)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHh-----cCCChhHhHHHHHH-HHHHHHHHHhhcccc-----c--cccc
Confidence 432 24567999999999999998877543 12455554443222 2211111 1111111 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchh----hhHHHHHHHHHHHH
Q 019428 229 YVYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQ----HGTGLLLIAMGITL 300 (341)
Q Consensus 229 ~~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~----~~iG~~lil~Gv~~ 300 (341)
..|.-+ +.++.=.+++.+++...++.|..+.=..+.+..+++.+.|++++||+=+.+ .++|.++++.|..+
T Consensus 194 ~~~~ni-l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 KSWKNI-LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred chHHhh-HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 223223 234444688899999999999999999999999999999999999976654 56788888887653
No 41
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.59 E-value=8.5e-07 Score=82.65 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=122.8
Q ss_pred HHHHH-HHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCCC
Q 019428 79 VKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSPN 157 (341)
Q Consensus 79 ~~~~~-~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~ 157 (341)
+..|+ ++..+..++..|+.+.+.+..+-+-+...++.++++..+ +|||.+++++.+..+++.|..++....++.+..
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~--l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~ 130 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFF--LGEKLTRRDIVGCALIILGSVLIVIFAPKEEPI 130 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHH--hcccchHhHHhhHHHHHhhheeeEEeCCCCCCc
Confidence 34454 357777899999999999999988999999999999999 999999999999999999998776544332211
Q ss_pred ch------------HHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHH---HHHHHHHHHHHhhcchHHHHH-
Q 019428 158 FS------------MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCST---VVGLPMLIPPMLLTGELFKAW- 221 (341)
Q Consensus 158 ~~------------~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~~~- 221 (341)
.+ ..-+........ -.+..... +++++.+ .+.|.. .++....+..=.+..-+.+..
T Consensus 131 ~t~~~l~~~~~~~~fl~y~~~~~~~~-~~L~~~~~----~r~g~~~---i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~ 202 (300)
T PF05653_consen 131 HTLDELIALLSQPGFLVYFILVLVLI-LILIFFIK----PRYGRRN---ILVYISICSLIGSFTVLSAKAISILIKLTFS 202 (300)
T ss_pred CCHHHHHHHhcCcceehhHHHHHHHH-HHHHHhhc----chhcccc---eEEEEEEeccccchhhhHHHHHHHHHHHHhc
Confidence 11 111111111111 11111111 1211111 111211 222111100000000000000
Q ss_pred -HHHhhchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHhhCC--Ccch----hhhHHHH
Q 019428 222 -NSCSQHLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTA-MVTTARKAVTLLLSYLIFTK--PLTE----QHGTGLL 292 (341)
Q Consensus 222 -~~~~~~~~~~~~l~l~~~~~~l~~-~~~~~~i~~~sa~t~s-i~~~l~~v~~ills~~~f~e--~~t~----~~~iG~~ 292 (341)
+....+|..|..++.. +.+.+.| .+.+.++++++++... +....-...+++-|.++|+| ..++ ....|..
T Consensus 203 g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~ 281 (300)
T PF05653_consen 203 GDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFL 281 (300)
T ss_pred CchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 0011244455444433 3345556 4568999999987533 33334556888899999996 5566 4567788
Q ss_pred HHHHHHHHHhccC
Q 019428 293 LIAMGITLKLLPA 305 (341)
Q Consensus 293 lil~Gv~~y~~~k 305 (341)
+++.|+.+-+..|
T Consensus 282 ~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 282 IIIIGVFLLSSSK 294 (300)
T ss_pred HHHHhhheeeccC
Confidence 8888887765433
No 42
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.59 E-value=3.1e-07 Score=73.07 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHH-HhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 73 NPWKTYVKLSAVL-MGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
.++......+++. ..+..+.+.|+++.+ +....+.++.|++++++++++ +|||++++++.+++++++|++++.++|
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~--~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF--FKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 4455455556655 488899999999999 577799999999999999999 999999999999999999999999887
Q ss_pred CC
Q 019428 152 AQ 153 (341)
Q Consensus 152 ~~ 153 (341)
.+
T Consensus 109 ~~ 110 (113)
T PF13536_consen 109 LT 110 (113)
T ss_pred cc
Confidence 54
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.51 E-value=2.4e-06 Score=78.97 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHH
Q 019428 163 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 242 (341)
Q Consensus 163 ~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 242 (341)
+.+.+++++++|...+..|+..++. ++. .++....+.+.+.|....... ...+. ......+..+...++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF--LWWALLAHSVLLTPYGLWYLA-QVGWS--RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH--HHHHHHHHHHHHHHHHHHhcc-cCCCC--CcchhhHHHHHHHHHHHH
Confidence 4577889999999999988765442 233 344444455555543322110 00000 011223444555566667
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 243 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
..+.+.+.+.++.++...+++....|+++.+++.++++|+++..+++|+.+++.|+.+-..
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999999999999999999999999999999999999987654
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.45 E-value=1.4e-05 Score=65.02 Aligned_cols=121 Identities=13% Similarity=0.144 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHH
Q 019428 161 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 240 (341)
Q Consensus 161 ~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~ 240 (341)
.|+++++.+.++.+...+..|+-.++.++.+.. .. .. ..+ . ...+|.. .+++..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~~-~~---~~~----~-----------~~~~p~~--~i~lgl~~ 57 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---WD-FI---AAL----L-----------AFGLALR--AVLLGLAG 57 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---hH-HH---HHH----H-----------HHhccHH--HHHHHHHH
Confidence 378889999998888888877655443321110 00 00 000 0 0012211 24455577
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--hhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 241 TFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYL--IFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 241 ~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~--~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
..+++.+|..++++.+...+..+..+..+...+.++. +|||++|+.+++|+++++.|+.+.+..+
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 7888999999999999999988888888778777775 8999999999999999999999987533
No 45
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.43 E-value=1.7e-06 Score=69.12 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHH---HhcCC--CCCCCchhHHHHHHHHH-HHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHH
Q 019428 45 YGWYFTFIQGFVYLVLIY---LQGFT--TKQMMNPWKTYVKLSAV-LMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVM 118 (341)
Q Consensus 45 ~~~~lt~~q~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll 118 (341)
.|...++.++.....+.. ....+ .......+......+++ ...+..+.+.++++++.+..+++..+.|+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~ 97 (126)
T PF00892_consen 18 SPLSITFWRFLIAGILLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAIL 97 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 456777888777553111 11111 11122334445556666 4788899999999999999999999999999999
Q ss_pred HHhhcccccccChhHHHHHHHHHHHHHHHh
Q 019428 119 GAFIPGLRRKYPAHEYVSALLLVVGLILFT 148 (341)
Q Consensus 119 ~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~ 148 (341)
++++ +||+++++++++++++++|++++.
T Consensus 98 ~~~~--~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 98 GWLF--LGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHH--cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999864
No 46
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.42 E-value=1.3e-05 Score=63.73 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 019428 203 GLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT-FIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTK 281 (341)
Q Consensus 203 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~-~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e 281 (341)
+.+.+.......++..+.......++..+ ++..++.. ..++..+++++++.++ ..+++..+.|+++.++|.++|+|
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~e 84 (113)
T PF13536_consen 8 SVLFLLIILLIRGRLRDLFRALRRKPWLW--LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKE 84 (113)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444443344454433333233333332 22323333 3677888999999996 77799999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 282 PLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 282 ~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+++..+++|+++++.|+.+-.+...+
T Consensus 85 r~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 85 RLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999988775543
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.27 E-value=3.7e-05 Score=73.59 Aligned_cols=136 Identities=10% Similarity=0.118 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 019428 164 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFI 243 (341)
Q Consensus 164 ~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l 243 (341)
+.+++--++++...++.|..++.. .++....+|-..++.+.+++.....+.. +... ..+...+..+.+.++.+++
T Consensus 16 ~~~~~~q~~~~~~~~~~k~a~~~G--~~~~~~~~~R~~iA~l~Ll~~~~~~~~~-~~~~--~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 16 TAMLATETSVVGISTLFKVATSKG--LNIYPFLGYSYLLASLLLLPSLFFTNRS-RSLP--PLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHHHHHHHHHHHHh-cccC--cchHHHHHHHHHHHHHHHH
Confidence 444555667777788888777543 5677777877777776666654322110 0000 0011223333334444445
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh------hCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 244 GQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI------FTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 244 ~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~------f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
.+.+++..+++++|..++++.++.|+++.+++.++ ++|+++..+++|+++.+.|+.+-...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 56678999999999999999999999999999999 69999999999999999999876643
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.27 E-value=5.8e-06 Score=65.79 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHH--H--hc-CCCCC-CCchhHHHHHH-HHHHHhhHHHH
Q 019428 22 FSFALLGSSLVISSMASARLQFS--YGWYFTFIQGFVYLVLIY--L--QG-FTTKQ-MMNPWKTYVKL-SAVLMGSHGLT 92 (341)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~F~--~~~~lt~~q~~~~~~~~~--~--~~-~~~~~-~~~~~~~~~~~-~~~~~~~~~l~ 92 (341)
..|++++....++-++|.|.+-+ .|.+-|.++..+...+.. + .+ +.... ...+-+.++.+ ++.-..+..+-
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 56888888888888999998654 677888888776443222 1 22 21110 11122334444 44567888899
Q ss_pred HHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHh
Q 019428 93 KGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 148 (341)
Q Consensus 93 ~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~ 148 (341)
+.+++.=.+|-..-+..++|+++.++++++ +|||++.++++++.++++|+++++
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lf--L~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILF--LGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999777777777888999999999999 999999999999999999998765
No 49
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.19 E-value=3.6e-05 Score=69.94 Aligned_cols=117 Identities=15% Similarity=0.052 Sum_probs=83.9
Q ss_pred hHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019428 175 FLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIAL 254 (341)
Q Consensus 175 l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~ 254 (341)
...+..|...+.. .++.+..++-...+.+++.+..... . ...+....+..+.++..+.+.+++.++++
T Consensus 3 ~~~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~---~-------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 3 TTGVVIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR---P-------PLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred chHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc---c-------CHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555544432 4567777776666666555432211 0 01112233444455556777888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 255 FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 255 ~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
+++...+++..+.|+++.+++.++++|++++.+++|+++.+.|+.+...
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999999999999999988753
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.17 E-value=8.4e-05 Score=67.49 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHH
Q 019428 159 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 238 (341)
Q Consensus 159 ~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 238 (341)
...|+++.+.|-+.+|+.-.+.|-+ +. .++.|...+-.+++.|+++......+...+..+ ..++|..+..+.+.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHH
Confidence 4569999999999999988887543 32 457888888888898888765554444333333 345666554444433
Q ss_pred HHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 239 MATFIGQV-SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 239 ~~~~l~~~-~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
.. ...|. .+-++..+-....+|.--.++|.+.+++|.++++|+++..|++...+..+||....+...
T Consensus 80 ~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 80 LL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 23344 445888888999999999999999999999999999999999999999999988776543
No 51
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.04 E-value=3.7e-05 Score=60.96 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=59.7
Q ss_pred HHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhc
Q 019428 83 AVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 149 (341)
Q Consensus 83 ~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~ 149 (341)
+++..+..+...+++.++.+.+..+-+..++++++.++++ +|||++++|++++.++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~--f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL--WHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4478888999999999999999888889999999999999 9999999999999999999998753
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.89 E-value=0.00053 Score=63.76 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHH-HHHHHHHHHHH
Q 019428 165 MISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYG-VLVFEAMATFI 243 (341)
Q Consensus 165 l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-~l~l~~~~~~l 243 (341)
..++-.+.||...+..|.... +.+|.+..++-..++.+.+++.....+.-.. ....+. .+..+.+....
T Consensus 12 ~~~~~~~iWg~~~~~~K~~~~---~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 12 ALFALYIIWGSTYLVIRIGVE---SWPPLMMAGVRFLIAGILLLAFLLLRGHPLP-------TLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------cHHHHHHHHHHHHHHHHH
Confidence 345566788888888765543 2578888888777777666654333221000 111122 22222233234
Q ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 244 GQVSVLSLI-ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 244 ~~~~~~~~i-~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
.+.+++... +++++..+++...+.|+++.+++.+ ++|+++..+++|+.+.+.|+.+-..
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 556667777 8899999999999999999999975 7999999999999999999987654
No 53
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.87 E-value=0.00047 Score=64.18 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHH
Q 019428 161 IGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMA 240 (341)
Q Consensus 161 ~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~ 240 (341)
.+++++++++++|+......|...+. .+|..+..+-...+.+++++.. . ..+ . ...+ +..+...++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~---~~P~~~~~~R~~~a~l~l~~~~---~-~~~-~---~~~~--~~~~~~~~l~ 70 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES---LGPVGGAAMIYSVSGLLLLLTV---G-FPR-L---RQFP--KRYLLAGGLL 70 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHHHHc---c-ccc-c---cccc--HHHHHHHhHH
Confidence 35678889999999998888765544 4677777666655655554321 1 111 0 1111 1122233333
Q ss_pred HHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 241 TFIGQVSVLSLIA----LFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 241 ~~l~~~~~~~~i~----~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
....+.+.+..++ ..++..++++..+.|+++.+++.++++|+++..+++|+++.+.|+.+-..
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2233344555554 45777888999999999999999999999999999999999999987654
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.84 E-value=0.0006 Score=63.61 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 019428 173 DSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLI 252 (341)
Q Consensus 173 ~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i 252 (341)
....++++|..+++. ..|..+.+.....+.....+. ...+.. +.. ..+...+..+...+++.++.+.+.+.++
T Consensus 14 ~~~~~~~NK~~l~~~--~~P~~~~~~~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~l 86 (302)
T TIGR00817 14 NVYFNIYNKKLLNVF--PYPYFKTLISLAVGSLYCLLS-WSSGLP-KRL---KISSALLKLLLPVAIVHTIGHVTSNVSL 86 (302)
T ss_pred HHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHHH-HHhCCC-CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777653 246666666555554433222 111100 000 0011223334444555566677889999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 253 ALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 253 ~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
+++++..++++..+.|+++.+++.++++|+++..+++|.++++.|+.+..
T Consensus 87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999997653
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.80 E-value=0.0003 Score=55.73 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 240 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 240 ~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
+..+++.++..++++.+...+...-.+.++.+.++|+++|||++|+.+++|+++++.|+.+-.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334567788899999999888888889999999999999999999999999999999998754
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.80 E-value=0.0011 Score=61.95 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 019428 164 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFI 243 (341)
Q Consensus 164 ~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l 243 (341)
++.++++++|+...+..|...++ .+|.+..++-..++.+.+++.....+ .+ +..+...++....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~---~~p~~~~~~R~~~a~~~l~~~~~~~~-----------~~--~~~~~~~g~~~~~ 70 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHN---MPPLMLAGLRFMLVAFPAIFFVARPK-----------VP--LNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhcCCC-----------Cc--hHHHHHHHHHHHH
Confidence 45778889999999888765543 56888877766655444333211100 01 1112222222222
Q ss_pred HH-HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 244 GQ-VSVLSLIAL-FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 244 ~~-~~~~~~i~~-~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
.+ .+++..+++ .++..++++..+.|+++.+++.++++|+++..+++|.++.+.|+.+-..
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 33 455677777 5778889899999999999999999999999999999999999987654
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.79 E-value=0.00076 Score=64.46 Aligned_cols=139 Identities=15% Similarity=0.088 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHH
Q 019428 160 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 239 (341)
Q Consensus 160 ~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~ 239 (341)
+.-..+.+.--.+...+++.+|.+++..+ -|+.+..+...++..+..+. +..+ ..+..+. ......+..++..++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~--~P~~l~~~~~~~~~l~~~~~-~~~~-~~~~~~~-~~~~~~~~~llp~gl 122 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLP--LPWTISSLQLFVGWLFALLY-WATG-FRKIPRI-KSLKLFLKNFLPQGL 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhHHHHHHHHHHHHHHHHHH-HHhC-CCCCCCC-CCHHHHHHHHHHHHH
Confidence 33334444444555666777887776532 26777766666554443322 1111 1000000 001112333444456
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 240 ATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 240 ~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
++..++...+.+++++++..++++..+.|+++.+++.++++|+++..+++|++++++|+.+-..
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 5566666677899999999999999999999999999999999999999999999999997653
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.71 E-value=0.0011 Score=62.06 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=86.2
Q ss_pred HHHHHHHHhhhCCCC-ChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019428 176 LGNLQEAIFTMNPET-TQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFIGQVSVLSLIAL 254 (341)
Q Consensus 176 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l~~~~~~~~i~~ 254 (341)
+.+.||++.++.... .+.-+++.+.........+.....+. ......| ...+. ..+++..++..+.+.++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~-~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----PKSRKIP-LKKYA-ILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----cCCCcCh-HHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 457889988765433 24444444444333333322222220 0000111 12222 2245556777888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcc
Q 019428 255 FGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 255 ~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
.+-.+..+.-..+++.+++++.++++++.+..++++.+++.+|+.+....+.+.++
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999999999999999999999999999999999999999999887655443
No 59
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.68 E-value=0.0016 Score=60.64 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=86.7
Q ss_pred CchhHHHHHHHHHHHHHHHhhc-cCC-hhHHHHHHHHHHHHH-HHHHhcCCCCCCCchhHH---HHHHHHH-HHhhHHHH
Q 019428 20 NNFSFALLGSSLVISSMASARL-QFS-YGWYFTFIQGFVYLV-LIYLQGFTTKQMMNPWKT---YVKLSAV-LMGSHGLT 92 (341)
Q Consensus 20 ~~~~~~~~~~~~~~~~~i~~~~-~F~-~~~~lt~~q~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~ 92 (341)
.+..+.+++...+..+.+..|. .-+ .+...+ .+.+...+ +.............++.. .+.++++ ..+...+.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888887765543 212 233443 34343332 211111111111111221 2344444 45777889
Q ss_pred HHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 93 KGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 93 ~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
+.++++++.+...++....|++..++++++ ++|+++..++++..+++.|++......
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 999999999999999999999886544
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.59 E-value=0.0044 Score=56.60 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHH
Q 019428 159 SMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEA 238 (341)
Q Consensus 159 ~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~ 238 (341)
...+....+.+.+.++......+..... ..+.....++....+.+...+... .+. ..........+..++...
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLL--LEP---RGLRPALRPWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHH--hhc---ccccccccchHHHHHHHH
Confidence 4567777777778888877776665443 123344444344434333221111 100 000011111223344445
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhhCCCcchhhhHHHHHHHHHHHHHhccCCCC
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSY-LIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~-~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
+.....+.+++..++++++...++.....|+++.+++. ++++|+++..+++|..+.+.|+.+........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 66567778889999999999999999999999999996 66799999999999999999999988765543
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00013 Score=66.98 Aligned_cols=212 Identities=14% Similarity=0.137 Sum_probs=121.7
Q ss_pred HHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCCCCCC-------
Q 019428 84 VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADAQTSP------- 156 (341)
Q Consensus 84 ~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~------- 156 (341)
.+..+-..++.|+.|.+.+..+-+-+.+.+..++++..+ ++||.++.-.+++.++++|-.+.+...++...
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~--L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el 150 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFF--LKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEV 150 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHH--HHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHH
Confidence 366777888999999999888888888999999999999 99999999999999999998877665543321
Q ss_pred -----CchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhh--cchHHH-HHH--HHhh
Q 019428 157 -----NFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLL--TGELFK-AWN--SCSQ 226 (341)
Q Consensus 157 -----~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~-~~~--~~~~ 226 (341)
+.....+...+.-.++ + -++ ....++.. ..++-|..+.+..-.+-.+-. -|+..+ .++ ....
T Consensus 151 ~~~~~~~~Fliy~~~iil~~~--i-l~~--~~~p~~g~---tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~ 222 (335)
T KOG2922|consen 151 WELATEPGFLVYVIIIILIVL--I-LIF--FYAPRYGQ---TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF 222 (335)
T ss_pred HHHhcCccHHHHHHHHHHHHH--H-Hhe--eecccccc---cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc
Confidence 1111111111111110 0 011 01112221 123345444333221110000 011110 000 0112
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHhhCC--Ccch----hhhHHHHHHHHHH
Q 019428 227 HLYVYGVLVFEAMATFIGQ-VSVLSLIALFGAATTAM-VTTARKAVTLLLSYLIFTK--PLTE----QHGTGLLLIAMGI 298 (341)
Q Consensus 227 ~~~~~~~l~l~~~~~~l~~-~~~~~~i~~~sa~t~si-~~~l~~v~~ills~~~f~e--~~t~----~~~iG~~lil~Gv 298 (341)
+|..|..++....+ ...| ...+.+++.+++...+- .-.+-..++++.|.++|.| ..+. ....|...++.|+
T Consensus 223 ~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 223 YPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 34444333332233 3344 34578899888876544 4445788899999999986 4444 4567888888888
Q ss_pred HHHhccCC
Q 019428 299 TLKLLPAD 306 (341)
Q Consensus 299 ~~y~~~k~ 306 (341)
++-...|.
T Consensus 302 flL~~~kd 309 (335)
T KOG2922|consen 302 FLLHRTKD 309 (335)
T ss_pred eEeeeecc
Confidence 87754443
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.57 E-value=0.00086 Score=53.70 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 239 MATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t-~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
++-.+++.++..++++.+-.. +++...+--+.+.++|+++|||++|+.+++|+.+++.|+..-+...
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 333456667777888877544 6666777888999999999999999999999999999998876544
No 63
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.56 E-value=0.08 Score=50.25 Aligned_cols=220 Identities=9% Similarity=0.017 Sum_probs=123.5
Q ss_pred HHHHHHHhhHHHHHHhhcCCchhHHH-HHhhcchHHHHHHHHhhccccccc---C----hhHHHHHHHHHHHHHHHhc--
Q 019428 80 KLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKY---P----AHEYVSALLLVVGLILFTL-- 149 (341)
Q Consensus 80 ~~~~~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v~ll~~l~~~~~~k~---s----~~~~~~l~l~~~Gv~l~~~-- 149 (341)
.-+++..........+.+|+.++... +......+...++..++ ++|=. + ..-.++++++++|+++.+.
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~--~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPII--NGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH--ccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666788888899999998777654 33445566777777777 66432 2 3346889999999999998
Q ss_pred --cCCCC-----CCCchHHHHHHHHHHHHHHHhHHH-------HHHHHhhhCCCCChHHHHHHHH---HHHHHHH-HHHH
Q 019428 150 --ADAQT-----SPNFSMIGVIMISGALIMDSFLGN-------LQEAIFTMNPETTQMEMLFCST---VVGLPML-IPPM 211 (341)
Q Consensus 150 --~~~~~-----~~~~~~~G~~l~l~a~~~~al~~v-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~~~ 211 (341)
.|.+. +..+.-.|++.++++.+.++.++. ..+.... .+ .++.....-.. .++.... +...
T Consensus 156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g-~~~~~~~lp~~~~~~~G~~~~n~~~~ 233 (345)
T PRK13499 156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LG-VDPLYAALPSYVVIMGGGAITNLGFC 233 (345)
T ss_pred hhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cC-CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55422 123457899999999999999983 3322111 11 12221111111 1121111 1111
Q ss_pred hh---cchHHH-HHHHHhhchHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HH-HHHHHHHHHHHHHhhC
Q 019428 212 LL---TGELFK-AWNSCSQHLYVYGVL---VFEAMATFIGQVSVLSLIALFGAATTAM---VT-TARKAVTLLLSYLIFT 280 (341)
Q Consensus 212 ~~---~g~~~~-~~~~~~~~~~~~~~l---~l~~~~~~l~~~~~~~~i~~~sa~t~si---~~-~l~~v~~ills~~~f~ 280 (341)
.. .++-.+ ..+.....+..+.-. .+.++.=.+++.++...-++.+.....+ .+ .+.-+++.+.|+ ++|
T Consensus 234 ~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk 312 (345)
T PRK13499 234 FIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK 312 (345)
T ss_pred HHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence 10 111000 000000001112221 2223333445556666666664443333 33 666688899998 488
Q ss_pred CCcc------hhhhHHHHHHHHHHHHHhcc
Q 019428 281 KPLT------EQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 281 e~~t------~~~~iG~~lil~Gv~~y~~~ 304 (341)
|.=+ ...++|+++++.|..+-.+.
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 8655 67799999999999876654
No 64
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.50 E-value=0.001 Score=60.25 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCC
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
+.-++.+.+.+.++++.+|.+..+....|.+++.++++++++++++..||+++.+.+.|+.+........
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 4445677889999999999999999999999999999999999999999999999999999987765544
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.48 E-value=0.0043 Score=58.64 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 230 VYGVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 230 ~~~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+|.++++ +++=..++++...+.++++-++.++......++++++|++++++++++.|++|++++++|+.+.......
T Consensus 79 ~w~y~ll-a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 79 WWKYFLL-ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4555555 4666789999999999999999999999999999999999999999999999999999999987776544
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.41 E-value=0.0013 Score=53.57 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHH-HHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHh--hcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 78 YVKLSA-VLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 78 ~~~~~~-~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l--~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
++..++ ++..+..+.+.+++..+.+.+.-+-+..++.+.+.++. + ++|+++++++++++++++|+.++...+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~--~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPW--FNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 344444 57899999999999999998887777777778777774 7 899999999999999999999987543
No 67
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.39 E-value=0.0019 Score=60.13 Aligned_cols=128 Identities=10% Similarity=-0.002 Sum_probs=91.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH----HHHHHHHhc-CCCCCCCchhHHHHHHHHHHHhhHHHHH
Q 019428 19 GNNFSFALLGSSLVISSMASARLQFSYGWYFTFIQGFV----YLVLIYLQG-FTTKQMMNPWKTYVKLSAVLMGSHGLTK 93 (341)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (341)
+++..+.+.++..+..+.++.+..-.-|...++.|+.. ..++..... .++. .....+..+..+++......+-.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~~~ia~~~y~ 229 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLMWGIGNFFYL 229 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999888877764323456666666552 211111110 0111 11122333346666667777788
Q ss_pred Hhhc-CCchhHHHHHhhcchHHHHHHHHhhcccccccChhHH----HHHHHHHHHHHHHhc
Q 019428 94 GSLA-FLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTL 149 (341)
Q Consensus 94 ~sl~-~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~----~~l~l~~~Gv~l~~~ 149 (341)
.+++ ++..+.+.++-+..|+...+.++++ +||+.+++|+ ++.++++.|+.+...
T Consensus 230 ~~~~~~~~~~~~~~ls~~~pvia~~~~v~~--l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 230 FSAQPKVGVATSFSLSQLGVIISTLGGILI--LGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHcccccchhhHHHHHHHHHHHHHHHHHHH--hccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 8999 9999999999999999999999999 9999999999 999999999988754
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.35 E-value=0.0076 Score=57.08 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHH--HHHHH---HHhhcchHHHHHHHHhhchHHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGL--PMLIP---PMLLTGELFKAWNSCSQHLYVYG 232 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~---~~~~~g~~~~~~~~~~~~~~~~~ 232 (341)
....|+++++++.+|++-..+-+|| .++. ++|.. |. ..+. .++.| ..+..+++.+... +.++..+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w----~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~--~~~~~~~~ 74 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW----SWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYS--SFSGSTLL 74 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCC----chhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHH--hcCHHHHH
Confidence 3578999999999999998887776 2222 24443 22 1111 11112 1122233322221 12444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhhCC-------CcchhhhHHHHHHHHHHHHHhcc
Q 019428 233 VLVFEAMATFIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTK-------PLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 233 ~l~l~~~~~~l~~~~~~~~i~~~sa~t-~si~~~l~~v~~ills~~~f~e-------~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
.-+++++.=.+++..++..+++.|-.. ..+..-+.-+.+.+++.+++|| +-.....+|+++++.|+.+..+.
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555788999999999988654 5666667788899999999985 22345789999999999999885
Q ss_pred CCC
Q 019428 305 ADD 307 (341)
Q Consensus 305 k~~ 307 (341)
..+
T Consensus 155 g~~ 157 (345)
T PRK13499 155 GQL 157 (345)
T ss_pred hhh
Confidence 443
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.35 E-value=0.012 Score=48.40 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHH
Q 019428 163 VIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATF 242 (341)
Q Consensus 163 ~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~ 242 (341)
.++++++-++-+++..++-++.++.+ +++...+.+...++..+....+..++. ........| +|. ++.++.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p-~w~--~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP--SLASLSSVP-WWA--YLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCC-hHH--hccHHHHH
Confidence 45666777777777777777665532 367777777777777666554544432 111112222 232 33567776
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHH-hhC---CCcchhhhHHHHHHHHHHHH
Q 019428 243 IGQVSVLSLIALFGAATTAMVTTARK-AVTLLLSYL-IFT---KPLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~~~l~~-v~~ills~~-~f~---e~~t~~~~iG~~lil~Gv~~ 300 (341)
+...+....+++.|+..+......-+ +.+++++.+ +|+ +++++.+++|.++++.|+.+
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 77777788899999998877776644 455666665 444 68999999999999999863
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.35 E-value=0.0025 Score=50.34 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 242 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~t-~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.+++.++..++++.+-.. +++-..+..+.+.++|+++|+|++++.+++|+.+++.|+..-+..+
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445566667788877544 6777778888999999999999999999999999999999886544
No 71
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.22 E-value=0.0066 Score=50.32 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=60.0
Q ss_pred HHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHh
Q 019428 80 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFT 148 (341)
Q Consensus 80 ~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~ 148 (341)
..+++.......++..++++|.-++++....+.+.+.++++++ ++|+++..++.|+.+++.|+.+..
T Consensus 86 ~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~--f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 86 LSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF--FGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh--cCCcCCHHHHHHHHHHHHHHheee
Confidence 3355567778889999999999999999999999999999999 999999999999999999998643
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.20 E-value=0.003 Score=50.64 Aligned_cols=72 Identities=8% Similarity=0.179 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHHH-HHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
+...-+++..+..+...++++++.+.+- +-.....+.+.+.++++ ++|++++.+++++.++++|++.....+
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~--f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLL--FDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3445567889999999999999988654 44567888899999999 999999999999999999999886544
No 73
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.11 E-value=0.0021 Score=58.19 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH-hhCC-----CcchhhhHHHHHHHHHHHHHhccCCCCccc
Q 019428 239 MATFIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYL-IFTK-----PLTEQHGTGLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~-t~si~~~l~~v~~ills~~-~f~e-----~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~ 311 (341)
..=+.++.+..-+++..|=. -..+-+...-+..-..|.+ +||+ .-.+.+++|+++++.|..+|...|.+++++
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~ 142 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEP 142 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCc
Confidence 33345566666666666633 3444455555566666654 6763 236799999999999999999988776443
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0067 Score=47.18 Aligned_cols=64 Identities=20% Similarity=0.104 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 242 FIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~-t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.+++.+.-..+|+.+-. .+++-+-+-.+.+.+.|+++|+|++++.+++|+.+++.|+..-+..+
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 35566667788887754 48888999999999999999999999999999999999998776543
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0053 Score=47.73 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHH-HHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhcc
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 150 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~-~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~ 150 (341)
....-+++..+..+.-.++++++.+.+ .+-.....+-+.+.++++ |+|+.+..+++++.++++|++..-..
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~--f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLL--FGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHh--cCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 344456688999999999999998765 455556777888999999 99999999999999999999987543
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.01 E-value=0.0093 Score=46.63 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 242 FIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~-t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
.+++.+...++|+.+-. .+++-.-+-.+.+.++|+++|+|++++.+++|+.+++.|+..-+.
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 45566667778887754 588888889999999999999999999999999999999987654
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.98 E-value=0.0067 Score=47.42 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCCchhHH-HHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhc
Q 019428 76 KTYVKLSAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 149 (341)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~sl~~is~~~~-~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~ 149 (341)
......-+++..+..+...+++.++.+.+ .+--....+-+.+.++++ |+|+.++.+++++.++++|++..-.
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~--f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVL--LGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 33344456788999999999999998754 444556777888999999 9999999999999999999998643
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.98 E-value=0.0067 Score=47.75 Aligned_cols=68 Identities=7% Similarity=0.253 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHH-HHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHH
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 147 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~-~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~ 147 (341)
.....+++..+..+...++++++.+.+ .+--....+.+.+.++++ ++|+.++.|++++.+++.|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~--f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWIL--FGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHh
Confidence 344455688899999999999998755 344456677888999999 99999999999999999999875
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.95 E-value=0.0083 Score=47.34 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHHHHHhhHHHHHHhhcCCchhHHHHH-hhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 80 KLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 80 ~~~~~~~~~~~l~~~sl~~is~~~~~l~-ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
..-++|..+..+...+++.++.+.+--+ -....+.+.+.++++ |+|+.++.+++++.++++|++.....+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~--f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445688888999999999998876544 345677888999999 999999999999999999999986544
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.88 E-value=0.014 Score=45.97 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHh
Q 019428 242 FIGQVSVLSLIALFGAA-TTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKL 302 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~-t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~ 302 (341)
.+++.+...++|+.+-. .+++-..+-.+.+.++|+++|||++++.+++|+.+++.|+..-+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45566666778877754 47888888899999999999999999999999999999998753
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.017 Score=53.97 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 237 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~ 237 (341)
+...|..+++.++++.+...++||+-..+.++. ... .++ ...++ ..+|.+|.-+.+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~-~~~-------------------~~~--~~~~~-l~~~~W~~G~~~~ 60 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG-SLR-------------------AGS--GGRSY-LRRPLWWIGLLLM 60 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccc-------------------ccc--hhhHH-HhhHHHHHHHHHH
Confidence 468899999999999999999999865543221 010 000 00011 1233333222221
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 238 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 238 ~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.++....+.++...++...+..+.+.-+.+.+++..+++|+++...+.|..+++.|..+.....
T Consensus 61 ----~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 61 ----VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred ----hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 3445555667778888889999999999999999999999999999999999999998765443
No 82
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.19 E-value=0.077 Score=48.49 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHH-h--cCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 019428 19 GNNFSFALLGSSLVISSMASARLQFSYGWYFTFIQGFVYLVLIYL-Q--GFTTKQMMNPWKTYVKLSAVLMGSHGLTKGS 95 (341)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 95 (341)
++++..+++++.-+..+..+.++.--.|+...+-|.+--.+...+ . ..++.+.+..++. +.-++++...+.+...|
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~n-il~G~~w~ignl~~~is 215 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKN-ILTGLIWGIGNLFYLIS 215 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHh-hHHHHHHHHHHHHHHHh
Confidence 347788888887787777776653335666666664432221111 1 1111122233333 44578888888889999
Q ss_pred hcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHH----HHHHHHHHHHH
Q 019428 96 LAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLI 145 (341)
Q Consensus 96 l~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~----~~l~l~~~Gv~ 145 (341)
-+.+.++..-.+.++.++...+.+.++ +||+-+++++ ++++++++|.+
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlgGI~i--l~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLGGIFI--LKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhhhheE--EEecCchhhHHHHHHHHHHHHHhhh
Confidence 999888888888888888889999999 9999998876 44555555544
No 83
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.01 E-value=0.034 Score=42.44 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHH
Q 019428 242 FIGQVSVLSLIALFGAAT-TAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLI 294 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~t-~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~li 294 (341)
.++..++..++|+.+... +++...+-.+.+.+.|+++|||++|+.+++|+.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 455667778888877655 47777788899999999999999999999999875
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.35 Score=40.18 Aligned_cols=138 Identities=18% Similarity=0.178 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHH
Q 019428 160 MIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAM 239 (341)
Q Consensus 160 ~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~ 239 (341)
....++.++|.++-.++...+.++.+..+ +|.-..+.+...+...+....+...+ ...+......| +|.++ .++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~p-wW~~~--GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAP-WWAWI--GGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCc-hHHHH--ccc
Confidence 45566777777777888888777655432 35545555566666665554333222 11122112223 33322 234
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHhhC----CCcchhhhHHHHHHHHHHHHHhc
Q 019428 240 ATFIGQVSVLSLIALFGAATTAMVTTA-RKAVTLLLSYLIFT----KPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 240 ~~~l~~~~~~~~i~~~sa~t~si~~~l-~~v~~ills~~~f~----e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
.+.+.-...-....+.|++++..+... .-+.+++++.+=+. .+++...++|++++++|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 443333444567788888776655554 44556666665443 58999999999999999665543
No 85
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.57 E-value=1 Score=42.52 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 242 FIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
++-|...|..+.+.+|.+..+...+|-..+.++++++++++++..||....+.+.|+.+.....
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 3445688999999999999999999999999999999999999999999999999999988443
No 86
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.54 E-value=0.21 Score=44.89 Aligned_cols=128 Identities=11% Similarity=-0.040 Sum_probs=81.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhc-c-CChhHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHH----HHHH-HhhHHHH
Q 019428 20 NNFSFALLGSSLVISSMASARL-Q-FSYGWYFTFIQGFVYLVLIYLQGFTTKQMMNPWKTYVKL----SAVL-MGSHGLT 92 (341)
Q Consensus 20 ~~~~~~~~~~~~~~~~~i~~~~-~-F~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~l~ 92 (341)
.|..|++.....+..+.+..+- + =..+..=+..-+.+..++....+.........-...++. +++- .+...+.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence 4666777777777766655432 2 223333334444443333221121110000111122222 3332 5667899
Q ss_pred HHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhc
Q 019428 93 KGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTL 149 (341)
Q Consensus 93 ~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~ 149 (341)
..++...+-+.+.+.-|..|.+-.+.++++ ++|++|..||+++..++.+.+=.+.
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~--L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIF--LGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 9999999999999998887764433
No 87
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.45 E-value=0.0058 Score=55.03 Aligned_cols=72 Identities=18% Similarity=0.422 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 234 LVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 234 l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
+++-++.++.+....|++.++.+-.-+.++....|++++++++.+++|+.|....+|..+.+.|+.+..+..
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 455677778888888999999999999999999999999999999999999999999999999998876544
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.30 E-value=0.05 Score=41.50 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=34.4
Q ss_pred HHHHHhhHHHHHHhhcCCchhHH-HHHhhcchHHHHHHHHhhcccccccChhHHHHHHHH
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQ-LMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLL 140 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~-~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~ 140 (341)
-.+|..+..+...++++++.+.+ .+......+.+.+.+.++ ++|+.+..|++++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~--f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFF--FGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHhheeeC
Confidence 34688999999999999988765 455667888999999999 9999999999998764
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.29 E-value=0.039 Score=52.07 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCc
Q 019428 236 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKP 309 (341)
Q Consensus 236 l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~ 309 (341)
..|..=+++++.++.+++.++....++++....++++.+|.++-+|++|+.+.++..+.++|+++.+..+.+++
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 34555578899999999999999999999999999999999999999999999999999999999988766553
No 90
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.03 E-value=0.66 Score=43.66 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHH-HHH---HHHHHHHHHhhcchHHHHHHHHhhch-HHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCS-TVV---GLPMLIPPMLLTGELFKAWNSCSQHL-YVYG 232 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~~~~~~~~~~~~-~~~~ 232 (341)
.-+.|+++..++.++.+.+.+=.||+.+ . ++|..... .++ -.|.+... +...++.+. ....| ..+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~-W----sWEs~Wlv~gi~swli~P~~~a~-l~ip~~~~i---~~~~~~~~l~ 74 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG-W----SWESYWLVQGIFSWLIVPWLWAL-LAIPDFFSI---YSATPASTLF 74 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC-c----cHHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHH---HHhCChhHHH
Confidence 3578999999999999888877666432 1 24443222 222 22322211 122333332 22233 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhhC-------CCcchhhhHHHHHHHHHHHHHhcc
Q 019428 233 VLVFEAMATFIGQVSVLSLIALFGA-ATTAMVTTARKAVTLLLSYLIFT-------KPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 233 ~l~l~~~~~~l~~~~~~~~i~~~sa-~t~si~~~l~~v~~ills~~~f~-------e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
...+.++.=.++...+-..+++.|- ...++.--+-.++..++--++.| ++-.....+|.++++.|+.+..+.
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 2233344444666667677777764 34555555555555555444432 334567899999999999999877
Q ss_pred CCC
Q 019428 305 ADD 307 (341)
Q Consensus 305 k~~ 307 (341)
...
T Consensus 155 G~~ 157 (344)
T PF06379_consen 155 GSM 157 (344)
T ss_pred HHh
Confidence 544
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.79 E-value=0.0076 Score=53.64 Aligned_cols=208 Identities=13% Similarity=0.193 Sum_probs=129.8
Q ss_pred HHHHHhhHHHHHHhhcCCchhHHH-HHhhcchHHHHHHHHhhcccccccChhHH----HHHHHHHHHHHHHhccCCCC--
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYPAHEY----VSALLLVVGLILFTLADAQT-- 154 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v~ll~~l~~~~~~k~s~~~~----~~l~l~~~Gv~l~~~~~~~~-- 154 (341)
+++....-..++-|.+++.++.+. +......+-+.+++++. |||=.+..+. .+++++++|+.+.++.|.+.
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~--f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFV--FHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEE--EeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 344567777888899998776553 22223445566788888 8998887774 68899999999999888532
Q ss_pred --CCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHhhchHHH
Q 019428 155 --SPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPP-MLLTGELFKAWNSCSQHLYVY 231 (341)
Q Consensus 155 --~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~ 231 (341)
+.++.-.|+...+.|.+-|-.|.+..+.. + .+.+...+-++. +...-... ....+|. .. +...|
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f-~----v~g~saiLPqAi-GMv~~ali~~~~~~~~--~~-----~K~t~ 210 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLF-D----VDGLSAILPQAI-GMVIGALILGFFKMEK--RF-----NKYTW 210 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeeccc-c----ccchhhhhHHHH-HHHHHHHHHhhccccc--ch-----HHHHH
Confidence 12345678888888888887776654332 1 222322222221 21111111 0111110 00 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhh----hHHHHHHHHHHHHHhccC
Q 019428 232 GVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 232 ~~l~l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~----~iG~~lil~Gv~~y~~~k 305 (341)
..+ +.++.=.+++.+.+..-++.|-.|.=..+.+--+++.+-|+++++|+=|.++ ++|+++++.|..+-...|
T Consensus 211 ~ni-i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 211 LNI-IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HHH-hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 222 2234445788888888888887776666777788999999999999877654 578888888887765544
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.06 E-value=0.077 Score=41.93 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=50.2
Q ss_pred HHHHhhHHHHHHhhcCCchhHHHHH-hhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHH
Q 019428 83 AVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 147 (341)
Q Consensus 83 ~~~~~~~~l~~~sl~~is~~~~~l~-ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~ 147 (341)
++|-.+...-++.+...+.|.+.-+ .++.-++|++.++++ .+|..+++.++++.+++.|+.++
T Consensus 49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~l--ge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLL--GEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHh--cCcccchhHHHHHHHHHcCeeee
Confidence 3455556666778888887776644 688899999999998 67777888999999999998764
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.36 E-value=0.84 Score=36.10 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHH
Q 019428 243 IGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~-~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~ 300 (341)
.+...++..+++.+=+.+..+ +.+.=+++.+.+.++.+|..+...++|+.+++.|+.+
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 445667777888776655544 5777789999998888888899999999999999864
No 94
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=90.38 E-value=0.39 Score=39.33 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 019428 288 GTGLLLIAMGIT 299 (341)
Q Consensus 288 ~iG~~lil~Gv~ 299 (341)
++|..+...|++
T Consensus 90 i~g~~~~~~G~~ 101 (136)
T PF08507_consen 90 IIGLLLFLVGVI 101 (136)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.12 E-value=1.6 Score=40.96 Aligned_cols=134 Identities=12% Similarity=0.089 Sum_probs=86.9
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhccC-----C-hhHHHHHHHHHHHHHHHHHh------c--C---CCCCCCchhHH
Q 019428 15 IDPNGNNFSFALLGSSLVISSMASARLQF-----S-YGWYFTFIQGFVYLVLIYLQ------G--F---TTKQMMNPWKT 77 (341)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~F-----~-~~~~lt~~q~~~~~~~~~~~------~--~---~~~~~~~~~~~ 77 (341)
..-|..|..++..+...+.+..++.+... + .+..+...+.-+........ + . ...+.+.+...
T Consensus 158 ~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~ 237 (316)
T KOG1441|consen 158 LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI 237 (316)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH
Confidence 34455577777777777777766655422 1 22333333333332222101 1 1 00011122223
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhcc
Q 019428 78 YVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLA 150 (341)
Q Consensus 78 ~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~ 150 (341)
+...++++...+...+..+..+|.-++++.-..+-+.+.+.++++ ++++.++.+.++..++++|+.+....
T Consensus 238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~i--F~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLI--FGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeee--ecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 334466677777888899999999899988888888888999999 89999999999999999999987643
No 96
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.12 E-value=0.33 Score=43.04 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=54.1
Q ss_pred HHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHH
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 146 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l 146 (341)
.++.+..-.+-...++|.+..+..+..++.++++.+++.++ ++++++..++.+..++..|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~--f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRL--FDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHeeeEe
Confidence 34456666678888999888888999999999999999999 9999999999999999888643
No 97
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=88.76 E-value=1.4 Score=40.43 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
+|-..+....+.++..++|+...+.--.--+++-++|..+++..++..||+|+..+..|+......
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 444556677788888999999999988889999999999999999999999999999999876544
No 98
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=88.38 E-value=0.17 Score=45.35 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHH
Q 019428 162 GVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMAT 241 (341)
Q Consensus 162 G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~ 241 (341)
+++.+++-++.|+..-....|.- -.|.++..-+.+-++.+.+...+...+.. +...+..=++++..=
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G-----G~p~qQ~lGtT~GALifaiiv~~~~~p~~--------T~~~~iv~~isG~~W 69 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG-----GKPYQQTLGTTLGALIFAIIVFLFVSPEL--------TLTIFIVGFISGAFW 69 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC-----CChhHhhhhccHHHHHHHHHHheeecCcc--------chhhHHHHHHhhhHh
Confidence 45667777888887665544422 13566665544433322222212111100 111121112233333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHhhCCCcchhh----hHHHHHHHHHHHHHhccCC
Q 019428 242 FIGQVSVLSLIALFGAATTAMVTTA-RKAVTLLLSYLIFTKPLTEQH----GTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~t~si~~~l-~~v~~ills~~~f~e~~t~~~----~iG~~lil~Gv~~y~~~k~ 306 (341)
.++|...|.+++..|-..+.-+++- .-+-+.++|++.|||=-++.+ .+..++++.|+.+-++.++
T Consensus 70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 5678888888888887776665554 556788999999999655543 3456677788777666554
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.58 E-value=7.6 Score=36.07 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCC
Q 019428 237 EAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 237 ~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
.++...++..+.+.++|+.|=-+..+.-.-|-+..++.+.++.+.+.++...+=..++-.|+.++...+...
T Consensus 89 is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 89 ISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 346666777888899999999999999999999999999999999999999999999999999998886554
No 100
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=87.13 E-value=20 Score=31.34 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=21.9
Q ss_pred HHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 273 LLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 273 lls~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
.+|..+|++-.=+...+|.++..+=+..-...++
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3466777777778888888776554444444443
No 101
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.09 E-value=1 Score=40.16 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 243 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
++....+.+++...=-|.-+--..||+-.+++|+.+.+++.+|....=..+++.|+.++.+-..|
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 34456678888888777778888999999999999999999999999999999999999875444
No 102
>PRK01637 hypothetical protein; Reviewed
Probab=83.94 E-value=2.8 Score=38.78 Aligned_cols=20 Identities=5% Similarity=-0.282 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHhcc
Q 019428 285 EQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 285 ~~~~iG~~lil~Gv~~y~~~ 304 (341)
|.++.+.++.+++-+-..+.
T Consensus 248 Wlyl~~~ilL~Gaelna~~~ 267 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLG 267 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776655543
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=82.75 E-value=0.97 Score=39.20 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 243 IGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 243 l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.+++.+..++++.+|+.++-+...+..+.-+++++.++|++....++..++.+.|+.+..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 456777889999999999999999999999999999999999999999999999998776644
No 104
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=78.20 E-value=36 Score=27.81 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhh-cchHHHHHHHHh--hcccccccChhHHHHHHHHHHHHHH
Q 019428 72 MNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAF--IPGLRRKYPAHEYVSALLLVVGLIL 146 (341)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks-~~pv~v~ll~~l--~~~~~~k~s~~~~~~l~l~~~Gv~l 146 (341)
+.||+.|+ =+++-.....+...+...+.++..+...- ...+..++++.+ +.--++++++++.+++.++++|+.+
T Consensus 62 ~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 62 SVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45777666 35555666677778888888776654333 344455566653 1104788999999999999999863
No 105
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=75.24 E-value=18 Score=34.97 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=3.6
Q ss_pred ccccChh
Q 019428 126 RRKYPAH 132 (341)
Q Consensus 126 ~~k~s~~ 132 (341)
.||+.++
T Consensus 14 e~~~~~~ 20 (378)
T PF05684_consen 14 EQKTKWG 20 (378)
T ss_pred hcchhhh
Confidence 4555554
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.08 E-value=40 Score=26.27 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 258 ATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 258 ~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
-.++..+-+--+.+++.+..+-+++++...++|..+++.|+.+..+..
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 356777888889999999999999999999999999999998776644
No 107
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=70.49 E-value=2.1 Score=37.96 Aligned_cols=18 Identities=17% Similarity=-0.055 Sum_probs=9.1
Q ss_pred HHHHHHHHhccCCCCccc
Q 019428 294 IAMGITLKLLPADDKPIK 311 (341)
Q Consensus 294 il~Gv~~y~~~k~~~~~~ 311 (341)
+++|...|.|.|.+++++
T Consensus 170 ~l~gGGa~yYfK~~K~K~ 187 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQ 187 (218)
T ss_pred HHhhcceEEEEEEecccc
Confidence 334445566666554433
No 108
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=70.24 E-value=5.5 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCcchhhhHHHHHHHHHHHH
Q 019428 272 LLLSYLIFTKPLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 272 ills~~~f~e~~t~~~~iG~~lil~Gv~~ 300 (341)
...++++++|++++++..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45677899999999999999999888753
No 109
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.38 E-value=69 Score=30.03 Aligned_cols=135 Identities=7% Similarity=0.070 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 019428 164 IMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFEAMATFI 243 (341)
Q Consensus 164 ~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~~~~~~l 243 (341)
.-++..++++.+..+.+|.++..++-...+.++.++++.+...+...-. .| +.+..++....+..|..+- +. +.
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~-lv~~~~l~~~~~kk~~P~~---~l-f~ 88 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LG-LVNFRPLDLRTAKKWFPVS---LL-FV 88 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hc-eeecCCcChHHHHHHccHH---HH-HH
Confidence 3344444444455566777776653212233445777665544432110 11 1110001111223332111 00 12
Q ss_pred HHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 244 GQV-SVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 244 ~~~-~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
+++ .-...+++.+--...+..+..++++.+....+||..++...+.......+|...+...
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence 222 2346778888888889999999999999999999999999999999999998877654
No 110
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=68.64 E-value=47 Score=32.74 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 019428 286 QHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~ 303 (341)
...++.++.++.+..|..
T Consensus 177 YF~~a~~v~l~~i~~~~~ 194 (437)
T TIGR00939 177 YFGTPCVVQLICIVCYLL 194 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 111
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.80 E-value=20 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCcchhhhHHHHHHHHHHHHH
Q 019428 272 LLLSYLIFTKPLTEQHGTGLLLIAMGITLK 301 (341)
Q Consensus 272 ills~~~f~e~~t~~~~iG~~lil~Gv~~y 301 (341)
...|+++++||+.+.++.|..++++|+.+.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999999998653
No 112
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=66.64 E-value=1.5e+02 Score=29.82 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=9.3
Q ss_pred ccccccccccCCCCCch
Q 019428 6 GLCLGFLSQIDPNGNNF 22 (341)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (341)
|...+|+++.=.+.-++
T Consensus 66 GG~y~wv~~a~G~~~Gf 82 (507)
T TIGR00910 66 GGIFAWVSNTLGERFGF 82 (507)
T ss_pred CCeeeehhhccCccHHH
Confidence 55666666555444433
No 113
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=66.59 E-value=1.9 Score=24.88 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=7.7
Q ss_pred ccccccccccc
Q 019428 327 FSEREEADEEK 337 (341)
Q Consensus 327 ~~~~~~~~~~~ 337 (341)
||++||||+|.
T Consensus 3 GSddEeed~ea 13 (28)
T PF10587_consen 3 GSDDEEEDEEA 13 (28)
T ss_pred CCccccccHHH
Confidence 56677778775
No 114
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.33 E-value=2.6 Score=39.37 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhhchHHHHHHHHH
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLFCSTVVGLPMLIPPMLLTGELFKAWNSCSQHLYVYGVLVFE 237 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~l~ 237 (341)
.+..|..+++.+.++-+...+..||-.++... ...+ .-+|+. .+. .++.+|.-++..
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~~~r-----------------a~~gg~----~yl-~~~~Ww~G~ltm 74 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-SGLR-----------------AGEGGY----GYL-KEPLWWAGMLTM 74 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-hccc-----------------ccCCCc----chh-hhHHHHHHHHHH
Confidence 46789999998888877777777665443211 0000 001211 111 233344322222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 238 AMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 238 ~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.+|...-|.+-..-+++-.+-.+.+.-+.+.+++..+++|++++...+|+.+++.|...-....
T Consensus 75 ----~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 75 ----IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred ----HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 2334444444445666677778888889999999999999999999999999999987655443
No 115
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=65.90 E-value=9.9 Score=37.22 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC-CcchhhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccccc
Q 019428 259 TTAMVTTARKAVTLLLSYLIFTK-PLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEA 333 (341)
Q Consensus 259 t~si~~~l~~v~~ills~~~f~e-~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (341)
.+++-+.+-|.++.+ +.+.++. --.....-|++-++.|+..+...|.+++ +-+-.++|+..+|+.|++
T Consensus 161 shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq------s~GLP~ie~~~~d~~e~~ 229 (448)
T COG2271 161 SHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ------SEGLPPIEEYRGDPLEIY 229 (448)
T ss_pred hhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc------ccCCCCHHHhhcCchhhh
Confidence 344444454555444 5555443 2234456688888888888877665543 334456667777766663
No 116
>PRK02237 hypothetical protein; Provisional
Probab=65.66 E-value=63 Score=25.26 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 258 ATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 258 ~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
-.++..+-+--+.+++.+..+-|++++...++|..+++.|+.+..+..
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 457778888889999999999999999999999999999998776544
No 117
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=64.82 E-value=5.8 Score=28.15 Aligned_cols=23 Identities=4% Similarity=0.015 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhccCCCCccccc
Q 019428 291 LLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 291 ~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
+++.+++.+.+.+.|.|+.++|.
T Consensus 42 i~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhhHh
Confidence 44456666667777877666654
No 118
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=62.28 E-value=1.8e+02 Score=29.19 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=34.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHhccCCCCccccccccc------chhhhhhhccccccc
Q 019428 281 KPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSS------FKVNIRKLSFSEREE 332 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 332 (341)
+.++....+|..+++.|+.+|-...+.++++|--++. --|++-+...||+||
T Consensus 416 ~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~~v~~~~~~ 473 (479)
T KOG1287|consen 416 SDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFNVVPDEKEE 473 (479)
T ss_pred ecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHHhcCccccc
Confidence 4555558999999999999997766554433332222 237777777776633
No 119
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=59.71 E-value=1.6e+02 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.020 Sum_probs=12.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHhcc
Q 019428 281 KPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
..+.........++++-.+.|...
T Consensus 224 ~~L~~~l~~sl~l~~~~~l~~~l~ 247 (340)
T PF12794_consen 224 LQLLERLILSLYLLLGWLLVYQLI 247 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555556543
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=59.66 E-value=61 Score=25.25 Aligned_cols=60 Identities=5% Similarity=-0.001 Sum_probs=36.5
Q ss_pred HHhhHHHHHHhhcCCchhHHHHHhh-cchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHH
Q 019428 85 LMGSHGLTKGSLAFLNYPAQLMFKS-TKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLIL 146 (341)
Q Consensus 85 ~~~~~~l~~~sl~~is~~~~~l~ks-~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l 146 (341)
|+..+-.+-.+.+..|.+---+++= .+....+.++.++ +||++++....+.++++.++..
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~--l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFY--LGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHH--hCCCccHHHHHHHHHHHHhhhe
Confidence 5555555555666544322111211 2333445677788 8999999999998888766543
No 121
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=58.97 E-value=12 Score=36.03 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHhccCCCCcccccccc--cchhhhhhhccccccccccccc
Q 019428 281 KPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATS--SFKVNIRKLSFSEREEADEEKR 338 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 338 (341)
..+...+++|.++.+.-+.....+...+.+-++... ..+..++.+.|+| .+.|+|++
T Consensus 294 ~~~~~~~iiGli~~~lcilYsalR~~s~~~l~k~~~~~~e~~~l~~~dG~~-~~~d~Ek~ 352 (426)
T KOG2592|consen 294 STFDATNIIGLIFLLLCILYSALRASSRTQLRKLTRSNEEEPLLPDEDGGG-RANDNEKD 352 (426)
T ss_pred ccccccchHHHHHHHHHHHHHHhhccccccccccccccccccCccCCCCCc-ccccccCC
Confidence 455667899999988887766655433332222222 1222233356664 44555554
No 122
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=58.88 E-value=3.9 Score=30.20 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.3
Q ss_pred hhccccccccccc
Q 019428 324 KLSFSEREEADEE 336 (341)
Q Consensus 324 ~~~~~~~~~~~~~ 336 (341)
.-+|+|+|.++||
T Consensus 51 EDSGnES~Gd~Ee 63 (81)
T PF00558_consen 51 EDSGNESDGDEEE 63 (81)
T ss_dssp TCCHCTTTTCCHH
T ss_pred ccCCCCCCCcHHH
Confidence 3456666655555
No 123
>PF14851 FAM176: FAM176 family
Probab=56.91 E-value=9.1 Score=31.96 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=8.1
Q ss_pred CCcchhhhHHHHHHHH
Q 019428 281 KPLTEQHGTGLLLIAM 296 (341)
Q Consensus 281 e~~t~~~~iG~~lil~ 296 (341)
|.+..+.+.|++.-++
T Consensus 20 E~~aLYFv~gVC~GLl 35 (153)
T PF14851_consen 20 ERFALYFVSGVCAGLL 35 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 124
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=56.17 E-value=14 Score=28.74 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHhhHHHHHHhhcCCchhHHH-HHhhcchHHHHHHHHhhcccccccC-hhHHHHHHHHHHHHHHH
Q 019428 84 VLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPVMVMGAFIPGLRRKYP-AHEYVSALLLVVGLILF 147 (341)
Q Consensus 84 ~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v~ll~~l~~~~~~k~s-~~~~~~l~l~~~Gv~l~ 147 (341)
++-....+-+.-|+..+.+.+. +..+++-.|+.+.+..+ +|+.. ++.+++..++++|+.++
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L---GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL---GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh---ccccccceeehhhhHHhhhhhhe
Confidence 3433344556667776666554 44556778899999887 56655 45588999999998765
No 125
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=56.03 E-value=9.6 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccc
Q 019428 289 TGLLLIAMGITLKLLPADDKPIKRTATS 316 (341)
Q Consensus 289 iG~~lil~Gv~~y~~~k~~~~~~~~~~~ 316 (341)
+-+.++++|+.+|.+.++++++-++.++
T Consensus 17 ~~~~~~Figiv~wa~~p~~k~~f~eaa~ 44 (48)
T cd01324 17 LYLALFFLGVVVWAFRPGRKKAFDEAAN 44 (48)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHc
Confidence 3357889999999998776655544333
No 126
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=54.20 E-value=4 Score=30.81 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=14.7
Q ss_pred chhhhHHHHHHHHHHHHHhcc
Q 019428 284 TEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 284 t~~~~iG~~lil~Gv~~y~~~ 304 (341)
+....+|..+.+.|.+++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345578888888888776553
No 127
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=53.08 E-value=14 Score=27.30 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=8.4
Q ss_pred hhhhhhcccccccccccc
Q 019428 320 VNIRKLSFSEREEADEEK 337 (341)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (341)
+-+..-..|+.||+|.|+
T Consensus 44 ~RIreraEDSGnES~Gd~ 61 (81)
T PF00558_consen 44 ERIRERAEDSGNESDGDE 61 (81)
T ss_dssp HHHHCTTTCCHCTTTTCC
T ss_pred HHHHcccccCCCCCCCcH
Confidence 344444445555544443
No 128
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=52.69 E-value=8.8 Score=26.16 Aligned_cols=13 Identities=15% Similarity=0.639 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhc
Q 019428 291 LLLIAMGITLKLL 303 (341)
Q Consensus 291 ~~lil~Gv~~y~~ 303 (341)
++++.+|+++-+.
T Consensus 8 IIviVlgvIigNi 20 (55)
T PF11446_consen 8 IIVIVLGVIIGNI 20 (55)
T ss_pred HHHHHHHHHHhHH
Confidence 4455555555443
No 129
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.66 E-value=4.6 Score=36.98 Aligned_cols=69 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccccc-ChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhCCCCChHHHHH
Q 019428 125 LRRKY-PAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMNPETTQMEMLF 197 (341)
Q Consensus 125 ~~~k~-s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~~~~~~~~~~~ 197 (341)
||||. ...-.++++++++-+.+...-.. ..+.-+.|+++.++.+.+.-..+.+.. +++++. .+.++++.
T Consensus 72 F~RrLLCPLGlLCiilimi~lLv~~L~tL--tGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~G-As~WtiLa 141 (381)
T PF05297_consen 72 FKRRLLCPLGLLCIILIMIVLLVSMLWTL--TGQTLFVGIVILFLCCLLALGVWFYMW-LLRELG-ASFWTILA 141 (381)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-hHHHHHHH
Confidence 45554 33345666666555444433221 123456777765444333222233322 445444 24455543
No 130
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=50.54 E-value=21 Score=35.48 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=19.9
Q ss_pred cchhhhHHHHHHHHHHHHHhccCC
Q 019428 283 LTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 283 ~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
++..|++++.++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999877765443
No 131
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=50.48 E-value=13 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.2
Q ss_pred CcchhhhHHHHHHHHHHHHHhccCCCCccc
Q 019428 282 PLTEQHGTGLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 282 ~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~ 311 (341)
.+++..++|++++++|..+|...+.+++-.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~ 33 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVS 33 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchh
Confidence 578999999999999999998766555433
No 132
>PRK02237 hypothetical protein; Provisional
Probab=50.42 E-value=33 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 115 VMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 115 v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
..+..+.+ -++|+++.++++..++.+|+.++.+.+
T Consensus 73 Sl~W~w~v--dg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 73 SLLWLWVV--DGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHh--cCcCCChhHHHhHHHHHHhHHHheecC
Confidence 34667888 789999999999999999999886654
No 133
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=49.94 E-value=13 Score=26.75 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHhhCCCcch-hhhHHHHHHHHHHHHHhccCCCCcc-cccccccchhhhhhhc
Q 019428 276 YLIFTKPLTE-QHGTGLLLIAMGITLKLLPADDKPI-KRTATSSFKVNIRKLS 326 (341)
Q Consensus 276 ~~~f~e~~t~-~~~iG~~lil~Gv~~y~~~k~~~~~-~~~~~~~~~~~~~~~~ 326 (341)
+-+||.++.. .-.+|.+-.++|+..+...+.+.++ ..++.+..-.|+||--
T Consensus 5 Y~I~Gr~V~~H~LAi~tLg~~~~~~~~~~~g~k~~~~~~ppi~asS~DeE~fI 57 (71)
T PF11022_consen 5 YTIFGRQVQSHYLAIATLGTVFGGVYLATSGSKKPKKATPPINASSSDEEKFI 57 (71)
T ss_pred eeecccccccchhHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 4467766643 4456666666666655544443322 3333444444666543
No 134
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=48.52 E-value=2.7e+02 Score=27.23 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=34.3
Q ss_pred HHHhhHHH--HHHHHHHHHHHHHHHHHHhhCCCcch--hhhHHHHHHHHHHHHHhccCCC
Q 019428 252 IALFGAAT--TAMVTTARKAVTLLLSYLIFTKPLTE--QHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 252 i~~~sa~t--~si~~~l~~v~~ills~~~f~e~~t~--~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
-+++.|.. .++.|.+-.+..++.-...=+++-+. ...++.++.+..+..|...+++
T Consensus 147 ~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~l 206 (406)
T KOG1479|consen 147 SEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKL 206 (406)
T ss_pred HHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcc
Confidence 34455544 35666666666666665555555543 5566677778888888844444
No 135
>PF14002 YniB: YniB-like protein
Probab=48.51 E-value=43 Score=28.14 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCc----------chhhhHHHHHHHHHHHHHhccCCCCcccccccc--cchhhhhhhcccc-cccccccc
Q 019428 271 TLLLSYLIFTKPL----------TEQHGTGLLLIAMGITLKLLPADDKPIKRTATS--SFKVNIRKLSFSE-REEADEEK 337 (341)
Q Consensus 271 ~ills~~~f~e~~----------t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ 337 (341)
+-.+++++.+.|. +...++=..+++.|..+..-..+-.+|-|..+. -+|--+||.+|+| +.-|+.|+
T Consensus 51 TpFLn~FW~nSPvP~~~~~f~~~ni~F~vIy~liFvGlAL~aSG~rm~rqvk~ire~IEdqlIlE~akG~~g~treqlE~ 130 (166)
T PF14002_consen 51 TPFLNFFWNNSPVPDFDNGFSGSNIMFWVIYLLIFVGLALQASGARMSRQVKFIREGIEDQLILEQAKGSEGRTREQLEE 130 (166)
T ss_pred CchhhhhccCCCCCCcccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHhcCCccccHHHHHh
Confidence 3455666655432 223344456667777665543333334444444 5677788888888 55555555
Q ss_pred c
Q 019428 338 R 338 (341)
Q Consensus 338 ~ 338 (341)
+
T Consensus 131 ~ 131 (166)
T PF14002_consen 131 R 131 (166)
T ss_pred c
Confidence 4
No 136
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=13 Score=25.79 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhccCCCCccccc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
.+=+.+++.|++++.+.+.++++...
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~~d~ 40 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGEFDE 40 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHH
Confidence 44567788888999887766554433
No 137
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=47.94 E-value=9.3 Score=35.53 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh---hCCCcc--hhhhHHHHHHHHHHHHHhc
Q 019428 236 FEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLI---FTKPLT--EQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 236 l~~~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~---f~e~~t--~~~~iG~~lil~Gv~~y~~ 303 (341)
..++.--+++++..+++...|-..+-+++.- +++++|+.+ .+++.+ ..-+.|..++++.+++-..
T Consensus 77 aGGvvfnlgNillq~aia~aGmSVafpvg~g---lalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 77 AGGVVFNLGNILLQAAIAFAGMSVAFPVGIG---LALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhHhhhhHHHHHHHHHHHhcceeeeeeecc---eEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 3344445778777777776665444333321 222333322 244554 3556688888888776543
No 138
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=47.18 E-value=30 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=30.4
Q ss_pred HHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 114 PVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 114 ~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
...+..+.+ -++|+++.++++..++++|+.++.+.+
T Consensus 70 ~Sl~W~w~v--dg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 70 ASLLWGWLV--DGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHhhh--cCcCCChHHHHhHHHHHHhHHheEecC
Confidence 345667888 789999999999999999999987654
No 139
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.03 E-value=5.9 Score=36.29 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhcc
Q 019428 242 FIGQVSVLSLIALFGAATTAMVTTA----RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 242 ~l~~~~~~~~i~~~sa~t~si~~~l----~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~ 304 (341)
+++..++.+.+++++|+.-++.... -.++-+++++++-..=+|...=+=-.+.+.+++++.|.
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555679999999877665433 22333444444333334444333344556666654443
No 140
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=46.95 E-value=62 Score=29.23 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=16.2
Q ss_pred CCCc-chhhhHHHHHHHHHHHHH
Q 019428 280 TKPL-TEQHGTGLLLIAMGITLK 301 (341)
Q Consensus 280 ~e~~-t~~~~iG~~lil~Gv~~y 301 (341)
+|.+ -..+.+|..+.+.=..+|
T Consensus 182 ~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 182 KDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred cCeEEEcccHHHHHHHHHHHHHh
Confidence 4433 356779999988888888
No 141
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=45.31 E-value=18 Score=33.27 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcc
Q 019428 267 RKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 267 ~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
.++.++.+++++.|.+-+..|+....++-+|+++.+..+.++.+
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 34667788999999999999999999999999999988766543
No 142
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=44.85 E-value=10 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccccccccccC
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEKRA 339 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (341)
|+ ++++++|+++...-..++-..|+ --+.|-.+|-|-++.+.=+||++-|
T Consensus 9 Wi-iLl~lvG~i~n~iK~L~RvD~K~-fL~nKP~lPPHRDnN~~WDdeDDwP 58 (63)
T PF13980_consen 9 WI-ILLILVGMIINGIKELRRVDHKK-FLDNKPELPPHRDNNAKWDDEDDWP 58 (63)
T ss_pred HH-HHHHHHHHHHHHHHHHHhcCHHH-HhcCCCCCCCCCccccccccccccc
Confidence 44 78899999988764322211111 1134445666666666555555543
No 143
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=44.07 E-value=9.3 Score=30.46 Aligned_cols=51 Identities=4% Similarity=-0.107 Sum_probs=30.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccc
Q 019428 281 KPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSERE 331 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (341)
.+....+|.-..++++++..|.++++++++.+...+..++...+....+++
T Consensus 64 ~~~~A~nwavgsF~l~s~~~we~Cr~~r~~~~~~~~~~~e~~~~k~~~~~~ 114 (118)
T PF12597_consen 64 NPRKAANWAVGSFFLGSLGSWEYCRYNRRKERQQMKRAVEAMQEKKRKKEK 114 (118)
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777778888888888776555544444444444333333333
No 144
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=43.51 E-value=21 Score=27.58 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=5.4
Q ss_pred cccccccccc
Q 019428 327 FSEREEADEE 336 (341)
Q Consensus 327 ~~~~~~~~~~ 336 (341)
.+++++.|||
T Consensus 94 ~~~~~~~Dee 103 (103)
T PF06422_consen 94 KKKKKKNDEE 103 (103)
T ss_pred hhhcccCCCC
Confidence 3445556665
No 145
>PF15102 TMEM154: TMEM154 protein family
Probab=42.36 E-value=23 Score=29.27 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHhccCCCCccccc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
+++.++++..++++.+.|+|+.++++
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~~ 91 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQEP 91 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCCC
Confidence 45556666667777766655544433
No 146
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=41.48 E-value=3.8e+02 Score=26.91 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=10.6
Q ss_pred HhhCCCcchhhhHHHHHH
Q 019428 277 LIFTKPLTEQHGTGLLLI 294 (341)
Q Consensus 277 ~~f~e~~t~~~~iG~~li 294 (341)
-++|++-+|....+..++
T Consensus 175 ~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 175 SLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HhcCCCcchHHHHHHHHH
Confidence 345666666666665555
No 147
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=41.44 E-value=5.8 Score=35.98 Aligned_cols=69 Identities=9% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 239 MATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 239 ~~~~l~~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+.-.=+|++...+-++++-++......--.+...++++++++.+-.+.++.|.++++.|+.........
T Consensus 86 ~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 86 FVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred EEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 333445666667788888888888888888899999999999999999999999999999877665443
No 148
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=41.28 E-value=24 Score=29.34 Aligned_cols=10 Identities=10% Similarity=-0.027 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 019428 289 TGLLLIAMGI 298 (341)
Q Consensus 289 iG~~lil~Gv 298 (341)
+|..++++.+
T Consensus 58 VGg~ill~il 67 (154)
T PF04478_consen 58 VGGPILLGIL 67 (154)
T ss_pred ccHHHHHHHH
Confidence 4444444433
No 149
>PRK02935 hypothetical protein; Provisional
Probab=41.17 E-value=86 Score=24.38 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=17.9
Q ss_pred chhhhHHHHHHHHHHHHHhccCCC
Q 019428 284 TEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 284 t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+...++|.+.++++..+|-|....
T Consensus 41 ~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 41 TIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445678888888888888876543
No 150
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.43 E-value=16 Score=24.00 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhccCCCCccccc
Q 019428 289 TGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 289 iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
+-..+++.|++++.+.++++++-++
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~~~e~ 40 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHH
Confidence 3345677888888886665444333
No 151
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=40.01 E-value=83 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHH
Q 019428 80 KLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLV 141 (341)
Q Consensus 80 ~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~ 141 (341)
+-|++-++...++-+..+-++..++.+.-+..-.+..+.+.++ ++++.++..+.++++-.
T Consensus 229 ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvf--fdap~nf~si~sillGf 288 (309)
T COG5070 229 ISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVF--FDAPVNFLSIFSILLGF 288 (309)
T ss_pred HHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhh--cCCchhHHHHHHHHHHH
Confidence 3355556666777778888888888888887777777777777 77777776666655443
No 152
>PF15325 MRI: Modulator of retrovirus infection
Probab=39.52 E-value=30 Score=26.36 Aligned_cols=16 Identities=44% Similarity=0.395 Sum_probs=11.3
Q ss_pred hcccccccccccccCC
Q 019428 325 LSFSEREEADEEKRAP 340 (341)
Q Consensus 325 ~~~~~~~~~~~~~~~~ 340 (341)
.+++.+||||+++..|
T Consensus 52 ssgs~Se~Ed~g~d~~ 67 (106)
T PF15325_consen 52 SSGSSSEEEDSGNDAP 67 (106)
T ss_pred CCCCccccccccccCC
Confidence 3577788888877654
No 153
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=37.27 E-value=4.2e+02 Score=26.22 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.5
Q ss_pred cccChhHHHHHHHHHHHHHHHhccC
Q 019428 127 RKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 127 ~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
-|.+.+-.+++++..+.+.+...-+
T Consensus 18 ~k~klhpF~aLl~~al~~gl~~G~~ 42 (441)
T PF02447_consen 18 IKFKLHPFLALLIVALIVGLLAGMP 42 (441)
T ss_pred HHHhhhHHHHHHHHHHHHHHHcCCC
Confidence 3555666777777777777766544
No 154
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=37.24 E-value=91 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhCCCcchhhhHHHHHHHHHHH
Q 019428 268 KAVTLLLSYLIFTKPLTEQHGTGLLLIAMGIT 299 (341)
Q Consensus 268 ~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~ 299 (341)
.+...+.|...+ ..|++-++.|..
T Consensus 85 ~~~~~i~g~~~~--------~~G~~~i~l~~~ 108 (136)
T PF08507_consen 85 SILSIIIGLLLF--------LVGVIYIILGFF 108 (136)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 445555555544 677777766654
No 155
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=37.18 E-value=39 Score=33.28 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=19.2
Q ss_pred CcchhhhHHHHHHHHHHHHHhccCC
Q 019428 282 PLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 282 ~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
.-++..++|.++.+..+..-+.+..
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 4567889999999999877666543
No 156
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=35.74 E-value=20 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.7
Q ss_pred CCcchhhhHHHHHHHH
Q 019428 281 KPLTEQHGTGLLLIAM 296 (341)
Q Consensus 281 e~~t~~~~iG~~lil~ 296 (341)
.|+=+.+++|.++++.
T Consensus 176 ~pliP~~i~Gl~~vl~ 191 (433)
T COG2851 176 VPLIPIQIIGLVLVLA 191 (433)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4777899999999888
No 157
>PF15345 TMEM51: Transmembrane protein 51
Probab=35.64 E-value=20 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHhccCCCCccccc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIKRT 313 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~~~ 313 (341)
..|+++.++.+++-.+.|+|+++...
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46888888888888877766554444
No 158
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=35.23 E-value=1.4e+02 Score=20.13 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 019428 133 EYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTM 186 (341)
Q Consensus 133 ~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~ 186 (341)
..++..++++|+++....+. |....+++...-|......++..+.
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp---------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP---------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC---------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788889999998765431 6677777777777766676666543
No 159
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.20 E-value=2.6e+02 Score=23.24 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHHH-HHH---Hh-cCCC--CCCCchhHHHHHHHHHHHhhHHHHHHhhcCCchhHHH-HHhhcchHHH
Q 019428 44 SYGWYFTFIQGFVYLV-LIY---LQ-GFTT--KQMMNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQL-MFKSTKVLPV 115 (341)
Q Consensus 44 ~~~~~lt~~q~~~~~~-~~~---~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~sl~~is~~~~~-l~ks~~pv~v 115 (341)
..|..-++.-+.+.++ +.. .+ +... ...+.||+.|.. +++-......+-.....+...+.+ +.-+...+.-
T Consensus 32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 4566666666666332 211 21 1111 124568887763 332233333333444555554433 3333444444
Q ss_pred HHHHHhh--cccccccChhHHHHHHHHHHHHHHHh
Q 019428 116 MVMGAFI--PGLRRKYPAHEYVSALLLVVGLILFT 148 (341)
Q Consensus 116 ~ll~~l~--~~~~~k~s~~~~~~l~l~~~Gv~l~~ 148 (341)
++...+= +--++++++.++++++++.+|+.+..
T Consensus 111 lliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 111 LLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4443221 00258899999999999999965543
No 160
>PRK11469 hypothetical protein; Provisional
Probab=34.78 E-value=68 Score=27.74 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHH
Q 019428 257 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLL 292 (341)
Q Consensus 257 a~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~ 292 (341)
+...+....+-|..+..+|..+-+-.....+|+|..
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~ 75 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFV 75 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666665544322244566655
No 161
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.35 E-value=3.1e+02 Score=23.80 Aligned_cols=80 Identities=13% Similarity=-0.040 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH--HHHHH----hcCCCCCCCchhHHHHHHHHHHHhhHHHHHH
Q 019428 21 NFSFALLGSSLVISSMASARLQFSYGWYFTFIQGFVYL--VLIYL----QGFTTKQMMNPWKTYVKLSAVLMGSHGLTKG 94 (341)
Q Consensus 21 ~~~~~~~~~~~~~~~~i~~~~~F~~~~~lt~~q~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (341)
++.+.-.-+-+.+....|++-.+-|++.-+..-.++.- +.... +...++..+.++++++....+-..-+.+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i 180 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMI 180 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 33444344444444457777678888755444434321 11111 1111233445667776654443333333334
Q ss_pred hhcCCc
Q 019428 95 SLAFLN 100 (341)
Q Consensus 95 sl~~is 100 (341)
+-.+++
T Consensus 181 ~t~~lP 186 (226)
T COG4858 181 ATVFLP 186 (226)
T ss_pred HHhhCC
Confidence 444443
No 162
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.09 E-value=2.2e+02 Score=26.38 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=39.0
Q ss_pred hHHHHHhhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccCC
Q 019428 102 PAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLADA 152 (341)
Q Consensus 102 ~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~~ 152 (341)
..+.++....-..|.++++++ |.|+++..-.-+.++++.|+.+-.+.+.
T Consensus 287 ~~aatvTTaRKavTi~lSfll--FsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 287 LIAATVTTARKAVTILLSFLL--FSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hHHHHHHHhHhHHHHHHHHHH--HcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 334444444456788999999 9999999999999999999999888764
No 163
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.96 E-value=47 Score=23.50 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHhccCCCC
Q 019428 286 QHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
.-.+++++++.|.++|....+++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34688999999999998766544
No 164
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=32.99 E-value=4.5e+02 Score=25.28 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.0
Q ss_pred HHHHHhhhCCC
Q 019428 179 LQEAIFTMNPE 189 (341)
Q Consensus 179 ~~~~~~~~~~~ 189 (341)
+.||+++|+++
T Consensus 72 ~Aek~LRk~Pk 82 (364)
T PF03605_consen 72 IAEKILRKNPK 82 (364)
T ss_pred HHHHHHHhCCC
Confidence 46888888754
No 165
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=31.56 E-value=19 Score=28.94 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=8.2
Q ss_pred cccccccccccccCC
Q 019428 326 SFSEREEADEEKRAP 340 (341)
Q Consensus 326 ~~~~~~~~~~~~~~~ 340 (341)
-+|.+||+|++++|-
T Consensus 98 ~d~daeeDdd~kKPa 112 (134)
T PF04697_consen 98 HDDDAEEDDDVKKPA 112 (134)
T ss_pred ccccccccchhhccc
Confidence 344455566666664
No 166
>PHA03049 IMV membrane protein; Provisional
Probab=31.47 E-value=63 Score=22.81 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHhccCCCC
Q 019428 286 QHGTGLLLIAMGITLKLLPADDK 308 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k~~~ 308 (341)
.-.+++++++.|.++|....+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34678899999999998766544
No 167
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=31.46 E-value=1.5e+02 Score=25.93 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhhhHH-HHHHHHHHH
Q 019428 255 FGAATTAMVTTARKAVTLLLSYLIFTKPLT-EQHGTG-LLLIAMGIT 299 (341)
Q Consensus 255 ~sa~t~si~~~l~~v~~ills~~~f~e~~t-~~~~iG-~~lil~Gv~ 299 (341)
..+...+++..+-|..+..+|..+-+--.. .-+++| .+++..|..
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 445556666666677777777655432112 234444 445555654
No 168
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.43 E-value=1.8e+02 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=9.9
Q ss_pred chhhhHHHHHHHHHHHHHhcc
Q 019428 284 TEQHGTGLLLIAMGITLKLLP 304 (341)
Q Consensus 284 t~~~~iG~~lil~Gv~~y~~~ 304 (341)
+|+..++..++=.|..+.+..
T Consensus 73 sPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 73 SPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 445555554444444444443
No 169
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.06 E-value=54 Score=29.07 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHhccC
Q 019428 286 QHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k 305 (341)
+..||++++++.++.|.+.-
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 44667777777777776553
No 170
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.30 E-value=47 Score=30.70 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccchhhhhhhcc-cccccccccccCC
Q 019428 291 LLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSF-SEREEADEEKRAP 340 (341)
Q Consensus 291 ~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 340 (341)
.+++++|++++-..|+|++.. +++.. --||+|+-+++||
T Consensus 242 ~ll~l~Gii~~~~~r~~~~~~-----------~~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 242 FLLVLIGIILAYIRRRRQGYV-----------PAPTSPRIDEDEMMQRVPP 281 (281)
T ss_pred HHHHHHHHHHHHHHhhhccCc-----------CCCcccccCcccccccCCC
Confidence 356667777766555433322 12222 3466777888887
No 171
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.24 E-value=62 Score=21.60 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=6.6
Q ss_pred HHHHHHHHHhccC
Q 019428 293 LIAMGITLKLLPA 305 (341)
Q Consensus 293 lil~Gv~~y~~~k 305 (341)
+++.|+.+.+..|
T Consensus 13 ~~lLg~~I~~~~K 25 (50)
T PF12606_consen 13 MGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHhh
Confidence 3445555555544
No 172
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.21 E-value=65 Score=25.81 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhc
Q 019428 291 LLLIAMGITLKLL 303 (341)
Q Consensus 291 ~~lil~Gv~~y~~ 303 (341)
.++.++|+++-..
T Consensus 44 ~vvlvi~~~LLgr 56 (125)
T PF15048_consen 44 FVVLVISFFLLGR 56 (125)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 173
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=28.11 E-value=99 Score=30.20 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.4
Q ss_pred cccccChhHHHHHHHHHHHHHHHhc
Q 019428 125 LRRKYPAHEYVSALLLVVGLILFTL 149 (341)
Q Consensus 125 ~~~k~s~~~~~~l~l~~~Gv~l~~~ 149 (341)
.|-++..|.+.+.++..+|..+++.
T Consensus 84 ~~v~y~~Ri~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 84 HRVPYWIRILICVALSAAGMLLVAF 108 (402)
T ss_pred hhccchHHHHHHHHHHHHHHhheee
Confidence 4566778888888888888777654
No 174
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.98 E-value=1.1e+02 Score=23.49 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHhhcccccccChhHHHHHHHHHHHHHHH
Q 019428 116 MVMGAFIPGLRRKYPAHEYVSALLLVVGLILF 147 (341)
Q Consensus 116 ~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~ 147 (341)
..++.+. +||..++..+.+.+++..|+..+
T Consensus 84 v~Fsvfy--l~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFY--LKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHH--HcCcchHHHHHHHHHHHHHHHHh
Confidence 4567777 89999999999998888888765
No 175
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=27.86 E-value=5.6e+02 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=8.1
Q ss_pred CCcchhhhHHHHHHHHH
Q 019428 281 KPLTEQHGTGLLLIAMG 297 (341)
Q Consensus 281 e~~t~~~~iG~~lil~G 297 (341)
...+..+.....++...
T Consensus 164 ~~~s~~~s~~~avv~lv 180 (366)
T PRK10599 164 ANFSTGQALLVALISAA 180 (366)
T ss_pred CccchhHHHHHHHHHHH
Confidence 34455555555544443
No 176
>PRK13664 hypothetical protein; Provisional
Probab=27.23 E-value=34 Score=23.34 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccccccccc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADEEK 337 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (341)
|+=++++++|+++..+-..++-..|+ --+.|-++|-|.+..+.=+||++
T Consensus 9 Wilill~lvG~i~N~iK~l~RvD~Kk-fl~nkp~LPPHRD~N~kWDdeDd 57 (62)
T PRK13664 9 WILVLVFLVGVLLNVIKDLKRVDHKK-FLANKPELPPHRDFNDKWDDEDD 57 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHH-HhcCCCCCCCCcccccccccccc
Confidence 55578899999988764332211111 11334455656555554444444
No 177
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=26.14 E-value=8.3 Score=26.63 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=19.9
Q ss_pred CCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 281 KPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 281 e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
+..+....+|..++.+|...|+....
T Consensus 14 HR~tV~~Lig~T~~~g~~~~~~~y~~ 39 (59)
T PF14880_consen 14 HRTTVLGLIGFTVYGGGLTVYTVYSY 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899998888888876543
No 178
>COG1288 Predicted membrane protein [Function unknown]
Probab=25.90 E-value=83 Score=31.01 Aligned_cols=54 Identities=6% Similarity=-0.066 Sum_probs=28.6
Q ss_pred CCCcchhhhHHHHHHHHHHH-HHhccCCCCcccccccccchhhhhhhcccccccc
Q 019428 280 TKPLTEQHGTGLLLIAMGIT-LKLLPADDKPIKRTATSSFKVNIRKLSFSEREEA 333 (341)
Q Consensus 280 ~e~~t~~~~iG~~lil~Gv~-~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (341)
.|-+.++-..=++.++.++. +|.|.|+-++.++++....++++.++..+..|++
T Consensus 213 ~sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~ 267 (481)
T COG1288 213 LSGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSG 267 (481)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhcccc
Confidence 35556665555566666654 4555555545444444455555555544443333
No 179
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.85 E-value=72 Score=26.98 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=10.7
Q ss_pred hhhhhhcccccccccccc
Q 019428 320 VNIRKLSFSEREEADEEK 337 (341)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (341)
.+...|.-.-+|||||||
T Consensus 135 ~~~~~Em~pL~~ddedeD 152 (163)
T PF06679_consen 135 RAENVEMAPLEEDDEDED 152 (163)
T ss_pred CcccceecccCCCccccc
Confidence 345666666666655554
No 180
>PRK09109 motC flagellar motor protein; Reviewed
Probab=25.63 E-value=53 Score=29.71 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CcchhhhHHHHHHHHHHHH
Q 019428 261 AMVTTARKAVTLLLSYLIFTK-PLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 261 si~~~l~~v~~ills~~~f~e-~~t~~~~iG~~lil~Gv~~ 300 (341)
+++|.+--+..++.|+++-|. .-...+.-++.++++|.+.
T Consensus 5 t~iG~~~~~~~v~~~~~~~gg~~~~~~~~~~~lIV~Ggt~~ 45 (246)
T PRK09109 5 SLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLG 45 (246)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHH
Confidence 344444444555555555343 3344666666666655543
No 181
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=25.56 E-value=5e+02 Score=23.43 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=28.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHH
Q 019428 249 LSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAM 296 (341)
Q Consensus 249 ~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~ 296 (341)
+.+-++-+++.......++-.+-++...+++.-.-.+....+++++..
T Consensus 113 ~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l 160 (249)
T PF10225_consen 113 AVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAIILLL 160 (249)
T ss_pred HhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 334445666666666677777777777777665555554444444333
No 182
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=25.51 E-value=79 Score=29.35 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHh-ccCCC
Q 019428 291 LLLIAMGITLKL-LPADD 307 (341)
Q Consensus 291 ~~lil~Gv~~y~-~~k~~ 307 (341)
.++.++|+++.. |.++|
T Consensus 12 G~IAIiaLLvhGlWtsRk 29 (324)
T COG3115 12 GAIAIIALLVHGLWTSRK 29 (324)
T ss_pred HHHHHHHHHHhhhhhcch
Confidence 345555666555 44333
No 183
>PRK11715 inner membrane protein; Provisional
Probab=25.41 E-value=6.7e+02 Score=24.82 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred ccccChhHH--HHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHHHhhhC
Q 019428 126 RRKYPAHEY--VSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDSFLGNLQEAIFTMN 187 (341)
Q Consensus 126 ~~k~s~~~~--~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~al~~v~~~~~~~~~ 187 (341)
+.|+++-|+ +|+.+++.=+.+.+.+|. ..++..+++.|+.+-++...+...+++..
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlSEH------igF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLSEH------IGFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788899996 566666666777777663 34567777888888888888877776653
No 184
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=24.86 E-value=26 Score=30.23 Aligned_cols=8 Identities=63% Similarity=1.153 Sum_probs=7.1
Q ss_pred Cccccccc
Q 019428 1 MKSKLGLC 8 (341)
Q Consensus 1 ~~~~~~~~ 8 (341)
||++||+|
T Consensus 137 ~ksrWGsc 144 (205)
T PF01863_consen 137 MKSRWGSC 144 (205)
T ss_pred hhhccccC
Confidence 68899999
No 185
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=24.40 E-value=30 Score=26.16 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=9.0
Q ss_pred hhhhhhcccccccccccc
Q 019428 320 VNIRKLSFSEREEADEEK 337 (341)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~ 337 (341)
+..|...+|++||+|+|+
T Consensus 61 ~p~E~ldg~deddaede~ 78 (96)
T PF15387_consen 61 APDEALDGDDEDDAEDEN 78 (96)
T ss_pred CchhhccCcccccccccc
Confidence 344445555555555443
No 186
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.27 E-value=2e+02 Score=26.82 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 019428 264 TTARKAVTLLLSYLIF 279 (341)
Q Consensus 264 ~~l~~v~~ills~~~f 279 (341)
..+.+..+++++++-+
T Consensus 257 F~l~Rl~tliiaVlt~ 272 (374)
T KOG1608|consen 257 FVLGRLGTLIIAVLTV 272 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 187
>COG4280 Predicted membrane protein [Function unknown]
Probab=24.24 E-value=4e+02 Score=23.46 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=10.5
Q ss_pred CCcchhhh-HHHHHHHHHH
Q 019428 281 KPLTEQHG-TGLLLIAMGI 298 (341)
Q Consensus 281 e~~t~~~~-iG~~lil~Gv 298 (341)
-|++..++ .|..+...|-
T Consensus 61 vPln~lqiv~gvLLllFG~ 79 (236)
T COG4280 61 VPLNYLQIVSGVLLLLFGY 79 (236)
T ss_pred eechHHHHHHHHHHHHHHH
Confidence 46666554 4666666663
No 188
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=24.13 E-value=1.5e+02 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhhhcccccccccc
Q 019428 286 QHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRKLSFSEREEADE 335 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (341)
...+.++.+++++++|.+...+-+..+ +.+|.++++++...+
T Consensus 55 ~~~~~~~w~~~A~~ly~~RP~s~R~~~--------~~~Kp~~~~~~~~~~ 96 (103)
T PF11027_consen 55 MFMMMMLWMVLAMALYLLRPSSLRSRS--------ADGKPSNNNNDGNPP 96 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCchhhcCCC--------CCCCCCCCccCCCCC
Confidence 455667777788888887554322221 334555555555544
No 189
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=24.06 E-value=61 Score=32.09 Aligned_cols=92 Identities=9% Similarity=-0.073 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCCCcccccccccchhhhhh
Q 019428 245 QVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADDKPIKRTATSSFKVNIRK 324 (341)
Q Consensus 245 ~~~~~~~i~~~sa~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~~~~~~~~~~~~~~~~~~ 324 (341)
-++-+.....++++-.++.....+++- --.--+-..+++..++..+++.=+.++.-.|--++|-.+-.+...++ ++
T Consensus 178 Gfsanl~~~~~D~Ll~GfTq~AA~iid---p~~~vnp~~NwyF~~as~~vl~~i~~fvTdKivEPRLg~~~~~~~~~-~~ 253 (516)
T COG2978 178 GFSANLLPGTIDPLLAGFTQPAAQIID---PSYQVNPLMNWYFIAASVFVLTLIGWFVTDKIIEPRLGPYQGLSSEA-ED 253 (516)
T ss_pred ccccccccCcchHHHHHhhHHHHHhcC---CccccCcchhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCcchhh-hh
Confidence 344455566677765555443333221 11112344577888888888888888887787776643322211111 33
Q ss_pred hcccccccccccccCC
Q 019428 325 LSFSEREEADEEKRAP 340 (341)
Q Consensus 325 ~~~~~~~~~~~~~~~~ 340 (341)
+..+.+|--|+|+|.+
T Consensus 254 ~~~~~~~~t~~Ekkgl 269 (516)
T COG2978 254 DENASQELTALEKKGL 269 (516)
T ss_pred hhhhhhhcCHHHhccc
Confidence 3334445556777653
No 190
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=24.02 E-value=83 Score=29.16 Aligned_cols=24 Identities=8% Similarity=-0.139 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHhccCCCCccc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~~ 311 (341)
++-.+++++|+++..|.++|.++.
T Consensus 10 ivig~i~i~~il~~~~~r~r~~~g 33 (293)
T PRK00269 10 IVIGIIVIAGILFDGWRRMRGGKG 33 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 344456777888778877654433
No 191
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=24.02 E-value=27 Score=31.13 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=7.0
Q ss_pred Ccccccccc
Q 019428 1 MKSKLGLCL 9 (341)
Q Consensus 1 ~~~~~~~~~ 9 (341)
||++||||-
T Consensus 148 ~k~~WGScs 156 (223)
T COG1451 148 MKRRWGSCS 156 (223)
T ss_pred ccceeeeec
Confidence 678888884
No 192
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.01 E-value=1.9e+02 Score=22.84 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=15.7
Q ss_pred chhhhHHHHHHHHHHHHHhccCC
Q 019428 284 TEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 284 t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
+...++|.+.++.+..+|-|...
T Consensus 40 ~ifmllG~L~~l~S~~VYfwIGm 62 (114)
T PF11023_consen 40 VIFMLLGLLAILASTAVYFWIGM 62 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556777777777777777644
No 193
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=23.34 E-value=36 Score=30.21 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=6.2
Q ss_pred hcccccccccccc
Q 019428 325 LSFSEREEADEEK 337 (341)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (341)
+.|+|+|||||+.
T Consensus 218 ~~d~e~~ee~~~~ 230 (267)
T KOG3879|consen 218 HEDNEPEEETEVP 230 (267)
T ss_pred cccCCCCcccCCC
Confidence 3444555555544
No 194
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.12 E-value=76 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=11.9
Q ss_pred hCCCcchhhhHHHHHHHHHHHHHhc
Q 019428 279 FTKPLTEQHGTGLLLIAMGITLKLL 303 (341)
Q Consensus 279 f~e~~t~~~~iG~~lil~Gv~~y~~ 303 (341)
.+.+.+...++++++.+. +.++..
T Consensus 62 i~~~~n~lf~~~i~~ll~-~~~~l~ 85 (115)
T PF10066_consen 62 IGRPPNLLFYLGILFLLV-IIFSLY 85 (115)
T ss_pred CCchhHHHHHHHHHHHHH-HHHHHH
Confidence 455666555555544443 333333
No 195
>PRK14397 membrane protein; Provisional
Probab=22.06 E-value=5.1e+02 Score=23.10 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 019428 160 MIGVIMISGALIMDSFLGNL 179 (341)
Q Consensus 160 ~~G~~l~l~a~~~~al~~v~ 179 (341)
..|--..++..+++.+...+
T Consensus 47 ~~G~~~gilv~~~D~lKG~l 66 (222)
T PRK14397 47 LCGTKWGVLTLVCDVLKGAV 66 (222)
T ss_pred HhchHHHHHHHHHHHHHHHH
Confidence 45666666666667665554
No 196
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=21.87 E-value=2.7e+02 Score=22.00 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=19.8
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 280 TKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 280 ~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
+++-....+++....+.|++.|+..-..
T Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~T~~~~~ 87 (139)
T PF08592_consen 60 SRPAARLLWLAAAALLLSIIPFTFLVNV 87 (139)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677788888888888877765433
No 197
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=21.46 E-value=4.6e+02 Score=21.47 Aligned_cols=28 Identities=4% Similarity=-0.308 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019428 158 FSMIGVIMISGALIMDSFLGNLQEAIFT 185 (341)
Q Consensus 158 ~~~~G~~l~l~a~~~~al~~v~~~~~~~ 185 (341)
....+.+..+++++.+.-|....||+.+
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 3466777888888888888877777643
No 198
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=21.27 E-value=7.6e+02 Score=23.95 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=6.4
Q ss_pred chhHHHHHHHHHH
Q 019428 21 NFSFALLGSSLVI 33 (341)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (341)
++.|.++..+...
T Consensus 15 ~~~w~i~~~~~~~ 27 (455)
T TIGR00892 15 GWGWVVLGATFVS 27 (455)
T ss_pred CcchHHHHHHHHH
Confidence 5556555444433
No 199
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=20.98 E-value=8e+02 Score=24.11 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=6.5
Q ss_pred HHHHHhhccccccc
Q 019428 116 MVMGAFIPGLRRKY 129 (341)
Q Consensus 116 ~ll~~l~~~~~~k~ 129 (341)
.+++.++ .+-|.
T Consensus 8 ~~~~~~~--~g~~~ 19 (433)
T PRK09412 8 IVLLAIF--LGARL 19 (433)
T ss_pred HHHHHHH--HhHhh
Confidence 3555566 45555
No 200
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=20.97 E-value=8.3e+02 Score=24.25 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=9.9
Q ss_pred CCcchhh--hHHHHHHHHHHHH
Q 019428 281 KPLTEQH--GTGLLLIAMGITL 300 (341)
Q Consensus 281 e~~t~~~--~iG~~lil~Gv~~ 300 (341)
++++... .+|+-..+.|+.+
T Consensus 166 ~g~~~f~il~VgIP~~~ig~l~ 187 (443)
T PRK12489 166 RHITLLDILAVTIPATLIGVLA 187 (443)
T ss_pred CCcCHHHHHHHHHHHHHHHHHH
Confidence 4555544 3445455555543
No 201
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.72 E-value=1.4e+02 Score=19.21 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcc
Q 019428 291 LLLIAMGITLKLLP 304 (341)
Q Consensus 291 ~~lil~Gv~~y~~~ 304 (341)
+++.+.|-.+|.-.
T Consensus 14 ~lv~~Tgy~iYtaF 27 (43)
T PF02468_consen 14 LLVSITGYAIYTAF 27 (43)
T ss_pred HHHHHHhhhhhhee
Confidence 33444444455443
No 202
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=20.63 E-value=5.5e+02 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCCC
Q 019428 273 LLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 273 lls~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
.+|..+|.|-.-+....|.++.++=+......+++
T Consensus 133 ~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~ 167 (186)
T MTH00057 133 VLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDL 167 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44777788888888889988776655555555443
No 203
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=20.39 E-value=8.2e+02 Score=26.99 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHHhhcccc-cccChhHHHHHHHHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHH
Q 019428 114 PVMVMGAFIPGLR-RKYPAHEYVSALLLVVGLILFTLADAQTSPNFSMIGVIMISGALIMDS 174 (341)
Q Consensus 114 ~v~ll~~l~~~~~-~k~s~~~~~~l~l~~~Gv~l~~~~~~~~~~~~~~~G~~l~l~a~~~~a 174 (341)
.+++.-++| +| -|.+....+++-+.+++..++.+--+-+-+.-++.|++++++-.+=+|
T Consensus 343 lv~~vl~lf--l~~~r~~liv~~~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDda 402 (1021)
T PF00873_consen 343 LVVLVLLLF--LRNWRSALIVALSIPISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDA 402 (1021)
T ss_dssp HHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhh--hcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccc
Confidence 344444555 54 477777777777777776666543222111235677777665444333
No 204
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.13 E-value=1.3e+03 Score=26.38 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 019428 134 YVSALLLVVGL 144 (341)
Q Consensus 134 ~~~l~l~~~Gv 144 (341)
..++++.++++
T Consensus 25 ~~gIlLlllAl 35 (1355)
T PRK10263 25 ALLILIVLFAV 35 (1355)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!