Query 019428
Match_columns 341
No_of_seqs 229 out of 1928
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 6.8E-09 2.3E-13 84.2 7.4 70 236-305 35-105 (137)
2 3b5d_A Multidrug transporter E 98.3 6.5E-06 2.2E-10 64.0 10.0 68 238-305 37-105 (110)
3 3b5d_A Multidrug transporter E 98.2 1E-05 3.4E-10 63.0 9.2 71 79-151 34-105 (110)
4 2i68_A Protein EMRE; transmemb 97.9 1.1E-05 3.7E-10 65.2 5.4 68 82-151 37-105 (137)
5 3rko_J NADH-quinone oxidoreduc 66.7 54 0.0018 27.1 11.0 34 273-306 128-161 (184)
6 4djk_A Probable glutamate/gamm 38.9 33 0.0011 32.5 5.1 19 288-306 449-467 (511)
7 2b6o_A Aquaporin-0, lens fiber 36.9 13 0.00044 32.7 1.7 21 285-305 202-223 (263)
8 2l2t_A Receptor tyrosine-prote 30.9 49 0.0017 20.5 3.1 9 294-302 26-34 (44)
9 3l1l_A Arginine/agmatine antip 24.7 58 0.002 30.0 4.0 24 286-309 409-432 (445)
10 3izc_W 60S ribosomal protein R 23.9 16 0.00055 28.0 -0.1 11 326-336 111-121 (121)
11 3u5c_J 40S ribosomal protein S 23.7 11 0.00038 31.7 -1.1 12 325-336 186-197 (197)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.83 E-value=6.8e-09 Score=84.17 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 236 FEAMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 236 l~~~~~~l~~~~~~~~i~~~sa~t~si~-~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
+..++..+++.++..++++.++..+..+ ..+.|+++.++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3446667888999999999999988777 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.25 E-value=6.5e-06 Score=64.05 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHHhccC
Q 019428 238 AMATFIGQVSVLSLIALFGAATTAMV-TTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPA 305 (341)
Q Consensus 238 ~~~~~l~~~~~~~~i~~~sa~t~si~-~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k 305 (341)
.++..+++.++..++|+.+...+..+ ..+.|+.+.++|+++|||++|+.+++|+.+++.|+...+..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44556777888889999999888666 899999999999999999999999999999999999887643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.16 E-value=1e-05 Score=62.98 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=62.8
Q ss_pred HHHHHHHHhhHHHHHHhhcCCchhHHHHH-hhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 79 VKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 79 ~~~~~~~~~~~~l~~~sl~~is~~~~~l~-ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
+...+++..+..+...++++.+.+.+..+ ....|+.+.++++++ +||++++.|++++.++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33345678889999999999999988766 899999999999999 999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.92 E-value=1.1e-05 Score=65.23 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHhhHHHHHHhhcCCchhHHHHH-hhcchHHHHHHHHhhcccccccChhHHHHHHHHHHHHHHHhccC
Q 019428 82 SAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 151 (341)
Q Consensus 82 ~~~~~~~~~l~~~sl~~is~~~~~l~-ks~~pv~v~ll~~l~~~~~~k~s~~~~~~l~l~~~Gv~l~~~~~ 151 (341)
.++++++..+.+.++++++.+.+..+ ....|++++++++++ ++|++++.++++++++++|+.+....+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44688999999999999999977666 899999999999999 999999999999999999999987644
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=66.70 E-value=54 Score=27.10 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=24.6
Q ss_pred HHHHHhhCCCcchhhhHHHHHHHHHHHHHhccCC
Q 019428 273 LLSYLIFTKPLTEQHGTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 273 lls~~~f~e~~t~~~~iG~~lil~Gv~~y~~~k~ 306 (341)
-+|..+|++-+=+...+|+++..+=+......|+
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778889999999999999887554444444443
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=38.89 E-value=33 Score=32.52 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 019428 288 GTGLLLIAMGITLKLLPAD 306 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~ 306 (341)
..+..+++.++.++.+.++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555544433
No 7
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=36.95 E-value=13 Score=32.71 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=9.8
Q ss_pred hhhhHHHHH-HHHHHHHHhccC
Q 019428 285 EQHGTGLLL-IAMGITLKLLPA 305 (341)
Q Consensus 285 ~~~~iG~~l-il~Gv~~y~~~k 305 (341)
|..|+|=.+ .+.|.++|....
T Consensus 202 Wvy~vgP~~Ga~la~~~y~~l~ 223 (263)
T 2b6o_A 202 WVYWVGPVIGAGLGSLLYDFLL 223 (263)
T ss_dssp THHHHHHHHHHHHHHHHHHTTT
T ss_pred eHHHHHHHHHHHHHHHHHHHHh
Confidence 444555432 233455665543
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.92 E-value=49 Score=20.52 Aligned_cols=9 Identities=0% Similarity=0.313 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 019428 294 IAMGITLKL 302 (341)
Q Consensus 294 il~Gv~~y~ 302 (341)
+..++++|.
T Consensus 26 i~~~~~~~~ 34 (44)
T 2l2t_A 26 VGLTFAVYV 34 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.72 E-value=58 Score=30.05 Aligned_cols=24 Identities=4% Similarity=-0.082 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCc
Q 019428 286 QHGTGLLLIAMGITLKLLPADDKP 309 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k~~~~ 309 (341)
....|..+++.|+.+|.+.+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456688889999999987665433
No 10
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=23.86 E-value=16 Score=28.00 Aligned_cols=11 Identities=55% Similarity=0.616 Sum_probs=0.0
Q ss_pred ccccccccccc
Q 019428 326 SFSEREEADEE 336 (341)
Q Consensus 326 ~~~~~~~~~~~ 336 (341)
.+||+||||||
T Consensus 111 ~~de~eee~e~ 121 (121)
T 3izc_W 111 TPEEDEEEDEE 121 (121)
T ss_dssp -----------
T ss_pred CCCcccccccC
Confidence 34555555554
No 11
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=23.70 E-value=11 Score=31.66 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=0.4
Q ss_pred hccccccccccc
Q 019428 325 LSFSEREEADEE 336 (341)
Q Consensus 325 ~~~~~~~~~~~~ 336 (341)
..+|++||+|||
T Consensus 186 ~~~~~~~~~~~~ 197 (197)
T 3u5c_J 186 EAADEADEADEE 197 (197)
T ss_dssp C-----------
T ss_pred CCCccccccccC
Confidence 445555555554
Done!