Query 019428
Match_columns 341
No_of_seqs 229 out of 1928
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 15:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019428.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019428hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 26.9 1.5E+02 0.011 24.0 18.9 22 286-307 186-207 (447)
2 d1kqfb2 f.23.22.1 (B:246-290) 20.2 13 0.00093 21.8 0.5 22 279-300 8-29 (45)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.5 80 0.0058 21.5 3.0 22 289-310 43-64 (107)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 10.9 80 0.0058 15.5 1.9 16 288-303 2-17 (27)
5 d1iwga8 f.35.1.1 (A:513-566,A: 10.7 2.8E+02 0.02 20.9 6.7 30 270-299 96-125 (222)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 10.4 76 0.0055 21.3 2.5 23 288-310 36-58 (100)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 9.2 1.3E+02 0.0091 22.7 3.8 45 257-301 65-109 (199)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.5 4.3E+02 0.031 20.5 7.7 54 77-136 4-57 (248)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 7.9 1.2E+02 0.0086 24.8 3.4 8 127-134 84-91 (447)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 5.9 81 0.0059 20.8 0.9 22 290-311 27-48 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.95 E-value=1.5e+02 Score=24.02 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHhccCCC
Q 019428 286 QHGTGLLLIAMGITLKLLPADD 307 (341)
Q Consensus 286 ~~~iG~~lil~Gv~~y~~~k~~ 307 (341)
....+...++.++..+...+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp THHHHHHHHHHHHHHHHHCCCS
T ss_pred chhhhhhHHHHHHHHHHhcccc
Confidence 3444555556666655554433
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=20.21 E-value=13 Score=21.78 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=12.8
Q ss_pred hCCCcchhhhHHHHHHHHHHHH
Q 019428 279 FTKPLTEQHGTGLLLIAMGITL 300 (341)
Q Consensus 279 f~e~~t~~~~iG~~lil~Gv~~ 300 (341)
......+...+|+....++.++
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665544
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.48 E-value=80 Score=21.50 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcc
Q 019428 289 TGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 289 iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
.++.+.+.|+..|...|+|+++
T Consensus 43 ~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 3444456666777666655443
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.88 E-value=80 Score=15.53 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHhc
Q 019428 288 GTGLLLIAMGITLKLL 303 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~ 303 (341)
.+|.+++-.|.++|.-
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3566666555555543
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.69 E-value=2.8e+02 Score=20.95 Aligned_cols=30 Identities=17% Similarity=-0.040 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCCcchhhhHHHHHHHHHHH
Q 019428 270 VTLLLSYLIFTKPLTEQHGTGLLLIAMGIT 299 (341)
Q Consensus 270 ~~ills~~~f~e~~t~~~~iG~~lil~Gv~ 299 (341)
...+.+..+.+.+++....+|.++.++...
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 455667778899999999888888665554
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.42 E-value=76 Score=21.27 Aligned_cols=23 Identities=4% Similarity=-0.139 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhccCCCCcc
Q 019428 288 GTGLLLIAMGITLKLLPADDKPI 310 (341)
Q Consensus 288 ~iG~~lil~Gv~~y~~~k~~~~~ 310 (341)
..++.+.+.|+..|...|+|+++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 34455556677777766655443
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.23 E-value=1.3e+02 Score=22.75 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhhHHHHHHHHHHHHH
Q 019428 257 AATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLLLIAMGITLK 301 (341)
Q Consensus 257 a~t~si~~~l~~v~~ills~~~f~e~~t~~~~iG~~lil~Gv~~y 301 (341)
+.-...+...-.+........++|.+++.....+..+.++...-|
T Consensus 65 ~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 65 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333334444444555566667788999998888888777766544
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.45 E-value=4.3e+02 Score=20.50 Aligned_cols=54 Identities=17% Similarity=-0.015 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCCchhHHHHHhhcchHHHHHHHHhhcccccccChhHHHH
Q 019428 77 TYVKLSAVLMGSHGLTKGSLAFLNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPAHEYVS 136 (341)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~sl~~is~~~~~l~ks~~pv~v~ll~~l~~~~~~k~s~~~~~~ 136 (341)
+|+.++++..+..+.....+..=+...+.+ ..+.+.++.+++ +.+|.-..+++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy--~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIF--ANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHH--SSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEE--EccCccceehhh
Confidence 456667776666665555555545444432 233455666777 677766666643
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=1.2e+02 Score=24.81 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.6
Q ss_pred cccChhHH
Q 019428 127 RKYPAHEY 134 (341)
Q Consensus 127 ~k~s~~~~ 134 (341)
+|+.+++.
T Consensus 84 Dr~g~r~~ 91 (447)
T d1pw4a_ 84 DRSNPRVF 91 (447)
T ss_dssp HHSCHHHH
T ss_pred HHcCchHH
Confidence 44444443
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.95 E-value=81 Score=20.78 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhccCCCCccc
Q 019428 290 GLLLIAMGITLKLLPADDKPIK 311 (341)
Q Consensus 290 G~~lil~Gv~~y~~~k~~~~~~ 311 (341)
.+.+...|.++|...|+|+++.
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHhhheeeeccCC
Confidence 3445667778888888775543
Done!