BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019429
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/207 (88%), Positives = 200/207 (96%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
VFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+I
Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 145
TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIEN
Sbjct: 193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 252
Query: 146 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 205
MQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312
Query: 206 FCKLHISYSRHTDLSIKVNNDRSRDYT 232
FCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 313 FCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Query: 137 NVLLASIE-NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 195
NVLL +IE + V++DVLH+VFSAFG V KI F+K G QAL+Q+ D +TA AK A
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 196 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 249
L+G I G C L I+YS HTDL++K + RSRDYT P P+ S GQ
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQV 230
Query: 250 PVPMVG 255
V + G
Sbjct: 231 AVGVDG 236
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 343 bits (879), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 207/286 (72%), Gaps = 29/286 (10%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
VFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL ++G C+LR+
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 145
+YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL IEN
Sbjct: 192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIEN 251
Query: 146 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 205
MQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHCIYDGG
Sbjct: 252 MQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGG 311
Query: 206 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 265
+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V +A
Sbjct: 312 YCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVSGSA------- 357
Query: 266 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 311
PP AGW P A G PYM P S P G
Sbjct: 358 ----PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 7/109 (6%)
Query: 137 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 195
NVLL + E ++ + V++DV+H+VFSAFG V KIA F+K G QAL+Q+ DV+TA A+ A
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 196 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 238
L+G I G C L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 218
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 188
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 189 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 248
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 249 QPVPMVGA----TANQYNGAQFAP 268
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 7/87 (8%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLP 111
I +S T L+VK+ + +SRDYT P LP
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLP 281
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 188
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 189 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 253
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 127
I +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 254 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 188
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 189 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 253
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 115
I +S T L+VK+ + +SRDYT P LP S
Sbjct: 254 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 284
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 26 VFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+F +G V ++ F K ALV+ +D A A + L+G + ++R
Sbjct: 381 LFGVYGDVQRVKILFNKKE--NALVEMADGSQAQLAMSHLNGHKLHGK---------SVR 429
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 144
IT S H + + + + T Y G + + + P S L +
Sbjct: 430 ITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNF----QNIFPPSATL--HLS 483
Query: 145 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204
N+ +V+ D L +FS+ G V K F + ALIQ V+ AV A L H + G
Sbjct: 484 NIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDL--G 541
Query: 205 GFCKLHISYSRHT 217
L +S+S+ T
Sbjct: 542 ENHHLRVSFSKST 554
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 188
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 189 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 44/228 (19%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE--------- 133
I +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIP 314
Query: 134 -------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK 173
++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 315 SAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKVLFNK 373
Query: 174 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 221
AL+Q D A +A L GH ++ + I+ S+H + +
Sbjct: 374 KE--NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQSVQL 416
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 188
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 189 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 44/228 (19%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE--------- 133
I +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIP 314
Query: 134 -------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 173
++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 315 SAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNK 373
Query: 174 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 221
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 374 KE--NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 416
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ESNV 138
I YS H +L ++ + N V A+ A + L G + +S V
Sbjct: 128 IQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180
Query: 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 198
L I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240
Query: 199 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 241 QNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 124
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 125 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 169
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 170 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216
+ N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 412
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ESNV 138
I YS H +L ++ + N V A+ A + L G + +S V
Sbjct: 128 IQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPV 180
Query: 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 198
L I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 181 LRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDG 240
Query: 199 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 241 QNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 124
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 125 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 169
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 170 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216
+ N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 412
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 120 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 175
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 176 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 235
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 236 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 295
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 296 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 324
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVSAVPGALG 304
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLR 223
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLP 111
I +S T L+VK+ + +SRD+T LP
Sbjct: 224 IDFSKLTSLNVKYNNDKSRDFTRLDLP 250
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 26 VFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+F +G VH++ F K ALVQ +D A A N L G+ + +L R
Sbjct: 349 LFGVYGDVHRVKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLYGKVL---------R 397
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 144
T S H + + + + T + G + + + P S L +
Sbjct: 398 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL--HLS 451
Query: 145 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204
N+ +VT+D L +F+ G K F + ALIQ V+ A+ A L H + G
Sbjct: 452 NIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL--G 509
Query: 205 GFCKLHISYSRHT 217
L +S+S+ T
Sbjct: 510 ENHHLRVSFSKST 522
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 38/212 (17%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
+F FG + K+ A QAL+Q D +A SA N+ P T+R
Sbjct: 25 LFQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP-TIR- 69
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 145
++ V+F SH+ + I+ + + G++ EP + +LL +I +
Sbjct: 70 ----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILLVTIHH 107
Query: 146 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 205
M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G IYDG
Sbjct: 108 MLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGC 167
Query: 206 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 237
C+L I +S +L + NNDRSRDYT P+ P
Sbjct: 168 -CQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 39/219 (17%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLDI 172
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS--G 121
+S +L V + + RSRDYTNP LP SAI A+ G
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 232
Query: 122 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 181
L G+ G VL++++ ++ D L +FS +G + +I + +N AL+
Sbjct: 233 GLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 287
Query: 182 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 220
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 QMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 112/219 (51%), Gaps = 36/219 (16%)
Query: 120 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 175
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 176 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 235
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 236 TPMVNSQPSILGQQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWG--A 286
P + QPS+ +P PM G ++ Y GA FAP + P AAG A
Sbjct: 249 LPTGDGQPSL---EP-PMAAAFGAPGIMSSPYAGAAGFAPA------IAFPQAAGLSVPA 298
Query: 287 VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGM 325
VP A + P ++ +M +PG SGM
Sbjct: 299 VPGA------------LGPLTLTSSAVSGRMAIPGASGM 325
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 101/234 (43%), Gaps = 68/234 (29%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLR 223
Query: 85 ITYSAHTDLSVKFQSHRSRDYT----------------------------NPY------- 109
I +S T L+VK+ + +SRD+T +PY
Sbjct: 224 IDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFA 283
Query: 110 ------------LPVAPSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYA 149
+P P A+ SG++++ G P ++VLL + N +
Sbjct: 284 PAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF- 340
Query: 150 VTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 202
+T L ++F +G V ++ MF+K AL+Q D A +A L G +Y
Sbjct: 341 ITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 392
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 26 VFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+F +G VH++ F K ALVQ +D A A N L G+ + +L R
Sbjct: 349 LFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLYGKVL---------R 397
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 144
T S H + + + + T + G + + + P S L +
Sbjct: 398 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL--HLS 451
Query: 145 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204
N+ +VT+D L +F+ G K F + ALIQ V+ A+ A L H + G
Sbjct: 452 NIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL--G 509
Query: 205 GFCKLHISYSRHT 217
L +S+S+ T
Sbjct: 510 ENHHLRVSFSKST 522
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 194
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 195 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 48/227 (21%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 124
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 125 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 169
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 170 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216
+ N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 412
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 128 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 187
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 171 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 230
Query: 188 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 245
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 231 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 287
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 25 HVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 200 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLR 252
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLP 111
I +S T L+VK+ + +SRD+T LP
Sbjct: 253 IDFSKLTSLNVKYNNDKSRDFTRLDLP 279
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 20/193 (10%)
Query: 26 VFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84
+F +G VH++ F K ALVQ +D A A N L G+ + +L R
Sbjct: 378 LFGVYGDVHRVKIMFNKKE--NALVQMADANQAQLAMNHLSGQRLYGKVL---------R 426
Query: 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 144
T S H + + + + T + G + + + P S L +
Sbjct: 427 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL--HLS 480
Query: 145 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204
N+ +VT+D L +F G K F + ALIQ V+ A+ A L H + G
Sbjct: 481 NIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL--G 538
Query: 205 GFCKLHISYSRHT 217
L +S+S+ T
Sbjct: 539 ENHHLRVSFSKST 551
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 109 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 166
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 167 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 226
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 227 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 271
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 31 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 90
G V +I F K G QA+V+F ++A AK +L+G I G CTL+I Y+
Sbjct: 219 GPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIEYAKP 270
Query: 91 TDLSVKFQSHRSRDYTNPYL 110
T L+V + DYTNP L
Sbjct: 271 TRLNVFKNDQDTWDYTNPNL 290
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 109 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 166
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 167 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 226
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 227 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 271
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 31 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 90
G V +I F K G QA+V+F ++A AK +L+G I G CTL+I Y+
Sbjct: 216 GPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIEYAKP 267
Query: 91 TDLSVKFQSHRSRDYTNPYL 110
T L+V + DYTNP L
Sbjct: 268 TRLNVFKNDQDTWDYTNPNL 287
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 195
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 196 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 255
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 256 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 305
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 306 GSMPMGPGMMQMHM 319
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYL 110
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 195
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 196 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 255
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 256 ATANQYNGAQFAP-----PPPEQPMMHQPTAAGWGAVP-PASQSMPMMGNHPYMPPGSMP 309
+ + + P P + M A P P + S M G P GS+
Sbjct: 330 DHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGS---PSGSVV 386
Query: 310 MGPGMMQMHM 319
M G+ Q+ M
Sbjct: 387 MVSGLHQLKM 396
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 26 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 288
Query: 86 TYSAHTDLSVKFQSHRSRDYTNPYL 110
Y+ T L+V + S DYT PYL
Sbjct: 289 EYARPTRLNVIRNDNDSWDYTKPYL 313
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 154 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213
+LH FG ++++ + AL+++ + A KE L+G + ++ I Y
Sbjct: 224 ILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN---PRIKIMY 278
Query: 214 S------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGATANQYNGAQ 265
S D S RSR + P S P G P+ G YNGA+
Sbjct: 279 SNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTNERSYNGAE 338
Query: 266 FAPPPPEQPMMHQPTAAGWGAVP 288
+ ++P +P+A G G +P
Sbjct: 339 YNDVVGKEPNWRRPSANGTGILP 361
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 110 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 169
L + P D SG S L L PE+ T L +F +G + +I
Sbjct: 3 LSMKPFRADDSGFQSNNLWVGSLTPET--------------TESDLTELFGRYGDIDRIT 48
Query: 170 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215
++ G A I Y V+ AV AKEAL+G + ++ I Y+R
Sbjct: 49 VYSSRGF--AFIYYRHVEEAVAAKEALQGANL---NGSQIKIEYAR 89
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 75/205 (36%), Gaps = 57/205 (27%)
Query: 143 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFDKNGGL--QALIQYPDVQTAVVAKEAL 196
I N+ + D L+ +FS FG + I + +N + QA + + + +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDI-LVSRNLKMRGQAFVIFKETSSATNALRSM 72
Query: 197 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMVNSQPSILGQQP 250
+G YD + I YS+ +D+ K V DR R +
Sbjct: 73 QGFPFYD---KPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKR--------------KVK 115
Query: 251 VPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPM 310
VP V N GA P P Q A Q MP M P M
Sbjct: 116 VPEVQGVKNAMPGAALLPGVPGQM--------------AAMQDMPGMTQAPRM------- 154
Query: 311 GPGMMQMHMPGQSGMQHHHGAMPPP 335
MHM GQ+ HH G MPPP
Sbjct: 155 ------MHMAGQAPYMHHPGMMPPP 173
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDV 186
G KL PE N +L I+N+ Y +T + ++ +F FG V++I + + + G A + Y D+
Sbjct: 10 GAKLPPEVNRIL-YIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRG-TAFVVYEDI 67
Query: 187 QTAVVAKEALEGHCI 201
A A E L G+ +
Sbjct: 68 FDAKTACEHLSGYNV 82
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 143 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 202
+ N+ + +H +FSA+G V+ I M + A++ Y + +A+VA++AL ++
Sbjct: 4 VSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS--AIVSYESLSSAIVARDALHNRPVF 61
Query: 203 DG 204
+
Sbjct: 62 EN 63
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 37/200 (18%)
Query: 26 VFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83
+FS FG + + + K G QA V FS+ A A + ++ P Y P +
Sbjct: 33 LFSQFGRILDVVALKTPKLRG-QAWVTFSEVTAAGHAVRQM--QNFPFYDKP-------M 82
Query: 84 RITYS-AHTDLSVKFQ----------------SHRSRDYTNPYLPVAPSAIDASGQLSVG 126
R+ Y+ A +D K + + D P PSA S V
Sbjct: 83 RLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVP 142
Query: 127 L-----DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 181
G++ P +N+L I+N+ + T +L ++F + ++I M D G+ A +
Sbjct: 143 APSFQPSGQETMPPNNILF--IQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI-AFV 199
Query: 182 QYPDVQTAVVAKEALEGHCI 201
+Y D A +A + L+G I
Sbjct: 200 EYEDDVQASIAMQPLQGFKI 219
>sp|Q9WUF3|C8AP2_MOUSE CASP8-associated protein 2 OS=Mus musculus GN=Casp8ap2 PE=1 SV=2
Length = 1962
Score = 35.8 bits (81), Expect = 0.50, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 74 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 133
+PE G C R + T + S +R+ T LP A+ A+ QL + + K++
Sbjct: 578 VPEPSGTCDSRSLETTGTVACLPSGSEHNREETKSELPEPKEALLATSQLRISIPENKMK 637
Query: 134 PESNVLLASIEN 145
E +L S+EN
Sbjct: 638 EEKRLLFKSVEN 649
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 143 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 196
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 197 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 249
+G YD + I Y++ +D+ K V DR R+ P + S+ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQGGA 129
Query: 250 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 309
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGAVQ--------GPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 310 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 337
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1
PE=1 SV=4
Length = 1298
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 39/232 (16%)
Query: 110 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 169
L P ++ G V L ++E + + ++ N Q T V H + V K
Sbjct: 502 LANGPDVLETDGLQEVPLCSCRMETPKSREITTLANNQCMATESVDHELGRCTNSVVKYE 561
Query: 170 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY---DGGFCKLH----ISYSRHTDLSIK 222
+ + L+ D + +V + G C Y G F + IS+ H D + +
Sbjct: 562 LMRPSNKAPLLVLCEDHRGRMVKHQCCPG-CGYFCTAGNFMECQPESSISHRFHKDCASR 620
Query: 223 VNN-----------DRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPP 271
VNN ++++ T+ ++ + GQ+ + A+
Sbjct: 621 VNNASYCPHCGEESSKAKEVTIAKADTTSTVTPVPGQEKGSALEGRAD------------ 668
Query: 272 EQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQS 323
T G A PP S+ + G ++P G P GP + PG S
Sbjct: 669 --------TTTGSAAGPPLSEDDKLQGAASHVPEGFDPTGPAGLGRPTPGLS 712
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 143 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 196
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 197 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 249
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGG 129
Query: 250 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 309
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 ATPVVGAVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 310 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 337
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 38/210 (18%)
Query: 143 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 196
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 197 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 249
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGA 129
Query: 250 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 309
P+VG P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGTVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLP 181
Query: 310 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 337
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,763,136
Number of Sequences: 539616
Number of extensions: 5945888
Number of successful extensions: 20496
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 496
Number of HSP's that attempted gapping in prelim test: 18439
Number of HSP's gapped (non-prelim): 2021
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)