Query 019429
Match_columns 341
No_of_seqs 257 out of 1551
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190 Polypyrimidine tract-b 100.0 2.9E-36 6.4E-41 279.1 11.4 228 4-248 27-259 (492)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-34 3.7E-39 288.1 24.1 191 5-237 2-194 (481)
3 KOG0117 Heterogeneous nuclear 100.0 2.7E-32 5.9E-37 255.4 24.0 200 6-222 84-336 (506)
4 KOG1190 Polypyrimidine tract-b 100.0 8E-33 1.7E-37 256.3 18.6 215 8-236 153-392 (492)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.7E-31 1E-35 263.4 23.5 199 7-219 98-353 (481)
6 TIGR01659 sex-lethal sex-letha 100.0 1.1E-30 2.3E-35 249.0 23.4 162 4-218 106-276 (346)
7 KOG0148 Apoptosis-promoting RN 100.0 1.6E-30 3.4E-35 230.0 18.8 176 5-220 62-241 (321)
8 KOG1456 Heterogeneous nuclear 100.0 2.1E-29 4.6E-34 231.2 19.1 213 7-263 33-255 (494)
9 TIGR01628 PABP-1234 polyadenyl 100.0 3.9E-28 8.4E-33 247.1 22.9 181 6-219 179-366 (562)
10 TIGR01645 half-pint poly-U bin 99.9 3.9E-27 8.4E-32 236.2 18.3 169 5-217 107-284 (612)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.2E-26 4.8E-31 220.9 22.8 199 6-218 90-350 (352)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1E-26 2.2E-31 223.2 18.1 160 6-218 4-172 (352)
13 TIGR01628 PABP-1234 polyadenyl 99.9 2.2E-25 4.8E-30 226.9 17.0 156 7-215 2-165 (562)
14 TIGR01622 SF-CC1 splicing fact 99.9 5.1E-25 1.1E-29 218.8 18.4 169 5-217 89-266 (457)
15 KOG0144 RNA-binding protein CU 99.9 1.9E-25 4E-30 208.8 12.5 165 8-220 37-209 (510)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 1E-24 2.3E-29 218.3 18.2 164 5-219 138-309 (578)
17 KOG0145 RNA-binding protein EL 99.9 3.6E-25 7.7E-30 195.1 12.2 158 7-217 43-209 (360)
18 KOG0109 RNA-binding protein LA 99.9 6.7E-24 1.5E-28 189.7 10.6 146 7-216 4-149 (346)
19 KOG0131 Splicing factor 3b, su 99.9 1.1E-23 2.4E-28 177.0 10.6 160 7-220 11-180 (203)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-22 2.5E-27 204.5 18.9 187 5-218 295-503 (509)
21 TIGR01648 hnRNP-R-Q heterogene 99.9 6.2E-23 1.3E-27 205.6 16.5 153 5-217 58-222 (578)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-22 2.7E-27 204.2 19.0 184 5-217 175-375 (509)
23 KOG1456 Heterogeneous nuclear 99.9 4.8E-22 1E-26 183.0 19.6 198 8-220 125-366 (494)
24 TIGR01622 SF-CC1 splicing fact 99.9 4.1E-22 8.9E-27 198.0 18.8 198 5-218 186-449 (457)
25 KOG4206 Spliceosomal protein s 99.9 2.3E-21 5E-26 168.9 16.7 194 6-215 10-220 (221)
26 KOG0127 Nucleolar protein fibr 99.9 2.6E-21 5.6E-26 185.7 14.9 177 6-217 6-196 (678)
27 KOG0127 Nucleolar protein fibr 99.9 6.7E-21 1.5E-25 182.8 17.6 195 7-217 119-378 (678)
28 KOG0145 RNA-binding protein EL 99.9 2.2E-20 4.8E-25 164.9 15.8 195 5-216 127-357 (360)
29 KOG0110 RNA-binding protein (R 99.8 1.3E-20 2.9E-25 185.9 13.6 168 4-218 515-694 (725)
30 KOG0123 Polyadenylate-binding 99.8 5E-19 1.1E-23 169.9 16.1 152 7-221 3-157 (369)
31 KOG0124 Polypyrimidine tract-b 99.8 1E-19 2.3E-24 167.2 7.8 163 4-214 113-287 (544)
32 KOG0146 RNA-binding protein ET 99.8 2.2E-18 4.9E-23 152.8 14.4 202 4-218 18-366 (371)
33 KOG0123 Polyadenylate-binding 99.8 2.2E-18 4.8E-23 165.5 14.2 161 8-216 79-245 (369)
34 TIGR01645 half-pint poly-U bin 99.8 4.8E-17 1E-21 163.7 20.5 76 5-90 204-283 (612)
35 KOG1457 RNA binding protein (c 99.7 8.5E-17 1.8E-21 139.5 12.5 190 5-203 34-275 (284)
36 KOG0144 RNA-binding protein CU 99.7 1.2E-16 2.6E-21 150.1 14.0 79 3-90 122-205 (510)
37 KOG0148 Apoptosis-promoting RN 99.7 2.6E-16 5.6E-21 140.0 9.0 133 5-218 6-143 (321)
38 KOG0147 Transcriptional coacti 99.6 4.8E-16 1E-20 150.2 9.0 168 6-215 180-356 (549)
39 KOG0110 RNA-binding protein (R 99.6 4.5E-15 9.7E-20 147.1 14.1 189 6-215 386-596 (725)
40 KOG4205 RNA-binding protein mu 99.6 1.3E-15 2.8E-20 142.1 9.3 165 6-221 7-180 (311)
41 KOG0147 Transcriptional coacti 99.6 4.1E-15 8.9E-20 143.8 13.0 199 6-220 279-531 (549)
42 KOG0105 Alternative splicing f 99.6 1.6E-14 3.4E-19 122.2 14.2 171 5-203 6-177 (241)
43 KOG0106 Alternative splicing f 99.6 4E-15 8.6E-20 131.1 7.7 160 7-213 3-167 (216)
44 PLN03134 glycine-rich RNA-bind 99.6 7.1E-15 1.5E-19 123.6 8.7 76 6-91 35-114 (144)
45 PLN03134 glycine-rich RNA-bind 99.6 4.2E-14 9.1E-19 118.9 12.6 76 136-217 34-114 (144)
46 KOG4212 RNA-binding protein hn 99.5 9.2E-13 2E-17 124.2 16.2 195 5-215 44-292 (608)
47 PF00076 RRM_1: RNA recognitio 99.5 4.6E-14 9.9E-19 102.9 5.8 67 8-84 1-70 (70)
48 PF00076 RRM_1: RNA recognitio 99.4 2.2E-13 4.7E-18 99.3 7.0 66 141-210 1-70 (70)
49 KOG0114 Predicted RNA-binding 99.4 1.4E-13 3E-18 106.0 5.8 81 5-95 18-99 (124)
50 KOG1548 Transcription elongati 99.4 3.5E-12 7.5E-17 117.4 15.2 176 7-216 136-351 (382)
51 KOG0107 Alternative splicing f 99.4 4.6E-13 9.9E-18 112.5 7.9 75 140-218 12-86 (195)
52 PF13893 RRM_5: RNA recognitio 99.4 7.9E-13 1.7E-17 92.9 7.9 56 155-214 1-56 (56)
53 KOG4211 Splicing factor hnRNP- 99.4 3.5E-12 7.6E-17 122.3 14.4 160 8-215 13-180 (510)
54 PF13893 RRM_5: RNA recognitio 99.4 8.5E-13 1.8E-17 92.7 7.2 56 23-88 1-56 (56)
55 TIGR01659 sex-lethal sex-letha 99.4 1.6E-12 3.4E-17 124.4 10.4 78 134-217 105-187 (346)
56 KOG0125 Ataxin 2-binding prote 99.4 6.2E-13 1.4E-17 121.5 6.9 77 5-91 96-174 (376)
57 PLN03120 nucleic acid binding 99.4 1.2E-12 2.5E-17 118.4 8.4 74 6-90 5-79 (260)
58 KOG0122 Translation initiation 99.3 2.9E-12 6.3E-17 113.0 8.4 77 135-217 188-269 (270)
59 KOG0132 RNA polymerase II C-te 99.3 1.7E-10 3.6E-15 115.8 21.7 75 5-91 421-495 (894)
60 PF14259 RRM_6: RNA recognitio 99.3 1.8E-12 3.8E-17 95.0 5.7 67 8-84 1-70 (70)
61 KOG0114 Predicted RNA-binding 99.3 5.9E-12 1.3E-16 97.1 8.5 77 136-218 18-96 (124)
62 COG0724 RNA-binding proteins ( 99.3 1.3E-11 2.8E-16 112.1 12.1 142 5-174 115-261 (306)
63 KOG0124 Polypyrimidine tract-b 99.3 5.2E-11 1.1E-15 110.3 15.4 73 7-89 212-288 (544)
64 KOG0107 Alternative splicing f 99.3 3.6E-12 7.7E-17 107.2 6.8 75 6-91 11-85 (195)
65 KOG0149 Predicted RNA-binding 99.3 2.8E-12 6E-17 112.7 6.0 72 7-89 14-89 (247)
66 PLN03120 nucleic acid binding 99.3 1.2E-11 2.6E-16 111.9 10.0 71 141-216 7-79 (260)
67 PLN03213 repressor of silencin 99.3 4.3E-12 9.4E-17 121.3 7.3 76 6-91 11-88 (759)
68 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.4E-16 90.8 7.6 66 141-210 1-70 (70)
69 KOG0120 Splicing factor U2AF, 99.3 1.9E-11 4E-16 119.8 10.9 180 5-218 289-493 (500)
70 KOG0121 Nuclear cap-binding pr 99.3 8.7E-12 1.9E-16 99.7 6.6 73 136-214 36-113 (153)
71 smart00362 RRM_2 RNA recogniti 99.3 2E-11 4.3E-16 88.2 7.6 70 7-86 1-72 (72)
72 KOG0122 Translation initiation 99.3 1.4E-11 3.1E-16 108.6 7.9 75 7-91 191-269 (270)
73 smart00360 RRM RNA recognition 99.3 2.2E-11 4.8E-16 87.5 7.6 67 10-86 1-71 (71)
74 PLN03213 repressor of silencin 99.2 2.8E-11 6E-16 115.9 9.8 76 138-217 10-88 (759)
75 KOG4207 Predicted splicing fac 99.2 7.6E-12 1.6E-16 107.8 4.6 74 7-90 15-92 (256)
76 PLN03121 nucleic acid binding 99.2 2.6E-11 5.7E-16 108.1 7.9 75 4-89 4-79 (243)
77 smart00362 RRM_2 RNA recogniti 99.2 8.4E-11 1.8E-15 84.8 8.6 67 141-211 2-71 (72)
78 KOG4207 Predicted splicing fac 99.2 2.3E-11 5E-16 104.8 5.6 74 141-218 16-94 (256)
79 KOG0125 Ataxin 2-binding prote 99.2 7E-11 1.5E-15 108.2 9.0 75 139-217 97-174 (376)
80 KOG0111 Cyclophilin-type pepti 99.2 1.6E-11 3.4E-16 106.7 4.2 79 136-220 10-93 (298)
81 KOG0132 RNA polymerase II C-te 99.2 1.1E-09 2.3E-14 110.2 17.4 76 136-218 421-496 (894)
82 PLN03121 nucleic acid binding 99.2 2.1E-10 4.6E-15 102.3 11.3 70 141-215 8-79 (243)
83 KOG0121 Nuclear cap-binding pr 99.2 3.7E-11 8.1E-16 96.1 5.4 73 7-89 38-114 (153)
84 smart00360 RRM RNA recognition 99.1 1.6E-10 3.5E-15 82.9 7.8 66 143-212 1-71 (71)
85 cd00590 RRM RRM (RNA recogniti 99.1 2.1E-10 4.4E-15 83.2 8.1 71 7-87 1-74 (74)
86 KOG4206 Spliceosomal protein s 99.1 1.7E-10 3.7E-15 101.1 8.2 82 135-222 8-95 (221)
87 cd00590 RRM RRM (RNA recogniti 99.1 4.9E-10 1.1E-14 81.2 9.3 69 141-213 2-74 (74)
88 KOG0117 Heterogeneous nuclear 99.1 1.3E-10 2.8E-15 110.3 6.0 73 6-92 260-332 (506)
89 KOG0113 U1 small nuclear ribon 99.1 2.8E-10 6E-15 103.2 7.6 76 5-90 101-180 (335)
90 KOG0105 Alternative splicing f 99.1 6.4E-10 1.4E-14 94.4 8.8 72 141-216 9-82 (241)
91 KOG0131 Splicing factor 3b, su 99.0 2.9E-10 6.2E-15 96.4 5.6 71 141-215 12-87 (203)
92 KOG4660 Protein Mei2, essentia 99.0 1E-10 2.3E-15 113.8 3.0 175 5-218 75-251 (549)
93 KOG0108 mRNA cleavage and poly 99.0 5E-10 1.1E-14 109.1 7.4 76 6-91 19-98 (435)
94 KOG0126 Predicted RNA-binding 99.0 2.6E-11 5.6E-16 102.6 -1.3 70 8-87 38-111 (219)
95 smart00361 RRM_1 RNA recogniti 99.0 7.3E-10 1.6E-14 81.5 6.6 58 20-86 2-70 (70)
96 KOG0109 RNA-binding protein LA 99.0 3.6E-10 7.8E-15 102.1 5.8 70 141-217 5-74 (346)
97 KOG0111 Cyclophilin-type pepti 99.0 1.3E-10 2.7E-15 101.1 2.7 82 4-95 9-94 (298)
98 KOG0126 Predicted RNA-binding 99.0 4.5E-11 9.8E-16 101.1 -0.3 70 140-213 37-111 (219)
99 KOG0130 RNA-binding protein RB 99.0 7.2E-10 1.6E-14 89.5 6.3 74 136-215 72-150 (170)
100 KOG4454 RNA binding protein (R 99.0 1.5E-10 3.3E-15 100.6 1.5 139 4-204 8-153 (267)
101 KOG0112 Large RNA-binding prot 99.0 5.1E-10 1.1E-14 114.0 5.4 159 3-217 370-531 (975)
102 KOG0149 Predicted RNA-binding 98.9 1.7E-09 3.7E-14 95.2 6.6 76 136-216 10-90 (247)
103 COG0724 RNA-binding proteins ( 98.9 3.8E-09 8.3E-14 95.7 9.1 74 137-216 116-194 (306)
104 KOG0130 RNA-binding protein RB 98.9 1.3E-09 2.8E-14 88.1 5.0 72 8-89 75-150 (170)
105 smart00361 RRM_1 RNA recogniti 98.9 3.6E-09 7.8E-14 77.8 6.6 56 152-211 2-69 (70)
106 KOG0113 U1 small nuclear ribon 98.9 6E-09 1.3E-13 94.6 8.9 79 135-219 100-183 (335)
107 KOG0108 mRNA cleavage and poly 98.9 4.1E-09 8.9E-14 102.8 8.0 74 141-218 21-99 (435)
108 KOG0415 Predicted peptidyl pro 98.9 4.2E-09 9E-14 97.5 7.0 83 130-217 233-319 (479)
109 KOG4212 RNA-binding protein hn 98.8 6E-09 1.3E-13 98.8 5.5 71 4-87 536-607 (608)
110 KOG0153 Predicted RNA-binding 98.7 7.6E-08 1.6E-12 89.2 8.3 73 139-216 229-302 (377)
111 KOG0153 Predicted RNA-binding 98.6 5.6E-08 1.2E-12 90.1 6.2 74 6-90 229-302 (377)
112 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.4E-07 3E-12 92.2 6.7 78 4-91 404-485 (940)
113 KOG0146 RNA-binding protein ET 98.5 7.3E-08 1.6E-12 86.3 4.3 76 7-92 287-366 (371)
114 KOG0120 Splicing factor U2AF, 98.5 5.1E-07 1.1E-11 89.0 10.2 181 4-221 174-373 (500)
115 KOG4660 Protein Mei2, essentia 98.5 6.9E-08 1.5E-12 94.4 3.7 70 135-210 74-143 (549)
116 KOG4454 RNA binding protein (R 98.5 5.5E-08 1.2E-12 84.9 2.4 75 136-215 9-85 (267)
117 KOG1365 RNA-binding protein Fu 98.5 2.5E-07 5.5E-12 86.7 6.9 183 9-220 165-365 (508)
118 KOG4210 Nuclear localization s 98.5 1.7E-07 3.7E-12 87.3 5.7 168 6-218 89-265 (285)
119 KOG1457 RNA binding protein (c 98.4 2.9E-06 6.3E-11 74.4 10.6 83 136-220 34-121 (284)
120 PF11608 Limkain-b1: Limkain b 98.4 1.1E-06 2.3E-11 65.8 6.5 70 7-91 4-77 (90)
121 KOG0116 RasGAP SH3 binding pro 98.3 2.8E-06 6E-11 82.7 10.3 71 141-215 291-365 (419)
122 KOG0128 RNA-binding protein SA 98.3 1.2E-07 2.6E-12 96.7 0.8 138 7-216 669-814 (881)
123 KOG4208 Nucleolar RNA-binding 98.3 1.1E-06 2.4E-11 76.3 6.5 74 8-91 52-130 (214)
124 PF11608 Limkain-b1: Limkain b 98.3 2.8E-06 6.1E-11 63.5 7.7 68 141-217 5-77 (90)
125 KOG2193 IGF-II mRNA-binding pr 98.3 1.5E-07 3.2E-12 89.2 0.9 153 7-217 3-157 (584)
126 KOG0116 RasGAP SH3 binding pro 98.3 7.1E-07 1.5E-11 86.8 5.6 74 5-89 288-365 (419)
127 KOG0129 Predicted RNA-binding 98.3 8.2E-06 1.8E-10 79.5 12.2 156 5-195 259-432 (520)
128 KOG0415 Predicted peptidyl pro 98.3 8.4E-07 1.8E-11 82.5 5.0 74 6-89 240-317 (479)
129 KOG4208 Nucleolar RNA-binding 98.3 2.5E-06 5.3E-11 74.1 7.0 73 141-217 52-130 (214)
130 KOG0151 Predicted splicing reg 98.3 4.2E-06 9.1E-11 84.0 9.5 82 133-219 171-259 (877)
131 KOG4661 Hsp27-ERE-TATA-binding 98.3 2.7E-06 5.8E-11 83.4 7.9 78 135-217 404-485 (940)
132 KOG4211 Splicing factor hnRNP- 98.3 6.9E-05 1.5E-09 72.8 17.4 183 8-204 106-348 (510)
133 KOG0533 RRM motif-containing p 98.2 6.4E-06 1.4E-10 74.5 8.5 77 139-219 84-164 (243)
134 KOG0106 Alternative splicing f 98.1 2.1E-06 4.6E-11 76.1 4.0 70 141-217 4-73 (216)
135 KOG0533 RRM motif-containing p 98.1 8.2E-06 1.8E-10 73.8 7.5 73 7-89 85-160 (243)
136 KOG0226 RNA-binding proteins [ 98.0 6.5E-06 1.4E-10 73.6 5.4 143 24-214 117-267 (290)
137 KOG4849 mRNA cleavage factor I 98.0 0.00029 6.2E-09 65.8 15.6 80 134-216 76-162 (498)
138 KOG1548 Transcription elongati 97.9 2.5E-05 5.5E-10 72.7 7.4 74 138-215 134-219 (382)
139 PF08777 RRM_3: RNA binding mo 97.9 3.7E-05 8.1E-10 61.0 6.3 57 141-199 4-60 (105)
140 KOG0151 Predicted splicing reg 97.8 1.9E-05 4E-10 79.5 5.1 75 7-91 176-257 (877)
141 KOG4209 Splicing factor RNPS1, 97.8 3.6E-05 7.7E-10 69.7 6.3 72 141-217 104-180 (231)
142 KOG1365 RNA-binding protein Fu 97.8 0.00042 9.1E-09 65.5 13.0 150 9-195 64-225 (508)
143 PF04059 RRM_2: RNA recognitio 97.8 0.00012 2.7E-09 57.0 8.1 78 7-90 3-86 (97)
144 KOG4209 Splicing factor RNPS1, 97.7 3.5E-05 7.7E-10 69.7 4.8 76 5-91 101-180 (231)
145 KOG4205 RNA-binding protein mu 97.7 4E-05 8.7E-10 72.0 5.2 72 136-214 6-82 (311)
146 KOG0226 RNA-binding proteins [ 97.7 2.7E-05 5.8E-10 69.7 3.3 75 5-89 190-268 (290)
147 COG5175 MOT2 Transcriptional r 97.7 9.1E-05 2E-09 68.8 6.3 75 140-217 116-203 (480)
148 KOG4307 RNA binding protein RB 97.7 7.5E-05 1.6E-09 75.1 6.0 73 4-86 866-942 (944)
149 KOG0115 RNA-binding protein p5 97.5 0.00023 5E-09 63.9 6.8 92 54-202 4-98 (275)
150 PF08777 RRM_3: RNA binding mo 97.5 0.00014 2.9E-09 57.8 4.3 57 8-67 4-60 (105)
151 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00022 4.8E-09 49.3 4.5 50 141-193 4-53 (53)
152 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00045 9.8E-09 54.2 6.0 70 141-216 9-91 (100)
153 KOG1855 Predicted RNA-binding 97.4 0.00015 3.2E-09 69.4 3.8 68 135-204 230-314 (484)
154 COG5175 MOT2 Transcriptional r 97.3 0.00046 1E-08 64.2 5.9 73 9-90 118-202 (480)
155 KOG1996 mRNA splicing factor [ 97.3 0.00057 1.2E-08 62.5 6.0 75 8-91 284-367 (378)
156 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00038 8.3E-09 48.1 3.4 50 8-61 4-53 (53)
157 KOG1996 mRNA splicing factor [ 97.2 0.00075 1.6E-08 61.7 6.0 64 152-218 300-368 (378)
158 KOG1855 Predicted RNA-binding 97.1 0.00026 5.7E-09 67.7 2.6 66 4-70 230-312 (484)
159 KOG4849 mRNA cleavage factor I 97.1 0.04 8.6E-07 51.8 16.4 61 8-69 83-149 (498)
160 KOG3152 TBP-binding protein, a 97.1 0.00033 7.1E-09 62.9 2.4 64 141-204 77-156 (278)
161 PF04059 RRM_2: RNA recognitio 97.0 0.0054 1.2E-07 47.8 8.8 74 143-217 6-87 (97)
162 KOG4676 Splicing factor, argin 97.0 0.00041 8.9E-09 65.7 2.9 182 6-202 8-214 (479)
163 PF08952 DUF1866: Domain of un 97.0 0.003 6.6E-08 52.6 7.5 76 134-217 25-107 (146)
164 KOG2314 Translation initiation 97.0 0.0011 2.4E-08 65.6 5.5 58 22-87 80-140 (698)
165 KOG3152 TBP-binding protein, a 96.9 0.00048 1E-08 61.9 2.4 62 7-69 76-153 (278)
166 KOG0128 RNA-binding protein SA 96.9 4.7E-05 1E-09 78.2 -4.5 151 6-200 572-733 (881)
167 KOG4307 RNA binding protein RB 96.9 0.002 4.3E-08 65.2 6.7 70 137-212 868-942 (944)
168 KOG2202 U2 snRNP splicing fact 96.9 0.00051 1.1E-08 61.8 2.3 61 21-91 83-148 (260)
169 KOG1995 Conserved Zn-finger pr 96.8 0.0012 2.6E-08 62.1 3.8 79 136-218 64-155 (351)
170 KOG2416 Acinus (induces apopto 96.7 0.0023 4.9E-08 63.8 5.0 87 134-224 442-529 (718)
171 KOG1924 RhoA GTPase effector D 96.5 0.017 3.7E-07 59.5 10.3 9 330-338 593-601 (1102)
172 KOG2202 U2 snRNP splicing fact 96.4 0.0022 4.8E-08 57.8 2.5 62 153-218 83-149 (260)
173 KOG2314 Translation initiation 96.3 0.0062 1.3E-07 60.4 5.6 71 136-212 58-139 (698)
174 PF08952 DUF1866: Domain of un 96.3 0.01 2.2E-07 49.5 6.1 56 22-91 52-107 (146)
175 PF15023 DUF4523: Protein of u 96.3 0.018 3.9E-07 47.6 7.2 64 144-214 96-159 (166)
176 PF15023 DUF4523: Protein of u 96.2 0.019 4.1E-07 47.5 6.8 70 7-89 88-160 (166)
177 PF04847 Calcipressin: Calcipr 96.0 0.019 4.2E-07 50.1 6.6 65 150-219 7-73 (184)
178 KOG4285 Mitotic phosphoprotein 96.0 0.018 3.8E-07 53.2 6.5 62 139-204 198-259 (350)
179 KOG4574 RNA-binding protein (c 96.0 0.0049 1.1E-07 63.7 3.0 71 10-90 303-373 (1007)
180 KOG4210 Nuclear localization s 95.9 0.0039 8.4E-08 58.3 1.9 75 6-91 186-264 (285)
181 KOG4574 RNA-binding protein (c 95.7 0.0072 1.6E-07 62.6 2.9 74 143-219 303-376 (1007)
182 KOG4676 Splicing factor, argin 95.5 0.023 5E-07 54.2 5.3 62 138-201 9-77 (479)
183 PF04847 Calcipressin: Calcipr 95.4 0.024 5.2E-07 49.5 4.9 62 20-92 9-72 (184)
184 KOG1995 Conserved Zn-finger pr 95.4 0.014 3.1E-07 55.0 3.6 75 7-91 68-154 (351)
185 PF08675 RNA_bind: RNA binding 95.2 0.076 1.6E-06 40.0 6.1 56 136-198 9-64 (87)
186 PF10309 DUF2414: Protein of u 95.0 0.11 2.3E-06 37.0 6.1 52 141-196 8-62 (62)
187 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.079 1.7E-06 41.6 5.9 61 20-89 19-90 (100)
188 PF08675 RNA_bind: RNA binding 94.9 0.043 9.3E-07 41.3 4.1 49 13-66 16-64 (87)
189 KOG2068 MOT2 transcription fac 94.4 0.02 4.4E-07 53.7 1.6 74 9-91 81-163 (327)
190 KOG2068 MOT2 transcription fac 94.3 0.017 3.7E-07 54.1 0.9 74 141-217 80-163 (327)
191 KOG2416 Acinus (induces apopto 94.3 0.027 5.9E-07 56.4 2.3 79 7-94 446-525 (718)
192 KOG2135 Proteins containing th 94.0 0.04 8.7E-07 53.8 2.9 62 151-218 386-447 (526)
193 KOG0115 RNA-binding protein p5 93.8 0.043 9.3E-07 49.6 2.5 63 6-69 32-97 (275)
194 PF07576 BRAP2: BRCA1-associat 93.5 0.49 1.1E-05 37.8 7.9 57 14-70 21-80 (110)
195 KOG0112 Large RNA-binding prot 93.4 0.02 4.2E-07 59.9 -0.3 76 135-215 371-449 (975)
196 KOG2193 IGF-II mRNA-binding pr 93.2 0.089 1.9E-06 50.8 3.6 73 141-218 4-77 (584)
197 PF11767 SET_assoc: Histone ly 92.9 0.34 7.3E-06 35.0 5.5 55 149-211 11-65 (66)
198 KOG4285 Mitotic phosphoprotein 92.2 0.36 7.8E-06 44.8 6.0 46 21-69 211-256 (350)
199 PF07576 BRAP2: BRCA1-associat 91.8 1.3 2.8E-05 35.4 8.1 61 143-203 18-81 (110)
200 KOG2135 Proteins containing th 91.3 0.14 3E-06 50.2 2.5 74 6-91 373-446 (526)
201 PF11767 SET_assoc: Histone ly 91.1 1.1 2.5E-05 32.2 6.5 57 9-70 3-59 (66)
202 KOG2591 c-Mpl binding protein, 90.8 1.1 2.4E-05 45.0 8.1 64 131-197 168-233 (684)
203 KOG2318 Uncharacterized conser 90.7 0.75 1.6E-05 46.3 7.0 77 4-87 173-304 (650)
204 PF10309 DUF2414: Protein of u 89.5 1.1 2.5E-05 31.8 5.3 52 8-64 8-62 (62)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 89.5 0.63 1.4E-05 40.4 4.8 80 140-219 9-100 (176)
206 KOG2893 Zn finger protein [Gen 89.3 7 0.00015 35.3 11.2 11 297-307 169-179 (341)
207 PF03880 DbpA: DbpA RNA bindin 88.9 2.4 5.2E-05 31.0 6.9 67 139-214 3-74 (74)
208 KOG2318 Uncharacterized conser 88.4 2.3 5E-05 43.0 8.4 77 135-214 173-305 (650)
209 KOG0129 Predicted RNA-binding 87.9 0.88 1.9E-05 45.2 5.1 58 4-62 369-431 (520)
210 PF10567 Nab6_mRNP_bdg: RNA-re 86.8 15 0.00033 34.2 12.1 183 3-215 13-227 (309)
211 PF07292 NID: Nmi/IFP 35 domai 84.3 1.7 3.6E-05 33.3 4.0 21 136-158 52-72 (88)
212 KOG0804 Cytoplasmic Zn-finger 82.9 2.2 4.8E-05 41.8 5.1 65 5-70 74-141 (493)
213 KOG0804 Cytoplasmic Zn-finger 82.3 3.8 8.3E-05 40.2 6.5 66 136-203 74-142 (493)
214 PF10567 Nab6_mRNP_bdg: RNA-re 81.3 5 0.00011 37.3 6.6 76 136-216 15-107 (309)
215 KOG2591 c-Mpl binding protein, 79.0 2.4 5.1E-05 42.7 3.9 54 9-66 179-234 (684)
216 PF14111 DUF4283: Domain of un 77.0 1.8 3.9E-05 36.0 2.3 37 138-174 104-141 (153)
217 COG5638 Uncharacterized conser 76.8 5.5 0.00012 38.7 5.6 37 177-214 259-295 (622)
218 PF03467 Smg4_UPF3: Smg-4/UPF3 76.3 1 2.2E-05 39.1 0.6 62 7-69 9-80 (176)
219 KOG2236 Uncharacterized conser 76.0 32 0.0007 34.1 10.6 15 153-167 245-259 (483)
220 PF03880 DbpA: DbpA RNA bindin 74.9 6.7 0.00015 28.6 4.6 54 21-88 16-74 (74)
221 KOG2891 Surface glycoprotein [ 72.2 0.93 2E-05 41.7 -0.7 67 150-216 173-267 (445)
222 KOG2253 U1 snRNP complex, subu 67.0 3.8 8.2E-05 42.1 2.2 59 141-204 43-101 (668)
223 KOG2891 Surface glycoprotein [ 65.6 2.1 4.5E-05 39.4 0.1 52 18-69 173-247 (445)
224 KOG1902 Putative signal transd 62.0 1.5E+02 0.0033 28.4 12.0 37 18-54 99-135 (441)
225 KOG2893 Zn finger protein [Gen 58.7 1.1E+02 0.0024 27.7 9.6 6 291-296 172-177 (341)
226 PRK14548 50S ribosomal protein 57.9 44 0.00096 25.2 6.1 52 145-196 27-81 (84)
227 TIGR02542 B_forsyth_147 Bacter 56.4 38 0.00083 27.2 5.7 20 21-40 16-35 (145)
228 KOG2253 U1 snRNP complex, subu 55.6 5.1 0.00011 41.2 0.8 57 7-69 42-98 (668)
229 PF08156 NOP5NT: NOP5NT (NUC12 55.5 5 0.00011 29.0 0.6 39 21-65 27-65 (67)
230 TIGR03636 L23_arch archaeal ri 52.7 63 0.0014 24.0 6.1 52 144-195 19-73 (77)
231 KOG4019 Calcineurin-mediated s 51.2 49 0.0011 28.8 5.9 58 23-91 32-90 (193)
232 PF02714 DUF221: Domain of unk 50.8 17 0.00036 34.3 3.5 32 47-89 1-32 (325)
233 KOG4483 Uncharacterized conser 48.6 23 0.00051 34.4 4.0 52 7-62 393-445 (528)
234 PF08544 GHMP_kinases_C: GHMP 43.4 93 0.002 22.4 6.0 44 21-65 37-80 (85)
235 PF08156 NOP5NT: NOP5NT (NUC12 42.7 9.3 0.0002 27.5 0.3 39 153-197 27-65 (67)
236 PF08734 GYD: GYD domain; Int 42.4 1E+02 0.0022 23.4 6.1 47 20-66 22-69 (91)
237 PF08544 GHMP_kinases_C: GHMP 42.2 91 0.002 22.5 5.8 45 152-197 36-80 (85)
238 KOG4019 Calcineurin-mediated s 39.2 25 0.00055 30.5 2.4 57 155-215 32-88 (193)
239 KOG4410 5-formyltetrahydrofola 38.4 46 0.00099 31.0 4.1 48 141-189 333-380 (396)
240 PF08734 GYD: GYD domain; Int 35.1 1.8E+02 0.0038 22.1 6.4 47 152-198 22-69 (91)
241 PF15513 DUF4651: Domain of un 32.9 68 0.0015 22.8 3.4 20 21-40 9-28 (62)
242 KOG4672 Uncharacterized conser 32.4 5.1E+02 0.011 25.7 10.8 22 47-68 42-63 (487)
243 PF02714 DUF221: Domain of unk 30.7 50 0.0011 31.0 3.3 35 179-218 1-35 (325)
244 KOG4483 Uncharacterized conser 30.1 92 0.002 30.5 4.8 55 136-195 391-446 (528)
245 PTZ00191 60S ribosomal protein 29.4 1.8E+02 0.0039 24.4 5.9 47 146-192 89-138 (145)
246 PRK07400 30S ribosomal protein 29.0 2.7E+02 0.0059 26.4 8.0 35 20-55 15-55 (318)
247 KOG4672 Uncharacterized conser 28.9 2.6E+02 0.0057 27.5 7.6 10 22-31 51-60 (487)
248 PF14111 DUF4283: Domain of un 28.5 40 0.00087 27.7 2.0 32 9-40 108-139 (153)
249 KOG4410 5-formyltetrahydrofola 27.1 64 0.0014 30.1 3.1 48 8-57 333-380 (396)
250 PRK11901 hypothetical protein; 26.9 1E+02 0.0023 29.3 4.6 48 18-66 254-306 (327)
251 KOG4365 Uncharacterized conser 26.8 12 0.00026 36.8 -1.7 73 143-219 8-84 (572)
252 KOG4264 Nucleo-cytoplasmic pro 26.8 3.4E+02 0.0073 27.7 8.1 9 178-186 443-451 (694)
253 KOG4213 RNA-binding protein La 26.5 74 0.0016 27.7 3.2 35 31-65 132-171 (205)
254 cd04908 ACT_Bt0572_1 N-termina 24.2 2.5E+02 0.0053 19.3 8.1 50 149-200 12-63 (66)
255 KOG1205 Predicted dehydrogenas 24.2 95 0.0021 29.1 3.8 50 12-62 67-120 (282)
256 COG0030 KsgA Dimethyladenosine 23.9 72 0.0016 29.5 2.9 42 8-62 98-139 (259)
257 PF11411 DNA_ligase_IV: DNA li 23.9 55 0.0012 20.6 1.4 16 17-32 20-35 (36)
258 COG5180 PBP1 Protein interacti 23.8 2.2E+02 0.0047 28.6 6.2 15 300-314 583-597 (654)
259 TIGR02167 Liste_lipo_26 bacter 23.7 50 0.0011 19.0 1.2 18 1-18 1-19 (26)
260 CHL00123 rps6 ribosomal protei 23.7 2.2E+02 0.0048 21.8 5.2 48 148-195 16-81 (97)
261 PF11426 Tn7_TnsC_Int: Tn7 tra 23.4 32 0.0007 23.1 0.4 20 14-33 5-24 (48)
262 PF03468 XS: XS domain; Inter 22.6 87 0.0019 25.1 2.8 49 150-199 29-79 (116)
263 cd04904 ACT_AAAH ACT domain of 22.4 2.7E+02 0.0059 19.9 5.3 51 16-66 10-65 (74)
264 KOG2187 tRNA uracil-5-methyltr 22.1 64 0.0014 32.7 2.3 57 11-68 31-87 (534)
265 PRK11901 hypothetical protein; 21.8 1.7E+02 0.0037 27.9 5.0 48 150-198 254-306 (327)
266 cd04889 ACT_PDH-BS-like C-term 21.4 2.5E+02 0.0054 18.4 5.9 44 150-193 10-55 (56)
267 PF03108 DBD_Tnp_Mut: MuDR fam 20.7 1.3E+02 0.0027 21.1 3.1 36 50-96 9-44 (67)
268 KOG2236 Uncharacterized conser 20.6 8.8E+02 0.019 24.4 9.7 7 180-186 318-324 (483)
No 1
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=279.10 Aligned_cols=228 Identities=36% Similarity=0.531 Sum_probs=186.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.-|.+++||||||++| +||.+|+.+||+|+++++++++ .+||+||.|+++|...+.+... +++++++.+|
T Consensus 27 pSkV~HlRnlp~e~tE-~elI~Lg~pFG~vtn~~~lkGk--nQAflem~d~~sAvtmv~~y~~-------~~p~lr~~~~ 96 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTE-EELISLGLPFGKVTNLLMLKGK--NQAFLEMADEESAVTMVNYYTS-------VTPVLRGQPI 96 (492)
T ss_pred CcceeEeccCCccccH-HHHHHhcccccceeeeeeeccc--hhhhhhhcchhhhhheeecccc-------cCccccCcce
Confidence 3478999999999999 6899999999999999999854 4799999999999998876654 4577999999
Q ss_pred EEEeccCCcccccccCccCcC---CCCCCCCCCCCccCccCCC-cc-cCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019429 84 RITYSAHTDLSVKFQSHRSRD---YTNPYLPVAPSAIDASGQL-SV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 158 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 158 (341)
.|+||.++.++.+......|. |... +.......+ +. .........++.+|.+.|+|+-+.||.|.|+++
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~------s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAV------SSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhh------hcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 999999988876533221221 1000 000000000 00 011113345689999999999999999999999
Q ss_pred HcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCccccCCCCCCCCCCCCCCC
Q 019429 159 FSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 238 (341)
Q Consensus 159 F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~~~~~~~~~d~~~~~~~~ 238 (341)
|++||.|.||..|.|+.||+|+|+|.|.+.|..|..+|+|+.|+++ ||+|+|+||+..++.++.+++++||||+|.+|.
T Consensus 171 FS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred HhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 019429 239 VNSQPSILGQ 248 (341)
Q Consensus 239 ~~~~~~~~~~ 248 (341)
+..++++...
T Consensus 250 gd~~p~l~~~ 259 (492)
T KOG1190|consen 250 GDGQPSLDQL 259 (492)
T ss_pred Cccccccchh
Confidence 9888876544
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.7e-34 Score=288.06 Aligned_cols=191 Identities=33% Similarity=0.489 Sum_probs=163.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHh--cCCCcCCcCCCCCCCCce
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL--DGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~l--ng~~i~~~~~~~~~~g~~ 82 (341)
-|.|+|+|||+++++ ++|+++|++||+|.+|++++ ++++|||+|.+.|+|++||+.| ++.. +.|++
T Consensus 2 s~vv~V~nLp~~~te-~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~---------l~g~~ 69 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE-ADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIY---------IRGQP 69 (481)
T ss_pred ccEEEEcCCCCCCCH-HHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCce---------EcCeE
Confidence 378999999999888 78999999999999998886 3468999999999999999986 4444 57999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|+||+.+++....+. ++ .....+.++.|+|+||++++|+++|+++|+.|
T Consensus 70 l~v~~s~~~~~~~~~~~----~~-------------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~ 120 (481)
T TIGR01649 70 AFFNYSTSQEIKRDGNS----DF-------------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPY 120 (481)
T ss_pred EEEEecCCcccccCCCC----cc-------------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc
Confidence 99999987654322100 00 00123678889999999999999999999999
Q ss_pred CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 019429 163 GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 237 (341)
Q Consensus 163 G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~~~~~~~~~d~~~~~~~ 237 (341)
|+|++|+|++++...+|||+|.+.++|.+|++.|||..|+++ ||.|+|.||+...+.++++++++||||++.++
T Consensus 121 G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 121 GKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred CCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 999999998776423599999999999999999999999987 78999999999999999999999999999886
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=255.42 Aligned_cols=200 Identities=18% Similarity=0.241 Sum_probs=157.8
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
-.+||.-||.|..+ ++|.-||++.|+|.++++|. +.+++||||+|+++|+|++||+.||+.+|. .||
T Consensus 84 ~EVfvGkIPrD~~E-deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--------~GK 154 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFE-DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--------PGK 154 (506)
T ss_pred ceEEecCCCccccc-hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc--------CCC
Confidence 36899999999999 89999999999999998887 456779999999999999999999999984 799
Q ss_pred eEEEEeccCC-cccccccCccCcC--------------------CCCCCC------------CCC-----------CCcc
Q 019429 82 TLRITYSAHT-DLSVKFQSHRSRD--------------------YTNPYL------------PVA-----------PSAI 117 (341)
Q Consensus 82 ~i~v~~s~~~-~l~~~~~~~~~~~--------------------~~~~~~------------~~~-----------~~~~ 117 (341)
.|.|..|..+ +|++. +.+|++. |..|.. -.. ++.+
T Consensus 155 ~igvc~Svan~RLFiG-~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~ 233 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIG-NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKI 233 (506)
T ss_pred EeEEEEeeecceeEec-cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCce
Confidence 9999988743 56654 2222221 001100 000 0000
Q ss_pred Cc-cCCCcccCCCCCC----CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHH
Q 019429 118 DA-SGQLSVGLDGKKL----EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 192 (341)
Q Consensus 118 ~~-~~~~~~~~~~~~~----~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A 192 (341)
.- .+.++++|+.... +.-++|+.|||.||..++|+|.|+++|++||.|++|+.+++ +|||+|.++++|.+|
T Consensus 234 klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKA 309 (506)
T ss_pred eecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHH
Confidence 10 1356778875433 34578888999999999999999999999999999988743 699999999999999
Q ss_pred HHHhcCceeCCCCcceEEEEeecCCCCccc
Q 019429 193 KEALEGHCIYDGGFCKLHISYSRHTDLSIK 222 (341)
Q Consensus 193 i~~l~g~~i~~~~~~~l~v~~s~~~~~~~~ 222 (341)
++.|||++|.|. .|.|++||+.+.+.+
T Consensus 310 m~~~ngkeldG~---~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 310 MKETNGKELDGS---PIEVTLAKPVDKKKK 336 (506)
T ss_pred HHHhcCceecCc---eEEEEecCChhhhcc
Confidence 999999999999 999999999876543
No 4
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=8e-33 Score=256.34 Aligned_cols=215 Identities=42% Similarity=0.608 Sum_probs=180.8
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEe
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 87 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~ 87 (341)
+.|.|+-+.++- |.|+.+|++||.|.+|+.+.|..+|||+|+|.|.+.|+.|...|+|+.|| .++|+|||+|
T Consensus 153 ~iie~m~ypVsl-DVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy-------ngcCtLrId~ 224 (492)
T KOG1190|consen 153 TIIENMFYPVSL-DVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIY-------NGCCTLRIDF 224 (492)
T ss_pred EEeccceeeeEH-HHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCccc-------CceeEEEeeh
Confidence 467888888888 89999999999999999999999999999999999999999999999999 6899999999
Q ss_pred ccCCcccccccCccCcCCCCCCCCCCC-----------------------CccCccCCCcccCCCCCCCCC-CcEEEEEe
Q 019429 88 SAHTDLSVKFQSHRSRDYTNPYLPVAP-----------------------SAIDASGQLSVGLDGKKLEPE-SNVLLASI 143 (341)
Q Consensus 88 s~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-s~vl~v~v 143 (341)
|+...|.++++++|+|||++|+++... .+++...+.+...++....+. +.+|+ |
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll--v 302 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL--V 302 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE--E
Confidence 999999999999999999999998762 111111112222223222222 46666 4
Q ss_pred ecC-CCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCccc
Q 019429 144 ENM-QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIK 222 (341)
Q Consensus 144 ~nl-~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~~ 222 (341)
.|| .+.||.|.|+.+|+.||+|.+|+|+.+++ ..|+|+|.|...|..|++.|+|++|+|+ +|+|+|||++.++++
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKHTNVQLP 378 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccCccccCC
Confidence 444 57999999999999999999999987664 4799999999999999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCCCC
Q 019429 223 VNNDRSRDYTLPST 236 (341)
Q Consensus 223 ~~~~~~~d~~~~~~ 236 (341)
..+++.+++|.+..
T Consensus 379 ~egq~d~glT~dy~ 392 (492)
T KOG1190|consen 379 REGQEDQGLTKDYG 392 (492)
T ss_pred CCCCccccccccCC
Confidence 98888777776554
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.98 E-value=4.7e-31 Score=263.35 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=162.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
.|+|.||++.+++ ++|+++|+.||+|.+|+++++...++|||+|.+.|+|.+|++.|||..|+ .++++|+|+
T Consensus 98 ~v~v~nl~~~vt~-~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~-------~~~~~l~v~ 169 (481)
T TIGR01649 98 RVIVENPMYPITL-DVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY-------NGCCTLKIE 169 (481)
T ss_pred EEEEcCCCCCCCH-HHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc-------CCceEEEEE
Confidence 5799999998877 89999999999999999988665568999999999999999999999986 356899999
Q ss_pred eccCCcccccccCccCcCCCCCCCCCC-CCc--------cC-------------ccCCC-----------ccc-------
Q 019429 87 YSAHTDLSVKFQSHRSRDYTNPYLPVA-PSA--------ID-------------ASGQL-----------SVG------- 126 (341)
Q Consensus 87 ~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--------~~-------------~~~~~-----------~~~------- 126 (341)
||+...|.++.+..++|||+++.++.. ... .. +.+.. ..+
T Consensus 170 ~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR01649 170 YAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPS 249 (481)
T ss_pred EecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCC
Confidence 999999999989999999999877410 000 00 00000 000
Q ss_pred ----------------CCCCCCCCCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHH
Q 019429 127 ----------------LDGKKLEPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 189 (341)
Q Consensus 127 ----------------~~~~~~~~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A 189 (341)
..+....+++++|+ |.||+. .+|+|+|+++|+.||.|++|+++..++|+ |||+|.+.++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~-afV~f~~~~~A 326 (481)
T TIGR01649 250 RYRPAYEAAPLAPAISSYGPAGGGPGSVLM--VSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKET-ALIEMADPYQA 326 (481)
T ss_pred CCcccccccccCccccccCCCCCCCCCEEE--EeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCE-EEEEECCHHHH
Confidence 00011124567777 999997 69999999999999999999998777786 99999999999
Q ss_pred HHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 190 VVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 190 ~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
..|++.|||..|.|+ .|+|++++....
T Consensus 327 ~~Ai~~lng~~l~g~---~l~v~~s~~~~~ 353 (481)
T TIGR01649 327 QLALTHLNGVKLFGK---PLRVCPSKQQNV 353 (481)
T ss_pred HHHHHHhCCCEECCc---eEEEEEcccccc
Confidence 999999999999999 999999987654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=1.1e-30 Score=249.00 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=136.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|||+|||+++++ ++|+++|+.||+|++|+|++ +.+++||||+|.|+|+|++||+.|||..| .
T Consensus 106 ~~~~LfVgnLp~~~te-~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---------~ 175 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTD-RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---------R 175 (346)
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---------C
Confidence 3578999999999998 78999999999999998876 23456899999999999999999999884 6
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
+++|+|++++.....+ .+..|+ |.||+..+|+|+|+++|
T Consensus 176 gr~i~V~~a~p~~~~~---------------------------------------~~~~lf--V~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 176 NKRLKVSYARPGGESI---------------------------------------KDTNLY--VTNLPRTITDDQLDTIF 214 (346)
T ss_pred Cceeeeeccccccccc---------------------------------------ccceeE--EeCCCCcccHHHHHHHH
Confidence 9999999886431110 123344 99999999999999999
Q ss_pred cccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 160 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
++||+|++|+|+.++ +|+ |||+|++.++|++||+.||+..|.+. ..+|+|.|++...
T Consensus 215 ~~fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~~~~ 276 (346)
T TIGR01659 215 GKYGQIVQKNILRDKLTGTPRGV-AFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAEEHG 276 (346)
T ss_pred HhcCCEEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCccc
Confidence 999999999987543 365 99999999999999999999998774 3489999987643
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=230.03 Aligned_cols=176 Identities=19% Similarity=0.324 Sum_probs=145.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
|=.+|+..|..++++ |+||+.|.+||+|.+.+++| .++++|+||.|-++++|++||+.|||+. +++
T Consensus 62 hfhvfvgdls~eI~~-e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW---------lG~ 131 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDN-EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW---------LGR 131 (321)
T ss_pred ceeEEehhcchhcch-HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee---------ecc
Confidence 667899999999999 69999999999999999888 4567799999999999999999999999 579
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
|.||-.|+.++.... +.+...|.....- ..+.++. ||++|+..-+|||+|++.|+
T Consensus 132 R~IRTNWATRKp~e~---n~~~ltfdeV~NQ--------------------ssp~Nts--VY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEM---NGKPLTFDEVYNQ--------------------SSPDNTS--VYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred ceeeccccccCcccc---CCCCccHHHHhcc--------------------CCCCCce--EEeCCcCccccHHHHHHhcc
Confidence 999999999774111 1111111100000 0112333 66999988899999999999
Q ss_pred ccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCc
Q 019429 161 AFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 220 (341)
Q Consensus 161 ~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~ 220 (341)
.||.|.+|++|+.++ +|||.|++.|+|.+||..|||++|.|. .++++|.|....-
T Consensus 187 ~fG~I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G~---~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 187 PFGPIQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWGKEGDDG 241 (321)
T ss_pred cCCcceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCce---EEEEeccccCCCC
Confidence 999999999999885 599999999999999999999999999 9999999877643
No 8
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=231.24 Aligned_cols=213 Identities=31% Similarity=0.465 Sum_probs=180.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
..+||+|-..+++ .||.+..+.||.|.-|.++..+ .+|.|||+|++.|+.++..-....|+ +.|..-.+.
T Consensus 33 vvhvr~l~~~v~e-adl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~-------i~gq~Al~N 102 (494)
T KOG1456|consen 33 VVHVRGLHQGVVE-ADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIY-------IAGQQALFN 102 (494)
T ss_pred eEEEeccccccch-hHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCccc-------ccCchhhcc
Confidence 3578898888887 8999999999999999888854 35999999999999999977777776 788888888
Q ss_pred eccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCee
Q 019429 87 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 166 (341)
Q Consensus 87 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~ 166 (341)
||..+++.... .....+++||+++|.|.-+.+|.|.|+.++-..|+|.
T Consensus 103 yStsq~i~R~g--------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl 150 (494)
T KOG1456|consen 103 YSTSQCIERPG--------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVL 150 (494)
T ss_pred cchhhhhccCC--------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceE
Confidence 88766554321 0112358999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCccccCCCCCCCCCCCCCCCC-------
Q 019429 167 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV------- 239 (341)
Q Consensus 167 ~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~------- 239 (341)
+|+||+++ |.+|.|||++.+.|++|..+|||..|+.+ ||+|+|+|||++++++.+|+..+||||.|.+++.
T Consensus 151 RIvIfkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~ 228 (494)
T KOG1456|consen 151 RIVIFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNH 228 (494)
T ss_pred EEEEEecc-ceeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCC
Confidence 99999985 78999999999999999999999999998 9999999999999999999999999999987431
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCC
Q 019429 240 ---NSQPSILGQQPVPMVGATANQYNG 263 (341)
Q Consensus 240 ---~~~~~~~~~~p~~~~g~~~~~~~~ 263 (341)
..++.+++..|..++|++++|+.|
T Consensus 229 ~~r~~~p~~~~~~pss~~G~h~~y~sg 255 (494)
T KOG1456|consen 229 YDRQRQPAPLGYHPSSRGGGHSGYYSG 255 (494)
T ss_pred CccccCCCccCCChhhcCCCCCCCccc
Confidence 235566677777777777666554
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.9e-28 Score=247.12 Aligned_cols=181 Identities=17% Similarity=0.247 Sum_probs=137.7
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+.|+|+||++++++ ++|+++|+.||+|.++.+++. ..+++|||+|.+.++|.+|++.|||+.|.. ...++.
T Consensus 179 ~~l~V~nl~~~~te-e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~-----~~~g~~ 252 (562)
T TIGR01628 179 TNLYVKNLDPSVNE-DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL-----AKEGKK 252 (562)
T ss_pred CeEEEeCCCCcCCH-HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc-----ccccee
Confidence 56999999999987 799999999999999988872 345579999999999999999999998520 001888
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|.|.+++.+..... ...+.+..-.. .......+..|+ |+||+..+|+++|+++|+.|
T Consensus 253 l~v~~a~~k~er~~---~~~~~~~~~~~------------------~~~~~~~~~~l~--V~nl~~~~~~~~L~~~F~~~ 309 (562)
T TIGR01628 253 LYVGRAQKRAEREA---ELRRKFEELQQ------------------ERKMKAQGVNLY--VKNLDDTVTDEKLRELFSEC 309 (562)
T ss_pred eEeecccChhhhHH---HHHhhHHhhhh------------------hhhcccCCCEEE--EeCCCCccCHHHHHHHHHhc
Confidence 99988764421100 00000000000 000001233444 99999999999999999999
Q ss_pred CCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 163 GPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 163 G~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
|.|++|+++.+. +|+ |||+|++.++|.+|++.|||..|.|+ +|+|.|++.++.
T Consensus 310 G~i~~~~i~~d~~g~~~g~-gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V~~a~~k~~ 366 (562)
T TIGR01628 310 GEITSAKVMLDEKGVSRGF-GFVCFSNPEEANRAVTEMHGRMLGGK---PLYVALAQRKEQ 366 (562)
T ss_pred CCeEEEEEEECCCCCcCCe-EEEEeCCHHHHHHHHHHhcCCeeCCc---eeEEEeccCcHH
Confidence 999999987543 566 99999999999999999999999999 999999987654
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.9e-27 Score=236.15 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=135.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
+++|||+||++++++ ++|+++|+.||+|.+|.+++ +++++||||+|.+.|+|++|++.|||..| .|
T Consensus 107 ~~rLfVGnLp~~~tE-e~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---------~G 176 (612)
T TIGR01645 107 MCRVYVGSISFELRE-DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---------GG 176 (612)
T ss_pred CCEEEEcCCCCCCCH-HHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---------ec
Confidence 456999999999988 79999999999999998875 34566899999999999999999999885 69
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
+.|+|.+........ ...+... ......+. |||+||+..+++++|+++|+
T Consensus 177 R~IkV~rp~~~p~a~-----~~~~~~~-----------------------~~~~~~~r--LfVgnLp~~vteedLk~lFs 226 (612)
T TIGR01645 177 RNIKVGRPSNMPQAQ-----PIIDMVQ-----------------------EEAKKFNR--IYVASVHPDLSETDIKSVFE 226 (612)
T ss_pred ceeeecccccccccc-----ccccccc-----------------------ccccccce--EEeecCCCCCCHHHHHHHHh
Confidence 999998644221000 0000000 00011234 55999999999999999999
Q ss_pred ccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 161 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 161 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
.||.|++++|.+. .+|| |||+|.+.++|.+|++.|||..|.|+ .|+|.++..+
T Consensus 227 ~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~kAI~amNg~elgGr---~LrV~kAi~p 284 (612)
T TIGR01645 227 AFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKCVTP 284 (612)
T ss_pred hcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHHHHHHHhCCCeeCCe---EEEEEecCCC
Confidence 9999999998753 3676 99999999999999999999999999 9999988654
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.2e-26 Score=220.87 Aligned_cols=199 Identities=17% Similarity=0.257 Sum_probs=138.4
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+.|+|+|||.++++ ++|+++|+.||+|..+.++.. ..+++|||+|.+.++|++|++.|||..+. ....
T Consensus 90 ~~l~v~~l~~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-------g~~~ 161 (352)
T TIGR01661 90 ANLYVSGLPKTMTQ-HELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-------GCTE 161 (352)
T ss_pred ceEEECCccccCCH-HHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-------CCce
Confidence 46999999999988 799999999999999987762 34568999999999999999999998863 3457
Q ss_pred eEEEEeccCCccccccc-CccCcCCCCCCCCC----------CCCcc---------------------------------
Q 019429 82 TLRITYSAHTDLSVKFQ-SHRSRDYTNPYLPV----------APSAI--------------------------------- 117 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~-~~~~~~~~~~~~~~----------~~~~~--------------------------------- 117 (341)
+|+|.+++......... ......+.++.... .....
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 88999886432111000 00000000000000 00000
Q ss_pred CccCC-----CcccC-CC---CCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEc
Q 019429 118 DASGQ-----LSVGL-DG---KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQY 183 (341)
Q Consensus 118 ~~~~~-----~~~~~-~~---~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F 183 (341)
..... ..... .+ ......+.+|+ |+||+..+|+++|+++|++||.|++|+|..+. +|+ |||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~-aFV~F 318 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIF--VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY-GFVSM 318 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce-EEEEE
Confidence 00000 00000 00 00012233566 99999999999999999999999999987543 677 99999
Q ss_pred CChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 184 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 184 ~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
.+.++|.+|++.|||..|.|+ .|+|+|+..+.
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr---~i~V~~~~~~~ 350 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNR---VLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCe---EEEEEEccCCC
Confidence 999999999999999999999 99999986543
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1e-26 Score=223.21 Aligned_cols=160 Identities=18% Similarity=0.292 Sum_probs=135.3
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..|+|+|||+++++ ++|+++|+.||+|.+|.|++ +.+++||||+|.+.|+|++||+.|||..| .|+
T Consensus 4 ~~l~V~nLp~~~~e-~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---------~g~ 73 (352)
T TIGR01661 4 TNLIVNYLPQTMTQ-EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---------QNK 73 (352)
T ss_pred cEEEEeCCCCCCCH-HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE---------CCe
Confidence 36999999999999 79999999999999998876 23456899999999999999999999885 699
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
+|+|+|++.+.-.. .... |+|.||+..+++++|+++|+.
T Consensus 74 ~i~v~~a~~~~~~~---------------------------------------~~~~--l~v~~l~~~~~~~~l~~~f~~ 112 (352)
T TIGR01661 74 TIKVSYARPSSDSI---------------------------------------KGAN--LYVSGLPKTMTQHELESIFSP 112 (352)
T ss_pred eEEEEeeccccccc---------------------------------------ccce--EEECCccccCCHHHHHHHHhc
Confidence 99999987542111 1233 449999999999999999999
Q ss_pred cCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 162 FGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 162 fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
||.|..+++..+ .+|+ |||+|++.++|..|++.|||..+.+. ...|+|.|+....
T Consensus 113 ~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A~~ai~~l~g~~~~g~-~~~i~v~~a~~~~ 172 (352)
T TIGR01661 113 FGQIITSRILSDNVTGLSKGV-GFIRFDKRDEADRAIKTLNGTTPSGC-TEPITVKFANNPS 172 (352)
T ss_pred cCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCCCC
Confidence 999999988653 2566 99999999999999999999998774 3488999987654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=2.2e-25 Score=226.94 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=131.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|||+|||.++++ ++|+++|++||+|.+|++.+ +++.+||||+|.+.++|++|++.||+..| .|++
T Consensus 2 sl~VgnLp~~vte-~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---------~gk~ 71 (562)
T TIGR01628 2 SLYVGDLDPDVTE-AKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---------GGKP 71 (562)
T ss_pred eEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCee
Confidence 6999999999988 79999999999999998876 33456899999999999999999999885 6999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|.|++......+ ..... |+|+||+.++|+++|+++|+.|
T Consensus 72 i~i~~s~~~~~~~~-------------------------------------~~~~~--vfV~nLp~~~~~~~L~~~F~~~ 112 (562)
T TIGR01628 72 IRIMWSQRDPSLRR-------------------------------------SGVGN--IFVKNLDKSVDNKALFDTFSKF 112 (562)
T ss_pred EEeecccccccccc-------------------------------------cCCCc--eEEcCCCccCCHHHHHHHHHhc
Confidence 99999864311100 00223 4599999999999999999999
Q ss_pred CCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 163 GPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 163 G~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|++|++... ++|+ |||+|++.++|.+|++.|||..+.++ .|.|....
T Consensus 113 G~i~~~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~~lng~~~~~~---~i~v~~~~ 165 (562)
T TIGR01628 113 GNILSCKVATDENGKSRGY-GFVHFEKEESAKAAIQKVNGMLLNDK---EVYVGRFI 165 (562)
T ss_pred CCcceeEeeecCCCCcccE-EEEEECCHHHHHHHHHHhcccEecCc---eEEEeccc
Confidence 99999998653 3566 99999999999999999999999998 88886543
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=5.1e-25 Score=218.77 Aligned_cols=169 Identities=20% Similarity=0.303 Sum_probs=135.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+++ +.++++|||+|.+.|+|.+||+ |+|..| .|
T Consensus 89 ~~~l~V~nlp~~~~~-~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---------~g 157 (457)
T TIGR01622 89 DRTVFVLQLALKARE-RDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---------LG 157 (457)
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---------CC
Confidence 688999999999887 78999999999999998876 3356689999999999999995 999885 69
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
++|.|.+++.......... . . . .+ ..+.+++|+ |+||+..+|+++|+++|+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~-~--~--~--------------------~~--~~p~~~~l~--v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAA-T--H--Q--------------------PG--DIPNFLKLY--VGNLHFNITEQELRQIFE 208 (457)
T ss_pred eeeEEeecchhhhhhhhcc-c--c--c--------------------CC--CCCCCCEEE--EcCCCCCCCHHHHHHHHH
Confidence 9999998763311100000 0 0 0 00 011245566 999999999999999999
Q ss_pred ccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 161 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 161 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
.||.|.+|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|++..
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~i~g~---~i~v~~a~~~ 266 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEAKEALEVMNGFELAGR---PIKVGYAQDS 266 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhcCCcEECCE---EEEEEEccCC
Confidence 9999999998743 2465 99999999999999999999999998 9999998733
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=208.80 Aligned_cols=165 Identities=19% Similarity=0.284 Sum_probs=139.3
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
|||.-||...+| +|||++|++||.|.+|.++| +.++++|||.|.+.++|.+|+.+|+++.. || ..-.+|
T Consensus 37 lfVgqIprt~sE-~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~kt----lp--G~~~pv 109 (510)
T KOG0144|consen 37 LFVGQIPRTASE-KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKT----LP--GMHHPV 109 (510)
T ss_pred heeccCCccccH-HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccc----cC--CCCcce
Confidence 789999999988 79999999999999999888 33567899999999999999999999885 34 345688
Q ss_pred EEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019429 84 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 163 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 163 (341)
.|.|+...+..+ ...+.|| |+-|+..+||++++++|++||
T Consensus 110 qvk~Ad~E~er~--------------------------------------~~e~KLF--vg~lsK~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 110 QVKYADGERERI--------------------------------------VEERKLF--VGMLSKQCTENEVREIFSRFG 149 (510)
T ss_pred eecccchhhhcc--------------------------------------ccchhhh--hhhccccccHHHHHHHHHhhC
Confidence 998887442221 0134566 888999999999999999999
Q ss_pred CeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCc
Q 019429 164 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 220 (341)
Q Consensus 164 ~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~ 220 (341)
.|++|.|+++ .+| ||||+|.++|.|..||+.|||..-..++..+|-|+|+++++.+
T Consensus 150 ~Ied~~ilrd~~~~sRG-caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 150 HIEDCYILRDPDGLSRG-CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccchhhheecccccccc-eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999999874 366 5999999999999999999999988776679999999877654
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1e-24 Score=218.34 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=132.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCc-ceEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~-V~~v~i~~-----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.++|||+|||+++++ ++|+++|+++++ |++++++. .+++++|||+|.++++|.+|++.|+...+. +
T Consensus 138 ~~rLFVgNLP~~~Te-eeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~-------l 209 (578)
T TIGR01648 138 NCRLFVGGIPKNKKR-EEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------L 209 (578)
T ss_pred CceeEeecCCcchhh-HHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE-------e
Confidence 467999999999988 689999999975 56665543 234567999999999999999998765543 5
Q ss_pred CCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019429 79 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 158 (341)
Q Consensus 79 ~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 158 (341)
.++.|+|+|+..+..... + .....++|+ |.||+.++|+|+|+++
T Consensus 210 ~Gr~I~VdwA~p~~~~d~-------~---------------------------~~~~~k~Lf--VgNL~~~~tee~L~~~ 253 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDE-------D---------------------------VMAKVKILY--VRNLMTTTTEEIIEKS 253 (578)
T ss_pred cCceEEEEeecccccccc-------c---------------------------ccccccEEE--EeCCCCCCCHHHHHHH
Confidence 699999999875421100 0 001134555 9999999999999999
Q ss_pred Hccc--CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 159 FSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 159 F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
|+.| |+|++|++.+ ++ |||+|++.++|.+|++.|||..|.++ .|+|+|+++.+.
T Consensus 254 F~~f~~G~I~rV~~~r---gf-AFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp~~~ 309 (578)
T TIGR01648 254 FSEFKPGKVERVKKIR---DY-AFVHFEDREDAVKAMDELNGKELEGS---EIEVTLAKPVDK 309 (578)
T ss_pred HHhcCCCceEEEEeec---Ce-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEccCCCc
Confidence 9999 9999998764 45 99999999999999999999999999 999999987653
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.6e-25 Score=195.06 Aligned_cols=158 Identities=18% Similarity=0.281 Sum_probs=136.3
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.|.|++||...|+ ||||.||+..|+|.++++++ +.+-+|+||.|.+.++|++||..|||-. +..++
T Consensus 43 NLIvNYLPQ~MTq-dE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr---------LQ~KT 112 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ-DELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR---------LQNKT 112 (360)
T ss_pred eeeeeecccccCH-HHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee---------eccce
Confidence 3778899999998 79999999999999999888 2345689999999999999999999988 46999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|+|+.++...++ ... +||.+||.++|..+|+++|++|
T Consensus 113 IKVSyARPSs~~Ik---------------------------------------~aN--LYvSGlPktMtqkelE~iFs~f 151 (360)
T KOG0145|consen 113 IKVSYARPSSDSIK---------------------------------------DAN--LYVSGLPKTMTQKELEQIFSPF 151 (360)
T ss_pred EEEEeccCChhhhc---------------------------------------ccc--eEEecCCccchHHHHHHHHHHh
Confidence 99999998755544 112 5699999999999999999999
Q ss_pred CCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 163 GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 163 G~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
|.|..-+|+.+ ++|. |||.|+.+++|+.||+.|||++-.|- ..+|.|+|+...
T Consensus 152 GrIItSRiL~dqvtg~srGV-gFiRFDKr~EAe~AIk~lNG~~P~g~-tepItVKFannP 209 (360)
T KOG0145|consen 152 GRIITSRILVDQVTGLSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGC-TEPITVKFANNP 209 (360)
T ss_pred hhhhhhhhhhhcccceecce-eEEEecchhHHHHHHHhccCCCCCCC-CCCeEEEecCCc
Confidence 99988777543 3676 99999999999999999999987764 669999998655
No 18
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=6.7e-24 Score=189.73 Aligned_cols=146 Identities=20% Similarity=0.287 Sum_probs=132.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
-|||.|||.++++ .+|+.||++||+|+++.|+| .||||..+|+..|+.||..|||.+| .|..|.|+
T Consensus 4 KLFIGNLp~~~~~-~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtL---------hg~nInVe 69 (346)
T KOG0109|consen 4 KLFIGNLPREATE-QELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTL---------HGVNINVE 69 (346)
T ss_pred chhccCCCcccch-HHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhccccee---------cceEEEEE
Confidence 3899999999998 79999999999999999986 5899999999999999999999994 79999999
Q ss_pred eccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCee
Q 019429 87 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 166 (341)
Q Consensus 87 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~ 166 (341)
-|+.+. ..++.|+ |+|+...++.++|+..|++||.|.
T Consensus 70 aSksKs-----------------------------------------k~stkl~--vgNis~tctn~ElRa~fe~ygpvi 106 (346)
T KOG0109|consen 70 ASKSKS-----------------------------------------KASTKLH--VGNISPTCTNQELRAKFEKYGPVI 106 (346)
T ss_pred eccccC-----------------------------------------CCccccc--cCCCCccccCHHHhhhhcccCCce
Confidence 888651 0255567 999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 167 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 167 ~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
++.|.+ + ++||+|+-.++|..|++.|||+++.|+ +|+|.+|..
T Consensus 107 ecdivk---d-y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~sts 149 (346)
T KOG0109|consen 107 ECDIVK---D-YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLSTS 149 (346)
T ss_pred eeeeec---c-eeEEEEeeccchHHHHhcccccccccc---eeeeeeecc
Confidence 999986 3 599999999999999999999999999 999998854
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=176.99 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=134.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|++.||+..+++ +.|++||-+.|.|+++.+.+ ....+||||||.++|+|+-|++.||+.++| ||+
T Consensus 11 tiyvgnld~kvs~-~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---------grp 80 (203)
T KOG0131|consen 11 TLYVGNLDEKVSE-ELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---------GRP 80 (203)
T ss_pred eEEEecCCHHHHH-HHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---------Cce
Confidence 7899999999998 79999999999999999887 235568999999999999999999988865 999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|..+.....++. .+..|| |+||+..|++..|+++|+.|
T Consensus 81 Irv~kas~~~~nl~--------------------------------------vganlf--vgNLd~~vDe~~L~dtFsaf 120 (203)
T KOG0131|consen 81 IRVNKASAHQKNLD--------------------------------------VGANLF--VGNLDPEVDEKLLYDTFSAF 120 (203)
T ss_pred eEEEeccccccccc--------------------------------------cccccc--ccccCcchhHHHHHHHHHhc
Confidence 99997662211110 133456 99999999999999999999
Q ss_pred CCeeEE-EEEc-----CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCc
Q 019429 163 GPVQKI-AMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 220 (341)
Q Consensus 163 G~v~~v-~i~~-----~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~ 220 (341)
|.+.+. +|++ +.+|+ |||.|++.|.+.+|+..|||+.+.++ +++|+|++.++.+
T Consensus 121 G~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd~ai~s~ngq~l~nr---~itv~ya~k~~~k 180 (203)
T KOG0131|consen 121 GVLISPPKIMRDPDTGNPKGF-GFINYASFEASDAAIGSMNGQYLCNR---PITVSYAFKKDTK 180 (203)
T ss_pred cccccCCcccccccCCCCCCC-eEEechhHHHHHHHHHHhccchhcCC---ceEEEEEEecCCC
Confidence 988774 3443 22456 99999999999999999999999999 9999999887754
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.1e-22 Score=204.54 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=133.6
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+.|||+|||+.+++ ++|+++|+.||.|..+.+++ +.++++|||+|.+.++|..|++.|||..| .|
T Consensus 295 ~~~l~v~nlp~~~~~-~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---------~~ 364 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE-DQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---------GD 364 (509)
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 368999999999988 79999999999999998776 33566899999999999999999999995 59
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCC----------C
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA----------V 150 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~----------v 150 (341)
+.|+|.++.......... ..... .+ ......... .. .......++.+|+ |.|+... .
T Consensus 365 ~~l~v~~a~~~~~~~~~~--~~~~~-~~-~~~~~~~~~---~~----~~~~~~~~s~v~~--l~N~~~~~~l~~d~~~~~ 431 (509)
T TIGR01642 365 NKLHVQRACVGANQATID--TSNGM-AP-VTLLAKALS---QS----ILQIGGKPTKVVQ--LTNLVTGDDLMDDEEYEE 431 (509)
T ss_pred eEEEEEECccCCCCCCcc--ccccc-cc-cccccccch---hh----hccccCCCceEEE--eccCCchhHhcCcchHHH
Confidence 999999986432111000 00000 00 000000000 00 0001123466777 7787421 1
Q ss_pred CHHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 151 TLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 151 t~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
..++|+++|++||.|++|+|.... .|+ |||+|++.++|.+|++.|||..|.|+ .|.|+|.....
T Consensus 432 ~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~-~fV~F~~~e~A~~A~~~lnGr~~~gr---~v~~~~~~~~~ 503 (509)
T TIGR01642 432 IYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK-VFLEYADVRSAEKAMEGMNGRKFNDR---VVVAAFYGEDC 503 (509)
T ss_pred HHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEeCHHH
Confidence 136799999999999999987531 355 99999999999999999999999999 99999976543
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=6.2e-23 Score=205.61 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=125.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
...|||+|||+++++ ++|+++|++||+|.+|+|++ +.+++||||+|.+.|+|++||+.||+.+| ..++
T Consensus 58 ~~~lFVgnLp~~~tE-d~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--------~~Gr 128 (578)
T TIGR01648 58 GCEVFVGKIPRDLYE-DELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--------RPGR 128 (578)
T ss_pred CCEEEeCCCCCCCCH-HHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee--------cCCc
Confidence 357999999999988 79999999999999998876 34556899999999999999999999986 3467
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
.|.|..|.. ++.|+ |+||+.++|+++|+++|+.
T Consensus 129 ~l~V~~S~~---------------------------------------------~~rLF--VgNLP~~~TeeeL~eeFsk 161 (578)
T TIGR01648 129 LLGVCISVD---------------------------------------------NCRLF--VGGIPKNKKREEILEEFSK 161 (578)
T ss_pred ccccccccc---------------------------------------------CceeE--eecCCcchhhHHHHHHhhc
Confidence 666654321 23455 9999999999999999999
Q ss_pred cCC-eeEEEEEc------CCCCeEEEEEcCChhHHHHHHHHhcC--ceeCCCCcceEEEEeecCC
Q 019429 162 FGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 162 fG~-v~~v~i~~------~~~g~~afV~F~~~~~A~~Ai~~l~g--~~i~~~~~~~l~v~~s~~~ 217 (341)
++. |+++.++. +++|| |||+|++.++|.+|++.|+. ..|.++ .|+|+|+.+.
T Consensus 162 v~egvv~vIv~~~~~~kgKnRGF-AFVeF~s~edAa~AirkL~~gki~l~Gr---~I~VdwA~p~ 222 (578)
T TIGR01648 162 VTEGVVDVIVYHSAADKKKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH---VIAVDWAEPE 222 (578)
T ss_pred ccCCceEEEEeccccccCccCce-EEEEcCCHHHHHHHHHHhhccceEecCc---eEEEEeeccc
Confidence 974 55555432 34677 99999999999999998864 356788 9999999754
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.3e-22 Score=204.19 Aligned_cols=184 Identities=19% Similarity=0.203 Sum_probs=127.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhcc------------CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAF------------GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY 72 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~f------------G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~ 72 (341)
-|+|||+|||+++++ ++|+++|+.| +.|.++.+.+ .++||||+|.+.|+|.+|| .|||..|
T Consensus 175 ~r~lyVgnLp~~~t~-~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~~~--- 247 (509)
T TIGR01642 175 ARRLYVGGIPPEFVE-EAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSIIY--- 247 (509)
T ss_pred ccEEEEeCCCCCCCH-HHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCeEe---
Confidence 488999999999988 7999999986 2344444433 4567999999999999999 5999874
Q ss_pred CCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCH
Q 019429 73 LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTL 152 (341)
Q Consensus 73 ~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~ 152 (341)
.|+.|+|...+...-..... .......+... ..... ... .........+.|+ |+||+..+|+
T Consensus 248 ------~g~~l~v~r~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~-~~~--~~~~~~~~~~~l~--v~nlp~~~~~ 309 (509)
T TIGR01642 248 ------SNVFLKIRRPHDYIPVPQIT--PEVSQKNPDDN-----AKNVE-KLV--NSTTVLDSKDRIY--IGNLPLYLGE 309 (509)
T ss_pred ------eCceeEecCccccCCccccC--CCCCCCCCccc-----ccccc-ccc--ccccCCCCCCEEE--EeCCCCCCCH
Confidence 68999997543211000000 00000000000 00000 000 0000011245555 9999999999
Q ss_pred HHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 153 DVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 153 ~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
++|+++|+.||.|..+.|+.. ++|+ |||+|.+.++|..|++.|||..|.++ .|+|.++...
T Consensus 310 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~---~l~v~~a~~~ 375 (509)
T TIGR01642 310 DQIKELLESFGDLKAFNLIKDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN---KLHVQRACVG 375 (509)
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECccC
Confidence 999999999999999988643 3576 99999999999999999999999999 9999998644
No 23
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.89 E-value=4.8e-22 Score=183.01 Aligned_cols=198 Identities=27% Similarity=0.405 Sum_probs=160.8
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEe
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 87 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~ 87 (341)
+.|-|--|-+|. |.|+.++...|+|.+|+|++| ++-||.|||.+.+.|++|...|||..|| -++++|+|+|
T Consensus 125 ~TIlNp~YpItv-DVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIY-------sGCCTLKIey 195 (494)
T KOG1456|consen 125 FTILNPQYPITV-DVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIY-------SGCCTLKIEY 195 (494)
T ss_pred EEeecCccccch-hhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhccccccc-------ccceeEEEEe
Confidence 456677788888 899999999999999999987 6779999999999999999999999999 6899999999
Q ss_pred ccCCcccccccCccCcCCCCCCCCCC--CCc--cCc------------------cC-------CCc--------------
Q 019429 88 SAHTDLSVKFQSHRSRDYTNPYLPVA--PSA--IDA------------------SG-------QLS-------------- 124 (341)
Q Consensus 88 s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~--~~~------------------~~-------~~~-------------- 124 (341)
+++.+|.+..+...+|||+.|++... +.+ .+. .+ .+.
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 99999999888888899998866311 111 000 00 000
Q ss_pred ccCCCCCCCCCCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 125 VGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 125 ~~~~~~~~~~~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
.+.+......+++|+-|| +|+ ..++.|.|.++|+.||.|++|++++.+.|. |.||+.|..+.++|+..||+..++|
T Consensus 276 ~g~a~p~g~~~g~VmMVy--GLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt-amVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVY--GLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT-AMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCCCCCCCcEEEEE--eccccccchhhhhhhhhhcCceeeEEEeecccce-eEEEcCcHHHHHHHHHHhccCcccc
Confidence 000111224568888855 453 478899999999999999999999988886 9999999999999999999999999
Q ss_pred CCcceEEEEeecCCCCc
Q 019429 204 GGFCKLHISYSRHTDLS 220 (341)
Q Consensus 204 ~~~~~l~v~~s~~~~~~ 220 (341)
+ +|.|.+||...+.
T Consensus 353 ~---kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 353 G---KLNVCVSKQNFVS 366 (494)
T ss_pred c---eEEEeeccccccc
Confidence 9 9999999887643
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=4.1e-22 Score=197.95 Aligned_cols=198 Identities=17% Similarity=0.264 Sum_probs=135.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
++.|+|+|||.++++ ++|+++|+.||.|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..| .|
T Consensus 186 ~~~l~v~nl~~~~te-~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---------~g 255 (457)
T TIGR01622 186 FLKLYVGNLHFNITE-QELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---------AG 255 (457)
T ss_pred CCEEEEcCCCCCCCH-HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---------CC
Confidence 578999999999888 789999999999999988762 3456899999999999999999999885 69
Q ss_pred ceEEEEeccCCcccccc-cCc--------cCcCCCCCC-------CCCC----CCccCcc-------------C--C---
Q 019429 81 CTLRITYSAHTDLSVKF-QSH--------RSRDYTNPY-------LPVA----PSAIDAS-------------G--Q--- 122 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~-~~~--------~~~~~~~~~-------~~~~----~~~~~~~-------------~--~--- 122 (341)
++|+|.|++........ +.. .......+. +... ...+.+. + .
T Consensus 256 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (457)
T TIGR01622 256 RPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNI 335 (457)
T ss_pred EEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccc
Confidence 99999997632111000 000 000000000 0000 0000000 0 0
Q ss_pred C---cc----c------CCCCCCCCCCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEE-cCCCCeE
Q 019429 123 L---SV----G------LDGKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMF-DKNGGLQ 178 (341)
Q Consensus 123 ~---~~----~------~~~~~~~~~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~-~~~~g~~ 178 (341)
+ .. . .........+++|+ |.|+....+ .++|++.|++||+|++|.+. ....|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~- 412 (457)
T TIGR01622 336 PSRYATGALAIMARNSFVPSTNNNLATTCLV--LSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGK- 412 (457)
T ss_pred cccccccccccccCCCCCCcccCCCCCcEEE--EecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCcee-
Confidence 0 00 0 00000123456666 778854433 36799999999999999987 444676
Q ss_pred EEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 179 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 179 afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+||+|.+.++|.+|++.|||..+.|+ .|.+.|.....
T Consensus 413 ~fV~F~~~e~A~~A~~~lnGr~f~gr---~i~~~~~~~~~ 449 (457)
T TIGR01622 413 IYLKFSSVDAALAAFQALNGRYFGGK---MITAAFVVNDV 449 (457)
T ss_pred EEEEECCHHHHHHHHHHhcCcccCCe---EEEEEEEcHHH
Confidence 99999999999999999999999999 99999986554
No 25
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.88 E-value=2.3e-21 Score=168.85 Aligned_cols=194 Identities=23% Similarity=0.363 Sum_probs=141.6
Q ss_pred ccccccCCCCCCCCHHHHHH----HhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAH----VFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~----lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
++|+|+||...+.- ++|+. ||++||+|++|+.++ .+.+++|||.|.+.+.|..|++.|+|..++ |
T Consensus 10 ~TlYInnLnekI~~-~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy---------g 79 (221)
T KOG4206|consen 10 GTLYINNLNEKIKK-DELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY---------G 79 (221)
T ss_pred ceEeehhccccccH-HHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc---------C
Confidence 48999999999988 67777 999999999999887 344568999999999999999999999976 9
Q ss_pred ceEEEEeccCC-ccccccc---CccCcCCCCCCCC--CCCC-ccCccC-----CCcccCCCCCCCCCCcEEEEEeecCCC
Q 019429 81 CTLRITYSAHT-DLSVKFQ---SHRSRDYTNPYLP--VAPS-AIDASG-----QLSVGLDGKKLEPESNVLLASIENMQY 148 (341)
Q Consensus 81 ~~i~v~~s~~~-~l~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~-----~~~~~~~~~~~~~~s~vl~v~v~nl~~ 148 (341)
++++|+||+.+ +...+.. .++...+..-.+. ..+. ...... ......- ....+++.+|+ +.|+|.
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~-~~~~ppn~ilf--~~niP~ 156 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL-AQMAPPNNILF--LTNIPS 156 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCcc-ccCCCCceEEE--EecCCc
Confidence 99999999855 2222200 1110000000000 0000 000000 0000000 22346678888 899999
Q ss_pred CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 149 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 149 ~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
+++.+.|..+|+.|....+|++.....+. |||+|.+...|..|.+.|+|..|.-+ ..|+|+|++
T Consensus 157 es~~e~l~~lf~qf~g~keir~i~~~~~i-Afve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a~ 220 (221)
T KOG4206|consen 157 ESESEMLSDLFEQFPGFKEIRLIPPRSGI-AFVEFLSDRQASAAQQALQGFKITKK--NTMQITFAK 220 (221)
T ss_pred chhHHHHHHHHhhCcccceeEeccCCCce-eEEecchhhhhHHHhhhhccceeccC--ceEEecccC
Confidence 99999999999999999999988766565 99999999999999999999999843 399999986
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.6e-21 Score=185.66 Aligned_cols=177 Identities=19% Similarity=0.233 Sum_probs=139.0
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
-+||+++||+.++. ++|.++|+.+|.|..+++.. +..++|+||+|.-.|++++|+..+++.. +.|+
T Consensus 6 ~TlfV~~lp~~~~~-~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k---------f~Gr 75 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTG-EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK---------FEGR 75 (678)
T ss_pred ceEEEecCCCccch-hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc---------ccce
Confidence 47999999999999 78999999999999987776 2345679999999999999999999988 4799
Q ss_pred eEEEEeccCCc-cc-ccc----cCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHH
Q 019429 82 TLRITYSAHTD-LS-VKF----QSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVL 155 (341)
Q Consensus 82 ~i~v~~s~~~~-l~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L 155 (341)
.|+|..++++. .. ... ++.+...-.++. .....-+...|. |.|||..+..++|
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~-------------------k~~v~~~k~rLI--IRNLPf~~k~~dL 134 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPT-------------------KAKVDLPKWRLI--IRNLPFKCKKPDL 134 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCcc-------------------hhhccCccceEE--eecCCcccCcHHH
Confidence 99999998652 22 110 000000000000 000011133455 9999999999999
Q ss_pred HHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 156 HMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 156 ~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
+.+|+.||.|..|.|+++. .|| |||+|.+..+|..|++.+||.+|.|+ +|-|+||-.+
T Consensus 135 k~vFs~~G~V~Ei~IP~k~dgklcGF-aFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVDWAV~K 196 (678)
T KOG0127|consen 135 KNVFSNFGKVVEIVIPRKKDGKLCGF-AFVQFKEKKDAEKALEFFNGNKIDGR---PVAVDWAVDK 196 (678)
T ss_pred HHHHhhcceEEEEEcccCCCCCccce-EEEEEeeHHHHHHHHHhccCceecCc---eeEEeeeccc
Confidence 9999999999999998765 357 99999999999999999999999999 9999999654
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=6.7e-21 Score=182.81 Aligned_cols=195 Identities=19% Similarity=0.279 Sum_probs=135.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~---~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.|.||||||.|.. .+|+.+|+.||.|.+|.|.++. -.+||||.|.+..+|..|++.+||.+| .||+|
T Consensus 119 rLIIRNLPf~~k~-~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i---------~gR~V 188 (678)
T KOG0127|consen 119 RLIIRNLPFKCKK-PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI---------DGRPV 188 (678)
T ss_pred eEEeecCCcccCc-HHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee---------cCcee
Confidence 5899999999999 5999999999999999998732 124699999999999999999999996 69999
Q ss_pred EEEeccCCcccccc--------------------cCccCcCCCCCC-----CCCC------------------CCccCcc
Q 019429 84 RITYSAHTDLSVKF--------------------QSHRSRDYTNPY-----LPVA------------------PSAIDAS 120 (341)
Q Consensus 84 ~v~~s~~~~l~~~~--------------------~~~~~~~~~~~~-----~~~~------------------~~~~~~~ 120 (341)
.|.|+-.++..-.. .++...++..-+ .... .+.+|..
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~ 268 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDE 268 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccc
Confidence 99998765322110 011111110000 0000 0001100
Q ss_pred ---CCCcccCCCCCC-----CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChh
Q 019429 121 ---GQLSVGLDGKKL-----EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQ 187 (341)
Q Consensus 121 ---~~~~~~~~~~~~-----~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~ 187 (341)
+.......+... .....++| |.||++.+|+++|.+.|++||+|..+.|... ..|. |||+|.+..
T Consensus 269 e~S~~~~~~k~~q~k~~~en~~~~~tVF--vRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGt-AFv~Fkt~~ 345 (678)
T KOG0127|consen 269 ESSGKKESDKKAQNKTTRENITEGKTVF--VRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGT-AFVKFKTQI 345 (678)
T ss_pred cccccCcccchhccccccccccccceEE--EecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccc-eEEEeccHH
Confidence 000000000000 11234555 9999999999999999999999999887542 2464 999999999
Q ss_pred HHHHHHHHh-----cC-ceeCCCCcceEEEEeecCC
Q 019429 188 TAVVAKEAL-----EG-HCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 188 ~A~~Ai~~l-----~g-~~i~~~~~~~l~v~~s~~~ 217 (341)
+|..||++. .| ..|.|+ .|+|..+-..
T Consensus 346 ~~~~ci~~Aspa~e~g~~ll~GR---~Lkv~~Av~R 378 (678)
T KOG0127|consen 346 AAQNCIEAASPASEDGSVLLDGR---LLKVTLAVTR 378 (678)
T ss_pred HHHHHHHhcCccCCCceEEEecc---EEeeeeccch
Confidence 999999987 34 667888 9999988543
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.2e-20 Score=164.91 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=139.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.-.|+|+-||...|. .||+++|++||.|...+|+- +-+++-+||.|...++|+.||+.|||..-. ...
T Consensus 127 ~aNLYvSGlPktMtq-kelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-------g~t 198 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQ-KELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-------GCT 198 (360)
T ss_pred ccceEEecCCccchH-HHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-------CCC
Confidence 446899999999988 78999999999987665554 335567999999999999999999998842 455
Q ss_pred ceEEEEeccCCccccc-------ccCccCcCCCCCCCCCCC-------------------CccCcc-CCCcccCCCCCCC
Q 019429 81 CTLRITYSAHTDLSVK-------FQSHRSRDYTNPYLPVAP-------------------SAIDAS-GQLSVGLDGKKLE 133 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~-------~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~~ 133 (341)
.+|.|.|++....... ..+ ..|.|.+|...... -.+|+. +...+.+.+. .
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~s-p~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~--~ 275 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQS-PARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG--P 275 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcC-ccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC--C
Confidence 6899999984321111 111 12333333211110 011110 0001111111 1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
...-++| |.||.++.+|..|+++|++||.|+.|++.++- +|| |||.+.+.++|..|+..|||+.+.++ .
T Consensus 276 ~~g~ciF--vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf-gFVtMtNYdEAamAi~sLNGy~lg~r---v 349 (360)
T KOG0145|consen 276 GGGWCIF--VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF-GFVTMTNYDEAAMAIASLNGYRLGDR---V 349 (360)
T ss_pred CCeeEEE--EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccce-eEEEecchHHHHHHHHHhcCccccce---E
Confidence 2245566 78999999999999999999999999987532 577 99999999999999999999999999 9
Q ss_pred EEEEeecC
Q 019429 209 LHISYSRH 216 (341)
Q Consensus 209 l~v~~s~~ 216 (341)
|.|+|...
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99999543
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=185.85 Aligned_cols=168 Identities=21% Similarity=0.328 Sum_probs=138.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecC-------CceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTA-------GFQALVQFSDTETASSAKNALDGRSIPRYLLPE 76 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~-------g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 76 (341)
.|+ |+++||+|++|. ++|..+|+..|.|.++.|.++.+ .++|||+|.+.|+|++|++.|+|..|
T Consensus 515 ~t~-lfvkNlnf~Tt~-e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl------- 585 (725)
T KOG0110|consen 515 ETK-LFVKNLNFDTTL-EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL------- 585 (725)
T ss_pred chh-hhhhcCCcccch-hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee-------
Confidence 355 999999999999 78999999999999997776332 26799999999999999999999985
Q ss_pred CCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHH
Q 019429 77 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 156 (341)
Q Consensus 77 ~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~ 156 (341)
.|+.|.|++|..+...... +.... ....+.|+ |.|+|...+..+++
T Consensus 586 --dGH~l~lk~S~~k~~~~~g---K~~~~---------------------------kk~~tKIl--VRNipFeAt~rEVr 631 (725)
T KOG0110|consen 586 --DGHKLELKISENKPASTVG---KKKSK---------------------------KKKGTKIL--VRNIPFEATKREVR 631 (725)
T ss_pred --cCceEEEEeccCccccccc---ccccc---------------------------ccccceee--eeccchHHHHHHHH
Confidence 6999999999833211110 00000 01134566 99999999999999
Q ss_pred HHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 157 MVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 157 ~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+||+.||.|..|+|+.+. +|| |||+|-+..+|..|+.+|..+.|+|+ .|-+.|++...
T Consensus 632 ~LF~aFGqlksvRlPKK~~k~a~rGF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVLEwA~~d~ 694 (725)
T KOG0110|consen 632 KLFTAFGQLKSVRLPKKIGKGAHRGF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVLEWAKSDN 694 (725)
T ss_pred HHHhcccceeeeccchhhcchhhccc-eeeeccCcHHHHHHHHhhcccceech---hhheehhccch
Confidence 999999999999998762 677 99999999999999999999999999 99999998664
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5e-19 Score=169.93 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=128.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec-CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~-~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
+|+|. .++|+ +.|.++|+++|.|++|++-+.. +-+||||.|.+.++|++|+++||... ++|++|+|
T Consensus 3 sl~vg---~~v~e-~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~---------~~~~~~ri 69 (369)
T KOG0123|consen 3 SLYVG---PDVTE-AMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDV---------LKGKPIRI 69 (369)
T ss_pred ceecC---CcCCh-HHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcc---------cCCcEEEe
Confidence 35566 55555 8999999999999999766622 45689999999999999999999988 57999999
Q ss_pred EeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019429 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 165 (341)
Q Consensus 86 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 165 (341)
-||.... .. |+|.||++.+|.++|++.|+.||+|
T Consensus 70 m~s~rd~--------------------------------------------~~--~~i~nl~~~~~~~~~~d~f~~~g~i 103 (369)
T KOG0123|consen 70 MWSQRDP--------------------------------------------SL--VFIKNLDESIDNKSLYDTFSEFGNI 103 (369)
T ss_pred ehhccCC--------------------------------------------ce--eeecCCCcccCcHHHHHHHHhhcCe
Confidence 9988551 11 6699999999999999999999999
Q ss_pred eEEEEEcCCCCe--EEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCcc
Q 019429 166 QKIAMFDKNGGL--QALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 221 (341)
Q Consensus 166 ~~v~i~~~~~g~--~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~ 221 (341)
++|++..+..|. + ||+|++.++|.+|++.|||..+.++ .|.|.....+..+.
T Consensus 104 lS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 104 LSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFERKEERE 157 (369)
T ss_pred eEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeeccchhhhc
Confidence 999987765432 3 9999999999999999999999999 99998776655443
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1e-19 Score=167.23 Aligned_cols=163 Identities=16% Similarity=0.263 Sum_probs=130.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
-|| +++..|.+|..+ |.||..|..||.|++|.+-. .+.++||||||+-.|.|+.|++.|||.. ++
T Consensus 113 McR-vYVGSIsfEl~E-DtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m---------lG 181 (544)
T KOG0124|consen 113 MCR-VYVGSISFELRE-DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---------LG 181 (544)
T ss_pred hHh-eeeeeeEEEech-HHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc---------cc
Confidence 466 689999999999 89999999999999997654 3455679999999999999999999988 58
Q ss_pred CceEEEEeccCC---cccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHH
Q 019429 80 PCTLRITYSAHT---DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 156 (341)
Q Consensus 80 g~~i~v~~s~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~ 156 (341)
||.|+|..-..- .-.++.-.+.. ..--.|||..+....+|++|+
T Consensus 182 GRNiKVgrPsNmpQAQpiID~vqeeA---------------------------------k~fnRiYVaSvHpDLSe~DiK 228 (544)
T KOG0124|consen 182 GRNIKVGRPSNMPQAQPIIDMVQEEA---------------------------------KKFNRIYVASVHPDLSETDIK 228 (544)
T ss_pred CccccccCCCCCcccchHHHHHHHHH---------------------------------HhhheEEeeecCCCccHHHHH
Confidence 999999843211 00011000011 111237788998999999999
Q ss_pred HHHcccCCeeEEEEEc-----CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 157 MVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 157 ~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.+|+.||+|++|.+-+ +.+|+ +||+|.+..+...|+..||-..|.|+ -|+|--+
T Consensus 229 SVFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVGk~ 287 (544)
T KOG0124|consen 229 SVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKC 287 (544)
T ss_pred HHHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHHhhhcchhhcccc---eEecccc
Confidence 9999999999999843 34676 99999999999999999999999999 8888744
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=152.78 Aligned_cols=202 Identities=22% Similarity=0.320 Sum_probs=141.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|-|||.-|...-.| ||+|.||..||+|.++.+++ +.++++|||.|.+..+|..||..|+|... +| ...
T Consensus 18 ~drklfvgml~kqq~e-~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqT----mp--GAS 90 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSE-DDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQT----MP--GAS 90 (371)
T ss_pred cchhhhhhhhcccccH-HHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccccc----CC--CCc
Confidence 3578999999887766 79999999999999999998 45677899999999999999999999874 33 446
Q ss_pred ceEEEEeccC-Ccccccc----------cCccCc-------------------------CC-------------------
Q 019429 81 CTLRITYSAH-TDLSVKF----------QSHRSR-------------------------DY------------------- 105 (341)
Q Consensus 81 ~~i~v~~s~~-~~l~~~~----------~~~~~~-------------------------~~------------------- 105 (341)
..|.|.|+.. ++...++ -+.-.. .|
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 6788888762 2111100 000000 00
Q ss_pred -----CCCCCCCCC---------Cc---------cCcc--------CCC------------------cc-----------
Q 019429 106 -----TNPYLPVAP---------SA---------IDAS--------GQL------------------SV----------- 125 (341)
Q Consensus 106 -----~~~~~~~~~---------~~---------~~~~--------~~~------------------~~----------- 125 (341)
..|-++.+. +. +.+. +++ .+
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence 001111000 00 0000 000 00
Q ss_pred ----------------cCC--------CCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CC
Q 019429 126 ----------------GLD--------GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GG 176 (341)
Q Consensus 126 ----------------~~~--------~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g 176 (341)
.+. -....+.++.|| |..||.+..+.+|.+.|-.||.|++.++|.++ +-
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlF--IYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKC 328 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLF--IYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKC 328 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEE--EEeCchhhccHHHHHHhccccceeeeeeeehhccccccc
Confidence 000 011236678888 77999999999999999999999999987543 33
Q ss_pred eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 177 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 177 ~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
| +||.|+++.+|..||.+|||..|.=+ +|+|.+.++++
T Consensus 329 F-GFVSfDNp~SaQaAIqAMNGFQIGMK---RLKVQLKRPkd 366 (371)
T KOG0146|consen 329 F-GFVSFDNPASAQAAIQAMNGFQIGMK---RLKVQLKRPKD 366 (371)
T ss_pred e-eeEecCCchhHHHHHHHhcchhhhhh---hhhhhhcCccc
Confidence 5 99999999999999999999999888 99999866655
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.2e-18 Score=165.48 Aligned_cols=161 Identities=19% Similarity=0.260 Sum_probs=130.4
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
++|+||+.++++ ++|+++|+.||+|++|++... -++++ ||+|.+.++|++||+.|||.- +.++.|.|
T Consensus 79 ~~i~nl~~~~~~-~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~l---------l~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDN-KSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGML---------LNGKKIYV 147 (369)
T ss_pred eeecCCCcccCc-HHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcc---------cCCCeeEE
Confidence 789999999999 799999999999999988873 25667 999999999999999999987 57999999
Q ss_pred EeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019429 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 165 (341)
Q Consensus 86 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 165 (341)
.....+........+....+ -.|++.|....++++.|.++|+.||.|
T Consensus 148 g~~~~~~er~~~~~~~~~~~---------------------------------t~v~vk~~~~~~~~~~l~~~f~~~g~i 194 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRF---------------------------------TNVYVKNLEEDSTDEELKDLFSAYGSI 194 (369)
T ss_pred eeccchhhhcccccchhhhh---------------------------------hhhheeccccccchHHHHHhhcccCcc
Confidence 87665432211111011111 115588888999999999999999999
Q ss_pred eEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 166 QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 166 ~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
+.+.+.++ .+|+ +||+|++.++|..|++.|++....+. .+.|.-+..
T Consensus 195 ~s~~v~~~~~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V~~aqk 245 (369)
T KOG0123|consen 195 TSVAVMRDSIGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDK---ELYVGRAQK 245 (369)
T ss_pred eEEEEeecCCCCCCCc-cceeecChhHHHHHHHhccCCcCCcc---ceeeccccc
Confidence 99998753 3566 99999999999999999999998877 777776654
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=4.8e-17 Score=163.72 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=67.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.++|||+||+.++++ ++|+++|+.||+|.++++.+ +.+++||||+|.+.++|.+||+.|||.+ ++|
T Consensus 204 ~~rLfVgnLp~~vte-edLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e---------lgG 273 (612)
T TIGR01645 204 FNRIYVASVHPDLSE-TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGG 273 (612)
T ss_pred cceEEeecCCCCCCH-HHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe---------eCC
Confidence 357999999999998 78999999999999998886 2355689999999999999999999998 479
Q ss_pred ceEEEEeccC
Q 019429 81 CTLRITYSAH 90 (341)
Q Consensus 81 ~~i~v~~s~~ 90 (341)
+.|+|.++..
T Consensus 274 r~LrV~kAi~ 283 (612)
T TIGR01645 274 QYLRVGKCVT 283 (612)
T ss_pred eEEEEEecCC
Confidence 9999998763
No 35
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=8.5e-17 Score=139.49 Aligned_cols=190 Identities=21% Similarity=0.228 Sum_probs=125.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhcc-CcceEEEEeeecC----CceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAF-GFVHKITTFEKTA----GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~f-G~V~~v~i~~~~~----g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
-|+|||+-||.|+.- .||+.||.+| |--...+-+..+. +-.|||+|.+..+|..|++.|||..+.+ -.
T Consensus 34 VRTLFVSGLP~DvKp-REiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp------E~ 106 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKP-REIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP------ET 106 (284)
T ss_pred cceeeeccCCcccCH-HHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc------cc
Confidence 599999999999999 7999999999 4433322222111 1469999999999999999999999762 46
Q ss_pred CceEEEEeccCC--cccccccC-c-cCcCC--C-------------------CCCCCCCCCccCc---cC----------
Q 019429 80 PCTLRITYSAHT--DLSVKFQS-H-RSRDY--T-------------------NPYLPVAPSAIDA---SG---------- 121 (341)
Q Consensus 80 g~~i~v~~s~~~--~l~~~~~~-~-~~~~~--~-------------------~~~~~~~~~~~~~---~~---------- 121 (341)
+.+|+|++++.. ....+... . .+..+ . +|+.......-+. ..
T Consensus 107 ~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~ 186 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAP 186 (284)
T ss_pred CceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhh
Confidence 889999998732 11111000 0 00000 0 0000000000000 00
Q ss_pred ---CCcc---cC---CCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHH
Q 019429 122 ---QLSV---GL---DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 192 (341)
Q Consensus 122 ---~~~~---~~---~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A 192 (341)
.++. .| .+......+.+|| |.||..+||||+|+++|++|-....++|..+++-..|||+|++.+.|..|
T Consensus 187 ~~~~P~a~a~l~ks~q~~~~~~acstlf--ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 187 DSKAPSANAHLEKSSQGGSGARACSTLF--IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDA 264 (284)
T ss_pred hhcCCcccchhhhhhcccccchhhhhHh--hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHH
Confidence 0000 00 0112233456677 99999999999999999999999999988776444699999999999999
Q ss_pred HHHhcCceeCC
Q 019429 193 KEALEGHCIYD 203 (341)
Q Consensus 193 i~~l~g~~i~~ 203 (341)
+..|+|..|..
T Consensus 265 m~~lqg~~~s~ 275 (284)
T KOG1457|consen 265 MNHLQGNLLSS 275 (284)
T ss_pred HHHhhcceecc
Confidence 99999988753
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.2e-16 Score=150.06 Aligned_cols=79 Identities=27% Similarity=0.291 Sum_probs=69.5
Q ss_pred eecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 3 YICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
...|-|||+-|+..+++ .|++++|++||.|.+|.|++ +.++++|||.|.++|.|..||+.|||... ..
T Consensus 122 ~~e~KLFvg~lsK~~te-~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~t--------me 192 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTE-NEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQT--------ME 192 (510)
T ss_pred ccchhhhhhhccccccH-HHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcccee--------ec
Confidence 45788999999999999 79999999999999999998 55677899999999999999999999864 34
Q ss_pred C--ceEEEEeccC
Q 019429 80 P--CTLRITYSAH 90 (341)
Q Consensus 80 g--~~i~v~~s~~ 90 (341)
| .+|.|.|+..
T Consensus 193 Gcs~PLVVkFADt 205 (510)
T KOG0144|consen 193 GCSQPLVVKFADT 205 (510)
T ss_pred cCCCceEEEeccc
Confidence 4 4899999873
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.6e-16 Score=140.04 Aligned_cols=133 Identities=16% Similarity=0.282 Sum_probs=106.6
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
=|+|+|.||..++|+ +.|..||++.|.|.+++++.. + |+
T Consensus 6 prtlyvgnld~~vte-~~i~~lf~qig~v~~~k~i~~--------------------------e--------------~~ 44 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTE-DFIATLFNQIGSVTKTKVIFD--------------------------E--------------LK 44 (321)
T ss_pred CceEEeeccChhhHH-HHHHHHHHhccccccceeehh--------------------------h--------------hc
Confidence 489999999999998 899999999999999877642 1 22
Q ss_pred EEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019429 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 164 (341)
Q Consensus 85 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 164 (341)
|.++.......+ ...++.++|+|+.|...|+-|+|++.|.+||+
T Consensus 45 v~wa~~p~nQsk------------------------------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGe 88 (321)
T KOG0148|consen 45 VNWATAPGNQSK------------------------------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGE 88 (321)
T ss_pred cccccCcccCCC------------------------------------CccccceeEEehhcchhcchHHHHHHhccccc
Confidence 333321100000 00144678899999999999999999999999
Q ss_pred eeEEEEEc-----CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 165 VQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 165 v~~v~i~~-----~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|.+.+|++ |++|+ |||.|-+.++|+.||+.|||+.|.++ .||..||..+.
T Consensus 89 vS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~MnGqWlG~R---~IRTNWATRKp 143 (321)
T KOG0148|consen 89 VSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQMNGQWLGRR---TIRTNWATRKP 143 (321)
T ss_pred cccceEeecccCCcccce-eEEeccchHHHHHHHHHhCCeeeccc---eeeccccccCc
Confidence 99999875 34676 99999999999999999999999999 99999996553
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=4.8e-16 Score=150.22 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=126.4
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
|+.++--|....+. .+|.++|+.+|+|.+|+++. +.+++.|||||.|.++...|| .|.|+. +-|-
T Consensus 180 Rtvf~~qla~r~~p-RdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr---------llg~ 248 (549)
T KOG0147|consen 180 RTVFCMQLARRNPP-RDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR---------LLGV 248 (549)
T ss_pred HHHHHHHHhhcCCc-hhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc---------ccCc
Confidence 45555566655665 79999999999999997775 345668999999999999999 799988 4699
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
+|.|+.+........... .+ +.+.....+- ..++|+||-.++|+++|+.+|+.
T Consensus 249 pv~vq~sEaeknr~a~~s---------------~a----------~~~k~~~~p~--~rl~vgnLHfNite~~lr~ifep 301 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANAS---------------PA----------LQGKGFTGPM--RRLYVGNLHFNITEDMLRGIFEP 301 (549)
T ss_pred eeEecccHHHHHHHHhcc---------------cc----------ccccccccch--hhhhhcccccCchHHHHhhhccC
Confidence 999987663211110000 00 0000000011 11459999999999999999999
Q ss_pred cCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 162 FGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 162 fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
||+|+.|.+..+ .+|| |||+|.+.++|.+|++.|||.+|-|+ .|+|....
T Consensus 302 fg~Ie~v~l~~d~~tG~skgf-Gfi~f~~~~~ar~a~e~lngfelAGr---~ikV~~v~ 356 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRSKGF-GFITFVNKEDARKALEQLNGFELAGR---LIKVSVVT 356 (549)
T ss_pred cccceeeeeccccccccccCc-ceEEEecHHHHHHHHHHhccceecCc---eEEEEEee
Confidence 999999987644 2577 99999999999999999999999999 89887653
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=4.5e-15 Score=147.12 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=133.2
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
+.|.++|||..+.. ++|..+|..||+|.+|++.+ .|..|.|+|.+..+|.+|.+.|....+ ...++++
T Consensus 386 ~vil~kNlpa~t~~-~elt~~F~~fG~i~rvllp~--~G~~aiv~fl~p~eAr~Afrklaysr~---------k~~plyl 453 (725)
T KOG0110|consen 386 TVILVKNLPAGTLS-EELTEAFLRFGEIGRVLLPP--GGTGAIVEFLNPLEARKAFRKLAYSRF---------KSAPLYL 453 (725)
T ss_pred ceeeeccCcccccc-HHHHHHhhcccccceeecCc--ccceeeeeecCccchHHHHHHhchhhh---------ccCcccc
Confidence 78999999999999 68999999999999996653 455699999999999999999998874 5778888
Q ss_pred EeccCCcccccccCccCcCCCCCC-------CCCCCCccCccC----CCcc--cCC-CCCCCCCCcEEEEEeecCCCCCC
Q 019429 86 TYSAHTDLSVKFQSHRSRDYTNPY-------LPVAPSAIDASG----QLSV--GLD-GKKLEPESNVLLASIENMQYAVT 151 (341)
Q Consensus 86 ~~s~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~--~~~-~~~~~~~s~vl~v~v~nl~~~vt 151 (341)
.|+-.....-. .++.+++.-. .....++.++.. .++. ... ........+.|+ |.||....|
T Consensus 454 e~aP~dvf~~~---pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lf--vkNlnf~Tt 528 (725)
T KOG0110|consen 454 EWAPEDVFTED---PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLF--VKNLNFDTT 528 (725)
T ss_pred ccChhhhccCC---ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhh--hhcCCcccc
Confidence 87653322100 0111111000 000000000000 0000 000 000111122255 999999999
Q ss_pred HHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 152 LDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 152 ~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
.+.|..+|+..|.|..+.|-.++ -|| |||+|.+.++|..|+++|+|+.|.|. .|.|+++.
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH---~l~lk~S~ 596 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH---KLELKISE 596 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc---eEEEEecc
Confidence 99999999999999999886543 277 99999999999999999999999999 99999997
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.62 E-value=1.3e-15 Score=142.08 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=127.5
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.-|+|..|+|++++ |.|++.|+.||+|.++++++ +.+++++||+|.+.+...+++..-.- . +.++
T Consensus 7 ~KlfiGgisw~tte-e~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h-~---------~dgr 75 (311)
T KOG4205|consen 7 GKLFIGGLSWETTE-ESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH-K---------LDGR 75 (311)
T ss_pred cceeecCcCccccH-HHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc-c---------cCCc
Confidence 46899999999999 78999999999999999998 33445799999999999988863222 2 4577
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
.|.+..+..++...+. .....++.|+|+.|+..+++++|++.|++
T Consensus 76 ~ve~k~av~r~~~~~~-----------------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~ 120 (311)
T KOG4205|consen 76 SVEPKRAVSREDQTKV-----------------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQ 120 (311)
T ss_pred cccceeccCccccccc-----------------------------------ccccceeEEEecCcCCCCchHHHhhhhhc
Confidence 7777766544322110 00123445669999999999999999999
Q ss_pred cCCeeEEEEEc-----CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCcc
Q 019429 162 FGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 221 (341)
Q Consensus 162 fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~ 221 (341)
||.|..+.+.- +.+|| +||.|.+.++..+++. ...+.|.++ .+.|.-|-+++...
T Consensus 121 ~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk---~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 121 FGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK---KVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeEeeEEeecccccccccc-eeeEeccccccceecc-cceeeecCc---eeeEeeccchhhcc
Confidence 99999888643 23677 9999999999888875 678889999 88888887776543
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=4.1e-15 Score=143.82 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=132.7
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+.|+++||=+.+++ ++|+.+|++||.|..|.+.+ +..++|+||+|.+.|+|.+|++.|||.+ +.|+
T Consensus 279 ~rl~vgnLHfNite-~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe---------lAGr 348 (549)
T KOG0147|consen 279 RRLYVGNLHFNITE-DMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE---------LAGR 348 (549)
T ss_pred hhhhhcccccCchH-HHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce---------ecCc
Confidence 44899999999999 89999999999999998776 3355679999999999999999999977 5799
Q ss_pred eEEEEeccCC-cccccccCccCcCC-CCCCC----------------------CCCC-CccCc--cCCCcccCC------
Q 019429 82 TLRITYSAHT-DLSVKFQSHRSRDY-TNPYL----------------------PVAP-SAIDA--SGQLSVGLD------ 128 (341)
Q Consensus 82 ~i~v~~s~~~-~l~~~~~~~~~~~~-~~~~~----------------------~~~~-~~~~~--~~~~~~~~~------ 128 (341)
.|+|..-..+ +...........|. ..-.+ ++.. ++... ..+..+...
T Consensus 349 ~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (549)
T KOG0147|consen 349 LIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVR 428 (549)
T ss_pred eEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCcc
Confidence 9998754422 11100000000000 00000 0000 00000 000000000
Q ss_pred -------CCCCCCCCcEEEEEeecCCCCC--C--------HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHH
Q 019429 129 -------GKKLEPESNVLLASIENMQYAV--T--------LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 191 (341)
Q Consensus 129 -------~~~~~~~s~vl~v~v~nl~~~v--t--------~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~ 191 (341)
......++++++ +.|+-..- | .|++.+.+++||+|..|.+-+.+-|+ .||.|.+.+.|.+
T Consensus 429 ~~~p~~~~p~~~i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~-VYvrc~s~~~A~~ 505 (549)
T KOG0147|consen 429 SVDPADASPAFDIPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGC-VYVRCPSAEAAGT 505 (549)
T ss_pred ccCccccccccCCccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCce-EEEecCcHHHHHH
Confidence 011124567777 66764322 2 34677778999999998887666565 9999999999999
Q ss_pred HHHHhcCceeCCCCcceEEEEeecCCCCc
Q 019429 192 AKEALEGHCIYDGGFCKLHISYSRHTDLS 220 (341)
Q Consensus 192 Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~ 220 (341)
|+.+|||..+.|+ .|+++|-......
T Consensus 506 a~~alhgrWF~gr---~Ita~~~~~~~Y~ 531 (549)
T KOG0147|consen 506 AVKALHGRWFAGR---MITAKYLPLERYH 531 (549)
T ss_pred HHHHHhhhhhccc---eeEEEEeehhhhh
Confidence 9999999999999 9999997655443
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.6e-14 Score=122.16 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=123.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecC-CceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTA-GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~-g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.|+|++.|||-++.+ .||.+||.+||.|.+|.+..+.. -.||||||++..+|+.||..-||..+ .|+.|
T Consensus 6 ~~~iyvGNLP~diRe-keieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy---------dg~rL 75 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIRE-KEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---------DGCRL 75 (241)
T ss_pred cceEEecCCCcchhh-ccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc---------CcceE
Confidence 478999999999999 78999999999999998765322 34799999999999999999999884 69999
Q ss_pred EEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019429 84 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 163 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 163 (341)
+|+|..--.-. +.+.-.|..-.. + +...-+..+. ..-.....|.|..||.+-++++|++....-|
T Consensus 76 RVEfprggr~s----~~~~G~y~gggr--------g-Ggg~gg~rgp--psrrSe~RVvVsGLp~SgSWQDLKDHmReaG 140 (241)
T KOG0105|consen 76 RVEFPRGGRSS----SDRRGSYSGGGR--------G-GGGGGGRRGP--PSRRSEYRVVVSGLPPSGSWQDLKDHMREAG 140 (241)
T ss_pred EEEeccCCCcc----cccccccCCCCC--------C-CCCCCcccCC--cccccceeEEEecCCCCCchHHHHHHHHhhC
Confidence 99998733210 001001110000 0 0000000000 0011224455899999999999999999999
Q ss_pred CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 164 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 164 ~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
+|.-..+.++ | .+.|+|...|+-+.|+.+|+.+.+..
T Consensus 141 dvCfadv~rD--g-~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 141 DVCFADVQRD--G-VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred Ceeeeeeecc--c-ceeeeeeehhhHHHHHHhhccccccC
Confidence 9988777764 4 49999999999999999999887654
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4e-15 Score=131.06 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=122.3
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
.++|.+|||.+.+ .+|..||..||.|.+|.+. .+ ++||+|.|..+|..||..||++.+ .+..+.|.
T Consensus 3 rv~vg~~~~~~~~-~d~E~~f~~yg~~~d~~mk---~g-f~fv~fed~rda~Dav~~l~~~~l---------~~e~~vve 68 (216)
T KOG0106|consen 3 RVYIGRLPYRARE-RDVERFFKGYGKIPDADMK---NG-FGFVEFEDPRDADDAVHDLDGKEL---------CGERLVVE 68 (216)
T ss_pred ceeecccCCccch-hHHHHHHhhccccccceee---cc-cceeccCchhhhhcccchhcCcee---------cceeeeee
Confidence 5789999999999 7999999999999999875 34 599999999999999999999985 45558888
Q ss_pred eccCCcccccc---cCccC--cCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 87 YSAHTDLSVKF---QSHRS--RDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 87 ~s~~~~l~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
++....-.... ...+. +++.. ......+++ +.|+...+++.+|.+.|++
T Consensus 69 ~~r~~~~~~g~~~~g~r~~~~~~~~~------------------------p~~s~~r~~--~~~~~~r~~~qdl~d~~~~ 122 (216)
T KOG0106|consen 69 HARGKRRGRGRPRGGDRRSDSRRYRP------------------------PSRTHFRLI--VRNLSLRVSWQDLKDHFRP 122 (216)
T ss_pred cccccccccCCCCCCCccchhhccCC------------------------cccccceee--eccchhhhhHHHHhhhhcc
Confidence 87733111100 00000 00000 011244555 8899999999999999999
Q ss_pred cCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 162 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 162 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
+|.++.+++ ..++ +||+|++.++|.+|++.|+|.++.++ .|++..
T Consensus 123 ~g~~~~~~~---~~~~-~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~~ 167 (216)
T KOG0106|consen 123 AGEVTYVDA---RRNF-AFVEFSEQEDAKRALEKLDGKKLNGR---RISVEK 167 (216)
T ss_pred cCCCchhhh---hccc-cceeehhhhhhhhcchhccchhhcCc---eeeecc
Confidence 999966555 3344 99999999999999999999999988 898843
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=7.1e-15 Score=123.64 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=67.3
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+.|+|+||++++++ ++|+++|++||+|.+|.+.+ ..++++|||+|.+.|+|++|++.||+..| .++
T Consensus 35 ~~lfVgnL~~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---------~Gr 104 (144)
T PLN03134 35 TKLFIGGLSWGTDD-ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---------NGR 104 (144)
T ss_pred CEEEEeCCCCCCCH-HHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence 56999999999987 79999999999999998775 23456899999999999999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|++++.+
T Consensus 105 ~l~V~~a~~~ 114 (144)
T PLN03134 105 HIRVNPANDR 114 (144)
T ss_pred EEEEEeCCcC
Confidence 9999998754
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=4.2e-14 Score=118.95 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=67.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |.||+..+|+++|+++|++||.|++|+|..+ .+|+ |||+|++.++|++|++.||+..|.++ .|+
T Consensus 34 ~~~lf--VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGf-aFV~F~~~e~A~~Al~~lng~~i~Gr---~l~ 107 (144)
T PLN03134 34 STKLF--IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF-GFVNFNDEGAATAAISEMDGKELNGR---HIR 107 (144)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence 45555 9999999999999999999999999998643 3576 99999999999999999999999999 999
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
|++++.+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998654
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=9.2e-13 Score=124.24 Aligned_cols=195 Identities=20% Similarity=0.270 Sum_probs=130.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhc-cCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSA-FGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~-fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|..||.|||||..+ .+|++||.+ .|+|.-|.++- .+.+++|.|||++.|.+++|++.||-.+ ++|
T Consensus 44 ~R~vfItNIpyd~rW-qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~---------~~G 113 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRW-QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE---------VNG 113 (608)
T ss_pred cceEEEecCcchhhh-HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc---------ccC
Confidence 578999999999999 789999977 59999885554 3455679999999999999999999988 589
Q ss_pred ceEEEEeccCCc------cccc----------cc-------------CccCcCCCCC--CCCCC-------CCccCccCC
Q 019429 81 CTLRITYSAHTD------LSVK----------FQ-------------SHRSRDYTNP--YLPVA-------PSAIDASGQ 122 (341)
Q Consensus 81 ~~i~v~~s~~~~------l~~~----------~~-------------~~~~~~~~~~--~~~~~-------~~~~~~~~~ 122 (341)
|+|.|.-....+ +... .+ ..+.|.+..- +..+. ...+....+
T Consensus 114 R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~ 193 (608)
T KOG4212|consen 114 RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSN 193 (608)
T ss_pred ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchh
Confidence 999997543210 0000 00 0000000000 00000 000000000
Q ss_pred -----CcccCCC--CCCC-CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc----CCCCeEEEEEcCChhHHH
Q 019429 123 -----LSVGLDG--KKLE-PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAV 190 (341)
Q Consensus 123 -----~~~~~~~--~~~~-~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~ 190 (341)
....+.. .... +....+| |.||.+.|..+.|++.|.--|+|+.|.+-- .++|+ +.|+|+.+-+|.
T Consensus 194 ~~lfgl~~~Flr~~h~f~pPl~~k~f--vanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~-~vi~y~hpveav 270 (608)
T KOG4212|consen 194 YNLFGLSASFLRSLHIFSPPLHNKVF--VANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF-AVIEYDHPVEAV 270 (608)
T ss_pred hhcccchhhhhhhccCCCCCccceee--eeccccccchHHHHHHhccceeeeeeceeeccccccCCe-eEEEecchHHHH
Confidence 0001111 1112 2234444 899999999999999999999999987532 23676 999999999999
Q ss_pred HHHHHhcCceeCCCCcceEEEEeec
Q 019429 191 VAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 191 ~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
.||..|++.-+++. ++.+.+.+
T Consensus 271 qaIsml~~~g~~~~---~~~~Rl~~ 292 (608)
T KOG4212|consen 271 QAISMLDRQGLFDR---RMTVRLDR 292 (608)
T ss_pred HHHHhhccCCCccc---cceeeccc
Confidence 99999999888887 77777643
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=4.6e-14 Score=102.94 Aligned_cols=67 Identities=27% Similarity=0.362 Sum_probs=59.4
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
|+|+|||+++++ ++|+++|+.||.|..+.+... ...++|||+|.+.++|++|++.|||..+ .|++|+
T Consensus 1 l~v~nlp~~~t~-~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---------~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTE-EELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---------NGRKIR 70 (70)
T ss_dssp EEEESETTTSSH-HHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred cEEcCCCCcCCH-HHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---------CccCcC
Confidence 689999999999 799999999999999988773 3445799999999999999999999885 688775
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=2.2e-13 Score=99.32 Aligned_cols=66 Identities=27% Similarity=0.419 Sum_probs=59.2
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
|+|+|||..+|+++|+++|+.||.|..+.+..+ ..++ |||+|++.++|.+|++.|||..+.++ .|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~-a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGY-AFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccce-EEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 569999999999999999999999999998764 2344 99999999999999999999999987 664
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.4e-13 Score=106.00 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=70.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
-|-|+|+|||+++|+ |+..+||.+||.|..|++-. +..++.|||.|++.++|++|++.|+|.. +.++-+
T Consensus 18 nriLyirNLp~~ITs-eemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n---------~~~ryl 87 (124)
T KOG0114|consen 18 NRILYIRNLPFKITS-EEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN---------VDNRYL 87 (124)
T ss_pred heeEEEecCCccccH-HHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc---------cCCceE
Confidence 477999999999999 68999999999999998765 3344569999999999999999999988 469999
Q ss_pred EEEeccCCcccc
Q 019429 84 RITYSAHTDLSV 95 (341)
Q Consensus 84 ~v~~s~~~~l~~ 95 (341)
.|-|.++.+...
T Consensus 88 ~vlyyq~~~~~~ 99 (124)
T KOG0114|consen 88 VVLYYQPEDAFK 99 (124)
T ss_pred EEEecCHHHHHH
Confidence 999988665443
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.43 E-value=3.5e-12 Score=117.41 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=123.0
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcce--------EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCC
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVH--------KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 75 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~--------~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~ 75 (341)
.++|+|||.++|. +++.++|+.||-|. +|.+.+ +.-++-|+|.|-..|+...|++.|++..
T Consensus 136 ~VYVsgLP~DiT~-dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~------- 207 (382)
T KOG1548|consen 136 SVYVSGLPLDITV-DEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE------- 207 (382)
T ss_pred eEEecCCCCcccH-HHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-------
Confidence 4899999999999 68999999999984 456666 2233459999999999999999999988
Q ss_pred CCCCCceEEEEeccCC---cccc--cc------------cCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcE
Q 019429 76 ENMGPCTLRITYSAHT---DLSV--KF------------QSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 138 (341)
Q Consensus 76 ~~~~g~~i~v~~s~~~---~l~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v 138 (341)
++|+.|+|+.++-. +... +. ...+.++|..-. .. .... ...++
T Consensus 208 --~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~--~~---------------~sk~-r~~~t 267 (382)
T KOG1548|consen 208 --LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR--DD---------------PSKA-RADRT 267 (382)
T ss_pred --ccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc--cc---------------cccc-cCCcE
Confidence 47999999988722 1100 00 011111221100 00 0000 11223
Q ss_pred EEEEeecCCC----CCC-------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 139 LLASIENMQY----AVT-------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 139 l~v~v~nl~~----~vt-------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
+. +.|+-. .-+ .++|.+-+++||.|.+|+++.+. .|. +-|.|.+.++|..||+.|+|..+.|+
T Consensus 268 Vi--~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGv-vtV~f~n~eeA~~ciq~m~GR~fdgR-- 342 (382)
T KOG1548|consen 268 VI--LKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGV-VTVSFRNNEEADQCIQTMDGRWFDGR-- 342 (382)
T ss_pred EE--eeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCce-eEEEeCChHHHHHHHHHhcCeeecce--
Confidence 22 555532 223 34567779999999999998654 565 99999999999999999999999999
Q ss_pred ceEEEEeecC
Q 019429 207 CKLHISYSRH 216 (341)
Q Consensus 207 ~~l~v~~s~~ 216 (341)
.|..+....
T Consensus 343 -ql~A~i~DG 351 (382)
T KOG1548|consen 343 -QLTASIWDG 351 (382)
T ss_pred -EEEEEEeCC
Confidence 888876643
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.6e-13 Score=112.52 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=69.5
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 140 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
.|||+||+..+++.+|..+|+.||.|.+|.|-....|| |||||+|+.+|..|+..|+|..|.|. .|+|++++-..
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf-AFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~~ 86 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF-AFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGRP 86 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc-eEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCCc
Confidence 37899999999999999999999999999987777788 99999999999999999999999998 99999986543
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=7.9e-13 Score=92.87 Aligned_cols=56 Identities=38% Similarity=0.611 Sum_probs=51.3
Q ss_pred HHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 155 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 155 L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
|+++|++||+|++|.+..++++ +|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~-~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG-FAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT-EEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 7899999999999999987745 499999999999999999999999998 9999996
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.41 E-value=3.5e-12 Score=122.27 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=110.8
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
+-+|-|||+||+ +||+++|+.+ .|.++++.+ +.++ -|||||.++|++++|++ .|-.. +..+=|.
T Consensus 13 vr~rGLPwsat~-~ei~~Ff~~~-~I~~~~~~r~~Gr~sG-eA~Ve~~seedv~~Alk-kdR~~---------mg~RYIE 79 (510)
T KOG4211|consen 13 VRLRGLPWSATE-KEILDFFSNC-GIENLEIPRRNGRPSG-EAYVEFTSEEDVEKALK-KDRES---------MGHRYIE 79 (510)
T ss_pred EEecCCCccccH-HHHHHHHhcC-ceeEEEEeccCCCcCc-ceEEEeechHHHHHHHH-hhHHH---------hCCceEE
Confidence 345789999999 7899999999 467776666 3344 49999999999999997 44434 4677888
Q ss_pred EEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019429 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 164 (341)
Q Consensus 85 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 164 (341)
|.-+...+... .+.. . +........|+. +..||+.||+++|.++|+---.
T Consensus 80 Vf~~~~~e~d~--------~~~~-~-------------------g~~s~~~d~vVR--LRGLPfscte~dI~~FFaGL~I 129 (510)
T KOG4211|consen 80 VFTAGGAEADW--------VMRP-G-------------------GPNSSANDGVVR--LRGLPFSCTEEDIVEFFAGLEI 129 (510)
T ss_pred EEccCCccccc--------cccC-C-------------------CCCCCCCCceEE--ecCCCccCcHHHHHHHhcCCcc
Confidence 88766543311 0000 0 000001234444 8999999999999999998766
Q ss_pred eeEEE-EEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 165 VQKIA-MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 165 v~~v~-i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|.+.. ++.. ..| -|||+|++.+.|++|+.. |...|..+ -|.|--|.
T Consensus 130 v~~gi~l~~d~rgR~tG-EAfVqF~sqe~ae~Al~r-hre~iGhR---YIEvF~Ss 180 (510)
T KOG4211|consen 130 VPDGILLPMDQRGRPTG-EAFVQFESQESAEIALGR-HRENIGHR---YIEVFRSS 180 (510)
T ss_pred cccceeeeccCCCCccc-ceEEEecCHHHHHHHHHH-HHHhhccc---eEEeehhH
Confidence 66622 2222 234 499999999999999975 66667777 77775543
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=8.5e-13 Score=92.70 Aligned_cols=56 Identities=36% Similarity=0.542 Sum_probs=50.0
Q ss_pred HHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEec
Q 019429 23 RAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 88 (341)
Q Consensus 23 L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s 88 (341)
|+++|++||+|.+|.+.+++ +++|||+|.+.++|++|++.|||..+ .|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~---------~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQF---------NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEE---------TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEC
Confidence 78999999999999998755 45799999999999999999999985 6999999986
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.6e-12 Score=124.37 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=69.3
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
...++|+ |.||++++|+++|+++|+.||+|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ +
T Consensus 105 ~~~~~Lf--VgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGy-aFVeF~~~e~A~~Ai~~LnG~~l~gr---~ 178 (346)
T TIGR01659 105 NSGTNLI--VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGY-AFVDFGSEADSQRAIKNLNGITVRNK---R 178 (346)
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcE-EEEEEccHHHHHHHHHHcCCCccCCc---e
Confidence 3456666 9999999999999999999999999998653 2476 99999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 019429 209 LHISYSRHT 217 (341)
Q Consensus 209 l~v~~s~~~ 217 (341)
|+|+|+++.
T Consensus 179 i~V~~a~p~ 187 (346)
T TIGR01659 179 LKVSYARPG 187 (346)
T ss_pred eeeeccccc
Confidence 999998653
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6.2e-13 Score=121.48 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=68.2
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~--~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
-++|+|+|||+.-.| -||+.+|++||+|++|.|+- +-+|+|+||+|++.++|++|-++|||..| .||+
T Consensus 96 pkRLhVSNIPFrFRd-pDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V---------EGRk 165 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRD-PDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV---------EGRK 165 (376)
T ss_pred CceeEeecCCccccC-ccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee---------eceE
Confidence 478999999999999 79999999999999995553 44556799999999999999999999995 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|.|..+..+
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 999988755
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=118.41 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=65.4
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~-~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
|+|+|+||++++++ ++|+++|+.||+|.+|.|.+. ..+++|||+|.+.++|++|+. |||..| .|+.|+
T Consensus 5 rtVfVgNLs~~tTE-~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l---------~gr~V~ 73 (260)
T PLN03120 5 RTVKVSNVSLKATE-RDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATI---------VDQSVT 73 (260)
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCee---------CCceEE
Confidence 78999999999887 799999999999999988763 245579999999999999995 999985 699999
Q ss_pred EEeccC
Q 019429 85 ITYSAH 90 (341)
Q Consensus 85 v~~s~~ 90 (341)
|..+..
T Consensus 74 Vt~a~~ 79 (260)
T PLN03120 74 ITPAED 79 (260)
T ss_pred EEeccC
Confidence 998763
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.9e-12 Score=112.95 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=69.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+..+. |.||+.++++++|.+||.+||.|.+|.+-..+ +|| |||.|.++++|.+||+.|||+-.++- .|
T Consensus 188 D~~tvR--vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---IL 261 (270)
T KOG0122|consen 188 DEATVR--VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---IL 261 (270)
T ss_pred ccceeE--EecCccccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---EE
Confidence 455666 88999999999999999999999999986543 688 99999999999999999999998887 99
Q ss_pred EEEeecCC
Q 019429 210 HISYSRHT 217 (341)
Q Consensus 210 ~v~~s~~~ 217 (341)
+|+||+++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=1.7e-10 Score=115.83 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=67.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
-|+|||+-|+..+++ .||+++|++||+|.+|.++. .+++|||.|....+|.+|+..|++.. +.++.|+
T Consensus 421 SrTLwvG~i~k~v~e-~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~k---------v~~k~Ik 488 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTE-QDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVK---------VADKTIK 488 (894)
T ss_pred eeeeeeccccchhhH-HHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhccc---------ccceeeE
Confidence 489999999999999 79999999999999998876 44579999999999999999999887 4799999
Q ss_pred EEeccCC
Q 019429 85 ITYSAHT 91 (341)
Q Consensus 85 v~~s~~~ 91 (341)
|.|+..+
T Consensus 489 i~Wa~g~ 495 (894)
T KOG0132|consen 489 IAWAVGK 495 (894)
T ss_pred EeeeccC
Confidence 9998855
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=1.8e-12 Score=95.04 Aligned_cols=67 Identities=28% Similarity=0.340 Sum_probs=56.6
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~---~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
|+|+|||+.+++ ++|+++|+.||.|.+|.+.+.+ .+++|||+|.+.++|++|++.++|..| +|+.|+
T Consensus 1 v~i~nlp~~~~~-~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---------~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTE-EDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---------DGRKLR 70 (70)
T ss_dssp EEEESSTTT--H-HHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred CEEeCCCCCCCH-HHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---------CCEEcC
Confidence 689999999877 7999999999999999888742 245799999999999999999998874 688774
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=5.9e-12 Score=97.06 Aligned_cols=77 Identities=23% Similarity=0.432 Sum_probs=68.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
+++|+ |.|||+.+|.|+..++|.+||.|..|+|...+ +|. |||.|+|..+|.+|++.|+|+.+.++ .|.|-|
T Consensus 18 nriLy--irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGT-AFVVYedi~dAk~A~dhlsg~n~~~r---yl~vly 91 (124)
T KOG0114|consen 18 NRILY--IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGT-AFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLY 91 (124)
T ss_pred heeEE--EecCCccccHHHHHHHhhcccceEEEEecCccCcCce-EEEEehHhhhHHHHHHHhcccccCCc---eEEEEe
Confidence 56666 99999999999999999999999999997543 675 99999999999999999999999999 999988
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
-.+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 65443
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=112.10 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=98.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.++|+|+|||+++++ ++|+++|+.||.|..|.+.. +..+++|||+|.+.++|..|++.|+|..| .|
T Consensus 115 ~~~l~v~nL~~~~~~-~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---------~~ 184 (306)
T COG0724 115 NNTLFVGNLPYDVTE-EDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---------EG 184 (306)
T ss_pred CceEEEeCCCCCCCH-HHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---------CC
Confidence 588999999999999 79999999999998887665 24556799999999999999999999884 69
Q ss_pred ceEEEEeccC-CcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 81 CTLRITYSAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 81 ~~i~v~~s~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
+.|+|.++.. ..............+.. .. .............+ ++.+++..++.+++...|
T Consensus 185 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 246 (306)
T COG0724 185 RPLRVQKAQPASQPRSELSNNLDASFAK-KL---------------SRGKALLLEKSDNL--YVGNLPLKTAEEELADLF 246 (306)
T ss_pred ceeEeeccccccccccccccccchhhhc-cc---------------ccccccccccccee--eccccccccchhHHHHhc
Confidence 9999998653 10000000000000000 00 00000001123334 488999999999999999
Q ss_pred cccCCeeEEEEEcCC
Q 019429 160 SAFGPVQKIAMFDKN 174 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~ 174 (341)
..+|.+..+.+....
T Consensus 247 ~~~~~~~~~~~~~~~ 261 (306)
T COG0724 247 KSRGDIVRASLPPSK 261 (306)
T ss_pred cccccceeeeccCCC
Confidence 999999777765433
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.2e-11 Score=110.28 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=62.5
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
++++..+-.|.++ +||+.+|+.||+|++|.+-+ +..++|+||||.+..+-..||..||-.. ++|.-
T Consensus 212 RiYVaSvHpDLSe-~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD---------LGGQy 281 (544)
T KOG0124|consen 212 RIYVASVHPDLSE-TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGGQY 281 (544)
T ss_pred eEEeeecCCCccH-HHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh---------cccce
Confidence 4677777777777 79999999999999999887 4456789999999999999999999766 68999
Q ss_pred EEEEecc
Q 019429 83 LRITYSA 89 (341)
Q Consensus 83 i~v~~s~ 89 (341)
|||..+-
T Consensus 282 LRVGk~v 288 (544)
T KOG0124|consen 282 LRVGKCV 288 (544)
T ss_pred Eeccccc
Confidence 9998764
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.6e-12 Score=107.19 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=67.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
+-++|.||+..+++ .||+.+|..||.|.+|.|.+...+ ||||||+|..+|+.|+.+|||+.| .|..|+|
T Consensus 11 ~kVYVGnL~~~a~k-~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~---------cG~r~rV 79 (195)
T KOG0107|consen 11 TKVYVGNLGSRATK-RELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDI---------CGSRIRV 79 (195)
T ss_pred ceEEeccCCCCcch-HHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccc---------cCceEEE
Confidence 45799999999999 799999999999999999886666 599999999999999999999995 6899999
Q ss_pred EeccCC
Q 019429 86 TYSAHT 91 (341)
Q Consensus 86 ~~s~~~ 91 (341)
++|+-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 998844
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.8e-12 Score=112.66 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=60.9
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
-+||.+|+|++++ |.|++.|++||+|++.+++. +++++|+||+|+|.|+|.+|++.-| .| +.||+
T Consensus 14 KifVggL~w~T~~-~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi--------IdGR~ 82 (247)
T KOG0149|consen 14 KIFVGGLAWETHK-ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI--------IDGRK 82 (247)
T ss_pred EEEEcCcccccch-HHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc--------ccccc
Confidence 4799999999999 78999999999999987775 4567799999999999999998444 44 67888
Q ss_pred EEEEecc
Q 019429 83 LRITYSA 89 (341)
Q Consensus 83 i~v~~s~ 89 (341)
..|..+.
T Consensus 83 aNcnlA~ 89 (247)
T KOG0149|consen 83 ANCNLAS 89 (247)
T ss_pred cccchhh
Confidence 8877655
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.2e-11 Score=111.93 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=64.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
|+|+||++.+|+++|+++|+.||+|++|+|...+ +|| |||+|.+.++|..|+. |||..|.++ .|+|+++..
T Consensus 7 VfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~Gf-AFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~a~~ 79 (260)
T PLN03120 7 VKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQI-AYVTFKDPQGAETALL-LSGATIVDQ---SVTITPAED 79 (260)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEeccC
Confidence 4599999999999999999999999999987643 576 9999999999999995 999999999 999998653
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=4.3e-12 Score=121.35 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=68.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCH--HHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDT--ETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~--e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
-+|||.||+|++++ ++|+.+|+.||.|.+|.|++.+.++||||+|.+. +++.+||+.|||.+ ++|+.|
T Consensus 11 MRIYVGNLSydVTE-DDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE---------WKGR~L 80 (759)
T PLN03213 11 VRLHVGGLGESVGR-DDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV---------WKGGRL 80 (759)
T ss_pred eEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe---------ecCcee
Confidence 47999999999999 7999999999999999888855567899999987 78999999999999 589999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|+.++..
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99998854
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=1.1e-11 Score=90.82 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=57.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
|+|.|||..+|+++|+++|+.||.|.+|.+...+ +|+ |||+|.+.++|.+|++.++|..+.|+ .|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~-a~v~f~~~~~a~~al~~~~~~~~~g~---~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGF-AFVEFSSEEDAKRALELLNGKEIDGR---KLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCE-EEEEeCCHHHHHHHHHHCCCcEECCE---EcC
Confidence 4699999999999999999999999999988754 354 99999999999999999999999988 664
No 69
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=119.82 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=126.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
|=.+++.+||.-.++ +.++++-+.||.+....+++ ..+++|||.||.+......|+..|||+.+ .+
T Consensus 289 ~~ki~v~~lp~~l~~-~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l---------gd 358 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTE-DQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---------GD 358 (500)
T ss_pred cchhhhccCcCccCH-HHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh---------cC
Confidence 446889999999988 78999999999999887776 35677899999999999999999999995 68
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHH-------
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD------- 153 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~------- 153 (341)
++|.|+.+-........+.. .+++.+.+. ... .-.....++.||. +.|+ ||.+
T Consensus 359 ~~lvvq~A~~g~~~~~~~~~-----------~~~~~~~~i--~~~--~~q~~g~~t~Vl~--L~n~---Vt~deLkdd~E 418 (500)
T KOG0120|consen 359 KKLVVQRAIVGASNANVNFN-----------ISQSQVPGI--PLL--MTQMAGIPTEVLC--LTNV---VTPDELKDDEE 418 (500)
T ss_pred ceeEeehhhccchhccccCC-----------ccccccccc--hhh--hcccCCCcchhhh--hhhc---CCHHHhcchHH
Confidence 99999877643222110000 000000000 000 0001112456665 4454 3333
Q ss_pred ------HHHHHHcccCCeeEEEEEcC-C-------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 154 ------VLHMVFSAFGPVQKIAMFDK-N-------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 154 ------~L~~~F~~fG~v~~v~i~~~-~-------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+++..|++||.|.+|.|... . -| ..||+|.+.+++++|.++|+|.++.++ ++..+|-....
T Consensus 419 yeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~G-kVFVefas~ed~qrA~~~L~GrKF~nR---tVvtsYydeDk 493 (500)
T KOG0120|consen 419 YEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTG-KVFVEFADTEDSQRAMEELTGRKFANR---TVVASYYDEDK 493 (500)
T ss_pred HHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcc-cEEEEecChHHHHHHHHHccCceeCCc---EEEEEecCHHH
Confidence 34557899999999998654 1 12 489999999999999999999999999 99999865443
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=8.7e-12 Score=99.70 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=64.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
|++|+ |+||...++||+|++||++.|+|.+|.|--++ =|| +||+|.+.++|..|++.++|+.|..+ +|+
T Consensus 36 S~tvy--VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGF-CFVeyy~~~dA~~AlryisgtrLddr---~ir 109 (153)
T KOG0121|consen 36 SCTVY--VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGF-CFVEYYSRDDAEDALRYISGTRLDDR---PIR 109 (153)
T ss_pred cceEE--EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccce-EEEEEecchhHHHHHHHhccCccccc---cee
Confidence 56655 99999999999999999999999999874222 356 99999999999999999999999999 999
Q ss_pred EEee
Q 019429 211 ISYS 214 (341)
Q Consensus 211 v~~s 214 (341)
|+|.
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9973
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2e-11 Score=88.15 Aligned_cols=70 Identities=27% Similarity=0.362 Sum_probs=60.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec--CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~--~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
+|+|+|||.++++ ++|+++|++||+|.++.+.... ..++|||+|.+.++|++|++.++|..| .++.|+
T Consensus 1 ~v~i~~l~~~~~~-~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---------~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTE-EDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL---------GGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCH-HHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE---------CCEEEe
Confidence 4789999999988 7999999999999999877632 345799999999999999999999874 588887
Q ss_pred EE
Q 019429 85 IT 86 (341)
Q Consensus 85 v~ 86 (341)
|+
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 63
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.4e-11 Score=108.62 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
++-|.||+.++++ ++|++||.+||.|.+|.+.+ +..++||||.|.+.|+|.+||+.|||.-+ ..-.
T Consensus 191 tvRvtNLsed~~E-~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---------d~LI 260 (270)
T KOG0122|consen 191 TVRVTNLSEDMRE-DDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---------DNLI 260 (270)
T ss_pred eeEEecCccccCh-hHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---------ceEE
Confidence 3789999999999 79999999999999998776 33556799999999999999999999874 4778
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|+||+++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999999865
No 73
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=2.2e-11 Score=87.51 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=57.8
Q ss_pred ccCCCCCCCCHHHHHHHhhccCcceEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 10 RKYLQWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 10 ~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
|+|||+++++ ++|+++|+.||.|.++.+.+.. ..++|||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 1 i~~l~~~~~~-~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---------~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTE-EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---------DGRPLKV 70 (71)
T ss_pred CCCCCcccCH-HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---------CCcEEEe
Confidence 6899999988 7999999999999999887633 245899999999999999999998874 6888876
Q ss_pred E
Q 019429 86 T 86 (341)
Q Consensus 86 ~ 86 (341)
+
T Consensus 71 ~ 71 (71)
T smart00360 71 K 71 (71)
T ss_pred C
Confidence 3
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.8e-11 Score=115.90 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=69.3
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCCh--hHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 138 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 138 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~--~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
...|||+||.+.||+++|+.+|+.||.|.+|.|++.+ +|| |||+|.+. .++.+||+.|||..+.|+ .|+|.-|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGF-AFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCce-EEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeec
Confidence 3557799999999999999999999999999988543 788 99999987 789999999999999999 9999999
Q ss_pred cCC
Q 019429 215 RHT 217 (341)
Q Consensus 215 ~~~ 217 (341)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 866
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.23 E-value=7.6e-12 Score=107.76 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|-|-||.|.++. ++|+.+|++||.|-+|.|.+ +..++||||.|.++.+|+.|++.|+|.. +.|+.
T Consensus 15 SLkVdNLTyRTsp-d~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~---------ldgRe 84 (256)
T KOG4207|consen 15 SLKVDNLTYRTSP-DDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV---------LDGRE 84 (256)
T ss_pred eEEecceeccCCH-HHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee---------eccce
Confidence 5789999999999 79999999999999999887 4455679999999999999999999998 46999
Q ss_pred EEEEeccC
Q 019429 83 LRITYSAH 90 (341)
Q Consensus 83 i~v~~s~~ 90 (341)
|+|++++-
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999883
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=2.6e-11 Score=108.10 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=65.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
..++++|+||++++|+ ++|+++|+.||+|.+|.|.+ +..+++|||+|.+.++|+.|+ .|||..| .++.
T Consensus 4 ~g~TV~V~NLS~~tTE-~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l---------~d~~ 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATE-KDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI---------VDQR 72 (243)
T ss_pred CceEEEEecCCCCCCH-HHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee---------CCce
Confidence 4578999999999999 79999999999999998887 334457999999999999999 6999995 5888
Q ss_pred EEEEecc
Q 019429 83 LRITYSA 89 (341)
Q Consensus 83 i~v~~s~ 89 (341)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9988655
No 77
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=8.4e-11 Score=84.81 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=60.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
|+|.|++..+++++|+++|+.||.|.++.+.... .|+ |||+|.+.++|.+|++.|+|..+.++ .|+|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGF-AFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCce-EEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 4599999999999999999999999999887654 455 99999999999999999999999887 7776
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.19 E-value=2.3e-11 Score=104.79 Aligned_cols=74 Identities=23% Similarity=0.436 Sum_probs=67.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|.|.||.+-+|.|+|+.+|++||.|-+|.|..+ .+|| |||.|.+..+|+.|+++|+|..|+|+ .|+|++++
T Consensus 16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrVq~ar 91 (256)
T KOG4207|consen 16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQMAR 91 (256)
T ss_pred EEecceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeeehhhh
Confidence 449999999999999999999999999999754 3788 99999999999999999999999999 99999987
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
-..
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 543
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=7e-11 Score=108.19 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=67.3
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-c--CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-D--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~--~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
..|+|.|+|..--|-||+.+|++||+|.+|+|+ + .++|| |||.|++.++|++|-++|||..|.|+ +|+|..+.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~AT 172 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNNAT 172 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEeccc
Confidence 345599999999999999999999999999964 3 34688 99999999999999999999999999 99999986
Q ss_pred CC
Q 019429 216 HT 217 (341)
Q Consensus 216 ~~ 217 (341)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 55
No 80
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-11 Score=106.70 Aligned_cols=79 Identities=18% Similarity=0.420 Sum_probs=71.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.++|. |+.|..+||+..|+..|-+||.|+.|.|.- +.+|| |||+|+..|+|..||..||+.+|+|+ +|+
T Consensus 10 KrtlY--VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---tir 83 (298)
T KOG0111|consen 10 KRTLY--VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---TIR 83 (298)
T ss_pred ceeEE--eccchHHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---eEE
Confidence 44554 999999999999999999999999999863 44888 99999999999999999999999999 999
Q ss_pred EEeecCCCCc
Q 019429 211 ISYSRHTDLS 220 (341)
Q Consensus 211 v~~s~~~~~~ 220 (341)
|.|+++...+
T Consensus 84 VN~AkP~kik 93 (298)
T KOG0111|consen 84 VNLAKPEKIK 93 (298)
T ss_pred EeecCCcccc
Confidence 9999987654
No 81
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=1.1e-09 Score=110.17 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=69.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|++|+ |+.++..|++.+|.++|+.||+|++|.+....+ ||||.+..+.+|.+|+++|+++.+.++ .|+|.|+.
T Consensus 421 SrTLw--vG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLW--VGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAV 493 (894)
T ss_pred eeeee--eccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeeec
Confidence 67788 999999999999999999999999998776554 799999999999999999999999999 99999996
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
.+-
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 543
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=2.1e-10 Score=102.32 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=62.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|.||++.+|+++|+++|+.||+|.+|+|.+++ +++ |||+|.+.++|..|+ .|+|..|.++ .|.|.-..
T Consensus 8 V~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gf-AfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~~~ 79 (243)
T PLN03121 8 AEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACT-AYVTFKDAYALETAV-LLSGATIVDQ---RVCITRWG 79 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceE-EEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEeCc
Confidence 4499999999999999999999999999988654 345 999999999999999 6999999999 89888654
No 83
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.7e-11 Score=96.12 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=63.3
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+++|.||++-+++ |.|++||+.+|+|..|++-- +..-++|||+|-+.++|..|++++||.. +..++
T Consensus 38 tvyVgNlSfyttE-EqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr---------Lddr~ 107 (153)
T KOG0121|consen 38 TVYVGNLSFYTTE-EQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR---------LDDRP 107 (153)
T ss_pred eEEEeeeeeeecH-HHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc---------ccccc
Confidence 6899999998888 78999999999999987532 3444579999999999999999999998 46999
Q ss_pred EEEEecc
Q 019429 83 LRITYSA 89 (341)
Q Consensus 83 i~v~~s~ 89 (341)
|+|.|..
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999754
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.6e-10 Score=82.93 Aligned_cols=66 Identities=26% Similarity=0.449 Sum_probs=58.4
Q ss_pred eecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 143 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 143 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
|.|++..+++++|+++|+.||.|..+.+.... .|+ |||+|.+.++|..|++.|++..+.++ .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGF-AFVEFESEEDAEKALEALNGKELDGR---PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCce-EEEEeCCHHHHHHHHHHcCCCeeCCc---EEEeC
Confidence 46889999999999999999999999887643 355 99999999999999999999999888 77763
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=2.1e-10 Score=83.21 Aligned_cols=71 Identities=28% Similarity=0.419 Sum_probs=61.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~---~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
+|+|+|||+.+++ ++|+++|+.||.|.++.+.+.. ..++|||+|.+.++|..|++.+++..+ .++.|
T Consensus 1 ~i~i~~l~~~~~~-~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---------~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVTE-EDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---------GGRPL 70 (74)
T ss_pred CEEEeCCCCccCH-HHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence 4789999999888 7999999999999999888632 245799999999999999999999874 68888
Q ss_pred EEEe
Q 019429 84 RITY 87 (341)
Q Consensus 84 ~v~~ 87 (341)
.|.+
T Consensus 71 ~v~~ 74 (74)
T cd00590 71 RVEF 74 (74)
T ss_pred EEeC
Confidence 8864
No 86
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.13 E-value=1.7e-10 Score=101.12 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=71.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHH----HHcccCCeeEEEEEcC--CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLHM----VFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~----~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
++.+|. |.||.+.+..++|+. ||+.||+|.+|+.++. -+| +|||.|.+.+.|..|+.+|+|..++|+ .
T Consensus 8 pn~TlY--InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG-QA~VvFk~~~~As~A~r~l~gfpFygK---~ 81 (221)
T KOG4206|consen 8 PNGTLY--INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG-QAFVVFKETEAASAALRALQGFPFYGK---P 81 (221)
T ss_pred CCceEe--ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC-ceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence 344555 999999999999888 9999999999998743 367 599999999999999999999999999 9
Q ss_pred EEEEeecCCCCccc
Q 019429 209 LHISYSRHTDLSIK 222 (341)
Q Consensus 209 l~v~~s~~~~~~~~ 222 (341)
|+|.||+.++..+.
T Consensus 82 mriqyA~s~sdii~ 95 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIA 95 (221)
T ss_pred hheecccCccchhh
Confidence 99999988865543
No 87
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=4.9e-10 Score=81.20 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=62.0
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
|+|.||+..+++++|+++|+.||.|.++.+.... .|+ |||+|.+.++|..|++.+++..+.++ .|+|+|
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~-~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGF-AFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 4599999999999999999999999999987643 465 99999999999999999999999988 888864
No 88
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.3e-10 Score=110.31 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=66.2
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
..|+||||+.++|+ |.|+++|++||.|.+|+.++ -||||.|.+.++|.+|++.+||++| .|..|.|
T Consensus 260 KvLYVRNL~~~tTe-E~lk~~F~~~G~veRVkk~r----DYaFVHf~eR~davkAm~~~ngkel---------dG~~iEv 325 (506)
T KOG0117|consen 260 KVLYVRNLMESTTE-ETLKKLFNEFGKVERVKKPR----DYAFVHFAEREDAVKAMKETNGKEL---------DGSPIEV 325 (506)
T ss_pred eeeeeeccchhhhH-HHHHHHHHhccceEEeeccc----ceeEEeecchHHHHHHHHHhcCcee---------cCceEEE
Confidence 36999999999998 78999999999999998774 2799999999999999999999995 6999999
Q ss_pred EeccCCc
Q 019429 86 TYSAHTD 92 (341)
Q Consensus 86 ~~s~~~~ 92 (341)
.++|+.+
T Consensus 326 tLAKP~~ 332 (506)
T KOG0117|consen 326 TLAKPVD 332 (506)
T ss_pred EecCChh
Confidence 9999653
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.8e-10 Score=103.16 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=68.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
-++|||.-|++++++ .+|+..|+.||+|.+|.|++ +++++||||||.+..+..+|.+..+|..| .|
T Consensus 101 y~TLFv~RLnydT~E-skLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---------dg 170 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSE-SKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---------DG 170 (335)
T ss_pred cceeeeeeccccccH-HHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee---------cC
Confidence 479999999999998 79999999999999998887 45677999999999999999999999996 69
Q ss_pred ceEEEEeccC
Q 019429 81 CTLRITYSAH 90 (341)
Q Consensus 81 ~~i~v~~s~~ 90 (341)
+.|-|.+-..
T Consensus 171 rri~VDvERg 180 (335)
T KOG0113|consen 171 RRILVDVERG 180 (335)
T ss_pred cEEEEEeccc
Confidence 9999987553
No 90
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=6.4e-10 Score=94.42 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=63.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
|||+|||..|-+.+|.+||.+||.|..|.+.... ..| |||+|+|..+|+.||..-+|+.+.+- .|+|+|+..
T Consensus 9 iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-afVeFEd~RDAeDAiygRdGYdydg~---rLRVEfprg 82 (241)
T KOG0105|consen 9 IYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-AFVEFEDPRDAEDAIYGRDGYDYDGC---RLRVEFPRG 82 (241)
T ss_pred EEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-eEEEecCccchhhhhhcccccccCcc---eEEEEeccC
Confidence 5699999999999999999999999999886544 235 99999999999999999999998775 999999754
No 91
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.04 E-value=2.9e-10 Score=96.38 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=65.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|||+||+..+|++.|+++|-+.|.|++|.|.+. .+|+ |||+|.++|+|..|++.||..+|+|+ +|+|.-+.
T Consensus 12 iyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGy-gF~Ef~~eedadYAikiln~VkLYgr---pIrv~kas 87 (203)
T KOG0131|consen 12 LYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGY-GFAEFRTEEDADYAIKILNMVKLYGR---PIRVNKAS 87 (203)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccce-eEEEEechhhhHHHHHHHHHHHhcCc---eeEEEecc
Confidence 459999999999999999999999999998754 3677 99999999999999999999999999 99999776
No 92
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1e-10 Score=113.81 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=117.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
-|+|+|-|||..+++ ++|+.+|+.||+|.+|+.-+. +.+.+||+|-|..+|++|+++||+.+| .|+.|+
T Consensus 75 ~~~L~v~nl~~~Vsn-~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~---------~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSN-DTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREI---------AGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCH-HHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHh---------hhhhhc
Confidence 489999999999999 799999999999999765544 345799999999999999999999997 477777
Q ss_pred EEeccCCcccccccCccCc-CCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019429 85 ITYSAHTDLSVKFQSHRSR-DYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 163 (341)
Q Consensus 85 v~~s~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 163 (341)
...+..+....... ..-+ ++..+.+. ++.-+|. .+++ ++.|.+.++..-++.+|+.+|
T Consensus 144 ~~~~~~~~~~~~~~-~~~~~~~~~p~a~----------s~pgg~~------~~~~----~g~l~P~~s~~~~~~~~~~~~ 202 (549)
T KOG4660|consen 144 RPGGARRAMGLQSG-TSFLNHFGSPLAN----------SPPGGWP------RGQL----FGMLSPTRSSILLEHISSVDG 202 (549)
T ss_pred CCCcccccchhccc-chhhhhccchhhc----------CCCCCCc------CCcc----eeeeccchhhhhhhcchhccC
Confidence 43333221111000 0000 01111000 0000111 1222 233888899988999999999
Q ss_pred CeeEEEEE-cCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 164 PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 164 ~v~~v~i~-~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
.+.. +-. ..+. +-|++|.+..++..+...+ |..+.++ ..-++|+....
T Consensus 203 ~~~~-~~~~~~~h--q~~~~~~~~~s~a~~~~~~-G~~~s~~---~~v~t~S~~~g 251 (549)
T KOG4660|consen 203 SSPG-RETPLLNH--QRFVEFADNRSYAFSEPRG-GFLISNS---SGVITFSGPGG 251 (549)
T ss_pred cccc-ccccchhh--hhhhhhccccchhhcccCC-ceecCCC---CceEEecCCCc
Confidence 8887 533 3333 6899999999997777644 7777777 67788887643
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=5e-10 Score=109.15 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=68.2
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+.++|+|||++.++ |+|.++|+..|.|.++++.- ++.++|||++|.+.|+|++|++.|||.++ .|+
T Consensus 19 ~~v~vgnip~~~se-~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---------~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE-EQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---------NGR 88 (435)
T ss_pred cceEecCCCCcccH-HHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---------CCc
Confidence 78999999999999 78999999999999997664 44556899999999999999999999994 799
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
+|+|.|+...
T Consensus 89 ~l~v~~~~~~ 98 (435)
T KOG0108|consen 89 KLRVNYASNR 98 (435)
T ss_pred eEEeeccccc
Confidence 9999998743
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=2.6e-11 Score=102.56 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=63.9
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
|+|.|||++.|+ .||.-+||+||+|++|.+++ +++++|||+.|+|..+-..||+.|||..| .||+|
T Consensus 38 Iyiggl~~~LtE-gDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---------~gRti 107 (219)
T KOG0126|consen 38 IYIGGLPYELTE-GDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---------LGRTI 107 (219)
T ss_pred EEECCCcccccC-CcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---------cceeE
Confidence 789999999999 88999999999999999988 44666799999999999999999999985 69999
Q ss_pred EEEe
Q 019429 84 RITY 87 (341)
Q Consensus 84 ~v~~ 87 (341)
+|..
T Consensus 108 rVDH 111 (219)
T KOG0126|consen 108 RVDH 111 (219)
T ss_pred Eeee
Confidence 9974
No 95
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=7.3e-10 Score=81.48 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=47.8
Q ss_pred HHHHHHHhh----ccCcceEEE--Eee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 20 SGERAHVFS----AFGFVHKIT--TFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 20 e~~L~~lF~----~fG~V~~v~--i~~-----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
+++|+++|+ .||.|.+|. ++. +.++++|||+|.+.++|.+|++.|||+.+ .|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---------~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---------DGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEeC
Confidence 478888888 999999984 333 23456899999999999999999999985 68888763
No 96
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=3.6e-10 Score=102.08 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=65.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
++|+|||.++++.+|+.||++||+|+++.|++ + +|||+.+|...|..||.+|||+.|.|. .|+|+-||.+
T Consensus 5 LFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--N--YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK 74 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLFEQYGKVLECDIVK--N--YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK 74 (346)
T ss_pred hhccCCCcccchHHHHHHHHhhCceEeeeeec--c--cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence 34999999999999999999999999999985 2 699999999999999999999999999 9999999876
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-10 Score=101.14 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=70.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.-|+|+|.-|--++++ ..|+..|-+||.|.+|.+.- .+.+++|||||...|+|..||+.||+.+++
T Consensus 9 ~KrtlYVGGladeVte-kvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~--------- 78 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTE-KVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF--------- 78 (298)
T ss_pred cceeEEeccchHHHHH-HHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---------
Confidence 3589999999999988 79999999999999997653 234446999999999999999999999965
Q ss_pred CceEEEEeccCCcccc
Q 019429 80 PCTLRITYSAHTDLSV 95 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~ 95 (341)
||+|+|.++++.+++-
T Consensus 79 GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 79 GRTIRVNLAKPEKIKE 94 (298)
T ss_pred ceeEEEeecCCccccC
Confidence 9999999999775543
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=4.5e-11 Score=101.10 Aligned_cols=70 Identities=23% Similarity=0.444 Sum_probs=64.7
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 140 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
+|||+||++..||.+|..+||+||+|+.|.+.+++ .|| ||+.|+|..+...|+.+|||..|.|+ .|+|+-
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---tirVDH 111 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH 111 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---eEEeee
Confidence 46799999999999999999999999999987643 678 99999999999999999999999999 999974
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=7.2e-10 Score=89.54 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=64.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+-+|| |.++....|+|++++.|+.||+|+.|.+.-+. +|+ |+|+|++.++|.+|++.|||..|.++ .|.
T Consensus 72 GwIi~--VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGY-aLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 72 GWIIF--VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGY-ALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred eEEEE--EeccCcchhHHHHHHHHhhcccccceeeccccccccccce-eeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 44556 88999999999999999999999999874322 354 99999999999999999999999999 999
Q ss_pred EEeec
Q 019429 211 ISYSR 215 (341)
Q Consensus 211 v~~s~ 215 (341)
|+|.-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 99874
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.5e-10 Score=100.61 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=108.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|+|+|.||..++++ +.|.+||-.-|.|.+|.|.+. +-+ +|||+|.++-+..-|++.|||..++ +
T Consensus 8 ~drtl~v~n~~~~v~e-elL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---------~ 76 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSE-ELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE---------E 76 (267)
T ss_pred hhhHHHHHhhhhhhhH-HHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc---------c
Confidence 3699999999999988 799999999999999998872 334 5999999999999999999998864 5
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
..|+|.+-.-. + -.-|+..++++.++.+|+
T Consensus 77 ~e~q~~~r~G~--------------------------------------------s------hapld~r~~~ei~~~v~s 106 (267)
T KOG4454|consen 77 DEEQRTLRCGN--------------------------------------------S------HAPLDERVTEEILYEVFS 106 (267)
T ss_pred chhhcccccCC--------------------------------------------C------cchhhhhcchhhheeeec
Confidence 55555431100 0 011556889999999999
Q ss_pred ccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 161 AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 161 ~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
.-|.+..+++.+.+ +.+ +|+.+.-..+.-.|+...++.++.-+
T Consensus 107 ~a~p~~~~R~~~~~d~rnrn~-~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 107 QAGPIEGVRIPTDNDGRNRNF-GFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred ccCCCCCccccccccCCccCc-cchhhhhhhcCcHHhhhhcccCcCCC
Confidence 99999999886543 334 88888877777788877777766655
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=5.1e-10 Score=114.03 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=130.0
Q ss_pred eecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 3 YICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
-.-|+|+..||..+.++ .+|+..|..+|.|.+|.|.. +..--||||.|.+...+-+|+-.+.+..| .
T Consensus 370 ~atrTLf~Gnl~~kl~e-seiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I---------~ 439 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTE-SEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI---------G 439 (975)
T ss_pred hhhhhhhhcCcccchhh-hhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc---------c
Confidence 34689999999999999 78999999999999998765 22223699999999999999999999886 2
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
...+++.+...+. ..++-++ ++.|..++....|...|
T Consensus 440 ~g~~r~glG~~ks-----------------------------------------t~ttr~~--sgglg~w~p~~~l~r~f 476 (975)
T KOG0112|consen 440 NGTHRIGLGQPKS-----------------------------------------TPTTRLQ--SGGLGPWSPVSRLNREF 476 (975)
T ss_pred cCccccccccccc-----------------------------------------ccceeec--cCCCCCCChHHHHHHHh
Confidence 3355555544310 1133455 89999999999999999
Q ss_pred cccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 160 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
..||.|..|.+-.... +|+|+|++...|..|...|-|..|.+. ...|+|.|++..
T Consensus 477 d~fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~ 531 (975)
T KOG0112|consen 477 DRFGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPP 531 (975)
T ss_pred hccCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCC
Confidence 9999999987765443 699999999999999999999999875 568999999754
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=95.25 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=63.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+...|+|++|+++++.|.|++.|++||+|++.+++.+ ++|+ |||.|.|.++|.+|.+.-| -.|+|+ +..
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGy-GfVTf~d~~aa~rAc~dp~-piIdGR---~aN 84 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGY-GFVTFRDAEAATRACKDPN-PIIDGR---KAN 84 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccce-eeEEeecHHHHHHHhcCCC-Cccccc---ccc
Confidence 44555779999999999999999999999999987653 3676 9999999999999998654 457888 777
Q ss_pred EEeecC
Q 019429 211 ISYSRH 216 (341)
Q Consensus 211 v~~s~~ 216 (341)
|.+|..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 777654
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.93 E-value=3.8e-09 Score=95.72 Aligned_cols=74 Identities=27% Similarity=0.524 Sum_probs=66.1
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 137 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 137 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
..|+ |+||+..+|+++|+++|..||.|..|.+..+ .+|+ |||+|.+.++|..|++.++|..|.++ .|+|
T Consensus 116 ~~l~--v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~-~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~v 189 (306)
T COG0724 116 NTLF--VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGF-AFVEFESEESAEKAIEELNGKELEGR---PLRV 189 (306)
T ss_pred ceEE--EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCce-EEEEecCHHHHHHHHHHcCCCeECCc---eeEe
Confidence 5555 9999999999999999999999999887543 2576 99999999999999999999999999 9999
Q ss_pred EeecC
Q 019429 212 SYSRH 216 (341)
Q Consensus 212 ~~s~~ 216 (341)
.++..
T Consensus 190 ~~~~~ 194 (306)
T COG0724 190 QKAQP 194 (306)
T ss_pred ecccc
Confidence 99653
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.3e-09 Score=88.11 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEe--ee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTF--EK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~--~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
|+|.++-.++++ +++++.|..||+|.+|.+. ++ --++||+|||.+.++|++||+.|||.+| -+.+|
T Consensus 75 i~VtgvHeEatE-edi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---------l~q~v 144 (170)
T KOG0130|consen 75 IFVTGVHEEATE-EDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---------LGQNV 144 (170)
T ss_pred EEEeccCcchhH-HHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---------hCCce
Confidence 678888888888 7999999999999998544 22 2356899999999999999999999995 58999
Q ss_pred EEEecc
Q 019429 84 RITYSA 89 (341)
Q Consensus 84 ~v~~s~ 89 (341)
.|.|+-
T Consensus 145 ~VDw~F 150 (170)
T KOG0130|consen 145 SVDWCF 150 (170)
T ss_pred eEEEEE
Confidence 999864
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.91 E-value=3.6e-09 Score=77.77 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=47.9
Q ss_pred HHHHHHHHc----ccCCeeEEE--EEc------CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 152 LDVLHMVFS----AFGPVQKIA--MFD------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 152 ~~~L~~~F~----~fG~v~~v~--i~~------~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+++|+++|+ .||.|.+|. +.. ..+|+ |||+|.+.++|.+|++.|||..+.|+ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999985 332 23677 99999999999999999999999998 8775
No 106
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=6e-09 Score=94.56 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=68.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+-++|| |.-|++.++|+.|+..|+.||.|++|.|+.. .+|+ |||+|++..+-.+|.+..+|..|.++ .|
T Consensus 100 Py~TLF--v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGY-AFIeye~erdm~~AYK~adG~~Idgr---ri 173 (335)
T KOG0113|consen 100 PYKTLF--VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGY-AFIEYEHERDMKAAYKDADGIKIDGR---RI 173 (335)
T ss_pred ccceee--eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccce-EEEEeccHHHHHHHHHhccCceecCc---EE
Confidence 356777 8899999999999999999999999998753 3676 99999999999999999999999999 88
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
-|++-....+
T Consensus 174 ~VDvERgRTv 183 (335)
T KOG0113|consen 174 LVDVERGRTV 183 (335)
T ss_pred EEEecccccc
Confidence 8887655443
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=4.1e-09 Score=102.80 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=66.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|+|+++++++|+|.++|+..|.|..+++..+. +|| ||++|.+.++|.+|++.|||.++.|+ +|+|.|+.
T Consensus 21 v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v~~~~ 96 (435)
T KOG0108|consen 21 VFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGR---KLRVNYAS 96 (435)
T ss_pred eEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCc---eEEeeccc
Confidence 4599999999999999999999999999975432 677 99999999999999999999999999 99999996
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 543
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.2e-09 Score=97.50 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CC---eEEEEEcCChhHHHHHHHHhcCceeCCCC
Q 019429 130 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGG 205 (341)
Q Consensus 130 ~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g---~~afV~F~~~~~A~~Ai~~l~g~~i~~~~ 205 (341)
+.+.++.+||| |..|.+-+|+|+|.-+||+||+|..+.+++.. .| .+|||+|++.++.++|.=+|++.-|.++
T Consensus 233 Ad~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr- 309 (479)
T KOG0415|consen 233 ADVKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR- 309 (479)
T ss_pred cccCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc-
Confidence 34568899999 88888888999999999999999999877644 33 2699999999999999999999999999
Q ss_pred cceEEEEeecCC
Q 019429 206 FCKLHISYSRHT 217 (341)
Q Consensus 206 ~~~l~v~~s~~~ 217 (341)
.|+|.||..-
T Consensus 310 --RIHVDFSQSV 319 (479)
T KOG0415|consen 310 --RIHVDFSQSV 319 (479)
T ss_pred --eEEeehhhhh
Confidence 9999998543
No 109
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.79 E-value=6e-09 Score=98.81 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=63.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
-|+ |+|||||+++|+ +.||+-|.+||.|.-+.|+. .+++ +-|.|.+.|+|++|+..|||.. +.|+.
T Consensus 536 a~q-IiirNlP~dfTW-qmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~---------l~Gr~ 602 (608)
T KOG4212|consen 536 ACQ-IIIRNLPFDFTW-QMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSR---------LDGRN 602 (608)
T ss_pred ccE-EEEecCCccccH-HHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCc---------ccCce
Confidence 377 999999999999 79999999999999887776 3344 6999999999999999999998 57999
Q ss_pred EEEEe
Q 019429 83 LRITY 87 (341)
Q Consensus 83 i~v~~ 87 (341)
|+|.|
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99987
No 110
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=7.6e-08 Score=89.18 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=64.3
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHH-hcCceeCCCCcceEEEEeecC
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA-LEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~-l~g~~i~~~~~~~l~v~~s~~ 216 (341)
..+||++|-..++|.+|++.|.+||+|..|+++...+ ||||+|.++++|+.|.+. +|...|.|. .|+|.|++.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEEEEeCCC
Confidence 3455999988999999999999999999999998876 899999999999998855 455556777 999999988
No 111
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=5.6e-08 Score=90.06 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=65.1
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
.+|+|++|-.++++ .+|++.|.+||+|..|+++.+. +.|||+|.+.++|+.|.+..-++.+ +.|+.|+|
T Consensus 229 ~tLyIg~l~d~v~e-~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lv--------I~G~Rl~i 297 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLE-QDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLV--------INGFRLKI 297 (377)
T ss_pred eEEEecccccchhH-HHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceee--------ecceEEEE
Confidence 57999999888877 7999999999999999988743 4799999999999999997777554 79999999
Q ss_pred EeccC
Q 019429 86 TYSAH 90 (341)
Q Consensus 86 ~~s~~ 90 (341)
.|+..
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99886
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=1.4e-07 Score=92.23 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=66.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee--ec--CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE--KT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~--~~--~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
-.|.|||+-|+..+.. .||+.||++||+|+-..++. ++ .+.|+||+|.+.++|.++|+.|+-.+ +.
T Consensus 404 ~gRNlWVSGLSstTRA-tDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE---------LH 473 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRA-TDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE---------LH 473 (940)
T ss_pred cccceeeeccccchhh-hHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh---------hc
Confidence 3589999999998887 79999999999998775554 32 34589999999999999999999998 57
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+-|.|..++..
T Consensus 474 GrmISVEkaKNE 485 (940)
T KOG4661|consen 474 GRMISVEKAKNE 485 (940)
T ss_pred ceeeeeeecccC
Confidence 999999988743
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=7.3e-08 Score=86.35 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=65.3
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.|||=.||-|-.+ .||..+|-.||.|++.+++- ..++.++||.|.+..+|+.||..|||..| +-|.
T Consensus 287 NlFIYHLPQEFgD-aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI---------GMKR 356 (371)
T KOG0146|consen 287 NLFIYHLPQEFGD-AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI---------GMKR 356 (371)
T ss_pred eEEEEeCchhhcc-HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh---------hhhh
Confidence 5899999999999 78999999999999876654 34677899999999999999999999986 5778
Q ss_pred EEEEeccCCc
Q 019429 83 LRITYSAHTD 92 (341)
Q Consensus 83 i~v~~s~~~~ 92 (341)
|+|+...+++
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 8888766654
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=5.1e-07 Score=89.00 Aligned_cols=181 Identities=16% Similarity=0.182 Sum_probs=121.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhcc-----------Cc-ceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAF-----------GF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 71 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~f-----------G~-V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~ 71 (341)
.-|.+++.+++..+++ +..-.+|+.- |+ |+.+.+-. .+.+||++|.+.++|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e-~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~-~~~~~~--- 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNE-ESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAM-ALDGII--- 246 (500)
T ss_pred hhhhhcccccCCccCc-HhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhh-cccchh---
Confidence 4578999999999999 5666677664 43 55554433 3345999999999999998 466654
Q ss_pred cCCCCCCCCceEEEEeccCCc--ccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCC
Q 019429 72 YLLPENMGPCTLRITYSAHTD--LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA 149 (341)
Q Consensus 72 ~~~~~~~~g~~i~v~~s~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~ 149 (341)
+.|.++++.--.... ..+.... ......+ ..+... ........++|++|+..
T Consensus 247 ------f~g~~~~~~r~~d~~~~p~~~~~~------------~~~~~~~------~~~~~t--~~~~~~~ki~v~~lp~~ 300 (500)
T KOG0120|consen 247 ------FEGRPLKIRRPHDYQPVPGITLSP------------SQLGKVG------LLPAST--DVPDSPNKIFVGGLPLY 300 (500)
T ss_pred ------hCCCCceecccccccCCccchhhh------------ccccccC------Cccccc--CcccccchhhhccCcCc
Confidence 367777665322110 0000000 0000000 000000 01122233559999999
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCcc
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 221 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~~ 221 (341)
++++++.++.+.||.+....++... .|+ ||.+|.|..-...|+..|||..+.++ .|.|..|-......
T Consensus 301 l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~-af~ey~dpsvtd~A~agLnGm~lgd~---~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 301 LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK---KLVVQRAIVGASNA 373 (500)
T ss_pred cCHHHHHHHHHhcccchhheeecccccccccce-eeeeeeCCcchhhhhcccchhhhcCc---eeEeehhhccchhc
Confidence 9999999999999999988776432 465 99999999999999999999999999 99999886655443
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=6.9e-08 Score=94.41 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=62.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+...|+ |.|||..|++++|+.+|+.||+|..|+.-..++|. .||+|-|..+|++|+++|++.+|.++ .|+
T Consensus 74 ~~~~L~--v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~-~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 74 NQGTLV--VFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGI-VFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred ccceEE--EEecCCcCCHHHHHHHHHhhcchhhhhcccccCce-EEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 356677 88999999999999999999999998876666675 99999999999999999999999998 666
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=5.5e-08 Score=84.88 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=65.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC--eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g--~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
.++|+ |.|+...||||-|.++|-+-|.|.||.|...+.+ -+|||.|.++.+...|++.|||.++++. .++|++
T Consensus 9 drtl~--v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLL--VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQRTL 83 (267)
T ss_pred hhHHH--HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhccc
Confidence 56666 9999999999999999999999999999765422 1399999999999999999999999999 888877
Q ss_pred ec
Q 019429 214 SR 215 (341)
Q Consensus 214 s~ 215 (341)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 64
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=2.5e-07 Score=86.66 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=111.3
Q ss_pred cccCCCCCCCCHHHHHHHhh---cc-CcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 9 SRKYLQWQLSASGERAHVFS---AF-GFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~lF~---~f-G~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..|-||++|++ .++.++|- .. |.+..|++.++ +-.+-|||.|..+|+|+.|+..-.+ . ++.|
T Consensus 165 RmRGLPfdat~-~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq-~---------iGqR 233 (508)
T KOG1365|consen 165 RMRGLPFDATA-LDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ-N---------IGQR 233 (508)
T ss_pred EecCCCCCcch-HHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH-H---------HhHH
Confidence 36889999999 68999994 44 35677776663 2223599999999999999975443 2 2445
Q ss_pred eEEEEeccCCccc--ccccCcc--CcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019429 82 TLRITYSAHTDLS--VKFQSHR--SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 157 (341)
Q Consensus 82 ~i~v~~s~~~~l~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~ 157 (341)
-|.+..|+..+.. +.+.... ....+.+.++..+ ..-........++. +.+||++.+.|+|.+
T Consensus 234 YIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p------------~~~~p~~~~kdcvR--LRGLPy~AtvEdIL~ 299 (508)
T KOG1365|consen 234 YIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGP------------ARLVPPTRSKDCVR--LRGLPYEATVEDILD 299 (508)
T ss_pred HHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCc------------cccCCCCCCCCeeE--ecCCChhhhHHHHHH
Confidence 5555545432211 1100000 0000011100000 00000011234455 899999999999999
Q ss_pred HHcccCCeeEE---EEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCCc
Q 019429 158 VFSAFGPVQKI---AMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 220 (341)
Q Consensus 158 ~F~~fG~v~~v---~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~~ 220 (341)
+|..|..-++. .+.-.. .|- |||+|.+.|.|..|....+++....+ -|.|--+...+++
T Consensus 300 FlgdFa~~i~f~gVHmv~N~qGrPSGe-AFIqm~nae~a~aaaqk~hk~~mk~R---YiEvfp~S~eeln 365 (508)
T KOG1365|consen 300 FLGDFATDIRFQGVHMVLNGQGRPSGE-AFIQMRNAERARAAAQKCHKKLMKSR---YIEVFPCSVEELN 365 (508)
T ss_pred HHHHHhhhcccceeEEEEcCCCCcChh-hhhhhhhhHHHHHHHHHHHHhhcccc---eEEEeeccHHHHH
Confidence 99998854443 332211 354 99999999999999999998876566 7777655544443
No 118
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.49 E-value=1.7e-07 Score=87.34 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=119.8
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..++++++.+.+.+ .++..++...|.+....+.. ...++++.|.|...+.+..|+.......+ .++
T Consensus 89 ~~~f~g~~s~~~e~-~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~---------~~~ 158 (285)
T KOG4210|consen 89 STFFVGELSENIEE-SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL---------DGN 158 (285)
T ss_pred ccccccccccchhh-ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc---------ccc
Confidence 36789999998888 47888999999877664443 23445699999999999999974443342 355
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
.+.....+...+.+.... .+ .........++ |.|++..+++|+|+..|..
T Consensus 159 ~~~~dl~~~~~~~~~n~~--~~--------------------------~~~~~s~~~~~--~~~~~f~~~~d~~~~~~~~ 208 (285)
T KOG4210|consen 159 KGEKDLNTRRGLRPKNKL--SR--------------------------LSSGPSDTIFF--VGELDFSLTRDDLKEHFVS 208 (285)
T ss_pred cccCcccccccccccchh--cc--------------------------cccCcccccee--ecccccccchHHHhhhccC
Confidence 555544443322111000 00 00011234444 8999999999999999999
Q ss_pred cCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 162 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 162 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+|.|+.+++.... .|+ |+|+|.+...+..|+.. +...+++. ++.+.+.+...
T Consensus 209 ~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~ 265 (285)
T KOG4210|consen 209 SGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKLALND-QTRSIGGR---PLRLEEDEPRP 265 (285)
T ss_pred cCcceeeccCCCCCccchhhh-hhhhhhhchhHHHHhhc-ccCcccCc---ccccccCCCCc
Confidence 9999999986543 456 99999999999999988 88899988 89999876553
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=2.9e-06 Score=74.45 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=67.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC-----eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG-----LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g-----~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
-++|| |.+||..|...+|+.||..|-..+...+--.+++ ..|||.|.+..+|+.|+.+|||..++-..-..|+
T Consensus 34 VRTLF--VSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLF--VSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceee--eccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35566 8999999999999999999988777655322222 2499999999999999999999999876455999
Q ss_pred EEeecCCCCc
Q 019429 211 ISYSRHTDLS 220 (341)
Q Consensus 211 v~~s~~~~~~ 220 (341)
|+++|.....
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999876643
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=1.1e-06 Score=65.76 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=48.6
Q ss_pred cccccCCCCCCCC---HHHHHHHhhccC-cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSA---SGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~---e~~L~~lF~~fG-~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
-|.|.|||.+..- ..-|+.|+..+| +|.+|. ++.|.|.|.+.|.|.+|.+.|+|..++ |+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf---------G~k 68 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF---------GNK 68 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS---------SS-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc---------cce
Confidence 4789999998765 247888999995 677762 345999999999999999999999865 999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|.|+|+...
T Consensus 69 I~v~~~~~~ 77 (90)
T PF11608_consen 69 ISVSFSPKN 77 (90)
T ss_dssp -EEESS--S
T ss_pred EEEEEcCCc
Confidence 999998643
No 121
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=2.8e-06 Score=82.74 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=59.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|.|||.++++++|+++|..||.|++..|..++ .+.+|||+|.+.+++..|+++- -..|.++ +|.|+--+
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~---kl~Veek~ 365 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR---KLNVEEKR 365 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe---eEEEEecc
Confidence 6699999999999999999999999999887544 1245999999999999999874 6667777 88888533
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=1.2e-07 Score=96.74 Aligned_cols=138 Identities=18% Similarity=0.152 Sum_probs=108.3
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~----~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
..|++||+..+.+ ++|+..|+.+|.+..|.+. ++.-+++|+|+|.+.++|.+||...++..+ |
T Consensus 669 ~~fvsnl~~~~~~-~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~----------g-- 735 (881)
T KOG0128|consen 669 KIFVSNLSPKMSE-EDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF----------G-- 735 (881)
T ss_pred HHHHhhcchhhcC-chhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh----------h--
Confidence 4689999999999 6899999999887665333 233445799999999999999975554321 1
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
+ ..|.|.|.+...|.++|+.+|+.+
T Consensus 736 ------K-------------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 736 ------K-------------------------------------------------ISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred ------h-------------------------------------------------hhhheeCCCCCCchHHHHhhcccc
Confidence 1 114489999999999999999999
Q ss_pred CCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 163 GPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 163 G~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
|.++++++...+ .|. |+|.|.+..+|.+++..+++..+... .+.|..+.+
T Consensus 761 gn~~~~~~vt~r~gkpkg~-a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGK-ARVDYNTEADASRKVASVDVAGKREN---NGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccc-eeccCCCcchhhhhcccchhhhhhhc---CccccccCC
Confidence 999999865432 455 99999999999999988888777666 677776655
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=76.31 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=58.0
Q ss_pred ccccCCCCCCCCHHHHHHHhhcc-CcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 8 LSRKYLQWQLSASGERAHVFSAF-GFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~f-G~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+++..||.-..+ .++..+|.+| |.|..+++-| +++++||||||.+.|.|.-|-+.||++-+ .++-
T Consensus 52 ~~~~~~p~g~~e-~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---------~e~l 121 (214)
T KOG4208|consen 52 VYVDHIPHGFFE-TEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---------MEHL 121 (214)
T ss_pred eeecccccchhH-HHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---------hhhe
Confidence 355667776666 6788899998 7777777755 46778999999999999999999999764 4777
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 788775433
No 124
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.33 E-value=2.8e-06 Score=63.50 Aligned_cols=68 Identities=22% Similarity=0.442 Sum_probs=46.8
Q ss_pred EEeecCCCCCCHHH----HHHHHcccC-CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDV----LHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~----L~~~F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|.|||...+... |++|+..+| +|..| .++ .|+|.|.+.+.|.+|.+.|+|..++|. .|.|+|..
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~-tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~~~ 75 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGG-TAILRFPNQEFAERAQKRMEGEDVFGN---KISVSFSP 75 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT--EEEEESSHHHHHHHHHHHTT--SSSS-----EEESS-
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCC-EEEEEeCCHHHHHHHHHhhcccccccc---eEEEEEcC
Confidence 45999998888654 778888888 55544 234 499999999999999999999999999 99999985
Q ss_pred CC
Q 019429 216 HT 217 (341)
Q Consensus 216 ~~ 217 (341)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 44
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.32 E-value=1.5e-07 Score=89.22 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=119.0
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCc-ceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~-V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
-|++.||....+. +||+.+|..--- ...=.+++ + +||||.+.|..-|.+|++.++|+.- +.|+.+.+
T Consensus 3 klyignL~p~~~p-sdl~svfg~ak~~~~g~fl~k--~-gyafvd~pdq~wa~kaie~~sgk~e--------lqGkr~e~ 70 (584)
T KOG2193|consen 3 KLYIGNLSPQVTP-SDLESVFGDAKIPGSGQFLVK--S-GYAFVDCPDQQWANKAIETLSGKVE--------LQGKRQEV 70 (584)
T ss_pred cccccccCCCCCh-HHHHHHhccccCCCCcceeee--c-ceeeccCCchhhhhhhHHhhchhhh--------hcCceeec
Confidence 4789999999988 789999977511 11112332 3 4799999999999999999999864 68999999
Q ss_pred EeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019429 86 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 165 (341)
Q Consensus 86 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 165 (341)
.++-.++.. ++. +.+.|++.-..++.|..|...||.|
T Consensus 71 ~~sv~kkqr-----------------------------------------srk--~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 71 EHSVPKKQR-----------------------------------------SRK--IQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred cchhhHHHH-----------------------------------------hhh--hhHhcCCHHHHHHHHHHHHhccCCH
Confidence 887755322 222 3388999999999999999999999
Q ss_pred eEEEEEcCC-CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 166 QKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 166 ~~v~i~~~~-~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
+.+...... .....=|.|...+.+..|+..|||..+... .+++.|-...
T Consensus 108 e~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPde 157 (584)
T KOG2193|consen 108 ENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPDE 157 (584)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCchh
Confidence 998754333 211234689999999999999999999998 9999986443
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=7.1e-07 Score=86.80 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=60.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
-++|||+|||.+++. ++|+++|..||+|++..|..++ ...||||+|.+.++++.||++- .+. +++
T Consensus 288 ~~~i~V~nlP~da~~-~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~-------ig~ 356 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATP-AELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLE-------IGG 356 (419)
T ss_pred ccceEeecCCCCCCH-HHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccc-------cCC
Confidence 456999999999999 6799999999999998766532 2367999999999999999754 443 689
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+++.|+-.+
T Consensus 357 ~kl~Veek~ 365 (419)
T KOG0116|consen 357 RKLNVEEKR 365 (419)
T ss_pred eeEEEEecc
Confidence 999998543
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=8.2e-06 Score=79.52 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=101.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEe-e---------ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTF-E---------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~-~---------~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
-|.+|+.-|||++++ +.|...|..||.|.- .-. + +-+.+|+|+.|+++...+.-+.+..-.
T Consensus 259 S~KVFvGGlp~dise-~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~------- 329 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITE-AQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG------- 329 (520)
T ss_pred ccceeecCCCccccH-HHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc-------
Confidence 467899999999999 789999999998741 111 1 112248999999999999888766531
Q ss_pred CCCCCCceEEEEeccC--CcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCH
Q 019429 75 PENMGPCTLRITYSAH--TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTL 152 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~ 152 (341)
....++..+.. ++..+. -+.|...+.+.... +.....+.+++| |+.|+-.++.
T Consensus 330 -----~~~~yf~vss~~~k~k~VQ---IrPW~laDs~fv~d---------------~sq~lDprrTVF--VGgvprpl~A 384 (520)
T KOG0129|consen 330 -----EGNYYFKVSSPTIKDKEVQ---IRPWVLADSDFVLD---------------HNQPIDPRRTVF--VGGLPRPLTA 384 (520)
T ss_pred -----ccceEEEEecCccccccee---EEeeEeccchhhhc---------------cCcccCccceEE--ecCCCCcchH
Confidence 22233332222 111110 11111111100000 000112356666 9999999999
Q ss_pred HHHHHHHc-ccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHH
Q 019429 153 DVLHMVFS-AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 153 ~~L~~~F~-~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~ 195 (341)
++|..+|+ .||.|.-+-|-.+ -+|- |=|.|.+..+=.+||++
T Consensus 385 ~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 385 EELAMIMEDLFGGVLYVGIDTDPKLKYPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHHhcCceEEEEeccCcccCCCCCc-ceeeecccHHHHHHHhh
Confidence 99999999 7999999887544 2565 88999999998999874
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=8.4e-07 Score=82.49 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=62.7
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-e---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-K---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
-.|||=-|..-+++ +||.-+||.||+|.++.+++ + .+-.||||||.+.|+.++|.=.|++.-| ..+
T Consensus 240 NVLFVCKLNPVTtD-eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---------DDr 309 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTD-EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---------DDR 309 (479)
T ss_pred ceEEEEecCCcccc-cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---------ccc
Confidence 35777778776777 79999999999999998887 2 2335799999999999999999999775 699
Q ss_pred eEEEEecc
Q 019429 82 TLRITYSA 89 (341)
Q Consensus 82 ~i~v~~s~ 89 (341)
.|.|.||+
T Consensus 310 RIHVDFSQ 317 (479)
T KOG0415|consen 310 RIHVDFSQ 317 (479)
T ss_pred eEEeehhh
Confidence 99999987
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.26 E-value=2.5e-06 Score=74.14 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=62.3
Q ss_pred EEeecCCCCCCHHHHHHHHccc-CCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 141 ASIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~f-G~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+++..++.-+.+.++..+|.+| |.|+++++-+. ++|+ |||+|++.+.|.-|-+.||++-++++ .|.|.+-
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgY-AFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vm 127 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGY-AFVEFESEEVAKIAAETMNNYLLMEH---LLECHVM 127 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCce-EEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEe
Confidence 4488999999999999999999 66666666332 2566 99999999999999999999999999 9999998
Q ss_pred cCC
Q 019429 215 RHT 217 (341)
Q Consensus 215 ~~~ 217 (341)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 766
No 130
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=4.2e-06 Score=84.03 Aligned_cols=82 Identities=16% Similarity=0.381 Sum_probs=68.9
Q ss_pred CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-cCC------CCeEEEEEcCChhHHHHHHHHhcCceeCCCC
Q 019429 133 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 205 (341)
Q Consensus 133 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~~~------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~ 205 (341)
++..+.|. |+||++.|+++.|...|.+||.|..|+|+ .++ .--||||-|.++.+|.+|++.|+|..+++.
T Consensus 171 DP~TTNly--v~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~- 247 (877)
T KOG0151|consen 171 DPQTTNLY--VGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY- 247 (877)
T ss_pred CCccccee--eecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-
Confidence 34455544 99999999999999999999999999974 211 112799999999999999999999999999
Q ss_pred cceEEEEeecCCCC
Q 019429 206 FCKLHISYSRHTDL 219 (341)
Q Consensus 206 ~~~l~v~~s~~~~~ 219 (341)
.|++-|+|.-.+
T Consensus 248 --e~K~gWgk~V~i 259 (877)
T KOG0151|consen 248 --EMKLGWGKAVPI 259 (877)
T ss_pred --eeeecccccccc
Confidence 999999976543
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.25 E-value=2.7e-06 Score=83.43 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CC--eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g--~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
-++.|+ |..|...+-..+|++||++||+|+-.++++.. .| .++||.+.+.++|.+||+.|+.++|.|+ .|.
T Consensus 404 ~gRNlW--VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mIS 478 (940)
T KOG4661|consen 404 LGRNLW--VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MIS 478 (940)
T ss_pred ccccee--eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eee
Confidence 356788 78888788889999999999999988876543 22 3699999999999999999999999999 999
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
|.-+|..
T Consensus 479 VEkaKNE 485 (940)
T KOG4661|consen 479 VEKAKNE 485 (940)
T ss_pred eeecccC
Confidence 9988644
No 132
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=6.9e-05 Score=72.77 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=104.6
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEE-Eee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKIT-TFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~-i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
+-.|-|||.||+ +||.++|+-.=.|.+.+ +.. ....+-|||.|++.|.|++|+..-. .. ++-+-|
T Consensus 106 VRLRGLPfscte-~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr-e~---------iGhRYI 174 (510)
T KOG4211|consen 106 VRLRGLPFSCTE-EDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHR-EN---------IGHRYI 174 (510)
T ss_pred EEecCCCccCcH-HHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHH-Hh---------hccceE
Confidence 456889999999 78999999986666633 222 2233359999999999999997433 33 356777
Q ss_pred EEEeccCCccccccc---CccC-----------c---CCCCC---CC-------------CCC--CCccC--ccC-----
Q 019429 84 RITYSAHTDLSVKFQ---SHRS-----------R---DYTNP---YL-------------PVA--PSAID--ASG----- 121 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~---~~~~-----------~---~~~~~---~~-------------~~~--~~~~~--~~~----- 121 (341)
.|..|...++..-.. -... | ++-.. .. .-. ....+ ..+
T Consensus 175 EvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~ 254 (510)
T KOG4211|consen 175 EVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGG 254 (510)
T ss_pred EeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccc
Confidence 777665332211100 0000 0 00000 00 000 00000 000
Q ss_pred -CCcccC---------CCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE--cC--CCCeEEEEEcCChh
Q 019429 122 -QLSVGL---------DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF--DK--NGGLQALIQYPDVQ 187 (341)
Q Consensus 122 -~~~~~~---------~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~--~~--~~g~~afV~F~~~~ 187 (341)
...... .+....-.+...+|....||+..++.++.+.|+..=.+ .|.|- .. ..|- |+|+|.+.+
T Consensus 255 ~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGE-AdveF~t~e 332 (510)
T KOG4211|consen 255 RDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGE-ADVEFATGE 332 (510)
T ss_pred cccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCc-ceeecccch
Confidence 000000 00000111222677799999999999999999986444 55542 21 1344 999999999
Q ss_pred HHHHHHHHhcCceeCCC
Q 019429 188 TAVVAKEALEGHCIYDG 204 (341)
Q Consensus 188 ~A~~Ai~~l~g~~i~~~ 204 (341)
+|..|+.. ++..+..+
T Consensus 333 dav~Amsk-d~anm~hr 348 (510)
T KOG4211|consen 333 DAVGAMGK-DGANMGHR 348 (510)
T ss_pred hhHhhhcc-CCcccCcc
Confidence 99999864 56666555
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.19 E-value=6.4e-06 Score=74.54 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=65.5
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
..|+|.||++.|++++|+++|..||.++++-+.-+. .| +|-|.|...++|..|++.+||..+.|+ .|++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~G-ta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLG-TADVSFNRRDDAERAVKKYNGVALDGR---PMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCc-cceeeecchHhHHHHHHHhcCcccCCc---eeeeEEe
Confidence 446699999999999999999999999888774322 24 499999999999999999999999999 8988876
Q ss_pred cCCCC
Q 019429 215 RHTDL 219 (341)
Q Consensus 215 ~~~~~ 219 (341)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 55543
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2.1e-06 Score=76.06 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=63.2
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
|+|++|++.+.+.+|..+|..||.|..|.+.. || +||+|+|..+|.-|+..||+..|.+. .+.|.|++..
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---gf-~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~ 73 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN---GF-GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK 73 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceeec---cc-ceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence 67999999999999999999999999887753 76 89999999999999999999999998 6888887643
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.11 E-value=8.2e-06 Score=73.83 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=61.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+.|.||++.+++ +||++||+.||++..+.+-- +.+.+.|-|.|...++|.+||+.+||.. +.|+.|
T Consensus 85 ~v~v~NL~~~V~~-~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~---------ldG~~m 154 (243)
T KOG0533|consen 85 KVNVSNLPYGVID-ADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA---------LDGRPM 154 (243)
T ss_pred eeeeecCCcCcch-HHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc---------cCCcee
Confidence 4789999999999 79999999999888875443 2334579999999999999999999955 579999
Q ss_pred EEEecc
Q 019429 84 RITYSA 89 (341)
Q Consensus 84 ~v~~s~ 89 (341)
++....
T Consensus 155 k~~~i~ 160 (243)
T KOG0533|consen 155 KIEIIS 160 (243)
T ss_pred eeEEec
Confidence 988755
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.05 E-value=6.5e-06 Score=73.60 Aligned_cols=143 Identities=19% Similarity=0.295 Sum_probs=96.4
Q ss_pred HHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCcccccccCc
Q 019429 24 AHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 100 (341)
Q Consensus 24 ~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~ 100 (341)
...|+.+=...+..+++ ......+|+.|.+...-.++-..-+++.| +..+|++.-.+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---------~~~~VR~a~gt----------- 176 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKI---------GKPPVRLAAGT----------- 176 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccc---------cCcceeecccc-----------
Confidence 55666665555444443 22233599999988887777777777664 23334443221
Q ss_pred cCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----C
Q 019429 101 RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----G 175 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~ 175 (341)
.|..|.+.. |.. .. ..|+.+.|-.+|++|.|-..|.+|-...+.++.+++ .
T Consensus 177 ---swedPsl~e--------------w~~-----~D--fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk 232 (290)
T KOG0226|consen 177 ---SWEDPSLAE--------------WDE-----DD--FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK 232 (290)
T ss_pred ---ccCCccccc--------------Ccc-----cc--ceeecccccccccHHHHHHHHHhccchhhccccccccccccc
Confidence 122222111 100 11 224478888889999999999999988888776543 5
Q ss_pred CeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 176 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 176 g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
|+ +||.|.|.+++..|+..|||..+..+ +|++.-+
T Consensus 233 gy-gfVSf~~pad~~rAmrem~gkyVgsr---piklRkS 267 (290)
T KOG0226|consen 233 GY-GFVSFRDPADYVRAMREMNGKYVGSR---PIKLRKS 267 (290)
T ss_pred cc-eeeeecCHHHHHHHHHhhcccccccc---hhHhhhh
Confidence 66 99999999999999999999999988 7777644
No 137
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.01 E-value=0.00029 Score=65.78 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
..++.+.+||+||-+.+|+++|.+....-| .|.++++|.. ++|| |+|...+..+.++-++.|-...|.|+
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ-- 152 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQ-- 152 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCC--
Confidence 346778899999999999999988877766 5556666643 2576 99999999999999999999999998
Q ss_pred ceEEEEeecC
Q 019429 207 CKLHISYSRH 216 (341)
Q Consensus 207 ~~l~v~~s~~ 216 (341)
.+.-++|-|.
T Consensus 153 ~P~V~~~NK~ 162 (498)
T KOG4849|consen 153 SPTVLSYNKT 162 (498)
T ss_pred CCeeeccchh
Confidence 3555666553
No 138
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.94 E-value=2.5e-05 Score=72.66 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=64.3
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCC
Q 019429 138 VLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 205 (341)
Q Consensus 138 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~ 205 (341)
...|||.|||..||.+++.++|+++|-|.+ |++.+.+ +|. |+|.|-..++...|++.|++..|.|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg~- 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRGK- 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccCc-
Confidence 345889999999999999999999998874 4565544 456 99999999999999999999999988
Q ss_pred cceEEEEeec
Q 019429 206 FCKLHISYSR 215 (341)
Q Consensus 206 ~~~l~v~~s~ 215 (341)
.|+|+-|+
T Consensus 212 --~~rVerAk 219 (382)
T KOG1548|consen 212 --KLRVERAK 219 (382)
T ss_pred --EEEEehhh
Confidence 99999775
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=3.7e-05 Score=61.02 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=38.1
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCc
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 199 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~ 199 (341)
|.+.++...++.++|+++|+.||.|.-|.+..... .|+|.|.+.++|.+|++.+.-.
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 33777889999999999999999999888877655 6999999999999999988755
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=79.54 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=65.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee-------ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-------~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.|++.||+..+++ +.|...|.+||.|..|+|+- +....++||-|.+..+|++|+++|+|+.| .
T Consensus 176 Nlyv~Nlnpsv~E-~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---------~ 245 (877)
T KOG0151|consen 176 NLYVGNLNPSVDE-NFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---------M 245 (877)
T ss_pred ceeeecCCccccH-HHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---------e
Confidence 5899999999998 78888999999999998874 23445799999999999999999999886 4
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
...+++.|++.-
T Consensus 246 ~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 EYEMKLGWGKAV 257 (877)
T ss_pred eeeeeecccccc
Confidence 889999998743
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.83 E-value=3.6e-05 Score=69.67 Aligned_cols=72 Identities=18% Similarity=0.388 Sum_probs=63.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|+|++..+|.+++...|+.||.|..|.|..++ +|+ +||+|.+.+.+..|++ |||..|.+. .+.|++-+
T Consensus 104 v~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~-~yvef~~~~~~~~ay~-l~gs~i~~~---~i~vt~~r 178 (231)
T KOG4209|consen 104 VWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGF-AYVEFSSYELVEEAYK-LDGSEIPGP---AIEVTLKR 178 (231)
T ss_pred EEEeccccccccchhhheeeccCCccceeeeccccCCCccee-EEEecccHhhhHHHhh-cCCcccccc---cceeeeee
Confidence 4499999999999999999999999988775433 456 9999999999999999 999999999 99999865
Q ss_pred CC
Q 019429 216 HT 217 (341)
Q Consensus 216 ~~ 217 (341)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 54
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=0.00042 Score=65.48 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=93.3
Q ss_pred cccCCCCCCCCHHHHHHHhhccCcce--EEEEe--eecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 9 SRKYLQWQLSASGERAHVFSAFGFVH--KITTF--EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~lF~~fG~V~--~v~i~--~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
..|-|||..++ .++..+|.---.+. .+++. .+.+-+.|.|.|.|.|.-+.|++.-... ..++.|.
T Consensus 64 RaRglpwq~Sd-~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh----------~g~ryie 132 (508)
T KOG1365|consen 64 RARGLPWQSSD-QDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHH----------MGTRYIE 132 (508)
T ss_pred EecCCCCCccc-CCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhh----------ccCCcee
Confidence 35889999999 68998887642221 12222 2333346999999999999999854432 3577777
Q ss_pred EEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc--
Q 019429 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF-- 162 (341)
Q Consensus 85 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f-- 162 (341)
|-.+...+. .+...-.+ ..... -.+...-+.|.+.+||+++++.++.++|..-
T Consensus 133 vYka~ge~f-~~iagg~s-----~e~~~-------------------flsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 133 VYKATGEEF-LKIAGGTS-----NEAAP-------------------FLSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred eeccCchhh-eEecCCcc-----ccCCC-------------------CCCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 765543321 11110000 00000 0011223446689999999999999999632
Q ss_pred --CCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHH
Q 019429 163 --GPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 163 --G~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~ 195 (341)
|.++.|.++++. .|. |||.|...++|..|+.+
T Consensus 188 v~~g~egvLFV~rpdgrpTGd-AFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 188 VTGGTEGVLFVTRPDGRPTGD-AFVLFACEEDAQFALRK 225 (508)
T ss_pred ccCCccceEEEECCCCCcccc-eEEEecCHHHHHHHHHH
Confidence 245555554431 456 99999999999999875
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.80 E-value=0.00012 Score=56.99 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhcc--CcceEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAF--GFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~f--G~V~~v~i~----~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
+|=+||||...+. ++|.+++.+. |...=+.+. .+.+.|||||.|.+.+.|.+-.+.++|+... ...+.
T Consensus 3 TvMirNIPn~~t~-~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~-----~~~s~ 76 (97)
T PF04059_consen 3 TVMIRNIPNKYTQ-EMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP-----NFNSK 76 (97)
T ss_pred eEEEecCCCCCCH-HHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc-----cCCCC
Confidence 5678999999999 5666665553 443322211 2556789999999999999999999999863 22356
Q ss_pred ceEEEEeccC
Q 019429 81 CTLRITYSAH 90 (341)
Q Consensus 81 ~~i~v~~s~~ 90 (341)
|...|.||+-
T Consensus 77 Kvc~i~yAri 86 (97)
T PF04059_consen 77 KVCEISYARI 86 (97)
T ss_pred cEEEEehhHh
Confidence 7778888873
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.74 E-value=3.5e-05 Score=69.69 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=63.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
-+.+|++|+.+.++.+ ++...|+.||.|..|.+.. +..+++|||+|.+.+.+.+|+. |||..| .+
T Consensus 101 ~~sv~v~nvd~~~t~~-~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---------~~ 169 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLT-KIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---------PG 169 (231)
T ss_pred CceEEEeccccccccc-hhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---------cc
Confidence 4789999999999994 5999999999998665554 3356689999999999999998 999985 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|++.+..-.
T Consensus 170 ~~i~vt~~r~~ 180 (231)
T KOG4209|consen 170 PAIEVTLKRTN 180 (231)
T ss_pred ccceeeeeeee
Confidence 99999876533
No 145
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.73 E-value=4e-05 Score=72.04 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=57.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |++|.+.+|+|.|++.|++||+|.++++.++ ++|| +||+|++.+...+++.. .-+.|.++ .|.
T Consensus 6 ~~Klf--iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgF-gfv~f~~~~~v~~vl~~-~~h~~dgr---~ve 78 (311)
T KOG4205|consen 6 SGKLF--IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGF-GFVTFATPEGVDAVLNA-RTHKLDGR---SVE 78 (311)
T ss_pred Cccee--ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccc-cceecCCCcchheeecc-cccccCCc---ccc
Confidence 55667 9999999999999999999999999998763 4687 99999999888888754 44556666 555
Q ss_pred EEee
Q 019429 211 ISYS 214 (341)
Q Consensus 211 v~~s 214 (341)
+.=+
T Consensus 79 ~k~a 82 (311)
T KOG4205|consen 79 PKRA 82 (311)
T ss_pred ceec
Confidence 4444
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.70 E-value=2.7e-05 Score=69.73 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=62.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.-.||+.-|.+|.++ +.|-..|.+|=.-....+.+ .++++|+||.|.+.+++.+|+.+|||+- ++.
T Consensus 190 DfRIfcgdlgNevnd-~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky---------Vgs 259 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVND-DVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY---------VGS 259 (290)
T ss_pred cceeecccccccccH-HHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc---------ccc
Confidence 346889999999999 79999999997766665555 3466789999999999999999999998 578
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
++|+...|.
T Consensus 260 rpiklRkS~ 268 (290)
T KOG0226|consen 260 RPIKLRKSE 268 (290)
T ss_pred chhHhhhhh
Confidence 998887655
No 147
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=9.1e-05 Score=68.76 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=61.4
Q ss_pred EEEeecCCCCCCHHH----H--HHHHcccCCeeEEEEEcCC------CC-eEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 140 LASIENMQYAVTLDV----L--HMVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~----L--~~~F~~fG~v~~v~i~~~~------~g-~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
+|||-.++..|-.|+ | .++|.+||+|.+|++-++. .+ .-.||.|.+.|+|.+||.+.+|..++|+
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr-- 193 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR-- 193 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc--
Confidence 477888888887665 3 4789999999999987643 12 1249999999999999999999999999
Q ss_pred ceEEEEeecCC
Q 019429 207 CKLHISYSRHT 217 (341)
Q Consensus 207 ~~l~v~~s~~~ 217 (341)
.|+.+|...+
T Consensus 194 -~lkatYGTTK 203 (480)
T COG5175 194 -VLKATYGTTK 203 (480)
T ss_pred -eEeeecCchH
Confidence 9999998543
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.66 E-value=7.5e-05 Score=75.14 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=60.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
-||.|.++|.|++++- +||-++|..|=.+-+-++++. ...+-|.|.|++.|+|.+|...|+++.| .
T Consensus 866 Gp~V~~~~n~Pf~v~l-~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i---------~ 935 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTL-EDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI---------R 935 (944)
T ss_pred CCeEEEecCCCccccH-HHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc---------c
Confidence 4999999999999999 689999999977766555652 2223499999999999999999999996 5
Q ss_pred CceEEEE
Q 019429 80 PCTLRIT 86 (341)
Q Consensus 80 g~~i~v~ 86 (341)
.++|++.
T Consensus 936 nr~V~l~ 942 (944)
T KOG4307|consen 936 NRVVSLR 942 (944)
T ss_pred ceeEEEE
Confidence 8888765
No 149
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00023 Score=63.91 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCC
Q 019429 54 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 133 (341)
Q Consensus 54 ~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (341)
..-|..|..+|++.- .+++.++|.|+.+.
T Consensus 4 rt~ae~ak~eLd~~~---------~~~~~lr~rfa~~a------------------------------------------ 32 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRF---------PKGRSLRVRFAMHA------------------------------------------ 32 (275)
T ss_pred ccHHHHHHHhcCCCC---------CCCCceEEEeeccc------------------------------------------
Confidence 345788888999976 58999999998753
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC---eEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g---~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
.|+|.||..-++.|.|++.|+.||.|.+.++..+.++ --++|+|.....|.+|+..++---+.
T Consensus 33 ------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 33 ------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred ------eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 1668999999999999999999999999775443321 14899999999999999988644433
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.48 E-value=0.00014 Score=57.82 Aligned_cols=57 Identities=25% Similarity=0.206 Sum_probs=36.9
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 67 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~ 67 (341)
|.+.++..+++- ++|+++|+.||.|.=|.+.++. ..|+|.|.+.++|++|++.+.-.
T Consensus 4 l~~~g~~~~~~r-e~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 4 LKFSGLGEPTSR-EDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEE--SS--H-HHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEecCCCCcCH-HHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 567788888885 8999999999999888777643 24999999999999999977755
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.46 E-value=0.00022 Score=49.28 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=38.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHH
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 193 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai 193 (341)
|.|.+.+.... +.+...|..||+|+++.+..+.. ..+|+|.++.+|++|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 45777765544 44555899999999988875444 6999999999999985
No 152
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.39 E-value=0.00045 Score=54.17 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEE-------------EEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcc
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 207 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-------------i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~ 207 (341)
|+|.+.|.. ....+.+.|++||+|++.. ++... .. -.|.|+++.+|.+||+ -||..|.|. +
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-NW-i~I~Y~~~~~A~rAL~-~NG~i~~g~--~ 82 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-NW-IHITYDNPLSAQRALQ-KNGTIFSGS--L 82 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-TE-EEEEESSHHHHHHHHT-TTTEEETTC--E
T ss_pred EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-CE-EEEECCCHHHHHHHHH-hCCeEEcCc--E
Confidence 557788766 5667778899999999875 33332 34 8999999999999997 499988876 4
Q ss_pred eEEEEeecC
Q 019429 208 KLHISYSRH 216 (341)
Q Consensus 208 ~l~v~~s~~ 216 (341)
.+-|.+.+.
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 566777643
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00015 Score=69.39 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCC-----------eEEEEEcCChhHHHHHHHHhc
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGG-----------LQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g-----------~~afV~F~~~~~A~~Ai~~l~ 197 (341)
++++|+ +.|||..-.-+.|.+||+.+|.|..|+|..- .+| -||||+|+..+.|.+|.+.|+
T Consensus 230 ~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 578888 8999999889999999999999999998532 111 269999999999999999997
Q ss_pred CceeCCC
Q 019429 198 GHCIYDG 204 (341)
Q Consensus 198 g~~i~~~ 204 (341)
...-...
T Consensus 308 ~e~~wr~ 314 (484)
T KOG1855|consen 308 PEQNWRM 314 (484)
T ss_pred hhhhhhh
Confidence 5544333
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.30 E-value=0.00046 Score=64.19 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=57.8
Q ss_pred cccCCCCCCCCHH---HH--HHHhhccCcceEEEEeeec------CCce-EEEEeCCHHHHHHHHHHhcCCCcCCcCCCC
Q 019429 9 SRKYLQWQLSASG---ER--AHVFSAFGFVHKITTFEKT------AGFQ-ALVQFSDTETASSAKNALDGRSIPRYLLPE 76 (341)
Q Consensus 9 ~~~NLp~~~t~e~---~L--~~lF~~fG~V~~v~i~~~~------~g~~-aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 76 (341)
+|.-|+....+|+ .| .++|.+||+|.+|++-++. .+-+ .||+|.+.|+|.+||...+|..
T Consensus 118 YVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-------- 189 (480)
T COG5175 118 YVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-------- 189 (480)
T ss_pred EEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc--------
Confidence 4566777877765 23 5699999999999998843 1111 5999999999999999999987
Q ss_pred CCCCceEEEEeccC
Q 019429 77 NMGPCTLRITYSAH 90 (341)
Q Consensus 77 ~~~g~~i~v~~s~~ 90 (341)
+.||-|+..|..-
T Consensus 190 -~DGr~lkatYGTT 202 (480)
T COG5175 190 -LDGRVLKATYGTT 202 (480)
T ss_pred -ccCceEeeecCch
Confidence 4699999998753
No 155
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.25 E-value=0.00057 Score=62.48 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=56.8
Q ss_pred ccccCC--CCCCCC--HHHHHHHhhccCcceEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 8 LSRKYL--QWQLSA--SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 8 ~~~~NL--p~~~t~--e~~L~~lF~~fG~V~~v~i~~~-----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
|-.+|. +-+..+ |+++++-|++||.|.+|+|+.- ..--.-||+|...|+|.+|+-.|||+- +
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy---------F 354 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY---------F 354 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce---------e
Confidence 444554 333333 4678899999999999999871 111138999999999999999999987 4
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
+|+.++..|.+..
T Consensus 355 GGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 355 GGRVVSACFYNLE 367 (378)
T ss_pred cceeeeheeccHH
Confidence 7999998876633
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.00038 Score=48.08 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHH
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 61 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai 61 (341)
+.|.-.+.+.. ++++..|+.||+|.++.+-. .....+|+|.+..+|++|+
T Consensus 4 I~V~Gf~~~~~--~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA--EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH--HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 44555554444 46777999999999988764 3446999999999999985
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.19 E-value=0.00075 Score=61.73 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=52.9
Q ss_pred HHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 152 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 152 ~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
++++++.+++||.|.+|.||..- .-...||+|+..++|.+|+-.|||..+.|+ .++..|-....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr---~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR---VVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---eeeheeccHHh
Confidence 45678899999999999987532 222489999999999999999999999999 88888865443
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.13 E-value=0.00026 Score=67.72 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=55.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----------cC-------CceEEEEeCCHHHHHHHHHHhcC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----------TA-------GFQALVQFSDTETASSAKNALDG 66 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----------~~-------g~~aFVeF~~~e~A~~Ai~~lng 66 (341)
.-|+|-+-|||.+-.. +.|.+||+.+|.|..|+|.+- .+ +-+|||||...+.|.+|.+.||.
T Consensus 230 ~srtivaenLP~Dh~~-enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSY-ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHH-HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 3588889999999988 689999999999999988861 11 22499999999999999999877
Q ss_pred CCcC
Q 019429 67 RSIP 70 (341)
Q Consensus 67 ~~i~ 70 (341)
..-|
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 6654
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.09 E-value=0.04 Score=51.84 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=48.8
Q ss_pred ccccCCCCCCCCHHHHHHHhhccC--cceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG--~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
++|.||-|-+|++ ||.+....-| .+.++++++ +.+++||+|...+..+.++.++.|-.++|
T Consensus 83 ~YvGNL~W~TTD~-DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 83 CYVGNLLWYTTDA-DLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred EEecceeEEeccH-HHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 5899999999995 5666666665 467777776 34677899999999999999998888886
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.06 E-value=0.00033 Score=62.93 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=55.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----------CCe------EEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----------GGL------QALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----------~g~------~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
||+.|+|+..+...|+++|++||.|-+|.+-+.+ +|. -|+|+|.+...|....+.|||..|.|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 5599999999999999999999999999874311 111 389999999999999999999999987
No 161
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.04 E-value=0.0054 Score=47.83 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=55.5
Q ss_pred eecCCCCCCHHHHHHHHcc--cCCeeEEEEE-----cCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCC-cceEEEEee
Q 019429 143 IENMQYAVTLDVLHMVFSA--FGPVQKIAMF-----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS 214 (341)
Q Consensus 143 v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~-----~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~-~~~l~v~~s 214 (341)
|.|+|...|.++|.+++.. .|...=+.+. ..+.|+ |||.|.+.+.|.+-.+.++|..+.... .....|+||
T Consensus 6 irNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GY-AFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 6 IRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGY-AFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYA 84 (97)
T ss_pred EecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEE-EEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehh
Confidence 8999999999999998865 3444433332 123565 999999999999999999999986321 236788888
Q ss_pred cCC
Q 019429 215 RHT 217 (341)
Q Consensus 215 ~~~ 217 (341)
+-+
T Consensus 85 riQ 87 (97)
T PF04059_consen 85 RIQ 87 (97)
T ss_pred Hhh
Confidence 654
No 162
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.03 E-value=0.00041 Score=65.71 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=109.1
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 77 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 77 (341)
+.|-|.||...++. |.+..||.-.|+|.++.++.. ..+ .|||.|.|...+..|.. |.+..+
T Consensus 8 ~vIqvanispsat~-dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sR-tcyVkf~d~~sv~vaQh-Ltntvf-------- 76 (479)
T KOG4676|consen 8 GVIQVANISPSATK-DQMQTLFGNLGKIPELRLYPNVDDSKIPVISR-TCYVKFLDSQSVTVAQH-LTNTVF-------- 76 (479)
T ss_pred ceeeecccCchhhH-HHHHHHHhhccccccccccCCCCCccCcceee-eEEEeccCCcceeHHhh-hcccee--------
Confidence 46889999999998 789999999999999988861 123 49999999999998875 555553
Q ss_pred CCCceEEE-EeccCC---c-cccc----ccCccCcCCCCCCCCCCCC-ccCccC-----CCccc--CCCCCCCCCCcEEE
Q 019429 78 MGPCTLRI-TYSAHT---D-LSVK----FQSHRSRDYTNPYLPVAPS-AIDASG-----QLSVG--LDGKKLEPESNVLL 140 (341)
Q Consensus 78 ~~g~~i~v-~~s~~~---~-l~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~--~~~~~~~~~s~vl~ 140 (341)
-++.|.| =|.... + .... ........+.+......+. .+.+.. .+.+. .+....+....++.
T Consensus 77 -vdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~ 155 (479)
T KOG4676|consen 77 -VDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTRE 155 (479)
T ss_pred -eeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhh
Confidence 2555444 333311 1 0000 0000000000000000000 001100 11110 11111112234444
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
|.+|...+..+++-++|..+|+|....+-.+.+...|-|+|....+...|+.. +|..+.
T Consensus 156 --v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 156 --VQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred --hhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 89999999999999999999999877665444333577999999999999874 565543
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.01 E-value=0.003 Score=52.60 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCcEEEEEeec--CCC-CCCHH----HHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 134 PESNVLLASIEN--MQY-AVTLD----VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 134 ~~s~vl~v~v~n--l~~-~vt~~----~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
|+..++.|++.+ .+. ..-++ +|.+.|..||+|+=|++... .-+|.|.+-++|.+|++ |+|.+|.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~-- 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR-- 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE--
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE--
Confidence 456667777776 111 12233 67788999999998877752 38999999999999986 899999999
Q ss_pred ceEEEEeecCC
Q 019429 207 CKLHISYSRHT 217 (341)
Q Consensus 207 ~~l~v~~s~~~ 217 (341)
.|+|++..+.
T Consensus 98 -~l~i~LKtpd 107 (146)
T PF08952_consen 98 -TLKIRLKTPD 107 (146)
T ss_dssp -EEEEEE----
T ss_pred -EEEEEeCCcc
Confidence 9999986554
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0011 Score=65.56 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=49.0
Q ss_pred HHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEe
Q 019429 22 ERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 87 (341)
Q Consensus 22 ~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~ 87 (341)
.|..+|+++|+|+++.+.- +..+++.|+||++..+|+.|++.|||+.| .+..+..|..
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l--------dknHtf~v~~ 140 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL--------DKNHTFFVRL 140 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee--------cccceEEeeh
Confidence 5678999999999998763 33556899999999999999999999998 4778887764
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.95 E-value=0.00048 Score=61.92 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=53.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----------ecCCce------EEEEeCCHHHHHHHHHHhcCCCc
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----------KTAGFQ------ALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----------~~~g~~------aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
.++++|||....- ..||++++.||+|-.|.+-+ +.++++ |+|||.+...|.+..+.|||..|
T Consensus 76 VvylS~IPp~m~~-~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 76 VVYLSNIPPYMDP-VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred EEEeccCCCccCH-HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3689999999998 79999999999999998775 112222 99999999999999999999997
No 166
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=4.7e-05 Score=78.23 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=105.3
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
|...+.|+..+...++.++..|..+|.|.+|.+.++ ....++++++....+|+.|.. ..+.. +.++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~---------~a~~ 641 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGA---------LANR 641 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccc---------cCCc
Confidence 455677887777776788999999999999988762 223358999999999999885 44444 3566
Q ss_pred eEEEEeccCCc--ccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 82 TLRITYSAHTD--LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 82 ~i~v~~s~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
.+.+..+..+. ...+......| .... +++.||+..+.+++|+..|
T Consensus 642 ~~av~~ad~~~~~~~~kvs~n~~R-------------------------------~~~~--~fvsnl~~~~~~~dl~~~~ 688 (881)
T KOG0128|consen 642 SAAVGLADAEEKEENFKVSPNEIR-------------------------------DLIK--IFVSNLSPKMSEEDLSERF 688 (881)
T ss_pred cccCCCCCchhhhhccCcCchHHH-------------------------------HHHH--HHHhhcchhhcCchhhhhc
Confidence 66666655432 11000000000 0122 4489999999999999999
Q ss_pred cccCCeeEEEEE----cC-CCCeEEEEEcCChhHHHHHHHHhcCce
Q 019429 160 SAFGPVQKIAMF----DK-NGGLQALIQYPDVQTAVVAKEALEGHC 200 (341)
Q Consensus 160 ~~fG~v~~v~i~----~~-~~g~~afV~F~~~~~A~~Ai~~l~g~~ 200 (341)
+.+|.+..|.+. ++ -+|. |+|+|.+.++|.+||....+..
T Consensus 689 ~~~~~~e~vqi~~h~n~~~~rG~-~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 689 SPSGTIEVVQIVIHKNEKRFRGK-AYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred CccchhhhHHHHHHhhccccccc-eeeEeecCCchhhhhhhhhhhh
Confidence 999988777643 11 2676 9999999999999998665543
No 167
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.92 E-value=0.002 Score=65.21 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=57.4
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 137 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 137 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+||. +.|+|.+|+.|||.++|..|-.+-.-.+.+.+ .|- |.|-|++.++|..|...|+++.|..+ +|+|
T Consensus 868 ~V~~--~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe-~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l 941 (944)
T KOG4307|consen 868 RVLS--CNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGE-CMVAFESQEEARRASMDLDGQKIRNR---VVSL 941 (944)
T ss_pred eEEE--ecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccc-eeEeecCHHHHHhhhhccccCcccce---eEEE
Confidence 4666 89999999999999999999765543333222 344 99999999999999999999999999 7776
Q ss_pred E
Q 019429 212 S 212 (341)
Q Consensus 212 ~ 212 (341)
.
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 5
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.91 E-value=0.00051 Score=61.80 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=48.5
Q ss_pred HHHHHHhh-ccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCC
Q 019429 21 GERAHVFS-AFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 21 ~~L~~lF~-~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
|+|...|+ +||+|.++++-+ ...| -++|.|...|+|++|++.|||..+ .|++|...++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~---------~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWY---------NGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccc---------cCCcceeeecCcC
Confidence 34555555 899999985544 2234 499999999999999999999984 7999999987744
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.79 E-value=0.0012 Score=62.14 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=64.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE--------EEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA--------MFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~--------i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
+.+..|+|-+|+..+++++|.+.|.+.|.|.+=+ |.+. .+|- |.|.|+|..+|+.|+..+++..+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGe-atvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGE-ATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCc-eeeeecChhhhhhhhhhhcccccc
Confidence 4445566899999999999999999999886432 2221 1455 999999999999999999999999
Q ss_pred CCCcceEEEEeecCCC
Q 019429 203 DGGFCKLHISYSRHTD 218 (341)
Q Consensus 203 ~~~~~~l~v~~s~~~~ 218 (341)
+. +|+|.++....
T Consensus 143 gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN---TIKVSLAERRT 155 (351)
T ss_pred CC---Cchhhhhhhcc
Confidence 97 99999986654
No 170
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.68 E-value=0.0023 Score=63.78 Aligned_cols=87 Identities=25% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
..+++|+ |.||--..|.-+|+.|..+ .|.|+...|-+-+. -|||.|.+.++|.....+|||..+-..+...|.+.
T Consensus 442 ~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEe--eecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 4578888 8999889999999999995 55565554433232 49999999999999999999999977767799999
Q ss_pred eecCCCCccccC
Q 019429 213 YSRHTDLSIKVN 224 (341)
Q Consensus 213 ~s~~~~~~~~~~ 224 (341)
|....++....+
T Consensus 518 f~~~deld~hr~ 529 (718)
T KOG2416|consen 518 FVRADELDKHRN 529 (718)
T ss_pred ecchhHHHHHhc
Confidence 998887764443
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.55 E-value=0.017 Score=59.52 Aligned_cols=9 Identities=56% Similarity=1.239 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 019429 330 GAMPPPRPD 338 (341)
Q Consensus 330 ~~~Pp~~~~ 338 (341)
|.+|||++.
T Consensus 593 Gg~ppPP~~ 601 (1102)
T KOG1924|consen 593 GGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCC
Confidence 333444333
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.35 E-value=0.0022 Score=57.78 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=49.2
Q ss_pred HHHHHHHc-ccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 153 DVLHMVFS-AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 153 ~~L~~~F~-~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|+|...|+ +||+|+++++=..- .| .++|+|...++|++|++.|||..+.|+ +|...|+.-++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcCc
Confidence 44555566 89999998653211 34 399999999999999999999999999 99999986554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.0062 Score=60.42 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=53.9
Q ss_pred CcEEEEEeecCCCCCCHH-------HHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 136 SNVLLASIENMQYAVTLD-------VLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~-------~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
.++++ |.|.| -|-.+ .|..+|+++|+|+++.+... ..|+ .|++|++..+|..|++.|||+.|...
T Consensus 58 D~vVv--v~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~-lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVV--VDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGY-LFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEE--ECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeE-EEEEecChhhHHHHHHhcccceeccc
Confidence 44555 78885 34333 35678999999999988632 2455 99999999999999999999999765
Q ss_pred CcceEEEE
Q 019429 205 GFCKLHIS 212 (341)
Q Consensus 205 ~~~~l~v~ 212 (341)
.++.|.
T Consensus 134 --Htf~v~ 139 (698)
T KOG2314|consen 134 --HTFFVR 139 (698)
T ss_pred --ceEEee
Confidence 466654
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.33 E-value=0.01 Score=49.48 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCC
Q 019429 22 ERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 22 ~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
+|.+.|+.||+|.=|++.. ..-+|+|.+-++|.+|+. |+|.+| .|+.|+|+...+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v---------~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQV---------NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEE---------TTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEE---------CCEEEEEEeCCcc
Confidence 6888999999988777664 249999999999999995 999995 7999999976544
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.30 E-value=0.018 Score=47.58 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=49.4
Q ss_pred ecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 144 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 144 ~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.|+...-+...+..-.+.||+|.+|....+. .|.|.|.|..+|.+|+.+.+. ..-|. .++++|.
T Consensus 96 knm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgt---m~qCsWq 159 (166)
T PF15023_consen 96 KNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGT---MFQCSWQ 159 (166)
T ss_pred hcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCc---eEEeecc
Confidence 5665444445566678999999999877554 599999999999999999987 34555 7888874
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.19 E-value=0.019 Score=47.47 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=53.4
Q ss_pred cccccCCCCCCCCHHHHHH---HhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 7 PLSRKYLQWQLSASGERAH---VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~---lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
+|-+|=|.......+||++ ..+.||+|.+|...- +-.|.|.|+|..+|-+|+.++..+. .|.-+
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~----------pgtm~ 154 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRA----------PGTMF 154 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCC----------CCceE
Confidence 4556666666555567766 467799999997763 2349999999999999999999854 48888
Q ss_pred EEEecc
Q 019429 84 RITYSA 89 (341)
Q Consensus 84 ~v~~s~ 89 (341)
+|+|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888743
No 177
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.03 E-value=0.019 Score=50.14 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=48.8
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc--CceeCCCCcceEEEEeecCCCC
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~--g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
-..+.|+++|..|+.+.....+++=+ ...|.|.+.++|.+|...|+ +..+.|. .|+|-|+.....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence 35689999999999999998887665 59999999999999999999 9999998 999999955443
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.018 Score=53.20 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=50.0
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
-+|+|.+.+ .-....|.++|++||+|++++.. .++.+ -+|.|.++.+|.+||.. ||..|.+.
T Consensus 198 ~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~-~ngNw-MhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP-SNGNW-MHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred ceEEEeccC-ccchhHHHHHHHhhCeeeeeecC-CCCce-EEEEecchhHHHHhhhh-cCeeeccc
Confidence 467888885 44556788899999999998877 44445 89999999999999975 88887764
No 179
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.98 E-value=0.0049 Score=63.74 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=59.3
Q ss_pred ccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEecc
Q 019429 10 RKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 89 (341)
Q Consensus 10 ~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~ 89 (341)
..|+.-..++ ..|..+|+.||+|.+.+.++.- ..|.|+|.+.|.|..|.++|+|+++. .-|-+.+|.+++
T Consensus 303 ~~nn~v~~tS-ssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs-------~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 303 LENNAVNLTS-SSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVS-------VTGAPSRVSFAK 372 (1007)
T ss_pred hhcccccchH-HHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCccc-------ccCCceeEEecc
Confidence 3444445555 6899999999999999988733 35999999999999999999999986 678899999987
Q ss_pred C
Q 019429 90 H 90 (341)
Q Consensus 90 ~ 90 (341)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 180
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.93 E-value=0.0039 Score=58.32 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=61.8
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+.+++.||+..++. ++|+..|..+|.|+.|++... ...++|+|+|.+..++..|+.. +...| .++
T Consensus 186 ~~~~~~~~~f~~~~-d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~---------~~~ 254 (285)
T KOG4210|consen 186 TIFFVGELDFSLTR-DDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI---------GGR 254 (285)
T ss_pred cceeecccccccch-HHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc---------cCc
Confidence 44569999999988 899999999999999988762 2334699999999999999987 66664 689
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
++++.+...+
T Consensus 255 ~~~~~~~~~~ 264 (285)
T KOG4210|consen 255 PLRLEEDEPR 264 (285)
T ss_pred ccccccCCCC
Confidence 9999987754
No 181
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.70 E-value=0.0072 Score=62.57 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=61.8
Q ss_pred eecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 143 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 143 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
+.|..-..+-..|..+|+.||.|..++.++.-+ .|.|+|.+.+.|..|+++|+|.++.-- .-+.+|.|||.-..
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecccccc
Confidence 455556778888999999999999999887665 799999999999999999999997532 12899999987653
No 182
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.50 E-value=0.023 Score=54.17 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=49.5
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-------CeEEEEEcCChhHHHHHHHHhcCcee
Q 019429 138 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCI 201 (341)
Q Consensus 138 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-------g~~afV~F~~~~~A~~Ai~~l~g~~i 201 (341)
+|. |.|+.+..|.|+++.||...|+|..+.++..-+ .-.|||.|.|..++..|....|-..|
T Consensus 9 vIq--vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv 77 (479)
T KOG4676|consen 9 VIQ--VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV 77 (479)
T ss_pred eee--ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee
Confidence 555 899999999999999999999999999875210 01599999999999998654444444
No 183
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.43 E-value=0.024 Score=49.53 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhc--CCCcCCcCCCCCCCCceEEEEeccCCc
Q 019429 20 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSAHTD 92 (341)
Q Consensus 20 e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~~~~~g~~i~v~~s~~~~ 92 (341)
.+.|+++|+.|+.+..+..+++= + ...|.|.+.++|.+|...|+ +..+ .|..++|.|++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF-r-Ri~v~f~~~~~A~~~r~~l~~~~~~~---------~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF-R-RIRVVFESPESAQRARQLLHWDGTSF---------NGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT-T-EEEEE-SSTTHHHHHHHTST--TSEE---------TTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCCC-C-EEEEEeCCHHHHHHHHHHhccccccc---------CCCceEEEEccccc
Confidence 46899999999999999888742 2 39999999999999999999 7774 68899999986443
No 184
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.41 E-value=0.014 Score=54.99 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=59.8
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~--------v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
++++-.|+-.++. ++|.++|.++|.|.. |.|.+ ...++-|.|+|.|.-.|+.||+-++++.+
T Consensus 68 ti~v~g~~d~~~~-~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf----- 141 (351)
T KOG1995|consen 68 TIFVWGCPDSVCE-NDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF----- 141 (351)
T ss_pred cceeeccCccchH-HHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-----
Confidence 5788889888877 799999999999842 22332 12344599999999999999999999995
Q ss_pred CCCCCCceEEEEeccCC
Q 019429 75 PENMGPCTLRITYSAHT 91 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~~ 91 (341)
.+.+|+|.++..+
T Consensus 142 ----~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 ----CGNTIKVSLAERR 154 (351)
T ss_pred ----cCCCchhhhhhhc
Confidence 5799999887744
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.20 E-value=0.076 Score=39.97 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=41.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 198 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g 198 (341)
..|.+|+ .|.+.-..+|.++|+.||.|.---| .+ . .|||...+++.|..|+..+..
T Consensus 9 dHVFhlt---FPkeWK~~DI~qlFspfG~I~VsWi-~d--T-SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT---FPKEWKTSDIYQLFSPFGQIYVSWI-ND--T-SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE-----TT--HHHHHHHCCCCCCEEEEEE-CT--T-EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe---CchHhhhhhHHHHhccCCcEEEEEE-cC--C-cEEEEeecHHHHHHHHHHhcc
Confidence 4555533 7889999999999999999864334 32 2 599999999999999999874
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.97 E-value=0.11 Score=37.04 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=41.4
Q ss_pred EEeecCCCCCCHHHHHHHHccc---CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHh
Q 019429 141 ASIENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 196 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~f---G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l 196 (341)
|.|.++ .+++.++++..|..| ....+|.-..+. .|=|.|.|.+.|.+|+.+|
T Consensus 8 vhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 337777 478999999999999 235577766655 4999999999999999875
No 187
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.92 E-value=0.079 Score=41.56 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCcceEEE-Eee----------ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEec
Q 019429 20 SGERAHVFSAFGFVHKIT-TFE----------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 88 (341)
Q Consensus 20 e~~L~~lF~~fG~V~~v~-i~~----------~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s 88 (341)
...+.+.|++||+|.+.. +.+ ...+..--|+|.+..+|.+|+. -||..|- +..-+-|.+.
T Consensus 19 ~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~--------g~~mvGV~~~ 89 (100)
T PF05172_consen 19 SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS--------GSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET--------TCEEEEEEE-
T ss_pred HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc--------CcEEEEEEEc
Confidence 357888999999998875 111 1244568899999999999995 7887751 3345557766
Q ss_pred c
Q 019429 89 A 89 (341)
Q Consensus 89 ~ 89 (341)
+
T Consensus 90 ~ 90 (100)
T PF05172_consen 90 D 90 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.89 E-value=0.043 Score=41.29 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019429 13 LQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 66 (341)
Q Consensus 13 Lp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng 66 (341)
.|.+... .||.+||+.||.|.=--|-. ..|||...+.+.|..|+..++-
T Consensus 16 FPkeWK~-~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 16 FPKEWKT-SDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --TT--H-HHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred CchHhhh-hhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 6777777 68999999999987555432 3599999999999999998874
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.38 E-value=0.02 Score=53.66 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=57.4
Q ss_pred cccCCCCCCCCHHHHHH--HhhccCcceEEEEeeec-----CCc--eEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 9 SRKYLQWQLSASGERAH--VFSAFGFVHKITTFEKT-----AGF--QALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~--lF~~fG~V~~v~i~~~~-----~g~--~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
++.-|+.+..+|+.|+. .|.+||.|.+|++.++. .++ -++|+|...|+|.+||...+|.. ..
T Consensus 81 yvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~---------~d 151 (327)
T KOG2068|consen 81 YVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV---------DD 151 (327)
T ss_pred hhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH---------hh
Confidence 44556777788777765 89999999999988733 111 28999999999999999999977 46
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
++.+++.+...+
T Consensus 152 g~~lka~~gttk 163 (327)
T KOG2068|consen 152 GRALKASLGTTK 163 (327)
T ss_pred hhhhHHhhCCCc
Confidence 888887776543
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.28 E-value=0.017 Score=54.14 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=56.6
Q ss_pred EEeecCCCCCC-HHHHH--HHHcccCCeeEEEEEcCC------CC-eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 141 ASIENMQYAVT-LDVLH--MVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 141 v~v~nl~~~vt-~~~L~--~~F~~fG~v~~v~i~~~~------~g-~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
|+|-.|+..+. ++.|. +.|.+||.|.+|++..+. .+ ..++|.|+..++|..||...+|..+.++ .|+
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~lk 156 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---ALK 156 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hhH
Confidence 55666665554 44444 579999999999987643 11 2489999999999999999999999998 788
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
.+|...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8777544
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.27 E-value=0.027 Score=56.36 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=60.5
Q ss_pred cccccCCCCCCCCHHHHHHHhh-ccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFS-AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~-~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
.|+|.||=.-.|. ..|+.|.. ..|.|.+..|.+-+ ..|||.|.+.++|...+.+|||...+ ..+.+-|-+
T Consensus 446 vlhI~nLvRPFTl-gQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP------~sNPK~L~a 516 (718)
T KOG2416|consen 446 VLHIDNLVRPFTL-GQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP------PSNPKHLIA 516 (718)
T ss_pred eEeeecccccchH-HHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC------CCCCceeEe
Confidence 5889999555555 78999888 56778777544422 24999999999999999999998764 257888999
Q ss_pred EeccCCccc
Q 019429 86 TYSAHTDLS 94 (341)
Q Consensus 86 ~~s~~~~l~ 94 (341)
.|....+|.
T Consensus 517 df~~~deld 525 (718)
T KOG2416|consen 517 DFVRADELD 525 (718)
T ss_pred eecchhHHH
Confidence 998755443
No 192
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.01 E-value=0.04 Score=53.78 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 151 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 151 t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|.++|...|..||+|..|.+--... .|.|.|.+..+|-+|.. .++..|.++ .|+|.|-++..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCc---eeEEEEecCCc
Confidence 6789999999999999988754332 49999999999977753 689999999 99999977644
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.81 E-value=0.043 Score=49.64 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=50.2
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
-.|+|+||..-++. |.|++-|+.||+|...++.- ....+-++|+|..+-.|.+|.+.++-.-+
T Consensus 32 a~l~V~nl~~~~sn-dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASN-DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhh-HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 46899999999998 78999999999998754443 22333499999999999999998854443
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.54 E-value=0.49 Score=37.81 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHhhccCc-ceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcC
Q 019429 14 QWQLSASGERAHVFSAFGF-VHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIP 70 (341)
Q Consensus 14 p~~~t~e~~L~~lF~~fG~-V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~ 70 (341)
|...+.-++|..+.+.+=+ |..++|++. .+++.+++.|.+.++|..-.+.+||+.+-
T Consensus 21 p~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 21 PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344443788888888854 556677772 34556999999999999999999999864
No 195
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.43 E-value=0.02 Score=59.87 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=63.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CC-eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g-~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.+.+|+ ++||+..+++.+|+..|..+|.|.+|.|-.-. .+ -+|||.|.+...|-.|+..+.+..|... .+++
T Consensus 371 atrTLf--~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~~r~ 445 (975)
T KOG0112|consen 371 ATRTLF--LGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---THRI 445 (975)
T ss_pred hhhhhh--hcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC---cccc
Confidence 355677 99999999999999999999999999885432 11 2599999999999999999999999887 6666
Q ss_pred Eeec
Q 019429 212 SYSR 215 (341)
Q Consensus 212 ~~s~ 215 (341)
.|..
T Consensus 446 glG~ 449 (975)
T KOG0112|consen 446 GLGQ 449 (975)
T ss_pred cccc
Confidence 6653
No 196
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.17 E-value=0.089 Score=50.77 Aligned_cols=73 Identities=26% Similarity=0.227 Sum_probs=55.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCce-eCCCCcceEEEEeecCCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~-i~~~~~~~l~v~~s~~~~ 218 (341)
++++||.+.++.++|..+|...-.-..=.++-+. | ++||.+.|..-|.+|++.++|.. +.|+ .+.+.++-++.
T Consensus 4 lyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-g-yafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~kk 77 (584)
T KOG2193|consen 4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-G-YAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVPKK 77 (584)
T ss_pred ccccccCCCCChHHHHHHhccccCCCCcceeeec-c-eeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhhHH
Confidence 5699999999999999999875211111233333 4 59999999999999999999864 6677 89998885554
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.95 E-value=0.34 Score=34.98 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 149 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 149 ~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.++.++++..+..|+- .+ |...+.| =||.|.|.++|+++....+|..++.- .|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~y---~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFTY---RMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCCE--EEEEECChHHHHHHHHhcCCCEEEEE---EEEe
Confidence 6789999999999974 23 3344444 38999999999999999999998876 5543
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.20 E-value=0.36 Score=44.80 Aligned_cols=46 Identities=26% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 21 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
..|..+|++||+|++++.- .++..-.|.|.+..+|++||. -||+-|
T Consensus 211 s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii 256 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTII 256 (350)
T ss_pred hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeee
Confidence 4678899999999999876 467789999999999999996 677765
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.79 E-value=1.3 Score=35.41 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=47.7
Q ss_pred eecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC--CeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 143 IENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 143 v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~--g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
+...++.++.++|..+.+.+- .|..++|.++.. -+.++++|.+.++|..-.+..||..+..
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 567777888888887777766 445566776542 3579999999999999999999998743
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.30 E-value=0.14 Score=50.17 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=58.5
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
++|-+.-.+....+-++|..-|.+||+|.+|.+--. .- .|.|+|.+..+|-+|.. .++.. ++++.|+|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~-~a~vTF~t~aeag~a~~-s~~av---------lnnr~iKl 440 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SL-HAVVTFKTRAEAGEAYA-SHGAV---------LNNRFIKL 440 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hh-hheeeeeccccccchhc-cccce---------ecCceeEE
Confidence 556666778888888999999999999999965432 22 39999999999977763 56666 57999999
Q ss_pred EeccCC
Q 019429 86 TYSAHT 91 (341)
Q Consensus 86 ~~s~~~ 91 (341)
.|-+..
T Consensus 441 ~whnps 446 (526)
T KOG2135|consen 441 FWHNPS 446 (526)
T ss_pred EEecCC
Confidence 997764
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.13 E-value=1.1 Score=32.24 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=44.2
Q ss_pred cccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcC
Q 019429 9 SRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP 70 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~ 70 (341)
..+.+|..-++-++++..+..|+- .+|+.- ..| =||.|.+.++|+++.+..||+.++
T Consensus 3 ~~~~vp~~~~~v~d~K~~Lr~y~~-~~I~~d--~tG--fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 3 SHKFVPVHGVTVEDFKKRLRKYRW-DRIRDD--RTG--FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CcccCCCCCccHHHHHHHHhcCCc-ceEEec--CCE--EEEEECChHHHHHHHHhcCCCEEE
Confidence 345667777777899999999975 344432 244 689999999999999999998864
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.78 E-value=1.1 Score=45.00 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCCCCcEEEEEeecCCCCCCHHHHHHHHcc--cCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc
Q 019429 131 KLEPESNVLLASIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 131 ~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~ 197 (341)
...+..+.+.|.+.-++++.-+|+++.||+- +-+++++.+--.+ .-||.|++.++|.+|.+.|.
T Consensus 168 kVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 168 KVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHH
Confidence 3334444445558999999999999999965 6788887765544 38999999999999987775
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=0.75 Score=46.30 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=60.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhcc----CcceEEEEee--------------ec-----------------------
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAF----GFVHKITTFE--------------KT----------------------- 42 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~f----G~V~~v~i~~--------------~~----------------------- 42 (341)
+-|+|-|-|+.|+...-+||.-+|+.| |.|.+|.|.. +.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 347899999999988878999999988 6899998774 01
Q ss_pred --------------CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEe
Q 019429 43 --------------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 87 (341)
Q Consensus 43 --------------~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~ 87 (341)
+-.||-|+|.++++|.+..+.++|.++- -.+..|.+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE-------sS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE-------SSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec-------cccceeeeee
Confidence 1235999999999999999999999864 2455555554
No 204
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.47 E-value=1.1 Score=31.79 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=37.4
Q ss_pred ccccCCCCCCCCHHHHHHHhhcc---CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHh
Q 019429 8 LSRKYLQWQLSASGERAHVFSAF---GFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 64 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~f---G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~l 64 (341)
|+++-+.. .++ ++++.+|..| ....+|..+.. . -|=|.|.|.+.|.+|+..|
T Consensus 8 vhirGvd~-lsT-~dI~~y~~~y~~~~~~~~IEWIdD--t-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRGVDE-LST-DDIKAYFSEYFDEEGPFRIEWIDD--T-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEcCCC-CCH-HHHHHHHHHhcccCCCceEEEecC--C-cEEEEECCHHHHHHHHHcC
Confidence 55666533 555 6899999999 12456655542 2 3999999999999999765
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.46 E-value=0.63 Score=40.40 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=50.9
Q ss_pred EEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEc---CC----CC--eEEEEEcCChhHHHHHHHHhcCceeCCC-C-cc
Q 019429 140 LASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFD---KN----GG--LQALIQYPDVQTAVVAKEALEGHCIYDG-G-FC 207 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~---~~----~g--~~afV~F~~~~~A~~Ai~~l~g~~i~~~-~-~~ 207 (341)
.|.|.+||+++|++++.+..+. ++.......+. .. .. ..|+|.|.+.++...-.+.++|+.+.+. | ..
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~ 88 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEY 88 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EE
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCc
Confidence 3449999999999999998887 77663222221 11 01 2499999999999999999999877543 1 23
Q ss_pred eEEEEeecCCCC
Q 019429 208 KLHISYSRHTDL 219 (341)
Q Consensus 208 ~l~v~~s~~~~~ 219 (341)
...|.||--+.+
T Consensus 89 ~~~VE~Apyqk~ 100 (176)
T PF03467_consen 89 PAVVEFAPYQKV 100 (176)
T ss_dssp EEEEEE-SS---
T ss_pred ceeEEEcchhcc
Confidence 677888865443
No 206
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=89.33 E-value=7 Score=35.27 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q 019429 297 MGNHPYMPPGS 307 (341)
Q Consensus 297 ~~~~~~~p~g~ 307 (341)
++++-|||++.
T Consensus 169 ~~pgv~mp~~g 179 (341)
T KOG2893|consen 169 PAPGVYMPPPG 179 (341)
T ss_pred CCCccccCCCC
Confidence 34444444333
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.86 E-value=2.4 Score=31.05 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCee-----EEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFGPVQ-----KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG~v~-----~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
|+|.++.. ..++..+|..++..-+.|. +|.|+.. ++||+=... .|..+++.|++..+.|+ .|+|+.
T Consensus 3 l~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk---~v~ve~ 73 (74)
T PF03880_consen 3 LFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGK---KVRVER 73 (74)
T ss_dssp EEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EEE
T ss_pred EEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCe---eEEEEE
Confidence 56656655 5888889888888876444 5555542 488887665 89999999999999999 888875
Q ss_pred e
Q 019429 214 S 214 (341)
Q Consensus 214 s 214 (341)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 3
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=2.3 Score=42.97 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=59.5
Q ss_pred CCcEEEEEeecCCC-CCCHHHHHHHHccc----CCeeEEEEEcC--------------C---------------------
Q 019429 135 ESNVLLASIENMQY-AVTLDVLHMVFSAF----GPVQKIAMFDK--------------N--------------------- 174 (341)
Q Consensus 135 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~f----G~v~~v~i~~~--------------~--------------------- 174 (341)
.++.|. |.|+++ .|..++|.-+|+.| |.|.+|.|... .
T Consensus 173 ~T~RLA--VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 173 ETKRLA--VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccceee--EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455666 778875 77889998887664 48999988421 0
Q ss_pred ----------------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 175 ----------------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 175 ----------------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+=++|.|+|++.+.|.+..+.++|.++... +..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeec
Confidence 013699999999999999999999998877 667777774
No 209
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=87.88 E-value=0.88 Score=45.21 Aligned_cols=58 Identities=24% Similarity=0.115 Sum_probs=48.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhh-ccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHH
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFS-AFGFVHKITTFE----KTAGFQALVQFSDTETASSAKN 62 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~-~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~ 62 (341)
+=|++||.-||.-.+. ++|..+|+ .||-|.-|-|.. |=.++-|=|+|.+..+=.+||+
T Consensus 369 prrTVFVGgvprpl~A-~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTA-EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchH-HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3489999999999999 68999999 799998775544 2233458999999999999997
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.76 E-value=15 Score=34.21 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=99.2
Q ss_pred eecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec-----------CCceEEEEeCCHHHHHH----HHHHhcCC
Q 019429 3 YICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT-----------AGFQALVQFSDTETASS----AKNALDGR 67 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~-----------~g~~aFVeF~~~e~A~~----Ai~~lng~ 67 (341)
|.-|+|-+.|+..+++= -.+-..|..||.|.+|.+++.. ...-..+.|-+++.... .++.|+-.
T Consensus 13 YrTRSLLfeNv~~sidL-h~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDL-HSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred ceeHHHHHhhccccccH-HHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 56789999999866654 3455678999999999988732 11238999999998764 33344443
Q ss_pred CcCCcCCCCCCCCceEEEEeccCCc-ccccccCccCcC--CCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEee
Q 019429 68 SIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRD--YTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 144 (341)
Q Consensus 68 ~i~~~~~~~~~~g~~i~v~~s~~~~-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~ 144 (341)
+- .++...|.++|-.-+- .....+.+..+- +..+.+-.. .+. ....+.|.|-..
T Consensus 92 K~-------~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~--i~~--------------~gATRSl~IeF~ 148 (309)
T PF10567_consen 92 KT-------KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYN--IIN--------------RGATRSLAIEFK 148 (309)
T ss_pred HH-------hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhhe--eec--------------CCcceEEEEEec
Confidence 32 2678888888765221 111101111110 000000000 000 012455664443
Q ss_pred cCCCCCCHHHHH-HHH---cccC----CeeEEEEEcCC---CC---eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 145 NMQYAVTLDVLH-MVF---SAFG----PVQKIAMFDKN---GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 145 nl~~~vt~~~L~-~~F---~~fG----~v~~v~i~~~~---~g---~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
..++.++|. +.+ ..=+ -|++|.++... +. -+|.++|-+...|...++.|.-....-+ .-+
T Consensus 149 ---~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~---Isk 222 (309)
T PF10567_consen 149 ---DPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLG---ISK 222 (309)
T ss_pred ---CccchhHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccC---cce
Confidence 344344433 221 1122 36666665432 11 1699999999999999988874432222 444
Q ss_pred EEeec
Q 019429 211 ISYSR 215 (341)
Q Consensus 211 v~~s~ 215 (341)
+.|..
T Consensus 223 c~fVs 227 (309)
T PF10567_consen 223 CFFVS 227 (309)
T ss_pred EEEEe
Confidence 55543
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.34 E-value=1.7 Score=33.27 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=16.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHH
Q 019429 136 SNVLLASIENMQYAVTLDVLHMV 158 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~ 158 (341)
.+.++ |.|+|...++|+|++.
T Consensus 52 ~rtVl--vsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 52 KRTVL--VSGIPDVLDEEELRDK 72 (88)
T ss_pred CCEEE--EeCCCCCCChhhheee
Confidence 44555 7899999999999874
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.86 E-value=2.2 Score=41.83 Aligned_cols=65 Identities=12% Similarity=0.228 Sum_probs=51.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhcc-CcceEEEEeeec--CCceEEEEeCCHHHHHHHHHHhcCCCcC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAF-GFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIP 70 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~f-G~V~~v~i~~~~--~g~~aFVeF~~~e~A~~Ai~~lng~~i~ 70 (341)
|+-|.|--+|.-.+. -||..++..| -.|.+|+++|.. +.+.++|.|.+.++|..-.+.+||+.+-
T Consensus 74 ~~mLcilaVP~~mt~-~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTS-HDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccH-HHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 566777778888888 4566666665 568899999832 4455999999999999999999999864
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.28 E-value=3.8 Score=40.22 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=54.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
+..|. |.-+|..+|..+|..+...|= .|..|+|+++. +.+.++|+|.+.++|..-.+.+||..+..
T Consensus 74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 66677 888999999999998876654 67778888755 23679999999999999999999998753
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=81.25 E-value=5 Score=37.33 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=56.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----------CCeEEEEEcCChhHHHHH----HHHhc--C
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----------GGLQALIQYPDVQTAVVA----KEALE--G 198 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----------~g~~afV~F~~~~~A~~A----i~~l~--g 198 (341)
++.|+ +.|+...++...+...|.+||.|+.|.++... ......+.|-+++.+..- ++.|. +
T Consensus 15 TRSLL--feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLL--FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHH--HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 44466 78999999999999999999999999998654 112578999998877642 33333 3
Q ss_pred ceeCCCCcceEEEEeecC
Q 019429 199 HCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 199 ~~i~~~~~~~l~v~~s~~ 216 (341)
+.+... .|+|+|...
T Consensus 93 ~~L~S~---~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVSL 107 (309)
T ss_pred HhcCCc---ceeEEEEEE
Confidence 345555 899998864
No 215
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.99 E-value=2.4 Score=42.70 Aligned_cols=54 Identities=11% Similarity=-0.029 Sum_probs=39.3
Q ss_pred cccCCCCCCCCHHHHHHHhhc--cCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019429 9 SRKYLQWQLSASGERAHVFSA--FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 66 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~lF~~--fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng 66 (341)
.+|-||..+-. |+++.||+. +=++.++.+-- +.+ =||+|++.+||+.|.++|.-
T Consensus 179 ilREIpettp~-e~Vk~lf~~encPk~iscefa~--N~n-WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 179 ILREIPETTPI-EVVKALFKGENCPKVISCEFAH--NDN-WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred EEeecCCCChH-HHHHHHhccCCCCCceeeeeee--cCc-eEEEeecchhHHHHHHHHHH
Confidence 34566655444 789999976 66777776543 222 79999999999999886654
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.01 E-value=1.8 Score=35.97 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=30.0
Q ss_pred EEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCC
Q 019429 138 VLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKN 174 (341)
Q Consensus 138 vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~ 174 (341)
-+.|.|.|||.. .+++.|+.+-+..|++.++..-+.+
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 355778999865 6899999999999999998765443
No 217
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=76.80 E-value=5.5 Score=38.66 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.2
Q ss_pred eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 177 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 177 ~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
++|.|++++.+.+.....+++|.+.... -+.+.+.|.
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfv 295 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFV 295 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccc-cceeeeeec
Confidence 3799999999999999999999998765 456777775
No 218
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=76.34 E-value=1 Score=39.07 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=40.8
Q ss_pred cccccCCCCCCCCHHHHHHHhhc-cCcceEEEEee-----e----cCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 7 PLSRKYLQWQLSASGERAHVFSA-FGFVHKITTFE-----K----TAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~-fG~V~~v~i~~-----~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
-|-||+||...|+ +++++..+. ++.-.+-..+. . ..-..|+|.|.+.+++..-.+.++|..+
T Consensus 9 KvVIR~LPP~Lte-eeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 9 KVVIRRLPPNLTE-EEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp EEEEEEE-TTS-H-HHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred eEEEeCCCCCCCH-HHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4679999999999 577777776 66652211221 1 1112399999999999999999999775
No 219
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.02 E-value=32 Score=34.12 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=10.0
Q ss_pred HHHHHHHcccCCeeE
Q 019429 153 DVLHMVFSAFGPVQK 167 (341)
Q Consensus 153 ~~L~~~F~~fG~v~~ 167 (341)
..|=.||+-||.|..
T Consensus 245 ~~lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 245 TALGQIFEIFGPVKN 259 (483)
T ss_pred ccchhhhhhhcccCC
Confidence 346677888887753
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.93 E-value=6.7 Score=28.64 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHhhccCcc-----eEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEec
Q 019429 21 GERAHVFSAFGFV-----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 88 (341)
Q Consensus 21 ~~L~~lF~~fG~V-----~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s 88 (341)
.+|..++..-+.| -+|.++. .++||+-... .|.++++.|++..+ +|++|+|+.+
T Consensus 16 ~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~-~a~~v~~~l~~~~~---------~gk~v~ve~A 74 (74)
T PF03880_consen 16 RDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEE-VAEKVLEALNGKKI---------KGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT--HHHHHHHHTT--S---------SS----EEE-
T ss_pred HHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHH-HHHHHHHHhcCCCC---------CCeeEEEEEC
Confidence 4555555555444 4566654 3699987655 88999999999985 6999998753
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.20 E-value=0.93 Score=41.67 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCHHHHHHHHcccCCeeEEEEEc----------CCCC-------------eEEEEEcCChhHHHHHHHHhcCceeCCCC-
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFD----------KNGG-------------LQALIQYPDVQTAVVAKEALEGHCIYDGG- 205 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~----------~~~g-------------~~afV~F~~~~~A~~Ai~~l~g~~i~~~~- 205 (341)
-+++.|+..|+.||.|..|.|.- +..| |-|||+|...-.-..|+.+|.|.++.-++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 47899999999999999988641 1111 23678888877778888888887764332
Q ss_pred ----cceEEEEeecC
Q 019429 206 ----FCKLHISYSRH 216 (341)
Q Consensus 206 ----~~~l~v~~s~~ 216 (341)
...++|+|.+.
T Consensus 253 ~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRS 267 (445)
T ss_pred Ccccccccccccchh
Confidence 12566776543
No 222
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=67.03 E-value=3.8 Score=42.09 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
|+|+|+.+.++.+-++.+...+|.|...+... | ||.+|.+...+..|+..|+-..+.++
T Consensus 43 vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----f-gf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 43 VFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----F-GFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred eEecchhhhhhHHHHHHHHhhCCcchhhhhhh----h-cccchhhHHHHHHHHHHhcccCCCcc
Confidence 44899999999999999999999888765443 4 99999999999999999999888887
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.64 E-value=2.1 Score=39.44 Aligned_cols=52 Identities=27% Similarity=0.384 Sum_probs=36.7
Q ss_pred CCHHHHHHHhhccCcceEEEEee----------ecCCc----e---------EEEEeCCHHHHHHHHHHhcCCCc
Q 019429 18 SASGERAHVFSAFGFVHKITTFE----------KTAGF----Q---------ALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 18 t~e~~L~~lF~~fG~V~~v~i~~----------~~~g~----~---------aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
-+|+.|+..|+.||+|..|.|.- +.+|- + |||+|..-.--..|++.|.|.++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 45689999999999998886542 11111 1 66777777777778888888764
No 224
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=62.00 E-value=1.5e+02 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCH
Q 019429 18 SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDT 54 (341)
Q Consensus 18 t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~ 54 (341)
..|..|...|-+-+.|.=|.-...+.-||+|.+|.+.
T Consensus 99 sNE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~ 135 (441)
T KOG1902|consen 99 SNEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSE 135 (441)
T ss_pred ccHHHHHHHHhhcCcEEEEEEecccccchhhhhhcch
Confidence 3567888888888877655544556667899887765
No 225
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=58.70 E-value=1.1e+02 Score=27.75 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=3.0
Q ss_pred CCCCCC
Q 019429 291 SQSMPM 296 (341)
Q Consensus 291 ~~~~p~ 296 (341)
..+||+
T Consensus 172 gv~mp~ 177 (341)
T KOG2893|consen 172 GVYMPP 177 (341)
T ss_pred ccccCC
Confidence 345555
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=57.91 E-value=44 Score=25.24 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=37.7
Q ss_pred cCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCC-eEEEEEcCChhHHHHHHHHh
Q 019429 145 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEAL 196 (341)
Q Consensus 145 nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g-~~afV~F~~~~~A~~Ai~~l 196 (341)
..+...+..++++.++. || +|.+|.......+ --|||.+.+-.+|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34568899999988877 66 7888876544333 15999999998888765443
No 227
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.42 E-value=38 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHhhccCcceEEEEee
Q 019429 21 GERAHVFSAFGFVHKITTFE 40 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~ 40 (341)
+.|-+.|+.=|+|.+|+...
T Consensus 16 nKLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVT 35 (145)
T ss_pred chhhHHhcCCCceEEEEEEe
Confidence 46999999999999997765
No 228
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=55.63 E-value=5.1 Score=41.18 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=49.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
+.||+||.+.+.. +.++.+...+|.|.+....+ |+|.+|.+.+-+.+|+..++-..|
T Consensus 42 ~vfv~~~~~~~s~-~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 42 TVFVGNISYLVSQ-EFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred eeEecchhhhhhH-HHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCC
Confidence 4688999998888 78999999999998876554 699999999999999998887665
No 229
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=55.49 E-value=5 Score=28.97 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019429 21 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 65 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~ln 65 (341)
++|.+.|+.+....+++-+ .+|..|.|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 4788888887777766544 39999999999998887654
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.74 E-value=63 Score=23.98 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=37.0
Q ss_pred ecCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChhHHHHHHHH
Q 019429 144 ENMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 144 ~nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~Ai~~ 195 (341)
...+...+..++++.++. || +|.+|.......++ -|||.+..-..|...-..
T Consensus 19 F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 19 FIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 345668899999988877 56 78888755433231 599999988888776543
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.15 E-value=49 Score=28.82 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=40.0
Q ss_pred HHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc-eEEEEeccCC
Q 019429 23 RAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHT 91 (341)
Q Consensus 23 L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~-~i~v~~s~~~ 91 (341)
...+|..|-+..-..+++ +.+ ..-|.|.+.+.|.+|...+++..+ .|+ .++.-|++..
T Consensus 32 ~~~lFrq~n~~~~fq~lr-sfr-rvRi~f~~p~~a~~a~i~~~~~~f---------~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLR-SFR-RVRINFSNPEAAADARIKLHSTSF---------NGKNELKLYFAQPG 90 (193)
T ss_pred HHhHHhhhCcchHHHHHH-hhc-eeEEeccChhHHHHHHHHhhhccc---------CCCceEEEEEccCC
Confidence 344666555544444443 222 388999999999999999999985 455 7777777643
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=50.82 E-value=17 Score=34.33 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEecc
Q 019429 47 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 89 (341)
Q Consensus 47 aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~ 89 (341)
|||+|++.++|..|.+.+.... .+.++++.+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----------~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----------PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----------CCCceEeeCC
Confidence 7999999999999999777644 4555666554
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.61 E-value=23 Score=34.42 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCc-ceEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKN 62 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~-V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~ 62 (341)
.|.|-++|-+..+ +||..+|+.|++ =.+|..+. +. .||-.|.+...|..|+.
T Consensus 393 VlEIydfp~efkt-eDll~~f~~yq~kgfdIkWvD--dt-halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 393 VLEIYDFPDEFKT-EDLLKAFETYQNKGFDIKWVD--DT-HALAVFSSVNRAAEALT 445 (528)
T ss_pred eeEeccCchhhcc-HHHHHHHHHhhcCCceeEEee--cc-eeEEeecchHHHHHHhh
Confidence 5788899999999 578889999976 34555554 23 59999999999999996
No 234
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=43.36 E-value=93 Score=22.45 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=30.8
Q ss_pred HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019429 21 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 65 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~ln 65 (341)
+++++..+++| +.-..+.-...|...|+-+.+.+.|+++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777888899 444443322226668888889999999988774
No 235
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=42.74 E-value=9.3 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc
Q 019429 153 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 153 ~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~ 197 (341)
+++.+.|..+....+++-+ .+|..|+|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6888888776655544322 49999999999999887653
No 236
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=42.35 E-value=1e+02 Score=23.45 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHhhccC-cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019429 20 SGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 66 (341)
Q Consensus 20 e~~L~~lF~~fG-~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng 66 (341)
.+.++++.+.+| +|.++....+.--+...+|+.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 467888999985 78888777655556699999999999988765554
No 237
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=42.22 E-value=91 Score=22.52 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc
Q 019429 152 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 152 ~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~ 197 (341)
.+++.+....+| +.-..+.....|.+.|+-+.+.+.|.++.+.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 456778889999 555566554334468999999999999888774
No 238
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.17 E-value=25 Score=30.50 Aligned_cols=57 Identities=11% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 155 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 155 L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
..++|..|-+..-..+++..+ ..-|.|.+.+.|..|...++...+.++ ..++.-|+.
T Consensus 32 ~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~yfaQ 88 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGK--NELKLYFAQ 88 (193)
T ss_pred HHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCC--ceEEEEEcc
Confidence 445666554444333444443 377899999999999999999999887 356666654
No 239
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=38.37 E-value=46 Score=31.04 Aligned_cols=48 Identities=6% Similarity=0.094 Sum_probs=34.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHH
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 189 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A 189 (341)
|++.||+-.+-..+|+....+-|.+---.-.....|- ||++|.|...+
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k-~flh~~~~~~~ 380 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGK-CFLHFGNRKGV 380 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcc-eeEecCCccCC
Confidence 6699999999999999988887744321223333454 99999986543
No 240
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.14 E-value=1.8e+02 Score=22.10 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHHHcccC-CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC
Q 019429 152 LDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 198 (341)
Q Consensus 152 ~~~L~~~F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g 198 (341)
.+.++++++..| +++.+......--+...+++.|.+.|.++...+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 455777787776 66666544333224588999999999988876653
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.94 E-value=68 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHhhccCcceEEEEee
Q 019429 21 GERAHVFSAFGFVHKITTFE 40 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~ 40 (341)
++||+.|+..|+|.=+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999997665443
No 242
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=32.41 E-value=5.1e+02 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=14.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCC
Q 019429 47 ALVQFSDTETASSAKNALDGRS 68 (341)
Q Consensus 47 aFVeF~~~e~A~~Ai~~lng~~ 68 (341)
|-+.++|.+.-..-++.|+..+
T Consensus 42 a~lk~KDp~qi~~~m~kldem~ 63 (487)
T KOG4672|consen 42 AVLKYKDPDQITSKMEKLDEME 63 (487)
T ss_pred hhhccCCHHHHHHHHHhhcccc
Confidence 6666777777776666666544
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.75 E-value=50 Score=31.05 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=26.9
Q ss_pred EEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 179 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 179 afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|||.|++..+|..|++.+...+. + .++++.|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~---~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--N---SWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--C---CceEeeCCCcc
Confidence 79999999999999998776543 3 56777765443
No 244
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=92 Score=30.51 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=41.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChhHHHHHHHH
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~ 195 (341)
-+||- |.+.+...-.++|..+|+.|++ =.+|+-+.+. .||-.|.+...|..|+..
T Consensus 391 pHVlE--Iydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLE--IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeE--eccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 35666 7788888888889999999984 2344444433 499999999999999864
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.37 E-value=1.8e+02 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChhHHHHH
Q 019429 146 MQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVA 192 (341)
Q Consensus 146 l~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~A 192 (341)
.+...+..++++.++. |+ +|.+|......+|. -|||.+....+|...
T Consensus 89 Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 89 VDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 3458899999988876 65 77777755444342 599999877766543
No 246
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=29.03 E-value=2.7e+02 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHhhcc------CcceEEEEeeecCCceEEEEeCCHH
Q 019429 20 SGERAHVFSAF------GFVHKITTFEKTAGFQALVQFSDTE 55 (341)
Q Consensus 20 e~~L~~lF~~f------G~V~~v~i~~~~~g~~aFVeF~~~e 55 (341)
++++.+++++| |.|..-++.+-...+ +||.+...-
T Consensus 15 ~~~f~~~le~~~~~~~~G~iv~G~V~~i~~~g-~~Vdig~k~ 55 (318)
T PRK07400 15 HEDFAALLDKYDYHFKPGDIVNGTVFSLEPRG-ALIDIGAKT 55 (318)
T ss_pred HHHHHHHHHhhHhhcCCCCEEEEEEEEEECCE-EEEEECCCe
Confidence 46777777665 888877766633343 888886543
No 247
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=28.93 E-value=2.6e+02 Score=27.54 Aligned_cols=10 Identities=0% Similarity=0.052 Sum_probs=4.2
Q ss_pred HHHHHhhccC
Q 019429 22 ERAHVFSAFG 31 (341)
Q Consensus 22 ~L~~lF~~fG 31 (341)
.+.+..+..+
T Consensus 51 qi~~~m~kld 60 (487)
T KOG4672|consen 51 QITSKMEKLD 60 (487)
T ss_pred HHHHHHHhhc
Confidence 3444444443
No 248
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=28.48 E-value=40 Score=27.69 Aligned_cols=32 Identities=13% Similarity=-0.090 Sum_probs=27.8
Q ss_pred cccCCCCCCCCHHHHHHHhhccCcceEEEEee
Q 019429 9 SRKYLQWQLSASGERAHVFSAFGFVHKITTFE 40 (341)
Q Consensus 9 ~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~ 40 (341)
.+.+||...-+++.|+.+-+.+|++.++....
T Consensus 108 ri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 108 RIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 46799999888899999999999999997554
No 249
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.12 E-value=64 Score=30.13 Aligned_cols=48 Identities=6% Similarity=0.141 Sum_probs=33.5
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHH
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 57 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A 57 (341)
+++.||+.++.- .||+....+-|-+---+.-++..+ .||+.|.+...|
T Consensus 333 i~~~nl~rd~rv-~dlk~~lr~~~~~pm~iswkg~~~-k~flh~~~~~~~ 380 (396)
T KOG4410|consen 333 IKLTNLSRDIRV-KDLKSELRKRECTPMSISWKGHFG-KCFLHFGNRKGV 380 (396)
T ss_pred eeeccCccccch-HHHHHHHHhcCCCceeEeeecCCc-ceeEecCCccCC
Confidence 678999999998 678887777765432222334444 499999987644
No 250
>PRK11901 hypothetical protein; Reviewed
Probab=26.92 E-value=1e+02 Score=29.31 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=32.1
Q ss_pred CCHHHHHHHhhccCcceEEEEeeec-CCc--eEE--EEeCCHHHHHHHHHHhcC
Q 019429 18 SASGERAHVFSAFGFVHKITTFEKT-AGF--QAL--VQFSDTETASSAKNALDG 66 (341)
Q Consensus 18 t~e~~L~~lF~~fG~V~~v~i~~~~-~g~--~aF--VeF~~~e~A~~Ai~~lng 66 (341)
.+++.|+.+-++.+ +.++.+++.. +|. |.. =+|.+.++|++|++.|--
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 45678888877776 4566666622 221 222 269999999999997653
No 251
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.81 E-value=12 Score=36.85 Aligned_cols=73 Identities=4% Similarity=-0.079 Sum_probs=56.6
Q ss_pred eecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-C---eEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 143 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-G---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 143 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-g---~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+..++...++++|.-+|..||.|.-+..-++-. | ..+||+-.. ..|..+|..+--+.+++. .++++.++...
T Consensus 8 l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~---~~r~~~~~~s~ 83 (572)
T KOG4365|consen 8 LKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES---QDRKAVSPSSS 83 (572)
T ss_pred HhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhh---hhhhhcCchhh
Confidence 678888899999999999999998876544322 2 347777554 477888888888888888 99999887665
Q ss_pred C
Q 019429 219 L 219 (341)
Q Consensus 219 ~ 219 (341)
+
T Consensus 84 ~ 84 (572)
T KOG4365|consen 84 E 84 (572)
T ss_pred h
Confidence 4
No 252
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=26.79 E-value=3.4e+02 Score=27.75 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=5.5
Q ss_pred EEEEEcCCh
Q 019429 178 QALIQYPDV 186 (341)
Q Consensus 178 ~afV~F~~~ 186 (341)
.|.+++.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 366776663
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.48 E-value=74 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=26.0
Q ss_pred CcceEEEEee---e--cCCceEEEEeCCHHHHHHHHHHhc
Q 019429 31 GFVHKITTFE---K--TAGFQALVQFSDTETASSAKNALD 65 (341)
Q Consensus 31 G~V~~v~i~~---~--~~g~~aFVeF~~~e~A~~Ai~~ln 65 (341)
|++.+|.+.+ + ..++--||+|.+.++|.+.++.-.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 7999987665 2 223459999999999998776433
No 254
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.21 E-value=2.5e+02 Score=19.34 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHcccC-CeeEEEEEcCCC-CeEEEEEcCChhHHHHHHHHhcCce
Q 019429 149 AVTLDVLHMVFSAFG-PVQKIAMFDKNG-GLQALIQYPDVQTAVVAKEALEGHC 200 (341)
Q Consensus 149 ~vt~~~L~~~F~~fG-~v~~v~i~~~~~-g~~afV~F~~~~~A~~Ai~~l~g~~ 200 (341)
.=.-.++-++|.+.| .|..+.++.... +. --+.+++.+.|.++++. +|..
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~~~~~~~-~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIADTSEFGI-LRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEecCCCCE-EEEEECCHHHHHHHHHH-CCCE
Confidence 345677788888877 788887765432 22 33455666666666543 3443
No 255
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.20 E-value=95 Score=29.07 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=35.7
Q ss_pred CCCCCCCCHHHHHHHh----hccCcceEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019429 12 YLQWQLSASGERAHVF----SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 62 (341)
Q Consensus 12 NLp~~~t~e~~L~~lF----~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~ 62 (341)
-|+.|.+++++++..| ..||.|.-.+---+... ..|.+..+.++....++
T Consensus 67 ~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~md 120 (282)
T KOG1205|consen 67 VLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMD 120 (282)
T ss_pred EEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhh
Confidence 3678999999999888 78999764433223333 37788888888876665
No 256
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.93 E-value=72 Score=29.46 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=29.9
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 62 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~ 62 (341)
.-|.||||.+++ ..|..+++.--.+. .+|-|...|-|++-..
T Consensus 98 ~vVaNlPY~Iss-pii~kll~~~~~~~------------~~v~M~QkEva~Rl~A 139 (259)
T COG0030 98 KVVANLPYNISS-PILFKLLEEKFIIQ------------DMVLMVQKEVAERLVA 139 (259)
T ss_pred EEEEcCCCcccH-HHHHHHHhccCccc------------eEEEEeHHHHHHHHhC
Confidence 458999999999 67887777654432 5555666777877664
No 257
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.86 E-value=55 Score=20.57 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=9.6
Q ss_pred CCCHHHHHHHhhccCc
Q 019429 17 LSASGERAHVFSAFGF 32 (341)
Q Consensus 17 ~t~e~~L~~lF~~fG~ 32 (341)
-++++.|+++|.+.++
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 3456899999988754
No 258
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=23.76 E-value=2.2e+02 Score=28.64 Aligned_cols=15 Identities=47% Similarity=0.944 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCC
Q 019429 300 HPYMPPGSMPMGPGM 314 (341)
Q Consensus 300 ~~~~p~g~~~~~p~~ 314 (341)
.+++|+|-|++.||-
T Consensus 583 ~~~vP~~~M~~~PG~ 597 (654)
T COG5180 583 SPHVPAGFMAAGPGA 597 (654)
T ss_pred CCCCCccccccCCCC
Confidence 356687777755544
No 259
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=23.75 E-value=50 Score=18.98 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=12.7
Q ss_pred CceecccccccCCC-CCCC
Q 019429 1 MFYICRPLSRKYLQ-WQLS 18 (341)
Q Consensus 1 ~~~~~r~~~~~NLp-~~~t 18 (341)
||+.|..|.--+|. |+++
T Consensus 1 mF~~~~~~~~ldls~wdts 19 (26)
T TIGR02167 1 MFSGCSSLTSLDVSNWDTS 19 (26)
T ss_pred CCCcccccccccccccccc
Confidence 89999988765663 5544
No 260
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=23.73 E-value=2.2e+02 Score=21.84 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=31.5
Q ss_pred CCCCHHHHHHH-------Hccc-CCeeEEEEEc----------CCCCeEEEEEcCChhHHHHHHHH
Q 019429 148 YAVTLDVLHMV-------FSAF-GPVQKIAMFD----------KNGGLQALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 148 ~~vt~~~L~~~-------F~~f-G~v~~v~i~~----------~~~g~~afV~F~~~~~A~~Ai~~ 195 (341)
+.++++++..+ +... |+|.++.-.. ...|.+.++.|.-..++.+.++.
T Consensus 16 p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 16 PDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 36677765554 4444 4777776432 23566788999988888888764
No 261
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=23.42 E-value=32 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHhhccCcc
Q 019429 14 QWQLSASGERAHVFSAFGFV 33 (341)
Q Consensus 14 p~~~t~e~~L~~lF~~fG~V 33 (341)
.|++-+++|||-+||+.+.=
T Consensus 5 ~W~tL~sdDLRf~ySq~~~~ 24 (48)
T PF11426_consen 5 DWHTLDSDDLRFIYSQSDNS 24 (48)
T ss_dssp GGGGS-TT-HHHHHHTS-TT
T ss_pred hccCCchHHHHHHHhcCCch
Confidence 36667778999999998763
No 262
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.59 E-value=87 Score=25.10 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=26.4
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCc
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGH 199 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~ 199 (341)
++.++|.+.|+.|..+.-..+..+. .|+ +.|+|.+--+..+--..|+++
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~-aiv~F~~~w~Gf~~A~~l~~~ 79 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGF-AIVEFNKDWSGFKNAMRLEKH 79 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEE-EEEE--SSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEE-EEEEECCChHHHHHHHHHHHH
Confidence 4668899999999987533344433 344 899999865555544445543
No 263
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=22.43 E-value=2.7e+02 Score=19.87 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHhhccC-cceEEEEee--ecC-CceEEEEeC-CHHHHHHHHHHhcC
Q 019429 16 QLSASGERAHVFSAFG-FVHKITTFE--KTA-GFQALVQFS-DTETASSAKNALDG 66 (341)
Q Consensus 16 ~~t~e~~L~~lF~~fG-~V~~v~i~~--~~~-g~~aFVeF~-~~e~A~~Ai~~lng 66 (341)
+...--++.+.|+.+| .+.+|.-.+ ... ...-||++. +.+..++|++.|..
T Consensus 10 ~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 10 EVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred CCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3444456777888887 466664333 112 233668877 55566778888875
No 264
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.12 E-value=64 Score=32.71 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=36.1
Q ss_pred cCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCC
Q 019429 11 KYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 68 (341)
Q Consensus 11 ~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~ 68 (341)
.+++..+-...+.+.++..++.+.+-.=.++..+ +++++|++.+.+.+|+..++|..
T Consensus 31 e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~-~~~~~~et~~~~~ka~~~v~g~~ 87 (534)
T KOG2187|consen 31 EMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPK-YAYVTFETPSDAGKAINLVDGLL 87 (534)
T ss_pred eccCchhhhhHHHhhhhhhcccccccCCCCCCCC-ceEEEEeccchhhhHHHHHhhhh
Confidence 3444444443455555555554443321223334 69999999999999999999976
No 265
>PRK11901 hypothetical protein; Reviewed
Probab=21.84 E-value=1.7e+02 Score=27.87 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEE----EcCChhHHHHHHHHhcC
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALI----QYPDVQTAVVAKEALEG 198 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV----~F~~~~~A~~Ai~~l~g 198 (341)
-+++.|..+-.+++ +..+.++... +|.--|| .|.++++|..|++.|--
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 45777888777775 4555554322 3322444 69999999999998753
No 266
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.41 E-value=2.5e+02 Score=18.41 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCHHHHHHHHcccC-CeeEEEEEcCCCCe-EEEEEcCChhHHHHHH
Q 019429 150 VTLDVLHMVFSAFG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAK 193 (341)
Q Consensus 150 vt~~~L~~~F~~fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~Ai 193 (341)
-.-.++.++++..| .|..+.+.....+. ..-+.+++.+.|.+++
T Consensus 10 G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 10 GRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred ChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34556677777776 78777766543121 2567788888777765
No 267
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.68 E-value=1.3e+02 Score=21.14 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.2
Q ss_pred EeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCccccc
Q 019429 50 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK 96 (341)
Q Consensus 50 eF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~ 96 (341)
+|.|.++.+.||..+.= ..+..+++..+..+++..+
T Consensus 9 ~F~~~~e~k~av~~yai-----------~~~~~~~v~ksd~~r~~~~ 44 (67)
T PF03108_consen 9 TFPSKEEFKEAVREYAI-----------KNGFEFKVKKSDKKRYRAK 44 (67)
T ss_pred EECCHHHHHHHHHHHHH-----------hcCcEEEEeccCCEEEEEE
Confidence 69999999999997762 2477788887776655544
No 268
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=8.8e+02 Score=24.40 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.7
Q ss_pred EEEcCCh
Q 019429 180 LIQYPDV 186 (341)
Q Consensus 180 fV~F~~~ 186 (341)
.++|.|-
T Consensus 318 e~dfSDD 324 (483)
T KOG2236|consen 318 EQDFSDD 324 (483)
T ss_pred hhccchH
Confidence 3456554
Done!