Query 019429
Match_columns 341
No_of_seqs 257 out of 1551
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.9E-32 6.7E-37 243.8 13.9 162 4-218 14-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.5E-31 1.5E-35 223.7 16.6 158 6-216 1-166 (166)
3 1fxl_A Paraneoplastic encephal 100.0 9.6E-31 3.3E-35 221.9 17.3 156 6-214 3-167 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 9.6E-31 3.3E-35 222.5 16.4 158 4-214 2-168 (168)
5 3tyt_A Heterogeneous nuclear r 100.0 1.3E-30 4.4E-35 231.1 17.5 188 5-214 4-204 (205)
6 3pgw_A U1-A; protein-RNA compl 100.0 2.8E-30 9.7E-35 238.7 20.5 197 4-216 8-282 (282)
7 2adc_A Polypyrimidine tract-bi 100.0 6.9E-30 2.4E-34 229.8 20.7 189 4-217 33-228 (229)
8 3nmr_A Cugbp ELAV-like family 100.0 3.3E-30 1.1E-34 220.5 16.8 163 5-215 3-175 (175)
9 2qfj_A FBP-interacting repress 100.0 2.4E-30 8.1E-35 229.2 15.4 170 5-218 28-206 (216)
10 1qm9_A Polypyrimidine tract-bi 100.0 9.7E-30 3.3E-34 223.0 17.7 188 5-217 3-197 (198)
11 1l3k_A Heterogeneous nuclear r 100.0 3E-29 1E-33 218.8 15.6 165 4-219 12-185 (196)
12 2g4b_A Splicing factor U2AF 65 100.0 4E-29 1.4E-33 213.5 15.3 153 4-214 3-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 9.9E-29 3.4E-33 215.8 17.4 176 5-218 4-195 (198)
14 2cjk_A Nuclear polyadenylated 100.0 2.7E-29 9.3E-34 213.5 11.3 155 5-217 3-166 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 2.7E-29 9.2E-34 215.6 10.9 159 5-217 13-174 (175)
16 3smz_A Protein raver-1, ribonu 100.0 1.1E-27 3.8E-32 221.4 16.9 163 5-219 95-266 (284)
17 3sde_A Paraspeckle component 1 99.9 3.1E-27 1E-31 216.7 16.2 153 3-218 20-180 (261)
18 2ghp_A U4/U6 snRNA-associated 99.9 3E-27 1E-31 219.4 15.2 165 4-217 116-291 (292)
19 3zzy_A Polypyrimidine tract-bi 99.9 4.2E-27 1.5E-31 192.6 12.7 108 131-239 21-128 (130)
20 3smz_A Protein raver-1, ribonu 99.9 1.3E-26 4.4E-31 214.3 17.4 152 4-219 21-177 (284)
21 2ghp_A U4/U6 snRNA-associated 99.9 1.1E-26 3.6E-31 215.7 15.3 151 5-218 41-198 (292)
22 2e5i_A Heterogeneous nuclear r 99.9 6.6E-25 2.3E-29 178.6 13.8 102 134-237 21-122 (124)
23 1sjr_A Polypyrimidine tract-bi 99.9 3.7E-24 1.3E-28 181.6 12.4 110 133-244 41-151 (164)
24 3zzy_A Polypyrimidine tract-bi 99.9 4.8E-23 1.6E-27 168.6 9.9 99 7-113 30-128 (130)
25 1sjr_A Polypyrimidine tract-bi 99.9 1.3E-21 4.6E-26 165.8 10.5 102 5-114 46-147 (164)
26 2e5i_A Heterogeneous nuclear r 99.9 2.3E-21 8E-26 157.7 10.4 96 7-111 27-122 (124)
27 2i2y_A Fusion protein consists 99.8 1.9E-20 6.5E-25 157.2 13.4 137 42-217 11-148 (150)
28 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-19 3.8E-24 153.6 14.5 137 41-218 10-151 (158)
29 4f25_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 149.1 7.7 76 6-91 6-83 (115)
30 3r27_A HnRNP L, heterogeneous 99.8 5.4E-20 1.8E-24 143.7 7.9 80 4-93 20-99 (100)
31 4fxv_A ELAV-like protein 1; RN 99.8 7.7E-19 2.6E-23 137.3 7.7 80 1-90 15-98 (99)
32 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-18 4.6E-23 137.0 7.2 80 4-95 15-96 (105)
33 1wex_A Hypothetical protein (r 99.7 3.2E-18 1.1E-22 135.0 8.8 81 4-94 14-94 (104)
34 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-18 6.5E-23 139.4 7.6 82 4-95 30-111 (119)
35 3r27_A HnRNP L, heterogeneous 99.7 9.7E-18 3.3E-22 130.9 10.7 79 134-219 19-99 (100)
36 1x4d_A Matrin 3; structural ge 99.7 1.4E-18 4.8E-23 136.5 5.8 81 4-94 14-96 (102)
37 2cq1_A PTB-like protein L; RRM 99.7 3.4E-18 1.2E-22 134.1 7.1 82 4-95 14-95 (101)
38 3lqv_A PRE-mRNA branch site pr 99.7 2.6E-18 8.8E-23 137.5 6.3 102 4-164 7-109 (115)
39 1x4f_A Matrin 3; structural ge 99.7 5.1E-18 1.7E-22 135.4 7.0 78 4-91 24-102 (112)
40 2wbr_A GW182, gawky, LD47780P; 99.7 1.7E-17 5.8E-22 125.6 7.8 73 7-91 9-81 (89)
41 4fxv_A ELAV-like protein 1; RN 99.7 3.2E-17 1.1E-21 128.1 9.4 75 136-216 19-98 (99)
42 1wex_A Hypothetical protein (r 99.7 1.3E-16 4.4E-21 125.8 12.0 80 134-220 13-94 (104)
43 3s8s_A Histone-lysine N-methyl 99.7 2.2E-17 7.6E-22 131.5 7.7 78 4-91 5-86 (110)
44 1sjq_A Polypyrimidine tract-bi 99.7 6.1E-17 2.1E-21 127.5 9.0 79 135-220 15-95 (105)
45 2dnz_A Probable RNA-binding pr 99.7 9.5E-17 3.3E-21 123.7 9.0 78 4-91 4-85 (95)
46 2ad9_A Polypyrimidine tract-bi 99.7 1.8E-16 6.2E-21 127.7 10.8 80 134-220 29-110 (119)
47 2lkz_A RNA-binding protein 5; 99.7 2.4E-17 8.1E-22 127.9 5.2 80 5-90 9-94 (95)
48 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.3E-17 2.2E-21 122.6 7.5 78 4-91 5-86 (87)
49 2wbr_A GW182, gawky, LD47780P; 99.7 9.6E-17 3.3E-21 121.5 8.2 72 141-217 10-81 (89)
50 2lxi_A RNA-binding protein 10; 99.7 1.5E-17 5.1E-22 127.9 3.8 77 6-91 2-83 (91)
51 2lea_A Serine/arginine-rich sp 99.7 5.2E-17 1.8E-21 134.1 7.3 119 45-218 5-128 (135)
52 4f25_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 127.6 9.5 79 136-220 5-86 (115)
53 2hvz_A Splicing factor, argini 99.7 9.6E-17 3.3E-21 125.3 8.3 76 6-92 1-76 (101)
54 2jvr_A Nucleolar protein 3; RN 99.7 3.8E-17 1.3E-21 130.3 6.1 77 5-91 28-105 (111)
55 2cq1_A PTB-like protein L; RRM 99.7 4.1E-16 1.4E-20 122.2 11.7 80 134-220 13-94 (101)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.5E-17 2.6E-21 121.6 7.0 76 4-89 6-85 (85)
57 1x4a_A Splicing factor, argini 99.7 1.3E-16 4.3E-21 126.4 8.1 78 4-91 21-99 (109)
58 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-16 5.9E-21 124.3 8.7 79 4-92 14-94 (103)
59 2x1f_A MRNA 3'-END-processing 99.7 1.3E-16 4.5E-21 123.4 7.8 79 5-93 2-84 (96)
60 2diu_A KIAA0430 protein; struc 99.7 5.3E-16 1.8E-20 118.6 10.9 78 134-221 6-88 (96)
61 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.6E-21 130.2 8.1 79 4-92 28-111 (127)
62 2cpj_A Non-POU domain-containi 99.7 1.3E-16 4.4E-21 124.1 7.5 77 3-91 13-89 (99)
63 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-16 4.5E-21 122.7 7.4 76 4-89 15-94 (94)
64 1whw_A Hypothetical protein ri 99.7 1.5E-16 5.1E-21 123.6 7.8 78 4-91 7-88 (99)
65 2diu_A KIAA0430 protein; struc 99.7 1.9E-16 6.4E-21 121.1 8.0 73 4-91 7-84 (96)
66 2dnq_A RNA-binding protein 4B; 99.7 2.2E-16 7.6E-21 120.6 8.5 74 4-91 7-80 (90)
67 2dgu_A Heterogeneous nuclear r 99.7 1.1E-15 3.8E-20 119.8 12.5 77 135-220 10-86 (103)
68 2dgv_A HnRNP M, heterogeneous 99.7 1.4E-16 4.7E-21 122.1 7.2 78 4-91 7-86 (92)
69 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-16 6.3E-21 123.8 8.0 78 4-91 11-92 (102)
70 1why_A Hypothetical protein ri 99.7 2.1E-16 7.4E-21 122.4 8.2 76 4-91 16-93 (97)
71 2cq3_A RNA-binding protein 9; 99.7 2.5E-16 8.7E-21 123.3 8.6 79 4-92 14-94 (103)
72 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-16 5.9E-21 122.9 7.3 79 3-91 7-90 (96)
73 3s8s_A Histone-lysine N-methyl 99.7 4.6E-16 1.6E-20 123.8 10.0 79 135-219 5-88 (110)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.9E-21 125.0 6.3 79 4-92 11-93 (102)
75 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-16 5.7E-21 127.0 7.4 78 4-91 24-105 (115)
76 2dgs_A DAZ-associated protein 99.6 3E-16 1E-20 122.0 8.6 77 4-91 9-89 (99)
77 2d9p_A Polyadenylate-binding p 99.6 2E-16 6.9E-21 123.9 7.6 78 4-91 14-93 (103)
78 2cpf_A RNA binding motif prote 99.6 2.2E-16 7.7E-21 122.4 7.7 78 4-91 4-88 (98)
79 3md1_A Nuclear and cytoplasmic 99.6 2.5E-16 8.7E-21 118.1 7.7 75 7-91 3-81 (83)
80 3p5t_L Cleavage and polyadenyl 99.6 9E-17 3.1E-21 123.0 5.3 76 6-91 2-83 (90)
81 1x4d_A Matrin 3; structural ge 99.6 3.7E-16 1.3E-20 122.6 8.9 76 135-217 14-92 (102)
82 1x5t_A Splicing factor 3B subu 99.6 1.2E-16 4.2E-21 123.4 6.0 78 4-91 4-86 (96)
83 2do4_A Squamous cell carcinoma 99.6 2.9E-16 1E-20 122.3 8.1 78 4-91 16-96 (100)
84 1whx_A Hypothetical protein ri 99.6 2.2E-16 7.6E-21 125.8 7.5 75 5-91 10-84 (111)
85 2err_A Ataxin-2-binding protei 99.6 1.7E-16 5.9E-21 125.9 6.8 78 4-91 28-107 (109)
86 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-16 9.2E-21 121.9 7.7 76 5-91 19-94 (97)
87 2dgu_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 122.2 8.7 75 4-92 10-84 (103)
88 1x5u_A Splicing factor 3B subu 99.6 2.8E-16 9.7E-21 123.4 7.7 78 4-91 14-95 (105)
89 1x4c_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 123.8 8.3 75 4-91 14-93 (108)
90 2cqc_A Arginine/serine-rich sp 99.6 2.5E-16 8.4E-21 121.3 7.1 76 4-89 14-93 (95)
91 2la6_A RNA-binding protein FUS 99.6 3.1E-16 1.1E-20 121.9 7.8 76 4-89 12-99 (99)
92 2lxi_A RNA-binding protein 10; 99.6 2E-16 6.7E-21 121.6 6.4 77 136-218 1-84 (91)
93 2la4_A Nuclear and cytoplasmic 99.6 1.7E-16 5.9E-21 123.8 6.2 74 5-90 27-100 (101)
94 4a8x_A RNA-binding protein wit 99.6 3.1E-16 1.1E-20 118.9 7.4 78 4-91 3-85 (88)
95 2dnm_A SRP46 splicing factor; 99.6 2.1E-16 7E-21 123.8 6.5 78 4-91 12-93 (103)
96 1p27_B RNA-binding protein 8A; 99.6 3.6E-16 1.2E-20 123.0 7.9 78 4-91 22-103 (106)
97 2jrs_A RNA-binding protein 39; 99.6 3.2E-16 1.1E-20 124.2 7.5 78 4-91 25-106 (108)
98 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-16 1.1E-20 125.1 7.6 78 4-91 14-95 (115)
99 2ytc_A PRE-mRNA-splicing facto 99.6 2.5E-16 8.4E-21 118.8 6.5 74 4-89 11-85 (85)
100 2dnh_A Bruno-like 5, RNA bindi 99.6 4.7E-16 1.6E-20 122.1 8.4 79 4-91 14-97 (105)
101 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.2E-16 2.1E-20 131.8 9.8 139 49-219 11-154 (165)
102 2kxn_B Transformer-2 protein h 99.6 4.5E-16 1.5E-20 127.4 8.5 78 4-91 45-126 (129)
103 1why_A Hypothetical protein ri 99.6 1.2E-15 4.1E-20 118.1 10.5 77 135-218 16-94 (97)
104 1x4h_A RNA-binding protein 28; 99.6 3.9E-16 1.3E-20 123.8 7.9 78 4-91 14-101 (111)
105 2ywk_A Putative RNA-binding pr 99.6 2.9E-16 9.9E-21 121.0 6.9 76 4-89 15-93 (95)
106 2dnq_A RNA-binding protein 4B; 99.6 1.4E-15 4.9E-20 116.1 10.7 75 135-218 7-81 (90)
107 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.6E-15 9E-20 117.4 12.5 79 135-219 14-95 (103)
108 2e44_A Insulin-like growth fac 99.6 4E-16 1.4E-20 120.5 7.7 78 5-92 15-93 (96)
109 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.7E-16 2.6E-20 116.0 9.0 75 135-215 6-85 (85)
110 2dgp_A Bruno-like 4, RNA bindi 99.6 4E-16 1.4E-20 122.7 7.6 81 4-91 12-96 (106)
111 1whw_A Hypothetical protein ri 99.6 1.6E-15 5.6E-20 117.7 11.0 79 135-219 7-90 (99)
112 1x4c_A Splicing factor, argini 99.6 2.8E-15 9.5E-20 118.6 12.3 75 136-218 15-94 (108)
113 2cq0_A Eukaryotic translation 99.6 2.7E-16 9.1E-21 123.2 6.3 78 4-91 14-95 (103)
114 3bs9_A Nucleolysin TIA-1 isofo 99.6 1E-15 3.4E-20 115.9 9.3 76 136-217 6-86 (87)
115 2cph_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 121.7 8.4 78 4-91 14-97 (107)
116 2fy1_A RNA-binding motif prote 99.6 5.4E-16 1.9E-20 124.5 8.1 79 4-92 6-87 (116)
117 2dnp_A RNA-binding protein 14; 99.6 4.5E-16 1.5E-20 118.9 7.3 74 4-91 8-81 (90)
118 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.2E-15 4.2E-20 119.1 9.9 79 135-219 11-94 (102)
119 2dgt_A RNA-binding protein 30; 99.6 4.5E-16 1.5E-20 119.4 7.3 74 4-91 9-82 (92)
120 2e5h_A Zinc finger CCHC-type a 99.6 2E-15 7E-20 115.9 11.0 76 134-215 14-94 (94)
121 2x1f_A MRNA 3'-END-processing 99.6 1.2E-15 4.2E-20 117.9 9.7 79 136-220 2-85 (96)
122 1p1t_A Cleavage stimulation fa 99.6 4.3E-16 1.5E-20 122.1 7.2 77 5-91 8-88 (104)
123 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 121.2 6.2 78 4-91 7-89 (97)
124 2cq3_A RNA-binding protein 9; 99.6 4.7E-15 1.6E-19 116.0 12.8 79 135-219 14-95 (103)
125 1x4f_A Matrin 3; structural ge 99.6 6.6E-16 2.3E-20 123.1 7.9 78 134-218 23-103 (112)
126 2khc_A Testis-specific RNP-typ 99.6 2.5E-16 8.7E-21 126.4 5.5 76 4-89 39-118 (118)
127 2dnz_A Probable RNA-binding pr 99.6 2.5E-15 8.4E-20 115.7 10.9 78 135-218 4-86 (95)
128 2do0_A HnRNP M, heterogeneous 99.6 7.2E-16 2.5E-20 122.9 7.8 78 4-91 14-94 (114)
129 1x5s_A Cold-inducible RNA-bind 99.6 2.5E-15 8.5E-20 117.3 10.7 79 135-219 11-94 (102)
130 2hvz_A Splicing factor, argini 99.6 2.6E-15 8.8E-20 117.1 10.7 74 141-218 3-76 (101)
131 2cpj_A Non-POU domain-containi 99.6 2.7E-15 9.1E-20 116.6 10.8 77 135-218 14-90 (99)
132 3ulh_A THO complex subunit 4; 99.6 6.4E-16 2.2E-20 121.8 7.3 76 4-89 28-106 (107)
133 1u6f_A Tcubp1, RNA-binding pro 99.6 7.4E-16 2.5E-20 127.3 8.0 78 4-91 41-122 (139)
134 2ek1_A RNA-binding protein 12; 99.6 2.3E-16 7.8E-21 121.6 4.5 76 4-89 14-93 (95)
135 2krb_A Eukaryotic translation 99.6 2.8E-16 9.5E-21 117.7 4.9 72 6-86 2-81 (81)
136 2dgx_A KIAA0430 protein; RRM d 99.6 2.8E-15 9.7E-20 116.0 10.7 77 136-218 9-91 (96)
137 1x4g_A Nucleolysin TIAR; struc 99.6 7E-16 2.4E-20 122.2 7.3 76 4-91 24-99 (109)
138 1oo0_B CG8781-PA, drosophila Y 99.6 7E-16 2.4E-20 122.2 7.3 78 4-91 25-106 (110)
139 1s79_A Lupus LA protein; RRM, 99.6 7E-16 2.4E-20 121.4 7.2 76 4-90 10-88 (103)
140 3ucg_A Polyadenylate-binding p 99.6 7.2E-16 2.5E-20 117.2 7.0 77 4-91 5-85 (89)
141 2nlw_A Eukaryotic translation 99.6 5.3E-16 1.8E-20 122.2 6.5 78 5-91 15-100 (105)
142 2jvo_A Nucleolar protein 3; nu 99.6 8.8E-16 3E-20 121.7 7.7 74 4-91 30-103 (108)
143 2dgo_A Cytotoxic granule-assoc 99.6 6.8E-15 2.3E-19 117.4 12.9 79 135-219 14-97 (115)
144 2cpi_A CCR4-NOT transcription 99.6 5.9E-16 2E-20 123.2 6.7 78 5-92 15-102 (111)
145 1x4a_A Splicing factor, argini 99.6 4.5E-15 1.5E-19 117.4 11.7 78 135-218 21-100 (109)
146 3md1_A Nuclear and cytoplasmic 99.6 2.4E-15 8.2E-20 112.7 9.5 74 141-218 4-82 (83)
147 2xnq_A Nuclear polyadenylated 99.6 1.3E-15 4.4E-20 118.3 8.2 74 4-91 21-95 (97)
148 2cqh_A IGF-II mRNA-binding pro 99.6 3.5E-16 1.2E-20 120.2 5.0 75 4-91 7-83 (93)
149 2dgs_A DAZ-associated protein 99.6 4.7E-15 1.6E-19 115.1 11.4 78 135-219 9-91 (99)
150 3ns6_A Eukaryotic translation 99.6 3.5E-16 1.2E-20 122.2 5.0 77 5-91 6-93 (100)
151 2a3j_A U1 small nuclear ribonu 99.6 2.3E-15 7.7E-20 122.9 9.9 81 135-221 28-114 (127)
152 2div_A TRNA selenocysteine ass 99.6 5.1E-16 1.7E-20 120.6 5.8 78 4-91 8-94 (99)
153 2cph_A RNA binding motif prote 99.6 3.3E-15 1.1E-19 117.6 10.5 79 135-219 14-99 (107)
154 2fy1_A RNA-binding motif prote 99.6 6.8E-15 2.3E-19 118.1 12.5 78 136-219 7-88 (116)
155 2do4_A Squamous cell carcinoma 99.6 3.8E-15 1.3E-19 115.9 10.6 78 135-218 16-97 (100)
156 2lkz_A RNA-binding protein 5; 99.6 1.6E-15 5.4E-20 117.6 8.3 75 136-216 9-94 (95)
157 2cpf_A RNA binding motif prote 99.6 1.9E-15 6.5E-20 117.1 8.9 78 135-218 4-89 (98)
158 2dnh_A Bruno-like 5, RNA bindi 99.6 4.7E-15 1.6E-19 116.3 11.2 79 135-219 14-99 (105)
159 2kvi_A Nuclear polyadenylated 99.6 1.1E-15 3.9E-20 118.2 7.4 74 4-91 9-83 (96)
160 2dgv_A HnRNP M, heterogeneous 99.6 2.1E-15 7.2E-20 115.4 8.8 78 135-218 7-87 (92)
161 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-15 4.2E-20 118.6 7.6 74 4-91 14-89 (99)
162 2err_A Ataxin-2-binding protei 99.6 2.7E-15 9.2E-20 119.0 9.7 78 135-218 28-108 (109)
163 2cpx_A Hypothetical protein FL 99.6 9.3E-16 3.2E-20 122.4 7.0 78 4-91 24-105 (115)
164 1x5t_A Splicing factor 3B subu 99.6 2.4E-15 8.3E-20 116.0 9.1 79 135-219 4-88 (96)
165 2cqp_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 121.1 4.5 78 4-91 14-95 (98)
166 3tyt_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 132.6 10.4 79 135-219 3-82 (205)
167 2cpe_A RNA-binding protein EWS 99.6 8.4E-16 2.9E-20 122.4 6.5 78 4-91 14-103 (113)
168 2kt5_A RNA and export factor-b 99.6 1.7E-15 5.8E-20 122.7 8.4 79 4-92 34-115 (124)
169 3n9u_C Cleavage and polyadenyl 99.6 6E-16 2.1E-20 130.9 5.9 78 5-92 55-138 (156)
170 2ytc_A PRE-mRNA-splicing facto 99.6 3.1E-15 1E-19 112.8 9.2 74 135-215 11-85 (85)
171 2i2y_A Fusion protein consists 99.6 1.7E-15 5.8E-20 126.8 8.6 77 4-91 72-148 (150)
172 4a8x_A RNA-binding protein wit 99.6 3.3E-15 1.1E-19 113.1 9.4 77 136-218 4-86 (88)
173 2cqc_A Arginine/serine-rich sp 99.6 3E-15 1E-19 115.1 9.3 76 135-216 14-94 (95)
174 2jvo_A Nucleolar protein 3; nu 99.6 3.8E-15 1.3E-19 118.0 10.0 75 135-218 30-104 (108)
175 2xnq_A Nuclear polyadenylated 99.6 5.4E-15 1.8E-19 114.8 10.6 75 134-217 20-95 (97)
176 2dhg_A TRNA selenocysteine ass 99.6 9.7E-16 3.3E-20 120.1 6.5 78 4-91 8-90 (104)
177 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8.9E-16 3E-20 119.8 6.2 76 4-91 18-98 (100)
178 2e5g_A U6 snRNA-specific termi 99.6 7.8E-16 2.7E-20 118.6 5.8 76 4-91 7-82 (94)
179 2cq2_A Hypothetical protein LO 99.6 6E-16 2E-20 123.6 5.2 80 4-91 24-106 (114)
180 1x5u_A Splicing factor 3B subu 99.6 7.4E-15 2.5E-19 115.2 11.5 79 135-219 14-97 (105)
181 2dgt_A RNA-binding protein 30; 99.6 5.7E-15 2E-19 113.2 10.5 75 135-218 9-83 (92)
182 2ywk_A Putative RNA-binding pr 99.6 2.8E-15 9.7E-20 115.3 8.9 76 135-216 15-94 (95)
183 2jvr_A Nucleolar protein 3; RN 99.6 2.1E-15 7.2E-20 120.2 8.3 74 140-217 30-105 (111)
184 2d9p_A Polyadenylate-binding p 99.6 4.8E-15 1.6E-19 116.0 10.3 79 135-219 14-95 (103)
185 2cq0_A Eukaryotic translation 99.6 3.5E-15 1.2E-19 116.7 9.5 79 135-219 14-97 (103)
186 2la4_A Nuclear and cytoplasmic 99.6 2.3E-15 8E-20 117.3 8.4 74 136-216 27-100 (101)
187 2cqd_A RNA-binding region cont 99.6 1E-15 3.5E-20 122.5 6.4 77 4-91 16-96 (116)
188 3ex7_B RNA-binding protein 8A; 99.6 1.4E-15 4.8E-20 123.4 7.3 78 4-91 21-102 (126)
189 2cpz_A CUG triplet repeat RNA- 99.6 5.2E-15 1.8E-19 118.2 10.5 79 135-219 24-107 (115)
190 3pgw_S U1-70K; protein-RNA com 99.6 1E-15 3.4E-20 150.0 7.5 78 136-219 102-184 (437)
191 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4.2E-20 112.7 6.1 72 6-88 1-76 (77)
192 1wg1_A KIAA1579 protein, homol 99.6 1.3E-15 4.6E-20 115.9 6.2 76 4-92 4-79 (88)
193 2dnm_A SRP46 splicing factor; 99.6 5.1E-15 1.7E-19 115.8 9.7 78 135-218 12-94 (103)
194 2cq2_A Hypothetical protein LO 99.6 3E-15 1E-19 119.5 8.4 78 135-217 24-106 (114)
195 2kvi_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 114.8 9.2 75 135-218 9-84 (96)
196 2m2b_A RNA-binding protein 10; 99.6 6.9E-16 2.4E-20 126.4 4.8 77 4-91 22-108 (131)
197 2mss_A Protein (musashi1); RNA 99.6 1.1E-15 3.7E-20 112.5 5.4 71 7-88 1-75 (75)
198 2ki2_A SS-DNA binding protein 99.6 3.5E-16 1.2E-20 119.3 2.8 75 6-91 2-80 (90)
199 1whx_A Hypothetical protein ri 99.6 3.5E-15 1.2E-19 118.8 8.6 77 136-219 10-86 (111)
200 1x4g_A Nucleolysin TIAR; struc 99.6 7.8E-15 2.7E-19 116.1 10.5 76 136-218 25-100 (109)
201 1x4e_A RNA binding motif, sing 99.6 4.5E-16 1.6E-20 117.4 3.1 75 5-89 5-83 (85)
202 2cq4_A RNA binding motif prote 99.6 1.1E-15 3.8E-20 121.9 5.6 76 5-91 25-104 (114)
203 2cpi_A CCR4-NOT transcription 99.6 2.4E-15 8.2E-20 119.6 7.5 77 136-218 15-102 (111)
204 1wf1_A RNA-binding protein RAL 99.6 1.7E-15 5.8E-20 120.1 6.5 73 5-91 27-100 (110)
205 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.5E-15 8.7E-20 126.6 7.8 78 4-91 38-119 (156)
206 1wi8_A EIF-4B, eukaryotic tran 99.6 2E-15 6.8E-20 118.5 6.6 76 4-91 14-94 (104)
207 2dh8_A DAZ-associated protein 99.6 1.1E-15 3.7E-20 120.1 5.1 77 4-91 15-95 (105)
208 3beg_B Splicing factor, argini 99.6 3.3E-15 1.1E-19 119.7 8.0 74 4-90 15-93 (115)
209 2khc_A Testis-specific RNP-typ 99.6 4.9E-15 1.7E-19 118.8 9.0 76 134-215 38-118 (118)
210 2dnp_A RNA-binding protein 14; 99.6 1E-14 3.5E-19 111.3 10.3 75 135-218 8-82 (90)
211 1nu4_A U1A RNA binding domain; 99.6 4.6E-15 1.6E-19 114.6 8.5 80 135-220 7-92 (97)
212 3p5t_L Cleavage and polyadenyl 99.6 1.4E-15 4.9E-20 116.2 5.5 74 141-218 4-84 (90)
213 2div_A TRNA selenocysteine ass 99.6 5E-15 1.7E-19 114.9 8.7 78 135-218 8-95 (99)
214 1p27_B RNA-binding protein 8A; 99.6 7.2E-15 2.5E-19 115.5 9.7 77 136-218 23-104 (106)
215 2dng_A Eukaryotic translation 99.6 2.1E-15 7.1E-20 118.1 6.5 76 4-91 14-93 (103)
216 2dis_A Unnamed protein product 99.6 2E-15 6.7E-20 119.4 6.3 78 4-91 7-92 (109)
217 2la6_A RNA-binding protein FUS 99.6 9E-15 3.1E-19 113.6 10.0 75 135-215 12-99 (99)
218 2jrs_A RNA-binding protein 39; 99.6 1.2E-14 4.2E-19 115.1 10.9 78 135-218 25-107 (108)
219 2lea_A Serine/arginine-rich sp 99.6 1.2E-15 4.1E-20 125.9 5.2 78 4-91 46-127 (135)
220 2fc9_A NCL protein; structure 99.6 1.1E-15 3.7E-20 119.3 4.7 78 4-91 14-91 (101)
221 2do0_A HnRNP M, heterogeneous 99.6 2.4E-14 8.2E-19 114.0 12.7 78 135-218 14-95 (114)
222 1oo0_B CG8781-PA, drosophila Y 99.6 6.7E-15 2.3E-19 116.5 9.3 77 136-218 26-107 (110)
223 1x4h_A RNA-binding protein 28; 99.6 1.6E-14 5.5E-19 114.3 11.5 79 135-219 14-103 (111)
224 2dgp_A Bruno-like 4, RNA bindi 99.6 8E-15 2.7E-19 115.2 9.6 78 135-218 12-97 (106)
225 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 120.7 6.3 77 4-91 26-106 (116)
226 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-14 3.8E-19 112.7 10.2 76 136-218 19-95 (97)
227 2dgw_A Probable RNA-binding pr 99.6 2.7E-15 9.2E-20 114.7 6.5 76 4-91 9-87 (91)
228 3ex7_B RNA-binding protein 8A; 99.6 8E-15 2.8E-19 118.9 9.6 78 135-218 21-103 (126)
229 1wg5_A Heterogeneous nuclear r 99.6 2.9E-15 9.9E-20 117.8 6.7 78 5-93 15-96 (104)
230 3s7r_A Heterogeneous nuclear r 99.6 2.8E-15 9.5E-20 113.6 6.3 74 4-88 10-87 (87)
231 1x5o_A RNA binding motif, sing 99.6 4.3E-15 1.5E-19 118.4 7.7 86 4-91 24-112 (114)
232 2jwn_A Embryonic polyadenylate 99.6 2.4E-15 8.3E-20 121.7 6.2 76 5-91 36-115 (124)
233 2kxn_B Transformer-2 protein h 99.6 8.5E-15 2.9E-19 119.8 9.5 78 135-218 45-127 (129)
234 2rs2_A Musashi-1, RNA-binding 99.6 3.8E-15 1.3E-19 118.2 7.1 77 4-91 24-104 (109)
235 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-14 5E-19 121.9 11.1 78 135-218 38-120 (156)
236 2kn4_A Immunoglobulin G-bindin 99.6 3.4E-15 1.2E-19 125.9 7.1 78 4-91 69-150 (158)
237 2cpd_A Apobec-1 stimulating pr 99.6 2.3E-14 7.9E-19 111.3 11.3 75 135-218 14-90 (99)
238 2cqh_A IGF-II mRNA-binding pro 99.6 6.1E-15 2.1E-19 113.2 7.9 76 135-218 7-84 (93)
239 3ulh_A THO complex subunit 4; 99.6 1.2E-14 4E-19 114.4 9.7 75 135-215 28-106 (107)
240 2kt5_A RNA and export factor-b 99.6 1.9E-14 6.5E-19 116.5 11.2 79 135-219 34-116 (124)
241 1p1t_A Cleavage stimulation fa 99.6 6.1E-15 2.1E-19 115.4 8.0 78 136-219 8-90 (104)
242 2cqd_A RNA-binding region cont 99.6 2.8E-14 9.6E-19 114.1 12.0 77 135-218 16-97 (116)
243 1u6f_A Tcubp1, RNA-binding pro 99.6 1.7E-14 5.7E-19 119.1 11.0 78 135-218 41-123 (139)
244 1wg1_A KIAA1579 protein, homol 99.6 1.3E-14 4.4E-19 110.4 9.5 77 136-220 5-81 (88)
245 1fjc_A Nucleolin RBD2, protein 99.6 1.6E-15 5.5E-20 117.1 4.5 77 4-91 15-91 (96)
246 3ns6_A Eukaryotic translation 99.6 1.9E-15 6.5E-20 118.0 4.8 76 136-217 6-93 (100)
247 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.4E-15 1.2E-19 123.0 6.4 74 5-88 63-140 (140)
248 3ucg_A Polyadenylate-binding p 99.6 1.1E-14 3.8E-19 110.5 8.7 75 136-217 6-85 (89)
249 1wf1_A RNA-binding protein RAL 99.6 1.3E-14 4.5E-19 115.0 9.4 74 136-218 27-101 (110)
250 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-15 4.6E-20 118.7 3.4 77 4-91 16-95 (101)
251 2db1_A Heterogeneous nuclear r 99.5 2.6E-15 8.8E-20 120.9 4.9 77 5-92 17-99 (118)
252 2dhg_A TRNA selenocysteine ass 99.5 1.2E-14 4.2E-19 113.7 8.7 78 136-219 9-92 (104)
253 3lqv_A PRE-mRNA branch site pr 99.5 2.4E-14 8.3E-19 114.2 10.4 78 135-218 7-86 (115)
254 2cpe_A RNA-binding protein EWS 99.5 1.5E-14 5.1E-19 115.1 8.8 78 135-218 14-104 (113)
255 2hgl_A HNRPF protein, heteroge 99.5 1.8E-15 6.3E-20 124.9 3.6 77 5-92 44-126 (136)
256 1x5p_A Negative elongation fac 99.5 1.3E-14 4.5E-19 112.3 8.2 74 4-91 14-87 (97)
257 2e44_A Insulin-like growth fac 99.5 2.3E-14 7.8E-19 110.5 9.5 77 136-218 15-93 (96)
258 1wi8_A EIF-4B, eukaryotic tran 99.5 1.9E-14 6.4E-19 112.8 9.0 75 136-218 15-95 (104)
259 2cq4_A RNA binding motif prote 99.5 1.7E-14 5.9E-19 115.0 8.9 76 136-218 25-105 (114)
260 2cqg_A TDP-43, TAR DNA-binding 99.5 1E-14 3.6E-19 114.0 7.4 76 4-91 14-93 (103)
261 1rk8_A CG8781-PA, CG8781-PA pr 99.5 8.5E-15 2.9E-19 124.7 7.4 78 4-91 71-152 (165)
262 1wez_A HnRNP H', FTP-3, hetero 99.5 4.7E-15 1.6E-19 116.3 5.3 76 4-91 14-92 (102)
263 3d2w_A TAR DNA-binding protein 99.5 7.9E-15 2.7E-19 112.1 6.3 73 6-91 12-84 (89)
264 1wel_A RNA-binding protein 12; 99.5 1.8E-15 6.2E-20 122.7 2.8 78 4-92 24-105 (124)
265 2lmi_A GRSF-1, G-rich sequence 99.5 4.3E-15 1.5E-19 117.4 4.9 78 4-92 10-93 (107)
266 2cpy_A RNA-binding protein 12; 99.5 3.7E-15 1.3E-19 119.1 4.6 77 5-92 15-95 (114)
267 2mss_A Protein (musashi1); RNA 99.5 9.6E-15 3.3E-19 107.4 6.4 69 141-214 2-75 (75)
268 1x5p_A Negative elongation fac 99.5 9.8E-14 3.4E-18 107.3 12.2 76 135-219 14-89 (97)
269 2dis_A Unnamed protein product 99.5 2E-14 6.8E-19 113.5 8.4 78 135-218 7-93 (109)
270 1x4e_A RNA binding motif, sing 99.5 4.7E-15 1.6E-19 111.8 4.5 74 135-214 4-82 (85)
271 2cqp_A RNA-binding protein 12; 99.5 1.1E-14 3.9E-19 112.7 6.8 76 136-217 15-95 (98)
272 3beg_B Splicing factor, argini 99.5 1.7E-14 5.8E-19 115.5 7.8 73 136-216 16-93 (115)
273 2ek1_A RNA-binding protein 12; 99.5 7.2E-15 2.5E-19 113.1 5.4 75 135-215 14-93 (95)
274 2cpx_A Hypothetical protein FL 99.5 2.4E-14 8.4E-19 114.1 8.6 79 135-219 24-107 (115)
275 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4.5E-14 1.6E-18 116.2 10.3 74 135-214 62-140 (140)
276 2fc8_A NCL protein; structure 99.5 8.5E-15 2.9E-19 114.2 5.6 78 4-91 14-92 (102)
277 2m2b_A RNA-binding protein 10; 99.5 2.2E-14 7.7E-19 117.4 8.4 78 135-219 22-110 (131)
278 2e5g_A U6 snRNA-specific termi 99.5 4.5E-14 1.5E-18 108.6 9.6 76 136-218 8-83 (94)
279 2dng_A Eukaryotic translation 99.5 3.8E-14 1.3E-18 110.8 9.3 76 135-218 14-94 (103)
280 2lcw_A RNA-binding protein FUS 99.3 9.5E-16 3.3E-20 122.8 0.0 78 4-91 6-95 (116)
281 3q2s_C Cleavage and polyadenyl 99.5 6.9E-15 2.4E-19 132.0 5.5 77 5-91 68-150 (229)
282 2j76_E EIF-4B, EIF4B, eukaryot 99.5 9.5E-15 3.2E-19 113.9 5.5 75 135-217 18-98 (100)
283 2dh8_A DAZ-associated protein 99.5 3.5E-14 1.2E-18 111.4 8.8 77 135-218 15-96 (105)
284 1x5o_A RNA binding motif, sing 99.5 4.5E-14 1.6E-18 112.4 9.6 80 135-217 24-112 (114)
285 2hzc_A Splicing factor U2AF 65 99.5 1.4E-14 4.8E-19 109.5 6.3 71 4-87 5-86 (87)
286 3egn_A RNA-binding protein 40; 99.5 1.2E-14 4E-19 120.7 6.1 78 4-91 44-130 (143)
287 1s79_A Lupus LA protein; RRM, 99.5 2.6E-14 9E-19 112.3 7.7 74 136-216 11-88 (103)
288 3s7r_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 106.2 9.4 73 135-214 10-87 (87)
289 1iqt_A AUF1, heterogeneous nuc 99.5 6.1E-15 2.1E-19 108.4 3.7 71 7-88 1-75 (75)
290 2jwn_A Embryonic polyadenylate 99.5 2.8E-14 9.5E-19 115.4 8.0 76 136-218 36-116 (124)
291 2dnn_A RNA-binding protein 12; 99.5 1.8E-14 6.2E-19 114.4 6.6 75 5-91 16-93 (109)
292 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 110.0 8.8 78 135-218 14-92 (101)
293 1fjc_A Nucleolin RBD2, protein 99.5 2E-14 6.9E-19 110.8 6.8 78 135-218 15-92 (96)
294 3u1l_A PRE-mRNA-splicing facto 99.5 1.7E-14 5.7E-19 129.8 7.2 83 4-91 133-229 (240)
295 3d2w_A TAR DNA-binding protein 99.5 5.3E-14 1.8E-18 107.4 8.9 76 135-218 10-85 (89)
296 3n9u_C Cleavage and polyadenyl 99.5 1.7E-14 5.9E-19 121.9 6.8 78 136-219 55-139 (156)
297 4f02_A Polyadenylate-binding p 99.5 1.7E-14 5.9E-19 127.6 7.0 77 5-91 103-181 (213)
298 2ki2_A SS-DNA binding protein 99.5 7.3E-15 2.5E-19 112.0 3.9 74 141-219 4-82 (90)
299 2hgn_A Heterogeneous nuclear r 99.5 6.4E-15 2.2E-19 122.1 3.9 77 4-92 45-124 (139)
300 2dit_A HIV TAT specific factor 99.5 3.4E-14 1.2E-18 113.1 7.8 79 4-91 14-102 (112)
301 2dgw_A Probable RNA-binding pr 99.5 1.1E-13 3.7E-18 105.7 10.4 75 136-218 10-88 (91)
302 2f3j_A RNA and export factor b 99.5 2.6E-14 8.8E-19 123.3 7.6 77 5-91 88-167 (177)
303 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.1E-14 1.1E-18 105.0 6.7 69 141-214 3-76 (77)
304 2rs2_A Musashi-1, RNA-binding 99.5 6.5E-14 2.2E-18 111.0 9.0 76 136-218 25-105 (109)
305 3q2s_C Cleavage and polyadenyl 99.5 9.7E-15 3.3E-19 131.1 4.3 75 141-219 71-152 (229)
306 1x4b_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 112.0 8.6 76 136-218 27-107 (116)
307 2bz2_A Negative elongation fac 99.5 1E-13 3.6E-18 112.0 9.9 75 135-218 38-112 (121)
308 2bz2_A Negative elongation fac 99.5 5.8E-14 2E-18 113.5 8.2 74 4-91 38-111 (121)
309 1wf0_A TDP-43, TAR DNA-binding 99.5 2.6E-14 8.7E-19 108.6 5.4 75 4-91 4-78 (88)
310 2nlw_A Eukaryotic translation 99.5 9.9E-14 3.4E-18 109.1 8.9 77 136-217 15-100 (105)
311 3nmr_A Cugbp ELAV-like family 99.5 6.7E-14 2.3E-18 118.7 8.3 79 4-89 94-175 (175)
312 3md3_A Nuclear and cytoplasmic 99.5 5.4E-14 1.8E-18 118.1 7.5 75 5-89 87-165 (166)
313 2pe8_A Splicing factor 45; RRM 99.5 1.1E-13 3.8E-18 109.1 8.7 79 4-91 7-94 (105)
314 2cqg_A TDP-43, TAR DNA-binding 99.5 3.3E-13 1.1E-17 105.4 11.2 76 135-218 14-94 (103)
315 2qfj_A FBP-interacting repress 99.5 7.5E-14 2.6E-18 122.7 8.3 77 5-91 125-205 (216)
316 2pe8_A Splicing factor 45; RRM 99.5 1.8E-13 6E-18 107.9 9.5 80 134-219 6-96 (105)
317 2db1_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 112.3 7.4 77 136-219 17-100 (118)
318 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.6E-19 118.2 2.4 76 6-92 24-106 (123)
319 1wg5_A Heterogeneous nuclear r 99.5 2E-13 6.9E-18 107.1 9.3 77 136-219 15-96 (104)
320 2xs2_A Deleted in azoospermia- 99.5 2.3E-14 7.7E-19 111.9 3.7 76 4-91 8-86 (102)
321 3pgw_A U1-A; protein-RNA compl 99.5 3.4E-12 1.2E-16 117.1 18.9 79 135-219 8-92 (282)
322 2cpy_A RNA-binding protein 12; 99.5 9.5E-14 3.2E-18 110.8 7.1 79 135-220 14-97 (114)
323 2g4b_A Splicing factor U2AF 65 99.5 6.3E-14 2.2E-18 118.8 6.4 75 5-89 94-172 (172)
324 2fc8_A NCL protein; structure 99.5 2.1E-13 7.3E-18 106.2 8.9 75 135-218 14-93 (102)
325 2adc_A Polypyrimidine tract-bi 99.4 2.9E-13 9.8E-18 121.1 10.8 81 134-220 32-113 (229)
326 2hgm_A HNRPF protein, heteroge 99.4 2.4E-14 8.3E-19 116.5 3.3 76 5-92 42-122 (126)
327 1wf0_A TDP-43, TAR DNA-binding 99.4 8.5E-14 2.9E-18 105.7 6.1 73 136-218 5-79 (88)
328 2f3j_A RNA and export factor b 99.4 2.2E-13 7.7E-18 117.4 9.4 79 135-219 87-169 (177)
329 3egn_A RNA-binding protein 40; 99.4 1.6E-13 5.5E-18 113.8 8.0 79 135-219 44-132 (143)
330 1wez_A HnRNP H', FTP-3, hetero 99.4 2.5E-13 8.7E-18 106.3 8.5 75 136-218 15-93 (102)
331 2krb_A Eukaryotic translation 99.4 1.3E-13 4.5E-18 103.0 6.4 65 137-204 2-75 (81)
332 2cjk_A Nuclear polyadenylated 99.4 8E-14 2.7E-18 117.6 5.8 76 5-91 87-166 (167)
333 1fj7_A Nucleolin RBD1, protein 99.4 6.2E-14 2.1E-18 109.1 4.6 76 136-218 17-96 (101)
334 2dit_A HIV TAT specific factor 99.4 4.4E-13 1.5E-17 106.6 9.6 78 135-218 14-103 (112)
335 2hgl_A HNRPF protein, heteroge 99.4 1.2E-13 4.3E-18 113.9 6.6 77 136-219 44-127 (136)
336 2dnl_A Cytoplasmic polyadenyla 99.4 9.3E-14 3.2E-18 110.9 5.6 72 5-89 8-86 (114)
337 1iqt_A AUF1, heterogeneous nuc 99.4 8E-14 2.7E-18 102.3 4.8 69 141-214 2-75 (75)
338 1fje_B Nucleolin RBD12, protei 99.4 9.7E-14 3.3E-18 118.2 5.9 77 4-91 98-174 (175)
339 1wel_A RNA-binding protein 12; 99.4 5.6E-14 1.9E-18 113.8 4.2 76 136-218 25-105 (124)
340 1qm9_A Polypyrimidine tract-bi 99.4 4.6E-13 1.6E-17 116.5 9.6 79 136-220 3-82 (198)
341 2yh0_A Splicing factor U2AF 65 99.4 1.6E-13 5.6E-18 118.9 6.3 78 4-91 113-194 (198)
342 3u1l_A PRE-mRNA-splicing facto 99.4 3.8E-13 1.3E-17 121.0 8.7 78 134-218 132-230 (240)
343 1b7f_A Protein (SXL-lethal pro 99.4 5.8E-13 2E-17 112.2 9.3 77 136-218 3-84 (168)
344 2lcw_A RNA-binding protein FUS 99.1 1.9E-14 6.6E-19 115.1 0.0 77 136-218 7-96 (116)
345 2dnn_A RNA-binding protein 12; 99.4 6.9E-13 2.4E-17 105.2 8.9 74 137-218 17-94 (109)
346 2lmi_A GRSF-1, G-rich sequence 99.4 1.3E-13 4.5E-18 108.7 4.7 77 136-219 11-94 (107)
347 1fxl_A Paraneoplastic encephal 99.4 9E-13 3.1E-17 110.7 10.1 77 136-218 2-83 (167)
348 3v4m_A Splicing factor U2AF 65 99.4 4E-13 1.4E-17 105.9 7.1 79 4-91 4-97 (105)
349 3pgw_S U1-70K; protein-RNA com 99.4 3.1E-13 1.1E-17 132.2 7.9 78 4-91 101-182 (437)
350 2hzc_A Splicing factor U2AF 65 99.4 6.8E-13 2.3E-17 100.1 7.3 69 136-212 6-85 (87)
351 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.5E-13 1.9E-17 104.1 6.9 62 18-91 29-90 (100)
352 1l3k_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 116.3 6.6 78 4-92 103-184 (196)
353 3v4m_A Splicing factor U2AF 65 99.4 9.2E-13 3.1E-17 103.8 8.1 79 135-219 4-99 (105)
354 3ue2_A Poly(U)-binding-splicin 99.4 1E-12 3.4E-17 105.7 7.6 79 4-91 19-109 (118)
355 2voo_A Lupus LA protein; RNA-b 99.4 5.3E-13 1.8E-17 116.6 6.4 74 5-89 109-185 (193)
356 2xs2_A Deleted in azoospermia- 99.4 5.6E-13 1.9E-17 103.9 5.8 75 136-218 9-87 (102)
357 2hgn_A Heterogeneous nuclear r 99.4 3.1E-13 1.1E-17 111.9 4.4 75 136-218 46-124 (139)
358 3s6e_A RNA-binding protein 39; 99.4 1.4E-12 4.7E-17 104.3 7.9 79 4-91 6-93 (114)
359 2dha_A FLJ20171 protein; RRM d 99.3 5E-13 1.7E-17 108.3 4.5 78 136-220 23-108 (123)
360 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-12 6.1E-17 101.2 7.5 65 148-218 27-91 (100)
361 3tht_A Alkylated DNA repair pr 99.3 7.9E-13 2.7E-17 125.0 6.3 77 4-89 17-97 (345)
362 2dnl_A Cytoplasmic polyadenyla 99.3 5.5E-12 1.9E-16 100.5 9.3 71 136-215 8-86 (114)
363 3ue2_A Poly(U)-binding-splicin 99.3 3.5E-12 1.2E-16 102.6 7.9 78 135-218 19-110 (118)
364 3s6e_A RNA-binding protein 39; 99.3 7.3E-12 2.5E-16 100.0 9.7 80 135-220 6-96 (114)
365 2hgm_A HNRPF protein, heteroge 99.3 1.2E-12 3.9E-17 106.6 4.9 76 136-219 42-123 (126)
366 3tht_A Alkylated DNA repair pr 99.3 3.8E-12 1.3E-16 120.3 8.1 78 134-215 16-97 (345)
367 3sde_A Paraspeckle component 1 99.3 1.3E-11 4.6E-16 112.3 10.9 75 136-217 22-96 (261)
368 2j8a_A Histone-lysine N-methyl 99.3 5E-12 1.7E-16 102.1 6.9 73 141-217 5-96 (136)
369 1jmt_A Splicing factor U2AF 35 99.3 5.1E-12 1.7E-16 99.3 6.5 59 21-88 41-103 (104)
370 2j8a_A Histone-lysine N-methyl 99.3 1.9E-12 6.4E-17 104.6 3.9 76 6-91 3-96 (136)
371 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.5E-17 102.2 2.8 67 144-214 21-103 (104)
372 2voo_A Lupus LA protein; RNA-b 99.2 1.6E-11 5.6E-16 107.1 7.3 74 136-216 109-186 (193)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 3.1E-10 1.1E-14 85.8 8.6 76 134-217 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.0 1.8E-09 6.2E-14 86.6 9.9 75 134-215 16-94 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 1.4E-09 4.9E-14 82.2 6.2 57 21-91 30-86 (91)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 2.5E-09 8.5E-14 81.3 6.6 72 134-213 13-91 (95)
377 1owx_A Lupus LA protein, SS-B, 98.9 4.3E-09 1.5E-13 84.4 8.2 75 6-89 19-94 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.8 2.1E-08 7.3E-13 77.8 8.4 71 136-213 21-96 (117)
379 3dxb_A Thioredoxin N-terminall 98.8 1.3E-08 4.4E-13 90.2 8.3 64 19-91 142-213 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 8.7E-09 3E-13 78.3 5.1 54 21-88 39-92 (95)
381 3dxb_A Thioredoxin N-terminall 98.6 3.4E-08 1.2E-12 87.4 6.7 66 150-219 141-215 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.4 5.5E-07 1.9E-11 69.8 6.1 71 5-87 21-96 (117)
383 1wey_A Calcipressin 1; structu 97.8 3.9E-05 1.3E-09 59.1 6.7 75 137-218 6-85 (104)
384 1wey_A Calcipressin 1; structu 97.5 6.8E-05 2.3E-09 57.8 3.9 75 7-92 7-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.3 0.0022 7.4E-08 49.2 9.8 68 136-213 8-80 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.1 0.0015 5.1E-08 51.6 7.5 68 140-213 26-93 (119)
387 3pq1_A Poly(A) RNA polymerase; 97.0 0.00029 1E-08 68.6 2.8 55 5-62 53-107 (464)
388 1whv_A Poly(A)-specific ribonu 96.9 0.0029 1E-07 48.0 7.4 55 136-197 16-70 (100)
389 1whv_A Poly(A)-specific ribonu 96.9 0.0012 4.1E-08 50.1 4.8 53 7-65 18-70 (100)
390 2dhx_A Poly (ADP-ribose) polym 96.7 0.0022 7.5E-08 49.2 5.4 67 6-87 9-80 (104)
391 3ctr_A Poly(A)-specific ribonu 96.6 0.0044 1.5E-07 47.2 6.1 52 145-200 12-63 (101)
392 3ctr_A Poly(A)-specific ribonu 96.5 0.0016 5.5E-08 49.5 3.1 54 7-66 8-61 (101)
393 1uw4_A UPF3X; nonsense mediate 96.3 0.017 5.9E-07 43.4 7.8 75 141-215 4-86 (91)
394 3pq1_A Poly(A) RNA polymerase; 96.2 0.0029 9.8E-08 61.7 4.2 54 137-194 54-107 (464)
395 1wwh_A Nucleoporin 35, nucleop 95.3 0.046 1.6E-06 43.1 6.9 47 20-69 37-83 (119)
396 3p3d_A Nucleoporin 53; structu 95.0 0.014 4.9E-07 46.7 3.2 70 141-216 10-98 (132)
397 1uw4_A UPF3X; nonsense mediate 94.7 0.046 1.6E-06 41.0 5.1 61 8-69 4-70 (91)
398 2l08_A Regulator of nonsense t 94.0 0.13 4.3E-06 39.0 6.2 75 141-215 12-94 (97)
399 3p3d_A Nucleoporin 53; structu 90.0 0.2 6.8E-06 40.0 3.1 60 20-89 20-97 (132)
400 3d45_A Poly(A)-specific ribonu 87.1 1.5 5.1E-05 43.1 7.9 57 136-199 440-496 (507)
401 2l08_A Regulator of nonsense t 83.7 0.79 2.7E-05 34.6 3.1 59 8-70 12-79 (97)
402 3d45_A Poly(A)-specific ribonu 79.4 2.8 9.5E-05 41.2 6.2 50 13-67 447-496 (507)
403 4eyt_A Telomerase associated p 60.1 40 0.0014 24.8 7.2 55 8-67 15-69 (129)
404 2g0c_A ATP-dependent RNA helic 57.2 36 0.0012 23.5 6.6 68 139-215 3-75 (76)
405 3j21_T 50S ribosomal protein L 28.1 1.7E+02 0.0058 21.1 6.2 50 145-194 29-81 (86)
406 2e5p_A Protein PHF1, PHD finge 22.2 45 0.0015 23.0 1.9 20 163-186 28-47 (68)
407 2lfv_A Protein DAMX; cell divi 27.0 20 0.00067 27.2 0.0 47 19-66 35-86 (106)
408 2f06_A Conserved hypothetical 21.1 2.8E+02 0.0095 21.1 12.8 49 152-202 86-136 (144)
409 3uyx_A Hemagglutinin; influenz 20.5 56 0.0019 27.9 2.6 38 3-40 32-71 (214)
410 4fqi_A Hemagglutinin HA1; neut 20.1 37 0.0013 31.0 1.5 39 3-41 83-123 (334)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.9e-32 Score=243.83 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=138.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|||+|||+++++ ++|+++|++||+|.+|.+++ +.++++|||+|.+.++|++|++.||+..+ .
T Consensus 14 p~~tlfVgnLp~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---------~ 83 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE-AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---------K 83 (213)
T ss_dssp -CCEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---------C
Confidence 5789999999999988 79999999999999998886 23456899999999999999999999885 6
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
|+.|++.++........ .....|+ |+||+..+|+++|+++|
T Consensus 84 g~~i~~~~~~~~~~~~~-------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 84 GKPVRIMWSQRDPSLRK-------------------------------------SGVGNIF--IKNLDKSIDNKALYDTF 124 (213)
T ss_dssp TEECEEEECCCCTHHHH-------------------------------------HCTTEEE--EESCCTTCCHHHHHHHH
T ss_pred Ccccccccccccccccc-------------------------------------cccccce--ECCcccccHHHHHHHHH
Confidence 99999998875422111 0133455 99999999999999999
Q ss_pred cccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 160 SAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+.||.|++|+|+.+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+.
T Consensus 125 ~~~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~~a~~~~ 182 (213)
T 4f02_A 125 SAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSRK 182 (213)
T ss_dssp GGGSCEEEEEEEEETTEEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCCHH
T ss_pred hhcCCeEEEEeeccCCCCceE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEcCCCc
Confidence 999999999987543 455 99999999999999999999999999 99999998764
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-31 Score=223.73 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=135.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++.|||..| .|+.
T Consensus 1 R~l~V~nlp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~ 70 (166)
T 3md3_A 1 RVLYVGNLDKAITE-DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI---------ENNI 70 (166)
T ss_dssp CEEEEEEEETTCCH-HHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred CEEEECCCCCcCCH-HHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---------CCCe
Confidence 78999999999988 799999999999999988762 2446899999999999999999999985 6999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|.++....... ...+..|+ |.||+..+|+++|+++|+.|
T Consensus 71 i~v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~f~~~ 111 (166)
T 3md3_A 71 VKINWAFQSQQSS-------------------------------------SDDTFNLF--VGDLNVNVDDETLRNAFKDF 111 (166)
T ss_dssp CEEEECCCCCCCC-------------------------------------CTTCEEEE--EESCCTTCCHHHHHHHHTTS
T ss_pred eEEEEcCCCCCCC-------------------------------------CCCCceEE--ECCCCCCCCHHHHHHHHhcc
Confidence 9999987542110 01245555 99999999999999999999
Q ss_pred CCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecC
Q 019429 163 GPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 216 (341)
Q Consensus 163 G~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~ 216 (341)
|.|.++.+.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||++
T Consensus 112 G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~ 166 (166)
T 3md3_A 112 PSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAAK 166 (166)
T ss_dssp TTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESCC
T ss_pred CCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCc---EEEEEecCC
Confidence 999999987542 355 99999999999999999999999998 999999863
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=9.6e-31 Score=221.91 Aligned_cols=156 Identities=18% Similarity=0.303 Sum_probs=134.1
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
|+|+|+|||+++++ ++|+++|+.||+|.+|.+++.. ++++|||+|.+.++|++|++.|||..+ .|+
T Consensus 3 ~~l~v~nlp~~~~~-~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g~ 72 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQ-EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---------QTK 72 (167)
T ss_dssp SEEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred ceEEEcCCCCCCCH-HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---------CCc
Confidence 78999999999887 7899999999999999887632 336899999999999999999999885 699
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
.|+|.++....... .++.|+ |.||+..+|+++|+++|+.
T Consensus 73 ~l~v~~~~~~~~~~---------------------------------------~~~~l~--v~nl~~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 73 TIKVSYARPSSASI---------------------------------------RDANLY--VSGLPKTMTQKELEQLFSQ 111 (167)
T ss_dssp ECEEEECCCCCGGG---------------------------------------TTCEEE--EESCCTTCCHHHHHHHHGG
T ss_pred eEEEEecCCCcccC---------------------------------------CCCcEE--ECCCCCcCCHHHHHHHHHh
Confidence 99999987542211 134455 9999999999999999999
Q ss_pred cCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 162 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 162 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
||.|.++++.... +|+ |||+|.+.++|.+|++.|||..+.|+ ..+|+|+||
T Consensus 112 ~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 112 YGRIITSRILVDQVTGVSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp GSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred cCCEeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 9999999987543 455 99999999999999999999999987 446999986
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=9.6e-31 Score=222.54 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=135.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+++.. ++++|||+|.+.++|++|++.|||..+ .
T Consensus 2 ~~~~l~v~nlp~~~~~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~ 71 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD-RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---------R 71 (168)
T ss_dssp CCSEEEEECCCTTCCH-HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CccEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---------C
Confidence 3689999999999887 7899999999999999887632 345799999999999999999999985 6
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
|++|+|.+++.+... ..+++|+ |.||+..+|+++|+++|
T Consensus 72 g~~l~v~~~~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 72 NKRLKVSYARPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIF 110 (168)
T ss_dssp TEECEEEECCCCSST---------------------------------------TTTCEEE--EESCCTTCCHHHHHHHH
T ss_pred CcEEEEEecCCCccc---------------------------------------CCCCCEE--EeCCCCCCCHHHHHHhh
Confidence 999999998754211 1245556 99999999999999999
Q ss_pred cccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 160 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+.||.|.++++...+ +|+ |||+|.+.++|.+|++.|||..+.|+ ..+|+|+||
T Consensus 111 ~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 111 GKYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp TSSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred hcCCcEEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence 999999999987643 355 99999999999999999999999883 339999986
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.3e-30 Score=231.14 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=138.4
Q ss_pred cccccccCCC-CCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQ-WQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp-~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++|+|+||+ +++++ ++|+++|+.||+|.+|++++.++ ++|||+|.+.++|++||+.|||..+ .|++|
T Consensus 4 ~~~l~V~nL~~~~~~~-~~L~~~F~~~G~v~~v~i~~~~~-g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l 72 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNC-DRVFNVFCLYGNVEKVKFMKSKP-GAAMVEMADGYAVDRAITHLNNNFM---------FGQKM 72 (205)
T ss_dssp CSEEEEECCCTTTCCH-HHHHHHHTTTSCEEEEEECTTST-TCEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCEEEEeCCCcccCCH-HHHHHHHHhcCCeEEEEEecCCC-CEEEEEECCHHHHHHHHHHhCCCEE---------CCceE
Confidence 4789999999 77776 79999999999999999987544 4799999999999999999999995 59999
Q ss_pred EEEeccCCccccccc------CccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019429 84 RITYSAHTDLSVKFQ------SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 157 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~ 157 (341)
+|.+|+.+....... .....++.+......... .........+++++|+ |.||+.++|+++|++
T Consensus 73 ~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~~~~~p~~~l~--v~NLp~~~t~~~L~~ 142 (205)
T 3tyt_A 73 NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP--------EQAAKNRIQHPSNVLH--FFNAPLEVTEENFFE 142 (205)
T ss_dssp EEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSH--------HHHTTSCCCCCCSEEE--EEEECTTCCHHHHHH
T ss_pred EEEEccCCccCCCcccccccCCccccccCCCccccccCc--------ccccccccCCCcceEE--EeCCCCCCCHHHHHH
Confidence 999998653311000 000011111000000000 0000011234577777 899999999999999
Q ss_pred HHcccCCe--eEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCC-cceEEEEee
Q 019429 158 VFSAFGPV--QKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS 214 (341)
Q Consensus 158 ~F~~fG~v--~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~-~~~l~v~~s 214 (341)
+|+.||.| ++|+++..+ +|+ |||+|++.++|.+|++.|||+.|.+.+ ..++.|.|+
T Consensus 143 ~F~~~G~v~~~~v~~~~~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 143 ICDELGVKRPTSVKVFSGKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHTCCCCSEEEECSCCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHhcCCcceEEEEEEcCCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999999 899987653 355 999999999999999999999998874 236777664
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.8e-30 Score=238.68 Aligned_cols=197 Identities=19% Similarity=0.295 Sum_probs=142.1
Q ss_pred ecccccccCCCCCCCCHHHHH----HHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~----~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+|+|||+|||+++++ ++|+ ++|+.||+|.+|++++ +..+++|||+|.+.++|++|++.|||..|
T Consensus 8 ~~~~l~V~nlp~~~~~-~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--------- 77 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKK-DELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--------- 77 (282)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee---------
Confidence 5799999999999988 6765 8999999999998886 34556899999999999999999999885
Q ss_pred CCceEEEEeccCCccccc-ccC---ccCcC--------CC----CCCCCCCC-----CccCc------------------
Q 019429 79 GPCTLRITYSAHTDLSVK-FQS---HRSRD--------YT----NPYLPVAP-----SAIDA------------------ 119 (341)
Q Consensus 79 ~g~~i~v~~s~~~~l~~~-~~~---~~~~~--------~~----~~~~~~~~-----~~~~~------------------ 119 (341)
.|+.|+|+|++.+...+. ... ++... .. ........ ....+
T Consensus 78 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 699999999975431110 000 00000 00 00000000 00000
Q ss_pred ---------------cCCCccc------------------CCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCee
Q 019429 120 ---------------SGQLSVG------------------LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 166 (341)
Q Consensus 120 ---------------~~~~~~~------------------~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~ 166 (341)
.+..... ........++++|+ |.||+..+|+++|+++|+.||.|+
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF--LTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE--EeCCCCcCCHHHHHHHHHhcCCeE
Confidence 0000000 00001123456666 999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeC-CCCcceEEEEeecC
Q 019429 167 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH 216 (341)
Q Consensus 167 ~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~-~~~~~~l~v~~s~~ 216 (341)
+|++...++|+ |||+|.+.++|.+|++.|||..|. |+ .|+|+|+|.
T Consensus 236 ~v~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk 282 (282)
T 3pgw_A 236 EVRLVPGRHDI-AFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK 282 (282)
T ss_pred EEEEecCCCcE-EEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence 99998877676 999999999999999999999999 87 999999874
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=6.9e-30 Score=229.79 Aligned_cols=189 Identities=26% Similarity=0.322 Sum_probs=143.6
Q ss_pred ecccccccCCCC-CCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQW-QLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~-~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.+++|+|+|||+ ++++ ++|+++|+.||+|.+|.+++..+ ++|||+|.+.++|++|++.|||..| .|+.
T Consensus 33 ~~~~l~V~nLp~~~~te-~~L~~~F~~~G~i~~v~i~~~~~-g~afV~F~~~~~A~~Ai~~l~g~~~---------~g~~ 101 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTP-QSLFILFGVYGDVQRVKILFNKK-ENALVQMADGNQAQLAMSHLNGHKL---------HGKP 101 (229)
T ss_dssp CCSEEEEESCCTTTCCH-HHHHHHHHHHTCEEEEEECCTTS-CCEEEEESCHHHHHHHHHHHTTCBC---------SSSB
T ss_pred CCCEEEEeCCCcccCCH-HHHHHHHHhCCCeEEEEEEECCC-CEEEEEECCHHHHHHHHHHhCCCeE---------CCeE
Confidence 368999999999 6766 89999999999999999887554 4799999999999999999999885 6999
Q ss_pred EEEEeccCCcccccccC----ccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019429 83 LRITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 158 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 158 (341)
|+|.+++.......... ....++......... .... .......+++++|+ |.||+..+|+++|+++
T Consensus 102 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~l~--V~nlp~~~t~~~l~~~ 171 (229)
T 2adc_A 102 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFK-------KPGS-KNFQNIFPPSATLH--LSNIPPSVSEEDLKVL 171 (229)
T ss_dssp CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCC-------STTS-GGGTTCCCSCSEEE--EECCCTTCCHHHHHHH
T ss_pred EEEEEecCccccCccccccccccccccccCcccccC-------Cccc-cccccCCCCCCEEE--EeCCCccCCHHHHHHH
Confidence 99999985532211100 001111110000000 0000 00001123467777 8999999999999999
Q ss_pred HcccC-CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeC-CCCcceEEEEeecCC
Q 019429 159 FSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 217 (341)
Q Consensus 159 F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~-~~~~~~l~v~~s~~~ 217 (341)
|+.|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|++++
T Consensus 172 f~~~G~~i~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~~ 228 (229)
T 2adc_A 172 FSSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 228 (229)
T ss_dssp HHTTSCCEEEEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSSC
T ss_pred HHHcCCCeeEEEEEECCCcE-EEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecCC
Confidence 99999 99999997767786 999999999999999999999998 77 9999999764
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.3e-30 Score=220.49 Aligned_cols=163 Identities=16% Similarity=0.223 Sum_probs=134.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
-|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|++.|||..+.+ .
T Consensus 3 ~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~------~ 75 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSE-KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP------G 75 (175)
T ss_dssp CEEEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT------T
T ss_pred ceEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc------C
Confidence 478999999999888 789999999999999988863 345689999999999999999999988631 2
Q ss_pred CCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019429 79 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 158 (341)
Q Consensus 79 ~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 158 (341)
.++.+++.++....... ..++.|+ |.||+..+|+++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~ 115 (175)
T 3nmr_A 76 MHHPIQMKPADSEKNNA--------------------------------------VEDRKLF--IGMISKKCTENDIRVM 115 (175)
T ss_dssp CSSCCEEEECGGGCCSC--------------------------------------GGGSEEE--EESCCTTCCHHHHHHH
T ss_pred CccceEEcccccccccc--------------------------------------CCCCeEE--EcCCCCcCCHHHHHHH
Confidence 36778887766432110 0144555 9999999999999999
Q ss_pred HcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 159 FSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 159 F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+.||.|++|++.... +|+ |||+|.+.++|.+|++.|||..+.+++.++|+|+||.
T Consensus 116 F~~~G~i~~v~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 116 FSSFGQIEECRILRGPDGLSRGC-AFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HGGGSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhCCCEEEEEEEECCCCCEEEE-EEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999987653 345 9999999999999999999999886322499999973
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.4e-30 Score=229.18 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=137.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+++ +..+++|||+|.+.++|.+|++.|||..| .|
T Consensus 28 ~~~l~V~nLp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g 97 (216)
T 2qfj_A 28 MSRVYVGSIYYELGE-DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---------GG 97 (216)
T ss_dssp HTEEEEECCCTTCCH-HHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---------C-
T ss_pred CCEEEEECCCCCCCH-HHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---------CC
Confidence 478999999999887 79999999999999998875 23456899999999999999999999884 69
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
+.|+|.++............... .....++|+ |.||+..+|+++|+++|+
T Consensus 98 ~~l~v~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~--v~nlp~~~t~~~l~~~f~ 147 (216)
T 2qfj_A 98 RNIKVGRPSNIGQAQPIIDQLAE----------------------------EARAFNRIY--VASVHQDLSDDDIKSVFE 147 (216)
T ss_dssp CCCEEECCSCCGGGHHHHHHHHH----------------------------HHTTSCEEE--EECCCTTCCHHHHHHHHT
T ss_pred eeEEEecCCCccccchhhhhhhc----------------------------ccCCCcEEE--EeCCCCcCCHHHHHHHHh
Confidence 99999887644211000000000 001245566 999999999999999999
Q ss_pred ccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 161 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 161 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
.||.|++|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++...
T Consensus 148 ~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~---~i~V~~a~~~~ 206 (216)
T 2qfj_A 148 AFGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQDAVSSMNLFDLGGQ---YLRVGKAVTPP 206 (216)
T ss_dssp TSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBCSSS---BCEEEECSSCS
T ss_pred ccCCeeEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHHccCCEeCCc---EEEEEEecCCC
Confidence 99999999987642 455 99999999999999999999999999 99999987654
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=9.7e-30 Score=222.95 Aligned_cols=188 Identities=26% Similarity=0.341 Sum_probs=143.0
Q ss_pred cccccccCCCC-CCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQW-QLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~-~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++|+|+|||+ ++++ ++|+++|+.||+|.+|.+++..++ +|||+|.+.++|++|++.|||..| .|+.|
T Consensus 3 ~~~l~v~nlp~~~~~~-~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~---------~g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTP-QSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKL---------HGKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCH-HHHHHHHHTTCCCSEEECSTTCSS-CCEEECTTTHHHHHHHHHHTTCCC---------SSCCC
T ss_pred CcEEEEeCCCcccCCH-HHHHHHHHhcCCEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCee---------cCeEE
Confidence 47899999999 6766 899999999999999998875444 699999999999999999999884 69999
Q ss_pred EEEeccCCcccccccC----ccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 84 RITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
+|.+++.......... ....++........ . ... ........+++++|+ |.||+..+|+++|+++|
T Consensus 72 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~---~~~-~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f 141 (198)
T 1qm9_A 72 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF----K---KPG-SKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLF 141 (198)
T ss_dssp EEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSS----S---SCC-CCCCSCCCCCCCEEE--ECCCCTTCCHHHHHHHH
T ss_pred EEEEecCCCcCCCCcCCccccccccccCCchhhc----c---Ccc-ccccccCCCCccEEE--EeCCCCCCCHHHHHHHH
Confidence 9999985532211100 00111111000000 0 000 000011224577777 99999999999999999
Q ss_pred cccC-CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeC-CCCcceEEEEeecCC
Q 019429 160 SAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 217 (341)
Q Consensus 160 ~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~-~~~~~~l~v~~s~~~ 217 (341)
+.|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. |+ .|+|+|++++
T Consensus 142 ~~~G~~v~~v~i~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~ 197 (198)
T 1qm9_A 142 SSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 197 (198)
T ss_dssp HHTTSCCCEEEESSTTSSC-EEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred HHcCCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence 9999 99999998767787 999999999999999999999998 77 9999999764
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3e-29 Score=218.77 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=131.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++. ++..| .
T Consensus 12 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---------~ 80 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTD-ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---------D 80 (196)
T ss_dssp GGGEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---------C
Confidence 4689999999999987 799999999999999988862 2346899999999999999975 88774 6
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 159 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 159 (341)
|+.|+|.++.......... .....++|+ |.||+..+|+++|+++|
T Consensus 81 g~~l~v~~~~~~~~~~~~~---------------------------------~~~~~~~l~--V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPG---------------------------------AHLTVKKIF--VGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp TEECEEEECCC--------------------------------------------CCSEEE--EECCTTTCCHHHHHHHH
T ss_pred CEEeeeecccCcccccccc---------------------------------cCCCcceEE--EeCCCCCCCHHHHHHHH
Confidence 9999999987542111000 001245566 99999999999999999
Q ss_pred cccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 160 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
+.||.|++|++.... +|+ |||+|.+.++|.+|++. +|..|.|+ .|+|+|+..+..
T Consensus 126 ~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~-~~~~~~G~---~i~v~~a~~k~~ 185 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVIQ-KYHTVNGH---NCEVRKALSKQE 185 (196)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHC-SCCEETTE---ECEEEECC----
T ss_pred hcCCCeEEEEEeecCCCCCccce-EEEEECCHHHHHHHHHh-CCcEECCE---EEEEEecCChhH
Confidence 999999999987542 455 99999999999999986 89999999 999999977653
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=4e-29 Score=213.52 Aligned_cols=153 Identities=20% Similarity=0.306 Sum_probs=130.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhcc----C-------cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY 72 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~f----G-------~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~ 72 (341)
..|+|+|+|||+++++ ++|+++|+.| | .|.++.+.+ ++++|||+|.+.++|++|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~-~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~--- 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITE-EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF--- 75 (172)
T ss_dssp GGGEEEEESCCTTCCH-HHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred cccEEEEcCCCcccCH-HHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEe---
Confidence 4689999999999988 7999999999 6 666766654 4568999999999999999 8999885
Q ss_pred CCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCH
Q 019429 73 LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTL 152 (341)
Q Consensus 73 ~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~ 152 (341)
.|++|+|.+++..... ..++.|+ |+||+..+|+
T Consensus 76 ------~g~~i~v~~~~~~~~~---------------------------------------~~~~~l~--v~nlp~~~t~ 108 (172)
T 2g4b_A 76 ------QGQSLKIRRPHDYQPL---------------------------------------PGAHKLF--IGGLPNYLND 108 (172)
T ss_dssp ------TTEECEEECCSSCCCC---------------------------------------TTTTCEE--EECCCTTCCH
T ss_pred ------cCceeeecCCcccCCC---------------------------------------CCCCEEE--EEcCCCcCCH
Confidence 6999999986643110 0134455 9999999999
Q ss_pred HHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 153 DVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 153 ~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~A 171 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEESSTTHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred HHHHHHHHhcCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCEECCe---EEEEEeC
Confidence 9999999999999999987653 455 99999999999999999999999998 9999997
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=9.9e-29 Score=215.82 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=135.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccC-----------cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFG-----------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 73 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG-----------~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~ 73 (341)
-|+|+|+|||+++++ ++|+++|+.|| .|.++.+.+ ++++|||+|.+.++|++|+ .|||..|
T Consensus 4 ~~~l~V~nLp~~~te-~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~---- 75 (198)
T 2yh0_A 4 ARRLYVGNIPFGITE-EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF---- 75 (198)
T ss_dssp CCEEEEESCCTTCCH-HHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEE----
T ss_pred eeEEEEcCCCCCCCH-HHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEE----
Confidence 489999999999988 79999999994 555555433 4568999999999999999 8999885
Q ss_pred CCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHH
Q 019429 74 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD 153 (341)
Q Consensus 74 ~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~ 153 (341)
.|+.|+|.+++.............. ..+ . .........++.|+ |.||+..+|++
T Consensus 76 -----~g~~i~v~~~~~~~~~~~~~~~~~~--~~~------~-----------~~~~~~~~~~~~l~--v~nl~~~~~~~ 129 (198)
T 2yh0_A 76 -----QGQSLKIRRPHDYQPLPGMSENPSV--YVP------G-----------VVSTVVPDSAHKLF--IGGLPNYLNDD 129 (198)
T ss_dssp -----TTEEEEEECCCCCCCCCCSSSCSSC--CCT------T-----------SSCCCSSCCCCEEE--EECCCTTCCHH
T ss_pred -----cCceEEEeCCCCCCCCCCCcCCCcC--CCC------C-----------CccCCCCCCCCEEE--EeCCCCCCCHH
Confidence 6999999998754221110000000 000 0 00001112356666 99999999999
Q ss_pred HHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 154 VLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 154 ~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
+|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++++.
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEE-EEEEESSSSHHHHHHHHHTTCEETTE---ECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCCC
Confidence 999999999999999987653 455 99999999999999999999999998 99999997654
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.7e-29 Score=213.53 Aligned_cols=155 Identities=10% Similarity=0.167 Sum_probs=130.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
-|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|++. +.. +.|
T Consensus 3 ~~~l~v~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~---------~~g 70 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTE-DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI---------LDG 70 (167)
T ss_dssp GGEEEECSCCTTCCH-HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE---------ETT
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc---------cCC
Confidence 478999999999988 789999999999999988762 3456799999999999999984 444 468
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 160 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 160 (341)
+.|+|.++..+.... .+..|+ |+||+..+|+++|+++|+
T Consensus 71 ~~i~v~~~~~~~~~~---------------------------------------~~~~l~--V~nlp~~~t~~~l~~~F~ 109 (167)
T 2cjk_A 71 KVIDPKRAIPRDEQD---------------------------------------KTGKIF--VGGIGPDVRPKEFEEFFS 109 (167)
T ss_dssp EECCCEECCCHHHHH---------------------------------------HCEEEE--EEEECTTCCHHHHHHHHH
T ss_pred eEcccccccchhhcc---------------------------------------CCCeEE--ECCCCCCCCHHHHHHHHH
Confidence 999988876442111 134455 999999999999999999
Q ss_pred ccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 161 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 161 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
.||.|.+|.+...+ +|+ |||+|.+.++|.+|++ ++|..|.|+ .|+|+||+++
T Consensus 110 ~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i~V~~a~pk 166 (167)
T 2cjk_A 110 QWGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAVDRVCQ-NKFIDFKDR---KIEIKRAEPR 166 (167)
T ss_dssp TTSCCSEEECCCSSSSSTTSEE-EEEEESSHHHHHHHHH-CSEECSSSS---CEEEEECCCC
T ss_pred hCccEEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHh-CCCEEeCCe---EEEEeecCCC
Confidence 99999999986542 466 9999999999999998 899999999 9999999765
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.7e-29 Score=215.57 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=130.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.|+|+|+|||+++++ ++|+++|+.||.|..+.+.. +.++++|||+|.+.++|.+|+ .|||..| .|+
T Consensus 13 ~~~l~V~nLp~~~t~-~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~ 81 (175)
T 1fje_B 13 PFNLFIGNLNPNKSV-AELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---------FGN 81 (175)
T ss_dssp SEEEEEECCCTTSCH-HHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---------TTE
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---------CCe
Confidence 578999999999988 79999999999887632222 345668999999999999999 5999985 699
Q ss_pred eEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019429 82 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 161 (341)
Q Consensus 82 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 161 (341)
+|+|.+++.+.... ...+++|+ |.||+..+|+++|+++|+.
T Consensus 82 ~l~v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRDSKK-------------------------------------VRAARTLL--AKNLSFNITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSSCST-------------------------------------TGGGGEEE--EESCCSSCCHHHHHHHCTT
T ss_pred EEEEecCCCccccc-------------------------------------cccCCEEE--EeCCCCCCCHHHHHHHHHh
Confidence 99999987542110 01245566 9999999999999999999
Q ss_pred cCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 162 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 162 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
||.|..+......+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++++
T Consensus 123 ~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~k 174 (175)
T 1fje_B 123 ALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTGEK 174 (175)
T ss_dssp CSEEEEECSSSSCCSE-EEEECSSHHHHHHHHHHHTEEEETTE---EEEEEECSSC
T ss_pred cCeEEEecCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEecCCC
Confidence 9999877111233676 99999999999999999999999998 9999999765
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.1e-27 Score=221.42 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=138.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+.|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++.|||..| .|
T Consensus 95 ~~~l~v~nlp~~~t~-~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g 164 (284)
T 3smz_A 95 DALLCVANLPPSLTQ-QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---------GP 164 (284)
T ss_dssp SCEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCEEEEcCCCCcCCH-HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 367999999999988 799999999999999987752 2356799999999999999999999885 69
Q ss_pred ceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCC-CHHHHHHHH
Q 019429 81 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV-TLDVLHMVF 159 (341)
Q Consensus 81 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~v-t~~~L~~~F 159 (341)
+.|+|.++..+..... ...+++|+ |.||+..+ |+++|+++|
T Consensus 165 ~~i~v~~a~~~~~~~~------------------------------------~~~~~~l~--v~nlp~~~~~~~~l~~~f 206 (284)
T 3smz_A 165 RTLYVHWTDAGQLTPA------------------------------------LLHSRCLC--VDRLPPGFNDVDALCRAL 206 (284)
T ss_dssp EECEEEECCGGGCCTT------------------------------------TTSCSEEE--EECCCTTCCCHHHHHHHT
T ss_pred cEEEEEECCCCCCCcc------------------------------------cCCccEEE--EecCCcccCCHHHHHHHh
Confidence 9999999875532110 01245566 99999996 999999999
Q ss_pred cccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 160 SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 160 ~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
+.||.|++|++..+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++++..
T Consensus 207 ~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~~~~~ 266 (284)
T 3smz_A 207 SAVHSPTFCQLACGQDGQLKGF-AVLEYETAEMAEEAQQQADGLSLGGS---HLRVSFCAPGPP 266 (284)
T ss_dssp CSSSCCSEEEEEECSSCCEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCSSSC
T ss_pred hCCCCeEEEEEEECCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCe---EEEEEEecCCCc
Confidence 999999999987642 355 99999999999999999999999998 999999987654
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3.1e-27 Score=216.65 Aligned_cols=153 Identities=20% Similarity=0.286 Sum_probs=131.7
Q ss_pred eecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 3 YICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
...++|+|+|||+++|+ ++|+++|+.||+|.+|.+.+ ++++|||+|.+.++|.+|++.|||..| .|+.
T Consensus 20 ~~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i---------~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITE-EDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTIL---------KSRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCH-HHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred CCCCEEEEECCCCCCCH-HHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEE---------CCce
Confidence 34678999999999988 79999999999999998865 456899999999999999999999985 6999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|.++.. +.+|+ |+||+..+|+++|+++|+.|
T Consensus 88 l~v~~a~~---------------------------------------------~~~l~--v~nl~~~~t~~~l~~~F~~~ 120 (261)
T 3sde_A 88 LRIRFATH---------------------------------------------GAALT--VKNLSPVVSNELLEQAFSQF 120 (261)
T ss_dssp CEEEECCC---------------------------------------------SSEEE--EESCCTTCCHHHHHHHHGGG
T ss_pred eEeeeccc---------------------------------------------CCccc--ccCCCCCCCHHHHHHHHHhc
Confidence 99998763 22344 99999999999999999999
Q ss_pred CCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhc-CceeC---CCCcceEEEEeecCCC
Q 019429 163 GPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALE-GHCIY---DGGFCKLHISYSRHTD 218 (341)
Q Consensus 163 G~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~-g~~i~---~~~~~~l~v~~s~~~~ 218 (341)
|.|.+|++..+. +|+ |||+|.+.++|.+|++.|| |..+. ++ +|.|++++..+
T Consensus 121 G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~r---~i~v~~~~~~~ 180 (261)
T 3sde_A 121 GPVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERCGDGAFLLTTTPR---PVIVEPMEQFD 180 (261)
T ss_dssp SCEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHHHHSCEESSSSCC---BCEEEECCCEE
T ss_pred CCeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHhcCCeEEecCCCc---eEEEeeccccC
Confidence 999999987543 455 9999999999999999995 55554 66 99999987653
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3e-27 Score=219.40 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=135.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccC-cceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFG-FVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG-~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|+|+|||+++++ ++|+++|+.|| +|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .
T Consensus 116 ~~~~l~v~nlp~~~t~-~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 185 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQ-RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---------E 185 (292)
T ss_dssp CSCEEEEECCCTTCCH-HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------C
Confidence 3578999999999987 78999999999 999998876 23456899999999999999999999985 6
Q ss_pred CceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCC-CCHHHHHHH
Q 019429 80 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA-VTLDVLHMV 158 (341)
Q Consensus 80 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~-vt~~~L~~~ 158 (341)
|+.|+|.++..+...... + .....+++|+ |.||+.. +|+++|+++
T Consensus 186 g~~l~v~~a~~~~~~~~~------~--------------------------~~~~~~~~l~--v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRT------D--------------------------SATLEGREIM--IRNLSTELLDENLLRES 231 (292)
T ss_dssp TEECEEEECCCC-----------------------------------------CCTTTEEE--EEEECTTTCCHHHHHHH
T ss_pred CcEEEEEECCCCcccccc------c--------------------------ccCCCCceEE--EECCCcccCCHHHHHHH
Confidence 999999998855221100 0 0012356666 8999999 999999999
Q ss_pred HcccCCeeEEEEEcCC------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 159 FSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 159 F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
|+.||.|++|++..+. +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+|+|++++
T Consensus 232 F~~~G~v~~v~i~~~~~~tg~~~g~-afV~F~~~~~A~~A~-~l~g~~~~g~---~i~V~~a~~k 291 (292)
T 2ghp_A 232 FEGFGSIEKINIPAGQKEHSFNNCC-AFMVFENKDSAERAL-QMNRSLLGNR---EISVSLADKK 291 (292)
T ss_dssp HGGGSCEEEEECCSCCC---CCCEE-EEEEESSHHHHHHHG-GGTTEEETTE---EEEEEECCCC
T ss_pred HhccCCeeEEEEEecCCcCCCCceE-EEEEeCCHHHHHHHH-HhcCCEECCc---EEEEEEecCC
Confidence 9999999999987542 465 999999999999999 9999999998 9999999765
No 19
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.94 E-value=4.2e-27 Score=192.63 Aligned_cols=108 Identities=49% Similarity=0.747 Sum_probs=99.7
Q ss_pred CCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 131 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 131 ~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
....++++|+|+|+||++.+|+++|+++|++||+|.+|+|+.+++|++|||+|.+.++|.+|++.|||..|+++ ||.|+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~Lr 99 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLR 99 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEE
Confidence 34467999999999999999999999999999999999999888888899999999999999999999999996 88999
Q ss_pred EEeecCCCCccccCCCCCCCCCCCCCCCC
Q 019429 211 ISYSRHTDLSIKVNNDRSRDYTLPSTPMV 239 (341)
Q Consensus 211 v~~s~~~~~~~~~~~~~~~d~~~~~~~~~ 239 (341)
|+||+.+++.++.|++++||||+|.+|..
T Consensus 100 I~~ak~~~l~v~~n~~~srDyt~~~lp~~ 128 (130)
T 3zzy_A 100 IDFSKLTSLNVKYNNDKSRDYTRPDLPSG 128 (130)
T ss_dssp EEECSCSSCCCCCCSSSEEETTCTTCCSS
T ss_pred EEecCCCceeEEecCCCcccCCCCCCCCC
Confidence 99999999999999999999999998764
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.3e-26 Score=214.30 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=132.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..|+|+|+|||+++++ ++|+++|+.|| |.+|.+. .++++|||+|.+.++|.+|++.|||..| .|+.|
T Consensus 21 ~~~~l~V~nLp~~~te-~~l~~~F~~~G-i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g~~i 87 (284)
T 3smz_A 21 NRRKILIRGLPGDVTN-QEVHDLLSDYE-LKYCFVD--KYKGTAFVTLLNGEQAEAAINAFHQSRL---------REREL 87 (284)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHTTTSC-EEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHcC-CEEEEEe--cCCCEEEEEeCCHHHHHHHHHHcCCCee---------CCeEE
Confidence 4688999999999988 78999999999 9998873 3456899999999999999999999985 69999
Q ss_pred EEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019429 84 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 163 (341)
Q Consensus 84 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 163 (341)
+|+++.. +.+|+ |+||+..+|+++|+++|+.||
T Consensus 88 ~v~~~~~---------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 88 SVQLQPT---------------------------------------------DALLC--VANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp EEEECCC---------------------------------------------SCEEE--EESCCTTCCHHHHHHHHGGGS
T ss_pred EEEecCC---------------------------------------------CCEEE--EcCCCCcCCHHHHHHHHHhcC
Confidence 9997441 23444 999999999999999999999
Q ss_pred CeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 164 PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 164 ~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|++....
T Consensus 121 ~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~a~~~~~ 177 (284)
T 3smz_A 121 SLERCFLVYSERTGQSKGY-GFAEYMKKDSAARAKSDLLGKPLGPR---TLYVHWTDAGQL 177 (284)
T ss_dssp CEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCGGGC
T ss_pred CeeEEEEEeeCCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCCC
Confidence 99999876532 355 99999999999999999999999998 999999976653
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.1e-26 Score=215.71 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=130.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++ |||..| .|+.
T Consensus 41 ~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---------~g~~ 109 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQ-NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---------GQNE 109 (292)
T ss_dssp -CEEEEEEECTTCCH-HHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---------TTEE
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---------CCcE
Confidence 589999999999988 789999999999999988872 234689999999999999995 999884 6999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|.++. +++|+ |+|||..+|+++|+++|+.|
T Consensus 110 i~v~~~~----------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~ 141 (292)
T 2ghp_A 110 IIVSHLT----------------------------------------------ECTLW--MTNFPPSYTQRNIRDLLQDI 141 (292)
T ss_dssp CEEEECC----------------------------------------------SCEEE--EECCCTTCCHHHHHHHHHHT
T ss_pred EEEEECC----------------------------------------------CCEEE--EECCCCCCCHHHHHHHHHHh
Confidence 9999753 23455 99999999999999999999
Q ss_pred C-CeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 163 G-PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 163 G-~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
| .|.+|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+.+..
T Consensus 142 G~~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 198 (292)
T 2ghp_A 142 NVVALSIRLPSLRFNTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGY---TLVTKVSNPLE 198 (292)
T ss_dssp TCCCCEEECC-------CCE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCCC-
T ss_pred CCCeEEEEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCc
Confidence 9 9999998653 3566 99999999999999999999999998 99999987654
No 22
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.92 E-value=6.6e-25 Score=178.65 Aligned_cols=102 Identities=43% Similarity=0.670 Sum_probs=96.3
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
+++++|+|+|+||++.+|+++|+++|++||.|++|+|+.++ ||+|||+|++.++|.+|++.|||..|+++ ||.|+|+|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence 46899999999999999999999999999999999998764 86799999999999999999999999997 77999999
Q ss_pred ecCCCCccccCCCCCCCCCCCCCC
Q 019429 214 SRHTDLSIKVNNDRSRDYTLPSTP 237 (341)
Q Consensus 214 s~~~~~~~~~~~~~~~d~~~~~~~ 237 (341)
|+.+++.++.+++++||||+|.+|
T Consensus 99 Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CSCSCCCCSSCSSSEEESSCCCCC
T ss_pred ecCCcceeecCCCCCCCCCCCCCC
Confidence 999999999999999999999876
No 23
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.91 E-value=3.7e-24 Score=181.59 Aligned_cols=110 Identities=51% Similarity=0.741 Sum_probs=97.7
Q ss_pred CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 133 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 133 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.++++++.|+|+||++.+|+++|+++|++||+|++|+|+.++ +|+ |||+|++.++|.+|++.|||..|++. ||.|+|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf-AFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V 118 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ-ALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 118 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE-EEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE-EEEEECCHHHHHHHHHHhCCCEecCC-CcEEEE
Confidence 456899999999999999999999999999999999998665 455 99999999999999999999999885 569999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 019429 212 SYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 244 (341)
Q Consensus 212 ~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 244 (341)
+||+.+++.++.+++++|||++|.++....+++
T Consensus 119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~ 151 (164)
T 1sjr_A 119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS 151 (164)
T ss_dssp EECSSSSCCCCCCSSSEEESSCSCCCCCC----
T ss_pred EEecCCcccccccCCCCccccCCCCCCCCCCCC
Confidence 999999999999999999999999887665443
No 24
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.88 E-value=4.8e-23 Score=168.56 Aligned_cols=99 Identities=42% Similarity=0.640 Sum_probs=90.2
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
.|+|+||++.+++ ++|+++|++||+|.+|+++++.++++|||+|.+.++|++|++.|||+.|+ .++++|+|+
T Consensus 30 ~I~V~NL~~~vte-~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-------g~~~~LrI~ 101 (130)
T 3zzy_A 30 RIIVENLFYPVTL-DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLRID 101 (130)
T ss_dssp EEEEESCCSCCCH-HHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-------TTEEEEEEE
T ss_pred EEEECCCCCCCCH-HHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-------CCCcEEEEE
Confidence 4679999999888 79999999999999999988776767999999999999999999999986 245999999
Q ss_pred eccCCcccccccCccCcCCCCCCCCCC
Q 019429 87 YSAHTDLSVKFQSHRSRDYTNPYLPVA 113 (341)
Q Consensus 87 ~s~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (341)
||+.+++.++.+++++|||++|+++..
T Consensus 102 ~ak~~~l~v~~n~~~srDyt~~~lp~~ 128 (130)
T 3zzy_A 102 FSKLTSLNVKYNNDKSRDYTRPDLPSG 128 (130)
T ss_dssp ECSCSSCCCCCCSSSEEETTCTTCCSS
T ss_pred ecCCCceeEEecCCCcccCCCCCCCCC
Confidence 999999999999999999999988754
No 25
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.86 E-value=1.3e-21 Score=165.84 Aligned_cols=102 Identities=41% Similarity=0.612 Sum_probs=91.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
+..|+|+||++++++ ++|+++|++||+|.+|+++++.++++|||+|.+.++|++|++.|||+.|+ ..+++|+
T Consensus 46 vl~l~VgNL~~~vte-d~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-------g~g~~L~ 117 (164)
T 1sjr_A 46 VLRIIVENLFYPVTL-DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLR 117 (164)
T ss_dssp EEEEEECSCCSCCCH-HHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS-------SSCSCEE
T ss_pred eEEEEEeCcCCCCCH-HHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCcEEE
Confidence 456899999999888 79999999999999999987666778999999999999999999999985 2469999
Q ss_pred EEeccCCcccccccCccCcCCCCCCCCCCC
Q 019429 85 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 114 (341)
Q Consensus 85 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (341)
|+||+.+++.++.++.++|||+++.++...
T Consensus 118 V~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~ 147 (164)
T 1sjr_A 118 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 147 (164)
T ss_dssp EEECSSSSCCCCCCSSSEEESSCSCCCCCC
T ss_pred EEEecCCcccccccCCCCccccCCCCCCCC
Confidence 999999999999999999999999887654
No 26
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.3e-21 Score=157.65 Aligned_cols=96 Identities=36% Similarity=0.532 Sum_probs=85.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
.|+|.||+|.+++ ++|+++|++||+|.+|+++++ .|++|||+|.+.++|.+|++.|||.+|+ .++++|+|+
T Consensus 27 ~l~V~NL~~~vt~-~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~-------g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITV-DVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIY-------AGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCH-HHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCB-------TTBSEEEEE
T ss_pred EEEEcCcCCCCCH-HHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCeEEEEE
Confidence 3679999999887 799999999999999998875 4556999999999999999999999985 234799999
Q ss_pred eccCCcccccccCccCcCCCCCCCC
Q 019429 87 YSAHTDLSVKFQSHRSRDYTNPYLP 111 (341)
Q Consensus 87 ~s~~~~l~~~~~~~~~~~~~~~~~~ 111 (341)
||+.+.+.++.++.++|||++|.++
T Consensus 98 ~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 98 YARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred EecCCcceeecCCCCCCCCCCCCCC
Confidence 9999999999999999999998765
No 27
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.9e-20 Score=157.21 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=107.1
Q ss_pred cCCceEEEEeCCHHHHHHHHHHh-cCCCcCCcCCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCcc
Q 019429 42 TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 120 (341)
Q Consensus 42 ~~g~~aFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
.-+++++|+|.+.++|++|++.| ||..| .| .|++.++..+.............
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---------~G-~~~~~~a~~~~~~~~~~~~~~~~---------------- 64 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---------DG-EWTYDDATKTFTVTEGSHHHHHH---------------- 64 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---------CC-EEEEETTTTEEEEECSSSSCCCC----------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---------CC-ceecccccCcccccccccccccc----------------
Confidence 34457999999999999999999 99885 57 99999877542211100000000
Q ss_pred CCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCce
Q 019429 121 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 200 (341)
Q Consensus 121 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~ 200 (341)
.........+.|+ |+||+..+|+++|+++|+.||.|.+|++..+++|+ |||+|.+.++|.+|++.|||..
T Consensus 65 -------~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 65 -------MHRDSCPLDCKVY--VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGF-AFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp -------SCSSSSTTSCEEE--EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSE-EEEEESSHHHHHHHHHHHSSSC
T ss_pred -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcE-EEEEECCHHHHHHHHHHcCCCE
Confidence 0000112356666 99999999999999999999999999998876787 9999999999999999999999
Q ss_pred eCCCCcceEEEEeecCC
Q 019429 201 IYDGGFCKLHISYSRHT 217 (341)
Q Consensus 201 i~~~~~~~l~v~~s~~~ 217 (341)
|.|+ .|+|+|++.+
T Consensus 135 ~~g~---~l~v~~a~~~ 148 (150)
T 2i2y_A 135 LCGC---RVRVELSNGE 148 (150)
T ss_dssp SSSS---CCEEEECCCC
T ss_pred ECCe---EEEEEEcCCC
Confidence 9999 9999998765
No 28
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.1e-19 Score=153.58 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=98.1
Q ss_pred ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCcc
Q 019429 41 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 120 (341)
Q Consensus 41 ~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (341)
...+++|||+|.+.++|++|++.+++... .+..+.+........... ......
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~---------------- 62 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG---------VDGEWTYDDATKTFTVTE--GSHHHH---------------- 62 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHT---------CCCEEEEETTTTEEEEEC--CCCCSS----------------
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCC---------CCCcccccCccccccccc--cccccc----------------
Confidence 44567899999999999999999987552 122233322111100000 000000
Q ss_pred CCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHH
Q 019429 121 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 195 (341)
Q Consensus 121 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~ 195 (341)
.........+|+ |+||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.
T Consensus 63 --------~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 63 --------HHMDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp --------CCCCCCBCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHHHHH
T ss_pred --------cccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHH
Confidence 000012245555 9999999999999999999999999998653 3566 99999999999999999
Q ss_pred hcCceeCCCCcceEEEEeecCCC
Q 019429 196 LEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 196 l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|||..|.|+ .|+|+|++...
T Consensus 132 l~g~~~~g~---~l~v~~a~~~~ 151 (158)
T 2kn4_A 132 MDGAVLDGR---ELRVQMARYGR 151 (158)
T ss_dssp STTEESSSS---EEEEEEECCSS
T ss_pred hCCCEECCe---EEEEEECCCCC
Confidence 999999999 99999998654
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=3.1e-20 Score=149.14 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=67.5
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..|||+|||+++++ ++|+++|+.||+|.+|.+++. .+++||||+|.+.|+|++||+.|||..| .|+.|
T Consensus 6 ~~lfV~nLp~~~te-~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---------~g~~i 75 (115)
T 4f25_A 6 GNIFIKNLDKSIDN-KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRKV 75 (115)
T ss_dssp CEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CEEEECCCCCCCCH-HHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE---------CCEEE
Confidence 46999999999887 799999999999999988763 2356899999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 76 ~V~~a~~~ 83 (115)
T 4f25_A 76 FVGRFKSR 83 (115)
T ss_dssp EEEESSCC
T ss_pred EEEECCCc
Confidence 99998754
No 30
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=143.71 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=72.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|.|+|+|||+++++ ++|+++|++||+|.+|++++ .+++|||+|.+.++|.+|++.||+..+. +.|++|
T Consensus 20 ps~~l~V~NLp~~~te-~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~-------i~Gr~i 89 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVE-ADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHPA 89 (100)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEE-------ETTEEE
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCce-------eCCcEE
Confidence 5789999999999987 79999999999999999886 4468999999999999999999998753 579999
Q ss_pred EEEeccCCcc
Q 019429 84 RITYSAHTDL 93 (341)
Q Consensus 84 ~v~~s~~~~l 93 (341)
+|+||+.++|
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999998765
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=137.34 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=70.6
Q ss_pred CceecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCC
Q 019429 1 MFYICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 76 (341)
Q Consensus 1 ~~~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 76 (341)
++|...+|+|+|||+++++ ++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|++|++.|||..|
T Consensus 15 ~~~~gt~lfV~nLp~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~------- 86 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQ-DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL------- 86 (99)
T ss_dssp -CCCCSEEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-------
T ss_pred ccCCCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-------
Confidence 3667788999999999988 79999999999999998876 23456899999999999999999999985
Q ss_pred CCCCceEEEEeccC
Q 019429 77 NMGPCTLRITYSAH 90 (341)
Q Consensus 77 ~~~g~~i~v~~s~~ 90 (341)
.|++|+|+||++
T Consensus 87 --~gr~l~V~~AkP 98 (99)
T 4fxv_A 87 --QSKTIKVSYARP 98 (99)
T ss_dssp --TTEECEEEECCB
T ss_pred --CCEEEEEEEeeC
Confidence 699999999875
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=137.05 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=69.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC--CCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng--~~i~~~~~~~~~~g~ 81 (341)
..+.|+|+|||+++++ ++|+++|++||+|.+|.+++. ++||||+|.+.++|++|++.|++ .. +.|+
T Consensus 15 ~~~~LfV~nLp~~vte-~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~---------l~Gr 82 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTE-GEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV---------LRGQ 82 (105)
T ss_dssp CCCEEEECSCCTTSCH-HHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCE---------ETTE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCce---------ECCE
Confidence 3578999999999877 799999999999999998873 56899999999999999999975 45 4799
Q ss_pred eEEEEeccCCcccc
Q 019429 82 TLRITYSAHTDLSV 95 (341)
Q Consensus 82 ~i~v~~s~~~~l~~ 95 (341)
+|+|+||+.+.+..
T Consensus 83 ~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 83 PIYIQFSNHKELKT 96 (105)
T ss_dssp ECCBCCCSSSSCCC
T ss_pred EEEEEEcCCCCCCc
Confidence 99999999776553
No 33
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=135.02 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=70.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++.|+|+|||+++++ ++|+++|++||+|.+|++++ .+++|||+|.+.++|.+|++.||+..+. +.|++|
T Consensus 14 p~~~l~V~nLp~~~te-~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------i~Gr~l 83 (104)
T 1wex_A 14 VSPVVHVRGLCESVVE-ADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVY-------IAGQQA 83 (104)
T ss_dssp CCSEEEEESCCSSCCH-HHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCB-------SSSSBC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEEE
Confidence 3689999999999887 79999999999999998876 3568999999999999999999876532 579999
Q ss_pred EEEeccCCccc
Q 019429 84 RITYSAHTDLS 94 (341)
Q Consensus 84 ~v~~s~~~~l~ 94 (341)
+|+|++.+.+.
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999977554
No 34
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=139.37 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=70.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++.|+|+|||+++++ ++|+++|++||+|.+|.+++. +++|||+|.+.++|++|++.|++..+. +.|++|
T Consensus 30 ps~~LfVgNLp~~vte-~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~-------l~Gr~l 99 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTE-GEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV-------LRGQPI 99 (119)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCC-------BTTBCC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCce-------ECCeEE
Confidence 4688999999999877 799999999999999998873 468999999999999999999853211 579999
Q ss_pred EEEeccCCcccc
Q 019429 84 RITYSAHTDLSV 95 (341)
Q Consensus 84 ~v~~s~~~~l~~ 95 (341)
+|+||+.+++..
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999999876654
No 35
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=130.88 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=71.8
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCce--eCCCCcceEEE
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 211 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~--i~~~~~~~l~v 211 (341)
+++++|+ |+||+..+|+++|+++|++||.|++|++.+.+ |+ |||+|++.++|.+|++.||+.. |.|+ +|+|
T Consensus 19 ~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~V 91 (100)
T 3r27_A 19 PASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQ-ALVEFEDVLGACNAVNYAADNQIYIAGH---PAFV 91 (100)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCEEETTE---EEEE
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhcCCCceeCCc---EEEE
Confidence 4688887 99999999999999999999999999998654 65 9999999999999999999986 6788 9999
Q ss_pred EeecCCCC
Q 019429 212 SYSRHTDL 219 (341)
Q Consensus 212 ~~s~~~~~ 219 (341)
+||+.+++
T Consensus 92 ~~S~~k~l 99 (100)
T 3r27_A 92 NYSTSQKI 99 (100)
T ss_dssp EECSCSCC
T ss_pred Eecccccc
Confidence 99998775
No 36
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=136.50 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=69.0
Q ss_pred ecccccccCCCC-CCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQW-QLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~-~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.+|.|+|+|||+ ++++ ++|+++|++||+|.+|++++. +++|||+|.+.++|.+||+.||+.... +.|++
T Consensus 14 p~~~l~V~nLp~~~~te-~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~ 83 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLR-YQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPAL-------VFGKP 83 (102)
T ss_dssp CCCEEEEESCCCSSSHH-HHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCE-------ETTEE
T ss_pred CCCEEEEeCCCCCcCCH-HHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCce-------ECCcE
Confidence 478999999999 7776 799999999999999998863 357999999999999999999986522 47999
Q ss_pred EEEEeccC-Cccc
Q 019429 83 LRITYSAH-TDLS 94 (341)
Q Consensus 83 i~v~~s~~-~~l~ 94 (341)
|+|+||+. +++.
T Consensus 84 l~V~~a~~~~~~~ 96 (102)
T 1x4d_A 84 VRVHLSQKYKRIK 96 (102)
T ss_dssp CEEEEECCCTTSS
T ss_pred EEEEECCCCCCCC
Confidence 99999984 4443
No 37
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-18 Score=134.14 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=69.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++.|+|+|||+++++ ++|+++|++||+|.+|++++. +++|||+|.+.++|++|++.|++..+. +.|++|
T Consensus 14 p~~~l~V~nLp~~~te-~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~l 83 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTE-TEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPH-------LRNQPI 83 (101)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCE-------ETTEEC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCce-------ECCcEE
Confidence 4688999999999887 799999999999999988863 568999999999999999988643221 479999
Q ss_pred EEEeccCCcccc
Q 019429 84 RITYSAHTDLSV 95 (341)
Q Consensus 84 ~v~~s~~~~l~~ 95 (341)
+|+|++.+.+..
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999776553
No 38
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=2.6e-18 Score=137.49 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=86.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.+|+|+|+|||+++++ ++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.
T Consensus 7 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNLPYKITA-EEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---------SNRY 76 (115)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---------SSCB
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeE
Confidence 4789999999999988 78999999999999998876 33456799999999999999999999985 6999
Q ss_pred EEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019429 83 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 162 (341)
Q Consensus 83 i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 162 (341)
|+|.+++.+.. ..+++...++++|.++|++|
T Consensus 77 l~v~~a~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 77 LVVLYYNANRA-------------------------------------------------FQKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp CEEEECCHHHH-------------------------------------------------TTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCChh-------------------------------------------------hhhhhHhHhHHHHHHHHHHh
Confidence 99999885421 13455677899999999999
Q ss_pred CC
Q 019429 163 GP 164 (341)
Q Consensus 163 G~ 164 (341)
|-
T Consensus 108 g~ 109 (115)
T 3lqv_A 108 GI 109 (115)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 39
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-18 Score=135.39 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=68.0
Q ss_pred ecccccccCCCCC-CCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQ-LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~-~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.++.|+|+|||++ +++ ++|+++|++||+|.+|++++ ++++|||+|.+.++|++|++.||+..+. +.|++
T Consensus 24 p~~~l~V~NLp~~~~te-~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------l~Gr~ 93 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSD-SAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALW-------FQGRC 93 (112)
T ss_dssp CCCEEEEESCCCSSCCS-HHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCC-------SSSSC
T ss_pred CCCEEEEeCCCCccCCH-HHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEE
Confidence 4689999999998 877 79999999999999999875 4568999999999999999999865422 57999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|+||+.+
T Consensus 94 l~V~~a~~~ 102 (112)
T 1x4f_A 94 VKVDLSEKY 102 (112)
T ss_dssp CEEEEECSC
T ss_pred EEEEECccc
Confidence 999999854
No 40
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.7e-17 Score=125.60 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=66.1
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEE
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 86 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~ 86 (341)
.|+|+||++++++ ++|+++|++||+|.++.+.. +++||||||.|.++|++|++.|||.++ .|++|+|+
T Consensus 9 wL~VgNL~~~~te-~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l---------~gr~I~V~ 76 (89)
T 2wbr_A 9 WLLLKNLTAQIDG-PTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVL---------ANTTIFAE 76 (89)
T ss_dssp EEEEECCCTTCCC-HHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEE
T ss_pred eEEEeCCCccCCH-HHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEE---------CCcEEEEE
Confidence 5889999999999 79999999999999998875 456899999999999999999999985 69999999
Q ss_pred eccCC
Q 019429 87 YSAHT 91 (341)
Q Consensus 87 ~s~~~ 91 (341)
+++..
T Consensus 77 ~A~e~ 81 (89)
T 2wbr_A 77 SPSEN 81 (89)
T ss_dssp CCCHH
T ss_pred ECCHH
Confidence 98643
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=128.10 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=67.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+|||..+|+++|+++|+.||+|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 19 gt~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l~ 92 (99)
T 4fxv_A 19 GTNLI--VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY-GFVNYVTAKDAERAINTLNGLRLQSK---TIK 92 (99)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccccc-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 55666 99999999999999999999999999987532 355 99999999999999999999999999 999
Q ss_pred EEeecC
Q 019429 211 ISYSRH 216 (341)
Q Consensus 211 v~~s~~ 216 (341)
|+||++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999976
No 42
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=125.84 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCce--eCCCCcceEEE
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 211 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~--i~~~~~~~l~v 211 (341)
+++++|+ |+||++.+|+++|+++|++||.|++|+|.+. +|+ |||+|++.++|.+|++.|++.. |.|+ .|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V 85 (104)
T 1wex_A 13 SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQ-ALVEFENIDSAKECVTFAADVPVYIAGQ---QAFF 85 (104)
T ss_dssp CCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 4577877 9999999999999999999999999998875 465 9999999999999999997654 8888 9999
Q ss_pred EeecCCCCc
Q 019429 212 SYSRHTDLS 220 (341)
Q Consensus 212 ~~s~~~~~~ 220 (341)
+|++.+..+
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999887765
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=131.51 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=69.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|.|+|+||++++++ ++|+++|++||+|.+|.+++ +.++++|||+|.+.++|++||+.|||..| .
T Consensus 5 p~~~lfV~nL~~~~te-~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---------~ 74 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRE-TFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---------M 74 (110)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCcEEEEECCCCCCCH-HHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 5789999999999988 79999999999999998876 23456899999999999999999999995 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|+++...
T Consensus 75 gr~i~V~~a~~~ 86 (110)
T 3s8s_A 75 GNIIHAQLDIKG 86 (110)
T ss_dssp TEECEEEECSTT
T ss_pred CeEEEEEECCCC
Confidence 999999998754
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=127.52 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=71.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC--ceeCCCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g--~~i~~~~~~~l~v~ 212 (341)
++++|+ |+||++.+|+++|+++|++||+|++|+|.+.+ |+ |||+|++.++|.+|++.|++ ..|.|+ +|+|+
T Consensus 15 ~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-Gf-aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V~ 87 (105)
T 1sjq_A 15 PSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQ 87 (105)
T ss_dssp CCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTSCCEETTE---ECCBC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEEE
Confidence 466777 99999999999999999999999999998764 66 99999999999999999874 789998 99999
Q ss_pred eecCCCCc
Q 019429 213 YSRHTDLS 220 (341)
Q Consensus 213 ~s~~~~~~ 220 (341)
||+.+.++
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99887765
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=123.71 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=69.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 4 ~~~~l~v~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 73 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITE-DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---------A 73 (95)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---------S
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---------C
Confidence 4789999999999888 789999999999999988872 2456899999999999999999999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|++++.+
T Consensus 74 g~~l~V~~a~~~ 85 (95)
T 2dnz_A 74 GRPMRVGHVTER 85 (95)
T ss_dssp SSCCEEEESSCC
T ss_pred CcEEEEEEcccc
Confidence 999999999865
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=127.75 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC--ceeCCCCcceEEE
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI 211 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g--~~i~~~~~~~l~v 211 (341)
+++++|+ |+||++.+|+++|+++|++||.|++|+|...+ |+ |||+|++.++|.+|++.|++ ..|.|+ +|+|
T Consensus 29 ~ps~~Lf--VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~-AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~V 101 (119)
T 2ad9_A 29 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 101 (119)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TE-EEEECSCHHHHHHHHHHHHHHCCCBTTB---CCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhccCCceECCe---EEEE
Confidence 3577777 99999999999999999999999999998764 65 99999999999999999984 689998 9999
Q ss_pred EeecCCCCc
Q 019429 212 SYSRHTDLS 220 (341)
Q Consensus 212 ~~s~~~~~~ 220 (341)
+||+.+.++
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999888765
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=127.90 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=67.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCc--ceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGF--VHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~--V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
..+|+|+|||+++|+ ++|+++|++||. |.+|++.+ +.+++||||+|.+.++|++|++.|||.... -.+
T Consensus 9 m~tlfV~nL~~~~te-e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~-----~~i 82 (95)
T 2lkz_A 9 MDTIILRNIAPHTVV-DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP-----LKI 82 (95)
T ss_dssp CCEEEEESCCTTCCH-HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC-----EEE
T ss_pred cCEEEEeCCCCcCCH-HHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC-----ceE
Confidence 468999999999988 789999999995 67888776 345668999999999999999999997510 014
Q ss_pred CCceEEEEeccC
Q 019429 79 GPCTLRITYSAH 90 (341)
Q Consensus 79 ~g~~i~v~~s~~ 90 (341)
.||+|+|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 799999999874
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=122.58 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=67.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 5 ~~~~l~v~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 74 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITT-AAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------G 74 (87)
T ss_dssp -CEEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CceEEEEeCCCCCCCH-HHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4789999999999877 799999999999999988763 2345799999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 75 g~~l~v~~a~~k 86 (87)
T 3bs9_A 75 GRQIRTNWATRK 86 (87)
T ss_dssp TEECEEEEEC--
T ss_pred CeEEEEEecCCC
Confidence 999999998754
No 49
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.6e-17 Score=121.49 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=66.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
|+|+||++.+|+++|+++|++||+|+++++.. ++|| |||+|.+.++|.+|++.|||.+++++ +|+|++|...
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGf-aFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~e~ 81 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGI-ALCKYTTREEANKAQMALNNCVLANT---TIFAESPSEN 81 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCCHH
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcE-EEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECCHH
Confidence 44999999999999999999999999999876 4577 99999999999999999999999999 9999999543
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=127.88 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=65.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccC-cceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFG-FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG-~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
+.|+|+|||+++|+ ++|+++|++|| +|.+|.+++ +.++++|||+|.+.|+|++|++.|++... +.|
T Consensus 2 ~~i~v~nLp~~~te-~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--------~~g 72 (91)
T 2lxi_A 2 NIVMLRMLPQAATE-DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--------ILG 72 (91)
T ss_dssp CEEEEETCCSSCCH-HHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--------ETT
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--------ECC
Confidence 57999999999988 79999999999 899998875 34556899999999999999998854322 479
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
++|+|+||+.+
T Consensus 73 r~i~V~~a~~~ 83 (91)
T 2lxi_A 73 QKVSMHYSDPK 83 (91)
T ss_dssp EEEEEECCCSC
T ss_pred EEEEEEEcCCC
Confidence 99999999865
No 51
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=5.2e-17 Score=134.07 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=70.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCc
Q 019429 45 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 124 (341)
Q Consensus 45 ~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (341)
.++|++|.|+..|..|++.++|... .++. ...++...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~---------~g~~-~~~~~~~~--------------------------------- 41 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQ---------MGRG-SMSYGRPP--------------------------------- 41 (135)
T ss_dssp ----------------------------------------CCSCCSC---------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCC---------CCCC-CCCcCCCC---------------------------------
Confidence 3689999999999999999998653 2221 11111100
Q ss_pred ccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCc
Q 019429 125 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH 199 (341)
Q Consensus 125 ~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~ 199 (341)
.....+++|+ |+||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||.
T Consensus 42 ------~~~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 42 ------PDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp ------SSGGGCCCEE--EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC-CEEECSCHHHHHHHHTTTTTC
T ss_pred ------CCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCC
Confidence 0011245566 9999999999999999999999999998643 2566 999999999999999999999
Q ss_pred eeCCCCcceEEEEeecCCC
Q 019429 200 CIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 200 ~i~~~~~~~l~v~~s~~~~ 218 (341)
.|.|+ .|+|+|++...
T Consensus 113 ~i~g~---~l~V~~a~~~~ 128 (135)
T 2lea_A 113 VLDGR---ELRVQMARYGR 128 (135)
T ss_dssp CSSSS---CCEEEECCCCC
T ss_pred EECCE---EEEEEECCCCC
Confidence 99999 99999998654
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.4e-16 Score=127.63 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=69.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
+..|+ |+||+..+|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 5 ~~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~-afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~ 78 (115)
T 4f25_A 5 SGNIF--IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVG 78 (115)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCEEE--ECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCce-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 34555 99999999999999999999999999987543 455 99999999999999999999999999 99999
Q ss_pred eecCCCCc
Q 019429 213 YSRHTDLS 220 (341)
Q Consensus 213 ~s~~~~~~ 220 (341)
+++.+..+
T Consensus 79 ~a~~~~~~ 86 (115)
T 4f25_A 79 RFKSRKER 86 (115)
T ss_dssp ESSCCCC-
T ss_pred ECCCcccc
Confidence 99766543
No 53
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=125.29 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=68.0
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
.+|+|+|||+++++ ++|+++|++||+|.+|.+.+. .+++|||+|.+.++|++|++.|||..| .|+.|+|
T Consensus 1 ~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGK-GELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVI---------CGSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSH-HHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCS---------SSCCCEE
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeE---------CCcEEEE
Confidence 36899999999877 799999999999999998876 456899999999999999999999984 6999999
Q ss_pred EeccCCc
Q 019429 86 TYSAHTD 92 (341)
Q Consensus 86 ~~s~~~~ 92 (341)
++++.+.
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 9998653
No 54
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=3.8e-17 Score=130.35 Aligned_cols=77 Identities=9% Similarity=-0.015 Sum_probs=68.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccC-cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG-~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
++.|+|+|||+++++ ++|+++|++|| +|..+.+..+.++++|||+|.+.|+|++||+.|||.+| .|+.|
T Consensus 28 ~~~l~VgnLp~~~te-~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---------~Gr~i 97 (111)
T 2jvr_A 28 RYRITMKNLPEGCSW-QDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF---------RGSVI 97 (111)
T ss_dssp CEEEEEECSSCCCCH-HHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE---------TTEEE
T ss_pred CCEEEEECCCCCCCH-HHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence 678999999999988 79999999999 99999886544556799999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++..
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998743
No 55
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=122.24 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc--CceeCCCCcceEEE
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHI 211 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~--g~~i~~~~~~~l~v 211 (341)
+++++|+ |+||++.+|+++|+++|++||.|++|.+.+. +|+ |||+|++.++|.+|++.|+ +..|.|+ +|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 85 (101)
T 2cq1_A 13 APSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQ-AFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI 85 (101)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCE-EEEEECCHHHHHHHHHHhccCCceECCc---EEEE
Confidence 4577877 9999999999999999999999999998876 465 9999999999999999874 6789999 9999
Q ss_pred EeecCCCCc
Q 019429 212 SYSRHTDLS 220 (341)
Q Consensus 212 ~~s~~~~~~ 220 (341)
+|++.+.++
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999887765
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=7.5e-17 Score=121.61 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=67.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|.|+|+|||+++++ ++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 6 ~~~~l~V~nl~~~~~~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 75 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDD-KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F 75 (85)
T ss_dssp CSSEEEEECCCTTCCH-HHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 5789999999999887 799999999999999987652 2355799999999999999999999985 6
Q ss_pred CceEEEEecc
Q 019429 80 PCTLRITYSA 89 (341)
Q Consensus 80 g~~i~v~~s~ 89 (341)
|++|+|++++
T Consensus 76 g~~l~v~~ak 85 (85)
T 3mdf_A 76 GRTIRVNLAK 85 (85)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=126.41 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.+++|+|+|||+++++ ++|+++|++||+|.+|.+.. +..+++|||+|.+.++|++|++.||+..| .|+.
T Consensus 21 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 90 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRT-KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---------DGYR 90 (109)
T ss_dssp CSSEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeE
Confidence 4689999999999877 79999999999999998876 33456799999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 91 l~V~~a~~~ 99 (109)
T 1x4a_A 91 LRVEFPRSG 99 (109)
T ss_dssp CEEECCCCC
T ss_pred EEEEEcccC
Confidence 999998855
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=124.28 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=70.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+|.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. .++++|||+|.+.++|++|++.|||..| .|+
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTE-VLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI---------LGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE---------TTE
T ss_pred CCCEEEEeCCCccCCH-HHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc---------CCC
Confidence 4689999999999987 799999999999999988872 2456899999999999999999999985 699
Q ss_pred eEEEEeccCCc
Q 019429 82 TLRITYSAHTD 92 (341)
Q Consensus 82 ~i~v~~s~~~~ 92 (341)
.|+|++++.+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999998653
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=1.3e-16 Score=123.42 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=70.2
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 2 ~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 71 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE-EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---------GS 71 (96)
T ss_dssp CSEEEEESCCTTCCH-HHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CcEEEEECCCCCCCH-HHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence 689999999999988 789999999999999988762 3356899999999999999999999985 69
Q ss_pred ceEEEEeccCCcc
Q 019429 81 CTLRITYSAHTDL 93 (341)
Q Consensus 81 ~~i~v~~s~~~~l 93 (341)
+.|+|++++.+..
T Consensus 72 ~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 72 RFLKCGYSSNSDI 84 (96)
T ss_dssp EECEEEECSCSSG
T ss_pred eEEEEEEcCCCCC
Confidence 9999999986643
No 60
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=118.59 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=67.2
Q ss_pred CCCcEEEEEeecCCCCCCHHH----HHHHHccc-CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 134 PESNVLLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~----L~~~F~~f-G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
+++.++ |||.||++.+++++ |+++|++| |+|.+|. .|+ |||+|.+.++|.+|++.|||..++|+ +
T Consensus 6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~-AfV~F~~~esA~~A~~~l~G~~l~gr---~ 75 (96)
T 2diu_A 6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCS-AILRFINQDSAERAQKRMENEDVFGN---R 75 (96)
T ss_dssp CCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTC-EEEEESSHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCE-EEEEECCHHHHHHHHHHhcCCccCCc---e
Confidence 345553 55999999999998 66899999 5999982 376 99999999999999999999999999 9
Q ss_pred EEEEeecCCCCcc
Q 019429 209 LHISYSRHTDLSI 221 (341)
Q Consensus 209 l~v~~s~~~~~~~ 221 (341)
|+|+||+.++..+
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999998876544
No 61
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=130.24 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=68.5
Q ss_pred ecccccccCCCCCCCCHHHH----HHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGER----AHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L----~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+++|||+|||+++++ ++| +++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|
T Consensus 28 p~~~LfV~nL~~~~~e-~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--------- 97 (127)
T 2a3j_A 28 PSQVVLITNINPEVPK-EKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF--------- 97 (127)
T ss_dssp CCSEEEEESCCTTSCH-HHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---------
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---------
Confidence 4789999999999988 454 57999999999998876 34556799999999999999999999985
Q ss_pred CCceEEEEeccCCc
Q 019429 79 GPCTLRITYSAHTD 92 (341)
Q Consensus 79 ~g~~i~v~~s~~~~ 92 (341)
.|++|+|+|++.+.
T Consensus 98 ~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 98 QGNPLVITFSETPQ 111 (127)
T ss_dssp TTSCCEEEECCCCC
T ss_pred CCCEEEEEEccCcc
Confidence 69999999998653
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=124.15 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=69.7
Q ss_pred eecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 3 YICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
..+|+|+|+|||+++++ ++|+++|++||+|.+|.+.+ ++++|||+|.+.++|++|++.|||..| .|++
T Consensus 13 ~~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~---------~g~~ 80 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITE-EEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPL---------RGKQ 80 (99)
T ss_dssp CCTTEEEEESCCTTCCH-HHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCB---------TTBC
T ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEe---------CCce
Confidence 46889999999999887 78999999999999998875 356899999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 81 l~v~~a~~~ 89 (99)
T 2cpj_A 81 LRVRFACHS 89 (99)
T ss_dssp CEEEESSCC
T ss_pred EEEEEcCCC
Confidence 999999865
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=122.68 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=67.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 15 ~~~~l~V~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 84 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTN-NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---------F 84 (94)
T ss_dssp CTTSEEEESCCTTSCH-HHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---------T
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---------C
Confidence 4689999999999988 789999999999999988762 3345799999999999999999999885 6
Q ss_pred CceEEEEecc
Q 019429 80 PCTLRITYSA 89 (341)
Q Consensus 80 g~~i~v~~s~ 89 (341)
|+.|+|+|++
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999975
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=123.64 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=69.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 7 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 76 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSE-EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---------Q 76 (99)
T ss_dssp SCEEEEEECCCTTCCH-HHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4689999999999888 789999999999999988762 3456899999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 77 g~~l~V~~a~~~ 88 (99)
T 1whw_A 77 GRMLHVLPSTIK 88 (99)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEEcCCC
Confidence 999999999865
No 65
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=121.09 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=63.9
Q ss_pred eccc-ccccCCCCCCCCHH---HHHHHhhcc-CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRP-LSRKYLQWQLSASG---ERAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~-~~~~NLp~~~t~e~---~L~~lF~~f-G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.|-+ |+|+|||++++.++ +|+++|++| |+|.+|. +++|||+|.+.|+|++|++.|||.+++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~-------- 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVF-------- 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSS--------
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccC--------
Confidence 5777 88999999999842 377999999 5999992 367999999999999999999999964
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
||+|+|+|++.+
T Consensus 73 -gr~i~v~~A~~~ 84 (96)
T 2diu_A 73 -GNRIIVSFTPKN 84 (96)
T ss_dssp -SSCCEEESSCCS
T ss_pred -CceEEEEecCCC
Confidence 999999999955
No 66
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=120.63 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=67.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|+|+|+|||+++++ ++|+++|++||+|.+|.+.+ ++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~~~~----g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 72 (90)
T 2dnq_A 7 GMVKLFIGNLPREATE-QEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYKL---------HGVNI 72 (90)
T ss_dssp CCEEEEEESCCSSCCH-HHHHHHHHTSSCEEEEEEET----TEEEEEESSHHHHHHHHHHHTTCBC---------SSCBC
T ss_pred CCeEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhcCCcc---------CCcEE
Confidence 4789999999999888 78999999999999998872 4799999999999999999999884 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 73 ~v~~a~~~ 80 (90)
T 2dnq_A 73 NVEASKNK 80 (90)
T ss_dssp EEECSSCC
T ss_pred EEEECCCC
Confidence 99998855
No 67
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=1.1e-15 Score=119.78 Aligned_cols=77 Identities=25% Similarity=0.486 Sum_probs=69.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
++++|+ |.||+..+|+++|+++|+.||.|++|++.+ ++ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 10 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLF--VRNLANTVTEEILEKAFSQFGKLERVKKLK---DY-AFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFA 80 (103)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CE-EEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEc
Confidence 356666 999999999999999999999999999873 55 99999999999999999999999998 9999999
Q ss_pred cCCCCc
Q 019429 215 RHTDLS 220 (341)
Q Consensus 215 ~~~~~~ 220 (341)
+.+...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876643
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=1.4e-16 Score=122.08 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+++|+|+|||+++++ ++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 7 ~~~~l~V~nlp~~~t~-~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTW-KMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL---------SGR 76 (92)
T ss_dssp SCCEEEECSCCTTCCH-HHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---------TTB
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCc
Confidence 4789999999999888 799999999999999988862 2346799999999999999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|++++..
T Consensus 77 ~l~v~~a~~~ 86 (92)
T 2dgv_A 77 EIDVRIDRNA 86 (92)
T ss_dssp CCCCEECSCC
T ss_pred EEEEEEcCCC
Confidence 9999998855
No 69
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=123.78 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=69.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 11 ~~~~l~v~nLp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 80 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNE-QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---------D 80 (102)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---------T
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4689999999999888 789999999999999998862 2455899999999999999999999984 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|++++.+
T Consensus 81 g~~l~v~~a~~~ 92 (102)
T 1x5s_A 81 GRQIRVDQAGKS 92 (102)
T ss_dssp SCCCEEEEEECC
T ss_pred CeEEEEEECCCC
Confidence 999999999865
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=122.42 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=68.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC--Cc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG--PC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~--g~ 81 (341)
.++.|+|+|||+++++ ++|+++|++||+|.+|.+.+. +++|||+|.+.++|++|++.|||..| . ++
T Consensus 16 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~---------~~~g~ 83 (97)
T 1why_A 16 PTTRLWVGGLGPNTSL-AALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPL---------GGPDR 83 (97)
T ss_dssp CCSCEEEECCCSSCCH-HHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBC---------SSSSC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEe---------CCCCc
Confidence 4689999999999887 799999999999999988764 45799999999999999999999985 5 89
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|+|++.+
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999999865
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=123.30 Aligned_cols=79 Identities=13% Similarity=0.239 Sum_probs=70.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..|.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRD-PDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE---------TTE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence 4689999999999888 789999999999999988863 2356899999999999999999999985 699
Q ss_pred eEEEEeccCCc
Q 019429 82 TLRITYSAHTD 92 (341)
Q Consensus 82 ~i~v~~s~~~~ 92 (341)
.|+|.+++.+.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cq3_A 84 KIEVNNATARV 94 (103)
T ss_dssp ECEEEECCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998663
No 72
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=122.93 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=69.3
Q ss_pred eecccccccCCCCCCCCHHHHH----HHhhccCcceEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCC
Q 019429 3 YICRPLSRKYLQWQLSASGERA----HVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 77 (341)
Q Consensus 3 ~~~r~~~~~NLp~~~t~e~~L~----~lF~~fG~V~~v~i~~~-~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 77 (341)
..+++|+|+|||+++++ ++|+ ++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..|
T Consensus 7 ~~~~~l~V~nL~~~~~~-~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~-------- 77 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSR-KELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI-------- 77 (96)
T ss_dssp SSCEEEEEESCCTTSCH-HHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE--------
T ss_pred CCCCEEEEECCCCCCCH-HHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE--------
Confidence 45678999999999988 6898 99999999999998852 2255799999999999999999999985
Q ss_pred CCCceEEEEeccCC
Q 019429 78 MGPCTLRITYSAHT 91 (341)
Q Consensus 78 ~~g~~i~v~~s~~~ 91 (341)
.|++|+|++++.+
T Consensus 78 -~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 78 -GSKKILVSLATGA 90 (96)
T ss_dssp -TTEEEEEEECCCS
T ss_pred -CCeEEEEEEcCCC
Confidence 6999999998754
No 73
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=123.83 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+.+.|+ |+||++.+|+++|+++|++||.|++|+|..+. +|+ |||+|++.++|.+|++.|||..|.|+ .|
T Consensus 5 p~~~lf--V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~A~~Ai~~lng~~~~gr---~i 78 (110)
T 3s8s_A 5 PLKEVT--FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGL-ARVLFTSTRGAKETVKNLHLTSVMGN---II 78 (110)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCcEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 466666 99999999999999999999999999987432 466 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|++++....
T Consensus 79 ~V~~a~~~~~ 88 (110)
T 3s8s_A 79 HAQLDIKGQQ 88 (110)
T ss_dssp EEEECSTTHH
T ss_pred EEEECCCCcH
Confidence 9999976543
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=125.01 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=70.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|.|+|+|||+++++ ++|+++|+.||+|.+|.+++ +..+++|||+|.+.++|++|++.|||..| .
T Consensus 11 ~~~~l~V~nLp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 80 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDD-KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F 80 (102)
T ss_dssp CCSCEEEESCCSSCCH-HHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 5799999999999887 79999999999999998876 23456899999999999999999999885 6
Q ss_pred CceEEEEeccCCc
Q 019429 80 PCTLRITYSAHTD 92 (341)
Q Consensus 80 g~~i~v~~s~~~~ 92 (341)
|+.|+|.+++.+.
T Consensus 81 g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 81 GRTIRVNLAKPMR 93 (102)
T ss_dssp TEEEEEEECCCCC
T ss_pred CcEEEEEeCCCCC
Confidence 9999999998653
No 75
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=1.7e-16 Score=126.97 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=69.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 24 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 93 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGD-QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---------G 93 (115)
T ss_dssp TTCCEEEESCCSSCCH-HHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------T
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4689999999999988 799999999999999988762 2345799999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|++++.+
T Consensus 94 g~~l~V~~a~~~ 105 (115)
T 2cpz_A 94 MKRLKVQLKRSK 105 (115)
T ss_dssp TEECEEECCCCS
T ss_pred CEEEEEEEcCCC
Confidence 999999999865
No 76
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=121.99 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=68.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++ ||+..| .
T Consensus 9 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~ 77 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGE-TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---------M 77 (99)
T ss_dssp SCCEEEEESCCSSCCH-HHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---------C
Confidence 4689999999999888 789999999999999988762 345689999999999999998 999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 78 g~~l~V~~a~~~ 89 (99)
T 2dgs_A 78 GKKVEVKRAEPR 89 (99)
T ss_dssp SCBCEEEECCCC
T ss_pred CeEEEEEECCCC
Confidence 999999999865
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=123.87 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=70.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDD-ERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV---------ATK 83 (103)
T ss_dssp SCCCEEEECCCTTCCH-HHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe---------CCc
Confidence 5789999999999888 789999999999999988863 3456899999999999999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|.+++.+
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2d9p_A 84 PLYVALAQRK 93 (103)
T ss_dssp BCEEEECSSC
T ss_pred EEEEEEeccc
Confidence 9999999865
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=122.40 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=69.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 76 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~-------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 76 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..|
T Consensus 4 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~------- 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTE-ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV------- 75 (98)
T ss_dssp CCCCEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-------
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-------
Confidence 4689999999999887 799999999999999988752 2346899999999999999999999985
Q ss_pred CCCCceEEEEeccCC
Q 019429 77 NMGPCTLRITYSAHT 91 (341)
Q Consensus 77 ~~~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 76 --~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 76 --DGHKLEVRISERA 88 (98)
T ss_dssp --TTEECEEECSSCS
T ss_pred --CCeEEEEEEccCC
Confidence 6999999998855
No 79
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=2.5e-16 Score=118.12 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. .++++|||+|.+.++|++|++.|||..| .|+.
T Consensus 3 ~l~V~nlp~~~t~-~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~ 72 (83)
T 3md1_A 3 NLFVGDLNVNVDD-ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---------NGRP 72 (83)
T ss_dssp EEEEECCCTTCCH-HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred EEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---------CCcE
Confidence 6899999999887 799999999999999988752 2356799999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 999999865
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=9e-17 Score=122.96 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=63.3
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccC--cceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG--~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|||+++++ ++|+++|+.|| +|.+|.+++. .++++|||+|.+.++|++|++.|||..| .
T Consensus 2 ~~l~V~nL~~~~t~-~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---------~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTD-EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------H 71 (90)
T ss_dssp --CEEESCCTTCCH-HHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---------S
T ss_pred eEEEEeCCCCCCCH-HHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---------C
Confidence 47999999999988 79999999999 9999988762 3456899999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++..
T Consensus 72 gr~i~V~~~~~~ 83 (90)
T 3p5t_L 72 GQNPVVTPSNKL 83 (90)
T ss_dssp SCCCEECCC---
T ss_pred CEEEEEEECCCC
Confidence 999999998754
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=122.63 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCc--eeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~--~i~~~~~~~l~v 211 (341)
++++|+ |+||++ .+|+++|+++|++||.|++|+|.+.+ |+ |||+|++.++|.+|++.||+. .|.|+ +|+|
T Consensus 14 p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 86 (102)
T 1x4d_A 14 TRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NE-AFIEMATTEDAQAAVDYYTTTPALVFGK---PVRV 86 (102)
T ss_dssp CCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SC-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHHcCCCceECCc---EEEE
Confidence 477777 999999 99999999999999999999988655 66 999999999999999999965 48998 9999
Q ss_pred EeecCC
Q 019429 212 SYSRHT 217 (341)
Q Consensus 212 ~~s~~~ 217 (341)
+||+..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999854
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=123.36 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEE-EEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v-~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+| .+++ +..+++|||+|.+.++|++|++.|||..|
T Consensus 4 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--------- 73 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDE-KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--------- 73 (96)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---------
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------
Confidence 4789999999999887 7999999999999999 7776 23456899999999999999999999985
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|++|+|++++.+
T Consensus 74 ~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 74 CNRPITVSYAFKK 86 (96)
T ss_dssp TTEECEEEESCCC
T ss_pred CCEEEEEEEeccc
Confidence 6999999999865
No 83
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=122.28 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=69.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 16 ~~~~l~v~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 85 (100)
T 2do4_A 16 EKHKLFISGLPFSCTK-EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---------KE 85 (100)
T ss_dssp CCSCEEEESCCTTCCH-HHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---------SS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 4688999999999988 789999999999999988863 2346799999999999999999999884 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.+++.+
T Consensus 86 ~~l~v~~a~~~ 96 (100)
T 2do4_A 86 NIIKVAISNSG 96 (100)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEEEECCCC
Confidence 99999999855
No 84
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=125.80 Aligned_cols=75 Identities=23% Similarity=0.221 Sum_probs=67.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
.+.|+|+|||+++++ ++|+++|++||.|.+|.+.+ .+++|||+|.+.++|++|++.|||..| .|+.|+
T Consensus 10 ~~~l~V~nLp~~~te-~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~ 77 (111)
T 1whx_A 10 KTVILAKNLPAGTLA-AEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKF---------HHVPLY 77 (111)
T ss_dssp EEEEEEESCCTTCCH-HHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBS---------SSSBCE
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEE---------CCeEEE
Confidence 468999999999877 79999999999999998775 445799999999999999999999985 699999
Q ss_pred EEeccCC
Q 019429 85 ITYSAHT 91 (341)
Q Consensus 85 v~~s~~~ 91 (341)
|+|++..
T Consensus 78 V~~a~~~ 84 (111)
T 1whx_A 78 LEWAPIG 84 (111)
T ss_dssp EEEEETT
T ss_pred EEECCCC
Confidence 9999854
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=125.95 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=69.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 28 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRD-PDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGR 97 (109)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE---------TTE
T ss_pred CCCEEEEECCCCcCCH-HHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence 4689999999999888 789999999999999988762 2456899999999999999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|++++.+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999865
No 86
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=121.94 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=67.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
.++|+|+|||+++++ ++|+++|+.||.|. +.++....+++|||+|.+.++|++|++.|||..| .|+.|+
T Consensus 19 ~~~l~V~nL~~~~t~-~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~ 87 (97)
T 2e5j_A 19 AADVYVGNLPRDARV-SDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---------GTDTLR 87 (97)
T ss_dssp CCEEEEECCCTTCCH-HHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS---------SSSCCE
T ss_pred CCEEEEeCCCCcCcH-HHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEE
Confidence 679999999999988 79999999999996 5555555566899999999999999999999985 699999
Q ss_pred EEeccCC
Q 019429 85 ITYSAHT 91 (341)
Q Consensus 85 v~~s~~~ 91 (341)
|++++.+
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998855
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=4.2e-16 Score=122.17 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=67.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|.|+|+|||+++++ ++|+++|+.||+|.+|.+++ ++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 10 ~~~~l~V~nl~~~~t~-~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTE-EILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDL---------EGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCH-HHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCcc---------CCCEE
Confidence 4689999999999887 79999999999999998874 3799999999999999999999985 69999
Q ss_pred EEEeccCCc
Q 019429 84 RITYSAHTD 92 (341)
Q Consensus 84 ~v~~s~~~~ 92 (341)
+|.+++.+.
T Consensus 76 ~v~~a~~~~ 84 (103)
T 2dgu_A 76 EIVFAKPPD 84 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999998653
No 88
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=123.38 Aligned_cols=78 Identities=15% Similarity=0.022 Sum_probs=69.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 83 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSE-PLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---------Y 83 (105)
T ss_dssp TTTEEEEECCCTTCCH-HHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---------C
Confidence 3688999999999888 789999999999999988762 2445799999999999999999999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 84 g~~l~v~~a~~~ 95 (105)
T 1x5u_A 84 GKPIRVNKASAH 95 (105)
T ss_dssp SCBCEEEETTTT
T ss_pred CeEEEEEECCCC
Confidence 999999999865
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=123.82 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=68.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC---
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP--- 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g--- 80 (341)
.++.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ++|||+|.+.++|++||+.|||..| .|
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~~ 80 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSW-QDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEG 80 (108)
T ss_dssp CCCEEEEESCCSSCCH-HHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEE---------ECTTS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCc---------cCCcC
Confidence 4788999999999988 799999999999999988864 5799999999999999999999986 46
Q ss_pred --ceEEEEeccCC
Q 019429 81 --CTLRITYSAHT 91 (341)
Q Consensus 81 --~~i~v~~s~~~ 91 (341)
+.|+|++++.+
T Consensus 81 ~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 81 ETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEEEEESSCC
T ss_pred cceEEEEEeCCCC
Confidence 99999999865
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=121.29 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=67.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.++.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~v~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 83 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------D 83 (95)
T ss_dssp GGGCEEEESCCSSCCH-HHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------T
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4689999999999887 789999999999999988762 3345799999999999999999999885 6
Q ss_pred CceEEEEecc
Q 019429 80 PCTLRITYSA 89 (341)
Q Consensus 80 g~~i~v~~s~ 89 (341)
|+.|+|++++
T Consensus 84 g~~l~v~~a~ 93 (95)
T 2cqc_A 84 GRRIRVSGPS 93 (95)
T ss_dssp TEEEEEECCS
T ss_pred CEEEEEEecC
Confidence 9999999986
No 91
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=121.94 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=67.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceE--------EEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHK--------ITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPR 71 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~--------v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~ 71 (341)
.++.|+|+|||+++++ ++|+++|+.||.|.+ |.+.+. ..+++|||+|.+.++|++|++.|||..|
T Consensus 12 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 12 DNNTIFVQGLGENVTI-ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCSEEEEECCCSSCCH-HHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 4788999999999888 799999999999999 877752 2345899999999999999999999984
Q ss_pred cCCCCCCCCceEEEEecc
Q 019429 72 YLLPENMGPCTLRITYSA 89 (341)
Q Consensus 72 ~~~~~~~~g~~i~v~~s~ 89 (341)
.|+.|+|++|+
T Consensus 89 -------~g~~l~V~~A~ 99 (99)
T 2la6_A 89 -------SGNPIKVSFAT 99 (99)
T ss_dssp -------SSSBCEEEECC
T ss_pred -------CCcEEEEEecC
Confidence 69999999875
No 92
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=121.58 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=66.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhc-CceeCCCCcce
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCK 208 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~-g~~i~~~~~~~ 208 (341)
|++|+ |+|||..+|+++|+++|+.|| .|++|+|..+ .+|+ |||+|.+.++|.+|++.|+ +..|.|+ .
T Consensus 1 S~~i~--v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~-aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~ 74 (91)
T 2lxi_A 1 SNIVM--LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGF-AFVEFSHLQDATRWMEANQHSLNILGQ---K 74 (91)
T ss_dssp CCEEE--EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSE-EEEECSSHHHHHHHHHTTTTEEEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHhcCCCeEECCE---E
Confidence 34566 999999999999999999999 8999988643 3576 9999999999999999874 5678998 9
Q ss_pred EEEEeecCCC
Q 019429 209 LHISYSRHTD 218 (341)
Q Consensus 209 l~v~~s~~~~ 218 (341)
|+|+||+++.
T Consensus 75 i~V~~a~~~~ 84 (91)
T 2lxi_A 75 VSMHYSDPKP 84 (91)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999997754
No 93
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.7e-16 Score=123.82 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=67.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
.++|+|+|||+++++ ++|+++|+.||+|.+|.+.+ ++++|||+|.+.++|++|++.|||..| .|+.|+
T Consensus 27 ~~~l~V~nlp~~~~~-~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~ 94 (101)
T 2la4_A 27 VTTAYIGNIPHFATE-ADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPF---------QGRNLR 94 (101)
T ss_dssp CCEEEEESCCTTCCH-HHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECC
T ss_pred CCEEEEcCCCcccCH-HHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEE
Confidence 578999999999888 79999999999999998874 456899999999999999999999985 699999
Q ss_pred EEeccC
Q 019429 85 ITYSAH 90 (341)
Q Consensus 85 v~~s~~ 90 (341)
|+|++.
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999875
No 94
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=118.86 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=68.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec-----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~-----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.... .+++|||+|.+.++|++|++.|||..|
T Consensus 3 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--------- 72 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTK-DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--------- 72 (88)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---------
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---------
Confidence 3578999999999988 7999999999999999877621 456899999999999999999999985
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|+++...
T Consensus 73 ~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 73 DGQEITATAVLAP 85 (88)
T ss_dssp TTEECEEEEECCC
T ss_pred CCeEEEEEECCCC
Confidence 6999999998744
No 95
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=123.83 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +..+++|||+|.+.++|++|++.|||..| .
T Consensus 12 ~~~~l~V~nLp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 81 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSP-DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---------D 81 (103)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---------T
T ss_pred CCeEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4689999999999888 78999999999999998876 23456799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++..
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2dnm_A 82 GRELRVQVARYG 93 (103)
T ss_dssp TBCCEEEECSSC
T ss_pred CcEEEEEECCcC
Confidence 999999999855
No 96
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=123.00 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 22 ~~~~l~V~nlp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 91 (106)
T 1p27_B 22 EGWILFVTGVHEEATE-EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------M 91 (106)
T ss_dssp TBEEEEEECCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---------C
Confidence 3578999999999888 789999999999999988762 2356899999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 92 g~~l~V~~a~~~ 103 (106)
T 1p27_B 92 GQPISVDWCFVR 103 (106)
T ss_dssp SSBCEEEESEES
T ss_pred CcEEEEEeecCC
Confidence 999999998754
No 97
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=124.24 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=68.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 25 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---------~ 94 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITE-DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---------A 94 (108)
T ss_dssp SCEEEEEECCCSSCCH-HHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 3688999999999877 789999999999999988763 2345799999999999999999999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 95 g~~l~V~~a~~k 106 (108)
T 2jrs_A 95 GRPMKVGHVTER 106 (108)
T ss_dssp SSCCEEECSCSS
T ss_pred CEEEEEEEcccC
Confidence 999999998865
No 98
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=3.3e-16 Score=125.13 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 83 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITT-EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------G 83 (115)
T ss_dssp TCEEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---------T
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4689999999999888 789999999999999988863 2345799999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 84 g~~l~V~~a~~~ 95 (115)
T 2dgo_A 84 GRQIRTNWATRK 95 (115)
T ss_dssp TEECEEEESSCC
T ss_pred CEEEEEEEccCC
Confidence 999999999865
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=118.83 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=66.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHh-cCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~g~~ 82 (341)
.+|+|+|+|||+++++ ++|+++|++||+|.+|.+.+ ++++|||+|.+.++|++|++.| ||..| .|++
T Consensus 11 ~~~~l~V~~l~~~~t~-~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~---------~g~~ 78 (85)
T 2ytc_A 11 TITTLYVGGLGDTITE-TDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIV---------NGRR 78 (85)
T ss_dssp SCCCEEEECCTTTSCH-HHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEE---------TTEE
T ss_pred CccEEEEcCCCCCCCH-HHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeE---------CCCE
Confidence 4789999999999887 79999999999999999886 3457999999999999999999 88874 6999
Q ss_pred EEEEecc
Q 019429 83 LRITYSA 89 (341)
Q Consensus 83 i~v~~s~ 89 (341)
|+|+|++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999975
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=4.7e-16 Score=122.10 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=68.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..|. ++
T Consensus 14 ~~~~l~v~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSE-EDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--------PG 84 (105)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC--------TT
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC--------CC
Confidence 3688999999999988 789999999999999988863 22468999999999999999999999863 22
Q ss_pred --ceEEEEeccCC
Q 019429 81 --CTLRITYSAHT 91 (341)
Q Consensus 81 --~~i~v~~s~~~ 91 (341)
++|+|.+++.+
T Consensus 85 ~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 85 ASSSLVVKFADTD 97 (105)
T ss_dssp CSSCCEEEESCSS
T ss_pred CCccEEEEECccC
Confidence 99999999865
No 101
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=6.2e-16 Score=131.76 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=70.1
Q ss_pred EEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCCcccccccCccCcCCCCCCCCCCCCccCccCCCcccCC
Q 019429 49 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD 128 (341)
Q Consensus 49 VeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (341)
.+|.+.++|..|+..|++.... -+|+.++...+...... .|.........+. ..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~-------~kgr~~~~~~~~~~~~~---------~~~~~~~s~~~~~----------~~ 64 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH-------RKGRGFGSDSNTREAIH---------SYERVRNEDDDEL----------EP 64 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccchhhcccccc-------ccCCCCCCCcccccccc---------CccccccCCCCCC----------CC
Confidence 7999999999999999997743 34666555543321100 0100000000000 00
Q ss_pred CCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 129 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 129 ~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
.......+++|+ |+||+..+|+++|+++|+.||.|..|.|.... +|+ |||+|.+.++|.+||+.|||..|.|
T Consensus 65 ~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 65 GPQRSVEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp -CCCCC-CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCEEE--EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 000112355666 99999999999999999999999999987642 465 9999999999999999999999999
Q ss_pred CCcceEEEEeecCCCC
Q 019429 204 GGFCKLHISYSRHTDL 219 (341)
Q Consensus 204 ~~~~~l~v~~s~~~~~ 219 (341)
+ .|+|.|++.+..
T Consensus 142 ~---~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 Q---TIQVDWCFVKGP 154 (165)
T ss_dssp E---ECEEEESEECC-
T ss_pred E---EEEEEEecCCCC
Confidence 8 999999976654
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=4.5e-16 Score=127.44 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=69.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|.|+|+|||+++++ ++|+++|+.||+|.+|.+++ +..+++|||+|.+.++|++||+.|||..| .
T Consensus 45 ~~~~l~V~nLp~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---------~ 114 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------D 114 (129)
T ss_dssp CSSCBCEETCTTSCCH-HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4688999999999888 78999999999999998875 23456899999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|+|++.+
T Consensus 115 g~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 GRRIRVDFSITK 126 (129)
T ss_dssp SSCCEESCCSSS
T ss_pred CEEEEEEEecCC
Confidence 999999998865
No 103
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=118.15 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeC--CCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~--~~~~~~l~v~ 212 (341)
++++|+ |.||+..+|+++|+++|++||.|++|.+... +|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+
T Consensus 16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V~ 88 (97)
T 1why_A 16 PTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSF-AYIQYESLDAAQAACAKMRGFPLGGPDR---RLRVD 88 (97)
T ss_dssp CCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCC-EEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCE-EEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEEE
Confidence 456666 8999999999999999999999999998876 466 999999999999999999999999 78 99999
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
|++.+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 104
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-16 Score=123.76 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=69.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhc------CCCcCCcC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALD------GRSIPRYL 73 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~ln------g~~i~~~~ 73 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|| |..|
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~---- 88 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEE-EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL---- 88 (111)
T ss_dssp CCCCEEEESCCTTCCH-HHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES----
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE----
Confidence 5789999999999888 789999999999999988852 345689999999999999999999 8774
Q ss_pred CCCCCCCceEEEEeccCC
Q 019429 74 LPENMGPCTLRITYSAHT 91 (341)
Q Consensus 74 ~~~~~~g~~i~v~~s~~~ 91 (341)
.|+.|+|.+++.+
T Consensus 89 -----~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 89 -----DGRQLKVDLAVTR 101 (111)
T ss_dssp -----SSCEEEEECCCCC
T ss_pred -----cCEEEEEEECCCC
Confidence 6999999998865
No 105
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=120.97 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=67.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 15 ~~~~l~v~nlp~~~~~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 84 (95)
T 2ywk_A 15 ADRTVFVGNLEARVRE-EILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---------YG 84 (95)
T ss_dssp GGGEEEEECCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 3588999999999887 789999999999999988863 2345799999999999999999999985 69
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+.|+|++++
T Consensus 85 ~~l~V~~a~ 93 (95)
T 2ywk_A 85 RPINVSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred CEEEEEEcC
Confidence 999999876
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=116.06 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+++.|+ |+||+..+|+++|+++|+.||.|++|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLF--IGNLPREATEQEIRSLFEQYGKVLECDII---KNY-GFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEAS 77 (90)
T ss_dssp CCEEEE--EESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECS
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHhcCCccCCc---EEEEEEC
Confidence 356666 99999999999999999999999999988 365 99999999999999999999999999 9999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 107
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=117.45 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=70.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.+++|+ |+||+..+|+++|+++|+.||.|++|+|... ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2cqi_A 14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVKV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCE-EEEEECCHHHHHHHHHHhCCCCcCCC---eEEE
Confidence 456666 9999999999999999999999999998764 3466 99999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 019429 212 SYSRHTDL 219 (341)
Q Consensus 212 ~~s~~~~~ 219 (341)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987654
No 108
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4e-16 Score=120.53 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=68.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEE-EEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKI-TTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v-~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
++.|+|+|||+++++ ++|+++|+.||+|.+| .++.....+.|||+|.+.++|++|++.|||..| .|++|
T Consensus 15 ~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l 84 (96)
T 2e44_A 15 IRKLQIRNIPPHLQW-EVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL---------ENFTL 84 (96)
T ss_dssp CCCEEEEEECSSSCH-HHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---------SSCBC
T ss_pred CCEEEEEcCCCCCCH-HHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEE
Confidence 688999999999988 7899999999999999 466643333499999999999999999999985 69999
Q ss_pred EEEeccCCc
Q 019429 84 RITYSAHTD 92 (341)
Q Consensus 84 ~v~~s~~~~ 92 (341)
+|++++.++
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998663
No 109
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=7.7e-16 Score=116.00 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=67.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |+||+..+|+++|+++|+.||.|.+|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 79 (85)
T 3mdf_A 6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 79 (85)
T ss_dssp CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 466666 9999999999999999999999999997543 2565 99999999999999999999999998 99
Q ss_pred EEEeec
Q 019429 210 HISYSR 215 (341)
Q Consensus 210 ~v~~s~ 215 (341)
+|+|||
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=4e-16 Score=122.75 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=69.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+++ +..+++|||+|.+.++|++|++.|||..+.. ..
T Consensus 12 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~------~~ 84 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDE-KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP------GM 84 (106)
T ss_dssp TCEEEEEESCCTTCCH-HHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT------TC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC------CC
Confidence 4689999999999888 78999999999999998876 2345689999999999999999999988520 26
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
+++|+|.+++.+
T Consensus 85 g~~l~v~~a~~~ 96 (106)
T 2dgp_A 85 NRPIQVKPADSE 96 (106)
T ss_dssp SSCCEEEECCCC
T ss_pred CceEEEEECCcc
Confidence 899999998855
No 111
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=117.68 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=70.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 80 (99)
T 1whw_A 7 GSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---ML 80 (99)
T ss_dssp SCEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 356666 99999999999999999999999999986532 566 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999977653
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=118.61 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=68.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCC-----CCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~-----~~~~~l~ 210 (341)
+..|+ |.||+..+|+++|+++|+.||+|+.|.|..+ |+ |||+|.+.++|.+||+.|||..|.+ + .|+
T Consensus 15 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i~ 86 (108)
T 1x4c_A 15 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YIR 86 (108)
T ss_dssp CCEEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CE-EEEEECCHHHHHHHHHHHCcCCccCCcCcce---EEE
Confidence 45555 9999999999999999999999999999876 65 9999999999999999999999999 7 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|++++.+.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998754
No 113
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=123.18 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 83 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRE-TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---------D 83 (103)
T ss_dssp SSEEEEEESCCTTCCH-HHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---------C
Confidence 3578999999999888 789999999999999988762 2345799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 84 g~~l~v~~a~~~ 95 (103)
T 2cq0_A 84 HLILNVEWAKPS 95 (103)
T ss_dssp TEECEEEESSCC
T ss_pred CcEEEEEECCCC
Confidence 999999999865
No 114
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=115.86 Aligned_cols=76 Identities=11% Similarity=0.267 Sum_probs=67.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 6 ~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 79 (87)
T 3bs9_A 6 HFHVF--VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QIR 79 (87)
T ss_dssp CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ceEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---EEE
Confidence 45555 99999999999999999999999999987642 455 99999999999999999999999999 999
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
|+|++.+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999764
No 115
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=121.75 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=69.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee-----cCCceEEEEeCCHHHHHHHHHHh-cCCCcCCcCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPEN 77 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~-----~~g~~aFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~ 77 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.| ||..|
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-------- 84 (107)
T 2cph_A 14 TTSKILVRNIPFQANQ-REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL-------- 84 (107)
T ss_dssp CCCCEEEESCCTTCCH-HHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--------
T ss_pred CCCEEEEeCCCCcCCH-HHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--------
Confidence 4689999999999888 789999999999999988753 23568999999999999999999 89885
Q ss_pred CCCceEEEEeccCC
Q 019429 78 MGPCTLRITYSAHT 91 (341)
Q Consensus 78 ~~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 85 -~g~~l~v~~a~~~ 97 (107)
T 2cph_A 85 -YGRRLVLEWADSE 97 (107)
T ss_dssp -SSCBCEEEECCCC
T ss_pred -CCCEEEEEeCCCC
Confidence 6999999999865
No 116
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=124.50 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=69.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 6 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g 75 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNE-KMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---------HG 75 (116)
T ss_dssp SCCEEEEECCTTTCCH-HHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---------SS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 3578999999999887 789999999999999988872 2446899999999999999999999985 69
Q ss_pred ceEEEEeccCCc
Q 019429 81 CTLRITYSAHTD 92 (341)
Q Consensus 81 ~~i~v~~s~~~~ 92 (341)
+.|+|++++.+.
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 999999998653
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=118.92 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=67.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+++|+|+|||+++++ ++|+++|++||+|.+|.+.+ .+|||+|.+.++|++|++.|||..| .|+.|
T Consensus 8 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 73 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTS-QELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEV---------KGKRI 73 (90)
T ss_dssp CSCCEEEESCCTTCCH-HHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEE
Confidence 4689999999999887 79999999999999999874 2799999999999999999999885 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999865
No 118
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=119.06 Aligned_cols=79 Identities=18% Similarity=0.375 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |+||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 11 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 84 (102)
T 2cqb_A 11 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 84 (102)
T ss_dssp CCSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 466677 9999999999999999999999999998654 3566 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 119
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=119.42 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=67.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.+ .+|||+|.+.++|++|++.|||..| .|+.|
T Consensus 9 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 74 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEF---------QGKRM 74 (92)
T ss_dssp SSEEEEEESCCSSCCH-HHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCee---------CCcEE
Confidence 4688999999999987 79999999999999999874 2799999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999855
No 120
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=115.94 Aligned_cols=76 Identities=21% Similarity=0.439 Sum_probs=68.4
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
+++++|+ |.||+..+|+++|+++|+.||.|++|++... .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 14 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 87 (94)
T 2e5h_A 14 PSKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV-AFILFLDKDSAQNCTRAINNKQLFGR---V 87 (94)
T ss_dssp CCTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTC-EEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 3466777 8999999999999999999999999998753 2466 99999999999999999999999999 9
Q ss_pred EEEEeec
Q 019429 209 LHISYSR 215 (341)
Q Consensus 209 l~v~~s~ 215 (341)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 121
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=1.2e-15 Score=117.91 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=70.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+||+..+|+++|+++|+.||.|.+|++...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 2 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 75 (96)
T 2x1f_A 2 SRVVY--LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY-AFIEFRDLESSASAVRNLNGYQLGSR---FLK 75 (96)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CcEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 45666 99999999999999999999999999987542 566 99999999999999999999999998 999
Q ss_pred EEeecCCCCc
Q 019429 211 ISYSRHTDLS 220 (341)
Q Consensus 211 v~~s~~~~~~ 220 (341)
|+|++.+...
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999887644
No 122
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=122.05 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=68.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|++.|||..| .|
T Consensus 8 ~~~l~V~nlp~~~~~-~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 77 (104)
T 1p1t_A 8 LRSVFVGNIPYEATE-EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---------SG 77 (104)
T ss_dssp HSCEEEESCCTTSCH-HHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---------SS
T ss_pred ccEEEEeCCCCcCCH-HHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence 589999999999988 789999999999999988763 2346799999999999999999999884 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|++++.+
T Consensus 78 ~~l~v~~a~~~ 88 (104)
T 1p1t_A 78 RALRVDNAASE 88 (104)
T ss_dssp SCBEEEETTCT
T ss_pred cEEEEEeCCCc
Confidence 99999999865
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=3.2e-16 Score=121.19 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=69.0
Q ss_pred ecccccccCCCCCCCCHHHHH----HHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~----~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.++.|+|+|||+++++ ++|+ ++|+.||+|.+|.+.+ +..+++|||+|.+.++|++|++.|||..|
T Consensus 7 ~~~~l~V~nLp~~~~~-~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--------- 76 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKK-DELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--------- 76 (97)
T ss_dssp CCSEEEEESCCTTSCH-HHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---------
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---------
Confidence 5789999999999988 6788 9999999999998875 23345799999999999999999999885
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|+|++.+
T Consensus 77 ~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 77 YDKPMRIQYAKTD 89 (97)
T ss_dssp TTEECEEEECSSC
T ss_pred CCcEEEEEEccCC
Confidence 6999999999865
No 124
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.7e-15 Score=115.99 Aligned_cols=79 Identities=16% Similarity=0.348 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.++.|+ |.||+..+|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 87 (103)
T 2cq3_A 14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 356666 99999999999999999999999999987543 566 99999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 019429 212 SYSRHTDL 219 (341)
Q Consensus 212 ~~s~~~~~ 219 (341)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987654
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=123.12 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC--ceeCCCCcceEE
Q 019429 134 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 210 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g--~~i~~~~~~~l~ 210 (341)
.++++|+ |+||+++ +|+++|+++|++||+|++|+|.+. +|+ |||+|++.++|.+|++.||+ ..|.|+ +|+
T Consensus 23 ~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~ 95 (112)
T 1x4f_A 23 ELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQ-AFIEMETREDAMAMVDHCLKKALWFQGR---CVK 95 (112)
T ss_dssp CCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHHHSCCCSSSS---CCE
T ss_pred CCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 3577777 9999998 999999999999999999999865 465 99999999999999998865 558998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+||+.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 126
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2.5e-16 Score=126.38 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=66.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|+|+|||+++++ ++|+++|++||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 39 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 108 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTD-TDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---------G 108 (118)
T ss_dssp CSEEEEEECSCTTCCH-HHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 3578999999999887 799999999999999988762 3456899999999999999999999985 6
Q ss_pred CceEEEEecc
Q 019429 80 PCTLRITYSA 89 (341)
Q Consensus 80 g~~i~v~~s~ 89 (341)
|+.|+|+|++
T Consensus 109 g~~l~V~~ak 118 (118)
T 2khc_A 109 TKRLKVQLKK 118 (118)
T ss_dssp TEECCEEEC-
T ss_pred CEEEEEEecC
Confidence 9999999875
No 127
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=115.71 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=69.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+++.|+ |.||+..+|+++|+++|+.||.|++|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (95)
T 2dnz_A 4 GSSGLY--VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY-GFITFSDSECARRALEQLNGFELAGR---PM 77 (95)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence 366666 99999999999999999999999999987642 466 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987654
No 128
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=122.86 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=68.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~---~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+.. .+++|||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~V~nlp~~~~~-~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 83 (114)
T 2do0_A 14 LGSTVFVANLDYKVGW-KKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---------FD 83 (114)
T ss_dssp CCSCEEEESCCTTCCH-HHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 3689999999999877 7999999999999999887632 245799999999999999999999985 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|++++..
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99999998744
No 129
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=117.30 Aligned_cols=79 Identities=14% Similarity=0.394 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 11 ~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 84 (102)
T 1x5s_A 11 DEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---QI 84 (102)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---CC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 466766 9999999999999999999999999998753 2566 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 85 ~v~~a~~~~~ 94 (102)
T 1x5s_A 85 RVDQAGKSSD 94 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=117.10 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=68.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
|+|+||+..+|+++|+++|+.||+|++|.+..+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+.
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~~ 76 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGF-AFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGMP 76 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSE-EEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCE-EEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCCC
Confidence 4599999999999999999999999999998765676 99999999999999999999999999 99999998765
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=116.63 Aligned_cols=77 Identities=17% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+++.|+ |+||+..+|+++|+++|++||.|++|++.+.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a 86 (99)
T 2cpj_A 14 QRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GF-GFIRLETRTLAEIAKVELDNMPLRGK---QLRVRFA 86 (99)
T ss_dssp CTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TE-EEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEEc
Confidence 466777 99999999999999999999999999998654 65 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7754
No 132
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=6.4e-16 Score=121.78 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=67.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.++.. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 28 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 97 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSD-ADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---------DG 97 (107)
T ss_dssp CSEEEEEESCCTTCCH-HHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 3678999999999988 789999999999999988762 3345799999999999999999999985 69
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+.|+|++++
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999975
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=7.4e-16 Score=127.25 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=69.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 41 ~~~~l~V~nLp~~~~~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 110 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE-VQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---------L 110 (139)
T ss_dssp TTSEEEEESCSTTCCH-HHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4689999999999988 789999999999999988763 2356899999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 111 g~~l~v~~a~~~ 122 (139)
T 1u6f_A 111 NKRLKVALAASG 122 (139)
T ss_dssp SCEEEEEESSCC
T ss_pred CeEEEEEECCCC
Confidence 999999999865
No 134
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=2.3e-16 Score=121.57 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|+|+|||+++++ ++|+++|++||.|.++.++. +..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~ 83 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSI-DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------G 83 (95)
T ss_dssp -CEEEEEECCCTTCCH-HHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---------C
Confidence 4689999999999988 78999999999998776654 22346799999999999999999999985 6
Q ss_pred CceEEEEecc
Q 019429 80 PCTLRITYSA 89 (341)
Q Consensus 80 g~~i~v~~s~ 89 (341)
|+.|+|++++
T Consensus 84 gr~l~v~~a~ 93 (95)
T 2ek1_A 84 SRKVKLSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CcEEEEEecc
Confidence 9999999875
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=117.74 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=62.1
Q ss_pred ccccccCCCCCCC-----CHHHHHHHhhccCcceEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 6 RPLSRKYLQWQLS-----ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 6 r~~~~~NLp~~~t-----~e~~L~~lF~~fG~V~~v~i~~--~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
|+|+|+|||++++ ++++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|++|++.|||..|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--------- 72 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--------- 72 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---------
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---------
Confidence 6899999999985 4589999999999999998875 23456899999999999999999999985
Q ss_pred CCc-eEEEE
Q 019429 79 GPC-TLRIT 86 (341)
Q Consensus 79 ~g~-~i~v~ 86 (341)
.|+ +|+|+
T Consensus 73 ~g~~~l~V~ 81 (81)
T 2krb_A 73 DKQHTFRVN 81 (81)
T ss_dssp SSSSCCCCC
T ss_pred CCceeEEeC
Confidence 577 77763
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=116.00 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred CcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 136 SNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+.|+ |+||+..+|+++|+ ++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 9 ~~~l~--V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~l 82 (96)
T 2dgx_A 9 GADVQ--VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLK-AVVQMENLQDAIGAVNSLHRYKIGSK---KI 82 (96)
T ss_dssp CEEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCC-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 44455 99999999999999 999999999999997543 576 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|++++...
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 137
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7e-16 Score=122.18 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=68.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. +++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 24 ~~~~l~V~nl~~~~t~-~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 91 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTD-QLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTI---------EGHVV 91 (109)
T ss_dssp SCCEEEEECCSSCCCH-HHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEE---------CCcEE
Confidence 3679999999999888 799999999999999998874 45899999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|.|++.+
T Consensus 92 ~v~~a~~~ 99 (109)
T 1x4g_A 92 KCYWGKES 99 (109)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99999865
No 138
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=7e-16 Score=122.24 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=68.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 25 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 94 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQE-DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------M 94 (110)
T ss_dssp TBEEEEEESCCTTCCH-HHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 3578999999999888 789999999999999988752 3356899999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 95 g~~l~V~~a~~~ 106 (110)
T 1oo0_B 95 GQTIQVDWCFVK 106 (110)
T ss_dssp TEECEEEESEES
T ss_pred CcEEEEEEcccC
Confidence 999999998854
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7e-16 Score=121.35 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=66.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|+|||+|||+++++ ++|+++|+.||+|.+|.+.+ +.++++|||+|.+.++|.+|++ +||..| .|
T Consensus 10 ~~~~lfV~~Lp~~~te-~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---------~g 78 (103)
T 1s79_A 10 KNRSVYIKGFPTDATL-DDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---------KE 78 (103)
T ss_dssp GGGCEEEECCCTTCCH-HHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC---------TT
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE---------CC
Confidence 3589999999999887 78999999999999998886 3345689999999999999999 999884 79
Q ss_pred ceEEEEeccC
Q 019429 81 CTLRITYSAH 90 (341)
Q Consensus 81 ~~i~v~~s~~ 90 (341)
+.|+|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998763
No 140
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=7.2e-16 Score=117.20 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|+ .|||..| .
T Consensus 5 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---------~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA-EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---------R 73 (89)
T ss_dssp HHTEEEEESCCTTCCH-HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---------T
T ss_pred cCCEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---------C
Confidence 3589999999999987 789999999999999988762 34568999999999999999 9999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 74 g~~l~V~~a~~~ 85 (89)
T 3ucg_A 74 GRQIKVIPKRTN 85 (89)
T ss_dssp TEECEEEETTTT
T ss_pred CcEEEEEEccCC
Confidence 999999998754
No 141
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=122.20 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=68.0
Q ss_pred cccccccCCCCCCC-----CHHHHHHHhhccCcceEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCC
Q 019429 5 CRPLSRKYLQWQLS-----ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 77 (341)
Q Consensus 5 ~r~~~~~NLp~~~t-----~e~~L~~lF~~fG~V~~v~i~~--~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 77 (341)
.+.|+|+|||++++ ++++|+++|+.||+|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-------- 86 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-------- 86 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--------
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--------
Confidence 57899999999885 4589999999999999998875 23456899999999999999999999985
Q ss_pred CCCc-eEEEEeccCC
Q 019429 78 MGPC-TLRITYSAHT 91 (341)
Q Consensus 78 ~~g~-~i~v~~s~~~ 91 (341)
.|+ +|+|+++...
T Consensus 87 -~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 -DKQHTFRVNLFTDF 100 (105)
T ss_dssp -STTCEEEEECSCCC
T ss_pred -CCCceEEEEEcchH
Confidence 688 9999998743
No 142
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=8.8e-16 Score=121.74 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=67.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..+.|+|+|||+++++ ++|+++|++||+|.+|.+. +++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 30 ~~~~l~V~nLp~~~t~-~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l 95 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQE-SELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSF---------ANQPL 95 (108)
T ss_dssp SCSEEEECSSCTTCCH-HHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence 4689999999999987 7899999999999999887 35799999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|+|++.+
T Consensus 96 ~V~~a~~~ 103 (108)
T 2jvo_A 96 EVVYSKLP 103 (108)
T ss_dssp EEESCSCC
T ss_pred EEEEecCC
Confidence 99998854
No 143
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=6.8e-15 Score=117.41 Aligned_cols=79 Identities=10% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++.|+ |+||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (115)
T 2dgo_A 14 NHFHVF--VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QI 87 (115)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 355555 99999999999999999999999999987643 355 99999999999999999999999998 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|.|++.+..
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=123.17 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=68.8
Q ss_pred cccccccCCCCCCCCHHHHH---HHhhccCcceEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 5 CRPLSRKYLQWQLSASGERA---HVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~---~lF~~fG~V~~v~i~~~-------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
-+.|+|+|||+++++ ++|+ ++|++||+|.+|.+.+. ..+++|||+|.+.|+|++||+.|||..|
T Consensus 15 ~~~l~V~nLp~~~~~-~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~----- 88 (111)
T 2cpi_A 15 KNLVFVVGLSQRLAD-PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV----- 88 (111)
T ss_dssp SSCEEEEEECTTTCC-HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-----
T ss_pred CCEEEEECCCCCCCH-HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-----
Confidence 468999999999999 6898 99999999999988862 2236899999999999999999999985
Q ss_pred CCCCCCceEEEEeccCCc
Q 019429 75 PENMGPCTLRITYSAHTD 92 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~~~ 92 (341)
.|++|+|++++.+.
T Consensus 89 ----~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 ----DGRTLKASLGTTKY 102 (111)
T ss_dssp ----TTEEEEEESCCCCS
T ss_pred ----CCEEEEEEeccccc
Confidence 69999999998663
No 145
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-15 Score=117.43 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
.+++|+ |.||+..+|+++|+++|+.||.|++|.|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 21 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 94 (109)
T 1x4a_A 21 NDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVE 94 (109)
T ss_dssp CSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 456666 99999999999999999999999999986542 566 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
|++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 987644
No 146
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.4e-15 Score=112.75 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=66.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|+|||..+|+++|+++|+.||.|.+|.+.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a~ 79 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAA 79 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccce-EEEEECCHHHHHHHHHHhcCCeeCCc---EEEEEecC
Confidence 5599999999999999999999999999987542 455 99999999999999999999999998 99999997
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
+++
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=1.3e-15 Score=118.34 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred ecccccccCCCC-CCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQW-QLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~-~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
..++|+|+|||+ ++++ ++|+++|+.||+|.+|.+. +++|||+|.+.++|++|++.|||..+ .|+.
T Consensus 21 ~~~~l~V~nLp~~~~t~-~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~ 86 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSK-EDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMN---------FGKK 86 (97)
T ss_dssp TTCEEEEESCCSSCCCH-HHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEE---------TTEE
T ss_pred CCCEEEEeCCCcccCCH-HHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCEE
Confidence 368899999999 7777 7999999999999999884 35799999999999999999999885 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 148
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-16 Score=120.16 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=65.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCc-ceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC-CCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDG-RSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~-V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng-~~i~~~~~~~~~~g~ 81 (341)
.+++|+|+|||+++++ ++|+++|++||+ |..+.+. ++++|||+|.+.++|++|++.||| ..| .|+
T Consensus 7 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~---------~g~ 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTA-DDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVEL---------HGK 73 (93)
T ss_dssp CCCCEEEECCCTTCCH-HHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEE---------TTE
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeE---------CCE
Confidence 4789999999999988 799999999999 5555553 235799999999999999999999 774 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|++++.+
T Consensus 74 ~l~v~~a~~~ 83 (93)
T 2cqh_A 74 IMEVDYSVSK 83 (93)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999865
No 149
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-15 Score=115.14 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=69.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++.|+ |+||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++ |||..|.++ .|
T Consensus 9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~l 81 (99)
T 2dgs_A 9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF-GFITFEDEQSVDQAVN-MHFHDIMGK---KV 81 (99)
T ss_dssp SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSE-EEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCce-EEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence 356666 9999999999999999999999999998754 3576 9999999999999998 999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999976653
No 150
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=3.5e-16 Score=122.18 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=67.5
Q ss_pred cccccccCCCC------CCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 5 CRPLSRKYLQW------QLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 5 ~r~~~~~NLp~------~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
-+.|+|+|||+ ++++ ++|+++|++||+|.+|.+++ +.++++|||+|.+.++|++|++.|||..|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~-~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~----- 79 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLK-KALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL----- 79 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHH-HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS-----
T ss_pred CcEEEEeCCCcCChHHHHHHH-HHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc-----
Confidence 47899999999 7777 79999999999999998875 22456799999999999999999999995
Q ss_pred CCCCCC-ceEEEEeccCC
Q 019429 75 PENMGP-CTLRITYSAHT 91 (341)
Q Consensus 75 ~~~~~g-~~i~v~~s~~~ 91 (341)
.| +.|+|.+++.+
T Consensus 80 ----~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 ----DLKHRLFLYTMKDV 93 (100)
T ss_dssp ----SSSCBCEEEESHHH
T ss_pred ----CCCeEEEEEECchh
Confidence 57 99999998754
No 151
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=122.92 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
++++|+ |+||+..+++++|+ ++|++||.|++|.+.. +.+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 28 p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~-aFV~F~~~~~A~~Ai~~lng~~l~gr---~ 101 (127)
T 2a3j_A 28 PSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGK-AYIVFATQESAQAFVEAFQGYPFQGN---P 101 (127)
T ss_dssp CCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCC-EEEEESSHHHHHHHHHHSTTCCCTTS---C
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCE-EEEEECCHHHHHHHHHHHCCCEeCCC---E
Confidence 466766 99999999999876 7999999999998864 34687 99999999999999999999999999 9
Q ss_pred EEEEeecCCCCcc
Q 019429 209 LHISYSRHTDLSI 221 (341)
Q Consensus 209 l~v~~s~~~~~~~ 221 (341)
|+|+||+.+...+
T Consensus 102 l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 102 LVITFSETPQSQV 114 (127)
T ss_dssp CEEEECCCCCHHH
T ss_pred EEEEEccCcchhc
Confidence 9999998776543
No 152
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.1e-16 Score=120.59 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=67.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcce-EEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVH-KITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~-~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
..|+|+|+|||+++++ ++|+++|++||+|. +|.+++. ..+++|||+|.+.++|++|++.|||..|
T Consensus 8 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--------- 77 (99)
T 2div_A 8 MAASLWMGDLEPYMDE-NFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--------- 77 (99)
T ss_dssp SSSEEEECSCCTTCCH-HHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---------
T ss_pred CccEEEEeCCCCCCCH-HHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---------
Confidence 4689999999999887 79999999999999 9988762 2346899999999999999999999885
Q ss_pred CCce----EEEEeccCC
Q 019429 79 GPCT----LRITYSAHT 91 (341)
Q Consensus 79 ~g~~----i~v~~s~~~ 91 (341)
.|+. |+|+|++..
T Consensus 78 ~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 78 PGATPAKRFKLNYATYS 94 (99)
T ss_dssp SSCSSCEECCEEETTCC
T ss_pred CCCCcceeEEEeecCCC
Confidence 5777 999998854
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=117.56 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChhHHHHHHHHh-cCceeCCCCcc
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFC 207 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~Ai~~l-~g~~i~~~~~~ 207 (341)
.+++|+ |+||+..+|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|++.| ||..|.++
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCce-EEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 456666 9999999999999999999999999998765 2566 999999999999999999 99999999
Q ss_pred eEEEEeecCCCC
Q 019429 208 KLHISYSRHTDL 219 (341)
Q Consensus 208 ~l~v~~s~~~~~ 219 (341)
.|+|+|++.+..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999977653
No 154
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=6.8e-15 Score=118.07 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=70.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
++.|+ |+||+..+|+++|+++|+.||.|++|.|..+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 7 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~V 80 (116)
T 2fy1_A 7 PGKLF--IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGF-AFITFENPADAKNAAKDMNGKSLHGK---AIKV 80 (116)
T ss_dssp CCEEE--EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCE-EEEECSSHHHHHHHHHHCSSCBCSSS---BCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 55666 99999999999999999999999999987643 466 99999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 019429 212 SYSRHTDL 219 (341)
Q Consensus 212 ~~s~~~~~ 219 (341)
+|++....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987653
No 155
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=115.90 Aligned_cols=78 Identities=22% Similarity=0.396 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+++|+ |.||+..+|+++|+++|+.||.|++|++.... +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 16 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 89 (100)
T 2do4_A 16 EKHKLF--ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGL-AYVEYENESQASQAVMKMDGMTIKEN---IIK 89 (100)
T ss_dssp CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 355666 99999999999999999999999999987644 355 99999999999999999999999999 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99997654
No 156
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=117.56 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=64.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC--eeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCc----eeCCC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH----CIYDG 204 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~--v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~----~i~~~ 204 (341)
-.+|+ |+||++.+|+|+|+++|++||. |.+|++.++ ++|+ |||+|.+.++|.+|++.|||. .|.|+
T Consensus 9 m~tlf--V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTII--LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEE--EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34556 9999999999999999999995 668887643 3677 999999999999999999997 48898
Q ss_pred CcceEEEEeecC
Q 019429 205 GFCKLHISYSRH 216 (341)
Q Consensus 205 ~~~~l~v~~s~~ 216 (341)
.|+|+||+.
T Consensus 86 ---~i~V~~Aks 94 (95)
T 2lkz_A 86 ---TIGVDFAKS 94 (95)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEEccC
Confidence 999999874
No 157
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=117.10 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=69.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
+++.|+ |+||+..+|+++|+++|+.||.|++|.+..+. +|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~-- 78 (98)
T 2cpf_A 4 GSSGLF--IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH-- 78 (98)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccE-EEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence 356666 99999999999999999999999999987422 355 99999999999999999999999998
Q ss_pred ceEEEEeecCCC
Q 019429 207 CKLHISYSRHTD 218 (341)
Q Consensus 207 ~~l~v~~s~~~~ 218 (341)
.|+|+|++.+.
T Consensus 79 -~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 -KLEVRISERAT 89 (98)
T ss_dssp -ECEEECSSCSS
T ss_pred -EEEEEEccCCC
Confidence 99999987654
No 158
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=4.7e-15 Score=116.33 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=70.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCC---CCcc
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYD---GGFC 207 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~---~~~~ 207 (341)
+++.|+ |+||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.+ +
T Consensus 14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~gg~~~--- 87 (105)
T 2dnh_A 14 RDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGC-AFVKFSSHTEAQAAIHALHGSQTMPGASS--- 87 (105)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEE-EEEEESSHHHHHHHHHHHSSCCCCTTCSS---
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcE-EEEEeCCHHHHHHHHHHHcCCccCCCCCc---
Confidence 466666 99999999999999999999999999987653 355 9999999999999999999999998 7
Q ss_pred eEEEEeecCCCC
Q 019429 208 KLHISYSRHTDL 219 (341)
Q Consensus 208 ~l~v~~s~~~~~ 219 (341)
.|+|.|++.+..
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999987654
No 159
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.1e-15 Score=118.23 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=66.3
Q ss_pred ecccccccCCCC-CCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQW-QLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~-~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.+++|+|+|||+ ++++ ++|+++|+.||+|.+|.+. +++|||+|.+.++|++|++.|||..+ .|+.
T Consensus 9 ~~~~l~V~nlp~~~~t~-~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 74 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSK-EDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMN---------FGKK 74 (96)
T ss_dssp CCEEEEEESSTTSCCCH-HHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSC---------BTTT
T ss_pred CCCEEEEeCCCcccCCH-HHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCee---------CCcE
Confidence 468999999999 7766 7999999999999999885 35799999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 75 l~V~~a~~~ 83 (96)
T 2kvi_A 75 LILEVSSSN 83 (96)
T ss_dssp BCEEEEECC
T ss_pred EEEEEcCcC
Confidence 999999854
No 160
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.1e-15 Score=115.38 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+++.|+ |.||+..+|+++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v 80 (92)
T 2dgv_A 7 GACQIF--VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERACRMMNGMKLSGR---EIDV 80 (92)
T ss_dssp SCCEEE--ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEE-EEEEESSHHHHHHHHHHHTTCCBTTB---CCCC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 456666 99999999999999999999999999987632 455 99999999999999999999999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
+|++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9987654
No 161
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=118.58 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=66.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhcc--CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAF--GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~f--G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+|+|+|+|||+++++ ++|+++|+.| |+|.+|.+.+ ++|||+|.+.++|++|++.|||..| .|+
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~---------~g~ 79 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSE-EMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVL---------DGS 79 (99)
T ss_dssp CCCEEEEESCCTTCCH-HHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEE---------TTE
T ss_pred CcCEEEEeCCCCCCCH-HHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEe---------CCc
Confidence 5789999999999887 7999999999 9999987653 4799999999999999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
+|+|++++.+
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpd_A 80 PIEVTLAKPV 89 (99)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999999865
No 162
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=118.99 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
.++.|+ |+||+..+|+++|+++|+.||+|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 28 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V 101 (109)
T 2err_A 28 QPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 101 (109)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTE-EEEECCCSHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 356666 99999999999999999999999999987542 566 99999999999999999999999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
+|++.+.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998754
No 163
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.3e-16 Score=122.40 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=68.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcc----eEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFV----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V----~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|||+|||+++++ ++|+++|+.||.| ..+.+..+..+++|||+|.+.++|++|++.|||..| .
T Consensus 24 ~~~~l~V~nLp~~~t~-~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~ 93 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTE-RDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---------Y 93 (115)
T ss_dssp CCSEEEEECCCTTCCH-HHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------C
Confidence 4689999999999888 7899999999999 566555555566899999999999999999999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|+|++.+
T Consensus 94 g~~l~v~~a~~~ 105 (115)
T 2cpx_A 94 GKILVIEFGKNK 105 (115)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999999865
No 164
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=115.97 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=70.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE-EEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v-~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
+++.|+ |+||+..+|+++|+++|+.||.|.+| +|... .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 77 (96)
T 1x5t_A 4 GSSGIF--IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---P 77 (96)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 356666 99999999999999999999999999 88654 2566 99999999999999999999999998 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|+|++.+..
T Consensus 78 l~v~~a~~~~~ 88 (96)
T 1x5t_A 78 ITVSYAFKKDS 88 (96)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEEecccCC
Confidence 99999977653
No 165
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-16 Score=121.09 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=66.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.++.|+|+|||+++++ ++|+++|+.||.|.+++++. +..+++|||+|.+.++|++|++.|||..| .
T Consensus 14 ~~~~l~v~nLp~~~t~-~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~ 83 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSI-DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------G 83 (98)
T ss_dssp SSEEEEEESCCTTCCH-HHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---------C
Confidence 3578999999999988 78999999999998765554 12346799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++..
T Consensus 84 g~~l~V~~a~~~ 95 (98)
T 2cqp_A 84 SRKVKLVLGSGP 95 (98)
T ss_dssp TEECEEEESSCS
T ss_pred CeEEEEEEcCCC
Confidence 999999998743
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.6e-15 Score=132.59 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=72.7
Q ss_pred CCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 135 ESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 135 ~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
++++|+ |+||+ ..+|+++|+++|+.||.|++|+++..++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|
T Consensus 3 ~~~~l~--V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLM--VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGA-AMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCV 76 (205)
T ss_dssp CCSEEE--EECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTC-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---eEEEEE
Confidence 367777 99999 899999999999999999999998877787 99999999999999999999999999 999999
Q ss_pred ecCCCC
Q 019429 214 SRHTDL 219 (341)
Q Consensus 214 s~~~~~ 219 (341)
|+.+..
T Consensus 77 s~~~~~ 82 (205)
T 3tyt_A 77 SKQPAI 82 (205)
T ss_dssp CSCSCC
T ss_pred ccCCcc
Confidence 986653
No 167
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.4e-16 Score=122.35 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=68.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcce--------EEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVH--------KITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPR 71 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~--------~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~ 71 (341)
..|+|+|+|||+++++ ++|+++|+.||.|. +|.++.. ..+++|||+|.+.++|++|++.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTL-DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF-- 90 (113)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEcCCCCCCCH-HHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc--
Confidence 4689999999999988 78999999999998 5877652 3456899999999999999999999985
Q ss_pred cCCCCCCCCceEEEEeccCC
Q 019429 72 YLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 72 ~~~~~~~~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 91 -------~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 -------QGSKLKVSLARKK 103 (113)
T ss_dssp -------TTEECEEECSSCC
T ss_pred -------CCCEEEEEECCCC
Confidence 6999999998865
No 168
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=122.73 Aligned_cols=79 Identities=19% Similarity=0.165 Sum_probs=69.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 34 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 103 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSD-ADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DG 103 (124)
T ss_dssp SCEEEEEESCCSSCCH-HHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---------SS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 4678999999999888 789999999999999988763 2456899999999999999999999884 69
Q ss_pred ceEEEEeccCCc
Q 019429 81 CTLRITYSAHTD 92 (341)
Q Consensus 81 ~~i~v~~s~~~~ 92 (341)
+.|+|++|....
T Consensus 104 ~~l~V~~a~~~~ 115 (124)
T 2kt5_A 104 RPMDIQLVASQI 115 (124)
T ss_dssp CEEEEEEECCTT
T ss_pred cEEEEEEeCCCC
Confidence 999999998653
No 169
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=130.85 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=68.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccC--cceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG--~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.|.|||+|||+++++ ++|+++|+.|| +|.+|.++. +.+++||||+|.+.++|++||+.|||..|
T Consensus 55 ~~~lfVgnLp~~~te-~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--------- 124 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTD-QQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--------- 124 (156)
T ss_dssp -CEEEEECCCTTCCH-HHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---------
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------
Confidence 478999999999988 79999999999 999998875 23456899999999999999999999985
Q ss_pred CCceEEEEeccCCc
Q 019429 79 GPCTLRITYSAHTD 92 (341)
Q Consensus 79 ~g~~i~v~~s~~~~ 92 (341)
.|+.|+|++++.+.
T Consensus 125 ~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 125 NGEKVDVRPATRQN 138 (156)
T ss_dssp TTEECEEEECCHHH
T ss_pred CCeEeEEEEcCCCc
Confidence 69999999998653
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=112.76 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHh-cCceeCCCCcceEEEEe
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHISY 213 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l-~g~~i~~~~~~~l~v~~ 213 (341)
.+++|+ |+||+..+|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|.+|++.| ||..+.|+ .|+|+|
T Consensus 11 ~~~~l~--V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~-afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~~ 83 (85)
T 2ytc_A 11 TITTLY--VGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QC-AFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVKW 83 (85)
T ss_dssp SCCCEE--EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHTTTTTCEETTE---ECCEEE
T ss_pred CccEEE--EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CE-EEEEECCHHHHHHHHHHhcCCeeECCC---EEEEEe
Confidence 356666 99999999999999999999999999998754 65 999999999999999999 99999998 999999
Q ss_pred ec
Q 019429 214 SR 215 (341)
Q Consensus 214 s~ 215 (341)
+|
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 171
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.7e-15 Score=126.83 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=69.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+++|||+|||+++++ ++|+++|+.||+|.+|.+.+.+ +++|||+|.+.++|.+|++.|||..| .|++|
T Consensus 72 ~~~~l~V~nl~~~~t~-~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 140 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNK-TELERAFGYYGPLRSVWVARNP-PGFAFVEFEDPRDAADAVRELDGRTL---------CGCRV 140 (150)
T ss_dssp TSCEEEEESCCSCCSC-HHHHHHHHHHSCEEEEEECSSS-CSEEEEEESSHHHHHHHHHHHSSSCS---------SSSCC
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCEEEEEEeeCC-CcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence 4689999999999988 7899999999999999988764 45799999999999999999999884 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998854
No 172
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=113.15 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=68.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 4 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (88)
T 4a8x_A 4 PTKVH--IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQ---EI 77 (88)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcE-EEEEEecHHHHHHHHHHcCCCeECCe---EE
Confidence 45556 9999999999999999999999999997532 3566 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+++++..
T Consensus 78 ~v~~a~~~~ 86 (88)
T 4a8x_A 78 TATAVLAPW 86 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999986643
No 173
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=115.14 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=68.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.||.|.+|.+.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (95)
T 2cqc_A 14 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI 87 (95)
T ss_dssp GGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 456666 89999999999999999999999999987532 355 99999999999999999999999999 99
Q ss_pred EEEeecC
Q 019429 210 HISYSRH 216 (341)
Q Consensus 210 ~v~~s~~ 216 (341)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 174
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=3.8e-15 Score=118.04 Aligned_cols=75 Identities=21% Similarity=0.511 Sum_probs=68.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.+++|+ |+||+..+|+++|+++|+.||.|++|.+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 30 ~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a 100 (108)
T 2jvo_A 30 SNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKIL---NGF-AFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVYS 100 (108)
T ss_dssp SCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEESC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEe
Confidence 466666 99999999999999999999999999988 466 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7754
No 175
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=5.4e-15 Score=114.80 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.0
Q ss_pred CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 134 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
++++.|+ |+||+. .+|+++|+++|+.||.|.+|++. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+
T Consensus 20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIEXESQEMNFGK---KLILE 90 (97)
T ss_dssp CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHTTSEETTE---ECEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 3467777 999998 99999999999999999999884 476 99999999999999999999999998 99999
Q ss_pred eecCC
Q 019429 213 YSRHT 217 (341)
Q Consensus 213 ~s~~~ 217 (341)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98754
No 176
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=120.08 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=68.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhc-cCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCC-cCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSA-FGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRS-IPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~-fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~-i~~~~~~~~~ 78 (341)
.+++|+|+|||+++++ ++|+++|+. ||+|.+|.+++. .++++|||+|.+.++|++|++.|||.. |
T Consensus 8 ~~~~l~V~nLp~~~t~-~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 77 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDD-GMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL--------- 77 (104)
T ss_dssp CCCCEEEECCCTTCCH-HHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---------
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---------
Confidence 4688999999999887 799999999 999999988762 234579999999999999999999988 5
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 78 ~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 78 GSKPVRLSVAIPK 90 (104)
T ss_dssp SSSCCCCCBCCCC
T ss_pred CCEeEEEEEccCC
Confidence 5999999998755
No 177
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=8.9e-16 Score=119.78 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=66.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec-----CCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~-----~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
..|+|+|+|||+++++ ++|+++|+.|| |.+|.+.+.. .+++|||+|.+.++|++|+ .|||..|
T Consensus 18 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--------- 85 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTE-ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--------- 85 (100)
T ss_dssp --CEEEESCCSSCCSS-SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---------
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---------
Confidence 4689999999999998 78999999999 9999887632 3557999999999999999 8999985
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 86 ~g~~l~V~~a~~~ 98 (100)
T 2j76_E 86 GNRRIRVDVADQA 98 (100)
T ss_dssp TTBCCCCEECCCS
T ss_pred CCeEEEEEeccCC
Confidence 6999999998855
No 178
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=118.61 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=65.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|+|||+|||+++++ ++|+++|+.||+|.+|.+.+...+ +|||+|.+.++|++|++ |||..| .|+.|
T Consensus 7 ~~~~l~V~nl~~~~t~-~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~---------~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDS-AQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSL---------GGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCH-HHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEE---------TTEEC
T ss_pred CCCEEEEECCCCCCCH-HHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEE---------CCEEE
Confidence 3789999999999988 799999999999999843333333 89999999999999999 999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|.++..+
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 99987754
No 179
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6e-16 Score=123.60 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=67.2
Q ss_pred ecccccc--cCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCc-CCcCCCCCCCC
Q 019429 4 ICRPLSR--KYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI-PRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~--~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i-~~~~~~~~~~g 80 (341)
..+.|+| .||++++++ ++|+++|++||+|.+|++.. +++||||+|.+.++|++|++.|||++| . .+ ..+
T Consensus 24 pt~~L~V~Ng~L~~~~te-~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~--~l---g~g 95 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSR-NQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD--DL---GQK 95 (114)
T ss_dssp CCSEEEEETCTGGGTCCH-HHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEEC--TT---SCE
T ss_pred CCCEEEEECCCCCCCCCH-HHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEcc--cc---CCC
Confidence 3578999 559999988 79999999999999998765 345799999999999999999999975 1 01 258
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
++|+|.|++..
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 89999998744
No 180
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.4e-15 Score=115.20 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++.|+ |+||+..+|+++|+++|+.||.|++|.|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (105)
T 1x5u_A 14 QDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---PI 87 (105)
T ss_dssp TTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 466666 99999999999999999999999999986532 466 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999977654
No 181
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=113.18 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.+++|+ |+||+..+|+++|+++|+.||.|++|.+.+ + +|||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 9 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLH--VGNISPTCTNQELRAKFEEYGPVIECDIVK---D-YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLS 79 (92)
T ss_dssp SSEEEE--EESCCSSCCHHHHHHHHHTTSCCCEEEECS---S-EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEc
Confidence 355666 999999999999999999999999999874 3 499999999999999999999999998 9999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 182
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=115.35 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=68.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.++.|+ |.||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 15 ~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 88 (95)
T 2ywk_A 15 ADRTVF--VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSF-GFVCFKHPESVSYAIALLNGIRLYGR---PIN 88 (95)
T ss_dssp GGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSTHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCC---EEE
Confidence 356666 99999999999999999999999999987643 355 99999999999999999999999999 999
Q ss_pred EEeecC
Q 019429 211 ISYSRH 216 (341)
Q Consensus 211 v~~s~~ 216 (341)
|+|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 183
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=2.1e-15 Score=120.18 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=66.6
Q ss_pred EEEeecCCCCCCHHHHHHHHcccC-CeeEEEEE-cCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCC
Q 019429 140 LASIENMQYAVTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 217 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~-~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~ 217 (341)
.|+|+||++.+|+++|+++|+.|| +|..+.+. .+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|++++..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGf-aFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~a~~~ 105 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERLNNIEFRGS---VITVERDDNP 105 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCC-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEESCC-
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECCCC
Confidence 355999999999999999999999 99999986 345787 99999999999999999999999999 9999998643
No 184
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=115.97 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+++.|+ |.||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2d9p_A 14 QVVNLY--VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEATKAVTEMNGRIVATK---PLYV 87 (103)
T ss_dssp SCCCEE--EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 355666 9999999999999999999999999998754 2455 99999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 019429 212 SYSRHTDL 219 (341)
Q Consensus 212 ~~s~~~~~ 219 (341)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987653
No 185
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=116.74 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=70.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |+||+..+|+++|+++|+.||.|++|.|...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (103)
T 2cq0_A 14 DNATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---IL 87 (103)
T ss_dssp SSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHcCCCeeCCc---EE
Confidence 356666 99999999999999999999999999987542 355 99999999999999999999999998 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999877653
No 186
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.3e-15 Score=117.33 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=67.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
+++|+ |+||+..+|+++|+++|+.||.|.+|++... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 27 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAY--IGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGC-CFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWGK 99 (101)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBCC
T ss_pred CCEEE--EcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEecc
Confidence 56666 9999999999999999999999999999854 465 99999999999999999999999998 99999987
Q ss_pred C
Q 019429 216 H 216 (341)
Q Consensus 216 ~ 216 (341)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=122.55 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=68.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++.||+ . +.
T Consensus 16 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~---------~~ 84 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTD-ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I---------ID 84 (116)
T ss_dssp SSSEEEEECCCSSCCH-HHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E---------ET
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c---------CC
Confidence 4789999999999888 789999999999999988862 3456899999999999999999998 5 46
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998754
No 188
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=1.4e-15 Score=123.41 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=68.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.++.. ..+++|||+|.+.++|++|++.|||..| .
T Consensus 21 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 90 (126)
T 3ex7_B 21 EGWILFVTGVHEEATE-EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------M 90 (126)
T ss_dssp SSEEEEEESCCTTCCH-HHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------C
Confidence 3578999999999887 799999999999999988752 2355799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|+|++.+
T Consensus 91 g~~l~v~~a~~~ 102 (126)
T 3ex7_B 91 GQPISVDWCFVR 102 (126)
T ss_dssp SSBCEEEESEES
T ss_pred CeEEEEEEecCC
Confidence 999999999855
No 189
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.2e-15 Score=118.17 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+++|+ |.||+..+|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 24 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 97 (115)
T 2cpz_A 24 EGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---RL 97 (115)
T ss_dssp TTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCcc-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 456666 99999999999999999999999999987543 355 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999976653
No 190
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=1e-15 Score=149.98 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=69.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.++|| |+||+..||+++|.++|+.||.|+.|.|+.. ..|| |||+|.+.++|.+||+.|||..|.|+ .|+
T Consensus 102 ~~~lf--V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~i~gr---~i~ 175 (437)
T 3pgw_S 102 FKTLF--VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGY-AFIEYEHERDMHSAYKHADGKKIDGR---RVL 175 (437)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccce-EEEeeccHHHHHHHHHHcCCCEECCE---EEE
Confidence 45666 9999999999999999999999999998643 2566 99999999999999999999999999 999
Q ss_pred EEeecCCCC
Q 019429 211 ISYSRHTDL 219 (341)
Q Consensus 211 v~~s~~~~~ 219 (341)
|.|++....
T Consensus 176 V~~a~~~~~ 184 (437)
T 3pgw_S 176 VDVERGRTV 184 (437)
T ss_pred EEEeCCCCC
Confidence 999986543
No 191
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=112.67 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=63.6
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
++|+|+|||+++++ ++|+++|++||+|.+|.+.+. .++++|||+|.+.++|++|++.++ .. +.|+
T Consensus 1 ~~l~v~nlp~~~t~-~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~---------~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ-EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE---------LDSK 69 (77)
T ss_dssp CCEEEESCCSSCCS-HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC---------CSSC
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc---------cCCE
Confidence 57999999999999 789999999999999988762 335689999999999999999999 66 4799
Q ss_pred eEEEEec
Q 019429 82 TLRITYS 88 (341)
Q Consensus 82 ~i~v~~s 88 (341)
.|+|+++
T Consensus 70 ~l~v~~a 76 (77)
T 1uaw_A 70 TIDPKVA 76 (77)
T ss_dssp CCEEEEC
T ss_pred EEEEEec
Confidence 9999876
No 192
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=1.3e-15 Score=115.87 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=67.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|+|+|+|||+++++ ++|+++|++| +|.+|.+. + ++++|||+|.+.++|++|++.|||..+ .|++|
T Consensus 4 ~~~~l~V~nLp~~~t~-~~l~~~F~~~-~v~~~~i~-~-~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC-QEVHDLLKDY-DLKYCYVD-R-NKRTAFVTLLNGEQAQNAIQMFHQYSF---------RGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCH-HHHHHHTCSS-CCCCEEEE-G-GGTEEEECCSCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHhhC-CeEEEEEe-C-CCcEEEEEECCHHHHHHHHHHhCCCeE---------CCcEE
Confidence 3689999999999988 7999999999 99999875 3 445799999999999999999999985 69999
Q ss_pred EEEeccCCc
Q 019429 84 RITYSAHTD 92 (341)
Q Consensus 84 ~v~~s~~~~ 92 (341)
+|+++..+.
T Consensus 71 ~V~~a~~~~ 79 (88)
T 1wg1_A 71 IVQLQPTDA 79 (88)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999987653
No 193
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=115.80 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |+||+..+|+++|+++|+.||.|++|.|... .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 85 (103)
T 2dnm_A 12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGF-AFVRFHDRRDAQDAEAAMDGAELDGR---EL 85 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSC-EEEEESSSSHHHHHHHHHSSCCBTTB---CC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 356666 9999999999999999999999999998753 2576 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999997654
No 194
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=119.49 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCcee-----CCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI-----YDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i-----~~~~~~~l 209 (341)
+++.|+|..+||+..+|+++|+++|++||.|++|+|... +|| |||+|++.++|.+|++.|||.+| .++ +|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~---~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKI---TL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSC-EEEEESSHHHHHHHHHHTTTCEEECTTSCEE---EC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCEEccccCCCc---EE
Confidence 467777222779999999999999999999999988764 577 99999999999999999999988 344 99
Q ss_pred EEEeecCC
Q 019429 210 HISYSRHT 217 (341)
Q Consensus 210 ~v~~s~~~ 217 (341)
.|.|++.-
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99998643
No 195
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.5e-15 Score=114.80 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 135 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 135 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
+++.|+ |+||+. .+|+++|+++|+.||.|.+|.+. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+|
T Consensus 9 ~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIECESQEMNFGK---KLILEV 79 (96)
T ss_dssp CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTE-EEEEESCHHHHHHHHHHHTCSSCBTT---TBCEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCeeCCc---EEEEEE
Confidence 466666 999998 99999999999999999999985 465 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
++.+.
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97654
No 196
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-16 Score=126.44 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=67.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceE--EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCC----CcCCcC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHK--ITTFE----KTAGFQALVQFSDTETASSAKNALDGR----SIPRYL 73 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~--v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~----~i~~~~ 73 (341)
.+++|||+|||+++++ ++|+++|++||+|.. |++++ +.+++||||+|.+. +|.+|++.|||. .
T Consensus 22 ~~~~lfV~nL~~~~te-~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~----- 94 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTM-DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT----- 94 (131)
T ss_dssp CCCEEEECSCCTTCCS-HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-----
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-----
Confidence 4789999999999998 799999999999966 87775 23456799999999 999999999998 6
Q ss_pred CCCCCCCceEEEEeccCC
Q 019429 74 LPENMGPCTLRITYSAHT 91 (341)
Q Consensus 74 ~~~~~~g~~i~v~~s~~~ 91 (341)
+.|+.|+|++++.+
T Consensus 95 ----~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 ----IDGKTINVEFAKGS 108 (131)
T ss_dssp ----GGGCCCCCEECCCS
T ss_pred ----CCCEEEEEEECCCC
Confidence 46999999999855
No 197
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.1e-15 Score=112.53 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=62.5
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. .++++|||+|.+.++|++|++ |||..| .|+.
T Consensus 1 ~l~v~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---------~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTV-EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---------NNKM 69 (75)
T ss_dssp CEEEECCCSSCCH-HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---------SSCC
T ss_pred CEEEecCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---------CCEE
Confidence 4899999999988 789999999999999987762 245689999999999999998 999884 6999
Q ss_pred EEEEec
Q 019429 83 LRITYS 88 (341)
Q Consensus 83 i~v~~s 88 (341)
|+|++|
T Consensus 70 l~v~~A 75 (75)
T 2mss_A 70 VECKKA 75 (75)
T ss_dssp CEEECC
T ss_pred EEEEeC
Confidence 999875
No 198
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=3.5e-16 Score=119.34 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=65.2
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +.++++|||+|.+.+ |.+|++.|||..| .|+
T Consensus 2 ~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---------~g~ 70 (90)
T 2ki2_A 2 RNIYVGNLVYSATS-EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---------MGR 70 (90)
T ss_dssp EEEEEEEECTTSSH-HHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---------SSS
T ss_pred cEEEECCCCCCCCH-HHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---------CCe
Confidence 78999999999988 78999999999999998876 234568999999999 9999999999985 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|++|...
T Consensus 71 ~l~V~~a~~~ 80 (90)
T 2ki2_A 71 TIRVTEANPK 80 (90)
T ss_dssp SCSEEEC---
T ss_pred EEEEEEcCCC
Confidence 9999998855
No 199
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=118.82 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=69.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
+++|+ |+||+..+|+++|+++|++||.|++|.|.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 10 ~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 82 (111)
T 1whx_A 10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGIT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP 82 (111)
T ss_dssp EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCE-EEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECC
Confidence 45555 999999999999999999999999998876 4466 99999999999999999999999999 99999998
Q ss_pred CCCC
Q 019429 216 HTDL 219 (341)
Q Consensus 216 ~~~~ 219 (341)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7544
No 200
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.8e-15 Score=116.07 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=69.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
.+.|+ |+||+..+|+++|+++|+.||.|.+|+|... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 25 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~ 97 (109)
T 1x4g_A 25 NCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGY-SFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWGK 97 (109)
T ss_dssp CCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEECCC
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHcCCCEECCc---EEEEEecC
Confidence 55666 8999999999999999999999999999876 465 99999999999999999999999998 99999997
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
.+.
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 201
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-16 Score=117.44 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=65.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+... ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 5 ~~~l~v~nlp~~~t~-~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 74 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTD-QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---------QA 74 (85)
T ss_dssp CCEEEEESCCTTCCH-HHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---------CE
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---------ee
Confidence 578999999999988 789999999999999988762 3356899999999999999999999984 68
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+.|+++++.
T Consensus 75 ~~~~~~~~~ 83 (85)
T 1x4e_A 75 QMAKQSGPS 83 (85)
T ss_dssp ESCCSSCCC
T ss_pred EEEeecCCC
Confidence 888877643
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=121.94 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=67.6
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|||+|||+++++ ++|+++|+.||+|.+|.++. +..+++|||+|.+.++|++|+ .|||..| .|
T Consensus 25 ~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g 93 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP-RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---------LG 93 (114)
T ss_dssp HTEEEEESCCTTCCH-HHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---------TT
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---------CC
Confidence 578999999999988 78999999999999998885 234557999999999999999 9999885 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.+++.+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99999998854
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=119.63 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=68.8
Q ss_pred CcEEEEEeecCCCCCCHHHHH---HHHcccCCeeEEEEEcCC--------CCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 136 SNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~---~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
.+.|+ |+||+..+|+++|+ ++|++||+|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 15 ~~~l~--V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 15 KNLVF--VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS-AYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp SSCEE--EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE-EEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE-EEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45555 99999999999999 999999999999987543 256 99999999999999999999999999
Q ss_pred CcceEEEEeecCCC
Q 019429 205 GFCKLHISYSRHTD 218 (341)
Q Consensus 205 ~~~~l~v~~s~~~~ 218 (341)
.|+|+|++.+.
T Consensus 92 ---~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 ---TLKASLGTTKY 102 (111)
T ss_dssp ---EEEEESCCCCS
T ss_pred ---EEEEEeccccc
Confidence 99999987654
No 204
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=1.7e-15 Score=120.13 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=65.4
Q ss_pred cccccccCCCCC-CCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 5 CRPLSRKYLQWQ-LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 5 ~r~~~~~NLp~~-~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++|+|+|||++ +++ ++|+++|++||+|.+|.+ .+++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 27 ~~~l~V~nl~~~~~t~-~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 92 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKK-SDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVL---------AGQTL 92 (110)
T ss_dssp SSEEEECSCCCSSCCH-HHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CcEEEEeCCCcccCCH-HHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence 478999999999 665 899999999999999988 235799999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99998744
No 205
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=2.5e-15 Score=126.59 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=69.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.|++. ..+++|||+|.+.++|++||+.|||..| .
T Consensus 38 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 107 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTE-EQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---------D 107 (156)
T ss_dssp TCCEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4688999999999887 789999999999999988762 2345899999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
+++|+|++++..
T Consensus 108 g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 108 DRIIRTDWDAGF 119 (156)
T ss_dssp TEECEEEEESCC
T ss_pred CeEEEEEECCCC
Confidence 999999999854
No 206
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=118.45 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=67.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~-----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+++|+|+|||+++++ ++|+++|+.|| |.+|.+++. ..+++|||+|.+.++|++|+ .|||..|
T Consensus 14 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--------- 81 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTE-ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--------- 81 (104)
T ss_dssp SCEEEEEESCCSSCCH-HHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---------
T ss_pred CCCEEEEeCCCCcCCH-HHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---------
Confidence 4689999999999888 79999999999 999988752 23557999999999999999 9999985
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++.+
T Consensus 82 ~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 82 GNKRIRVDVADQA 94 (104)
T ss_dssp TTEECEEEECCCC
T ss_pred CCcEEEEEEccCC
Confidence 6999999999865
No 207
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=120.08 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++. |+..| .
T Consensus 15 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---------~ 83 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQ-ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---------D 83 (105)
T ss_dssp SSSEECCBSCCTTCCH-HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---------C
Confidence 4688999999999888 799999999999999988773 2345899999999999999998 99874 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 84 g~~l~V~~a~~~ 95 (105)
T 2dh8_A 84 GRNIDPKPCTPR 95 (105)
T ss_dssp TEEEBCCCSCCS
T ss_pred CEEEEEEEccCC
Confidence 999999998865
No 208
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=3.3e-15 Score=119.69 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce-
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT- 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~- 82 (341)
.+..|+|.|||+++++ ++|+++|+.||+|.+|.+++. ++|||+|.+.++|++||+.|||.+| .|+.
T Consensus 15 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSW-QDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCT-THHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBC---------CCTTS
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEe
Confidence 3678999999999998 789999999999999988764 5799999999999999999999985 5777
Q ss_pred ----EEEEeccC
Q 019429 83 ----LRITYSAH 90 (341)
Q Consensus 83 ----i~v~~s~~ 90 (341)
|+|..+..
T Consensus 82 ~~~~i~v~~~~~ 93 (115)
T 3beg_B 82 ETAYIRVKVDGP 93 (115)
T ss_dssp CCCBCEEEECC-
T ss_pred eeEEEEeccCCC
Confidence 56655543
No 209
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.9e-15 Score=118.81 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 134 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
..+++|+ |+||+..+|+++|+++|++||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 38 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 111 (118)
T 2khc_A 38 PEGCNLF--IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF-GFVSFDNPDSAQVAIKAMNGFQVGTK---R 111 (118)
T ss_dssp CCSEEEE--EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCE-EEEEEESSHHHHHHHHHCCCCEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3456666 99999999999999999999999999987532 566 99999999999999999999999999 9
Q ss_pred EEEEeec
Q 019429 209 LHISYSR 215 (341)
Q Consensus 209 l~v~~s~ 215 (341)
|+|+|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999975
No 210
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=111.30 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=67.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.+++|+ |+||+..+|+++|+++|+.||.|.+|++.+ ++ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 8 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIF--VGNVSAACTSQELRSLFERRGRVIECDVVK---DY-AFVHMEKEADAKAAIAQLNGKEVKGK---RINVELS 78 (90)
T ss_dssp CSCCEE--EESCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---CE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 355666 999999999999999999999999999874 45 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 211
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=4.6e-15 Score=114.60 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
++++|+ |+||+..+|+++|+ ++|+.||.|.+|.+.. +.+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 7 ~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 80 (97)
T 1nu4_A 7 PNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK---P 80 (97)
T ss_dssp CCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcE-EEEEeCCHHHHHHHHHHhCCCEECCc---E
Confidence 467777 99999999999999 9999999999999874 23576 99999999999999999999999998 9
Q ss_pred EEEEeecCCCCc
Q 019429 209 LHISYSRHTDLS 220 (341)
Q Consensus 209 l~v~~s~~~~~~ 220 (341)
|+|+|++.+...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999876543
No 212
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=1.4e-15 Score=116.19 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=63.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
|+|+||+..+|+++|+++|+.|| .|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|++
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V~~ 79 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP 79 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEE-EEECC-CHHHHHHHHHHGGGSCSSSC---CCEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcE-EEEEECCHHHHHHHHHHcCCCeeCCE---EEEEEE
Confidence 55999999999999999999999 99999987542 455 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
+++..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 213
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=114.93 Aligned_cols=78 Identities=12% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCee-EEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~-~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
+++.|+ |+||+..+|+++|+++|+.||.|. +|++..++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (99)
T 2div_A 8 MAASLW--MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGY-CFVEFADLATAEKCLHKINGKPLPGA---T 81 (99)
T ss_dssp SSSEEE--ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEE-EEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCE-EEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence 466777 999999999999999999999999 99987543 355 99999999999999999999999998 7
Q ss_pred ----EEEEeecCCC
Q 019429 209 ----LHISYSRHTD 218 (341)
Q Consensus 209 ----l~v~~s~~~~ 218 (341)
|+|+|++...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999987654
No 214
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.2e-15 Score=115.48 Aligned_cols=77 Identities=18% Similarity=0.355 Sum_probs=68.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+||+..+|+++|+++|+.||.|.+|.+...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 23 ~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 96 (106)
T 1p27_B 23 GWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PIS 96 (106)
T ss_dssp BEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESCHHHHHHHHHHHTTCBSSSS---BCE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeE-EEEEECCHHHHHHHHHHhcCCEECCc---EEE
Confidence 55566 99999999999999999999999999987542 465 99999999999999999999999999 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++.+.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99987643
No 215
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=2.1e-15 Score=118.13 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=66.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|+|+|||+++++ ++|+++|+.|| |.+|.+++. ..+++|||+|.+.++|++|+ .|||..| .
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~ 81 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQ-GDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---------G 81 (103)
T ss_dssp SCEEEEEESCCTTCCH-HHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---------T
T ss_pred CCeEEEEeCCCCCCCH-HHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---------C
Confidence 3688999999999988 78999999997 999988862 23458999999999999999 8999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2dng_A 82 DRSLRVDIAEGR 93 (103)
T ss_dssp TEECEEEECCCC
T ss_pred CeEEEEEEecCC
Confidence 999999998855
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-15 Score=119.36 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=67.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCc-ceEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhc--CCCcCCcCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLP 75 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~-V~~v~i~~-----~~~g~~aFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~ 75 (341)
.+++|||+|||+++++ ++|+++|+.||+ |.+|.+++ +..+++|||+|.+.++|++|++.|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~-~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~------- 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKR-EEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ------- 78 (109)
T ss_dssp CSEEEEEECCCTTSCH-HHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC-------
T ss_pred CCCEEEEeCCCCcCCH-HHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce-------
Confidence 4678999999999888 789999999999 99998872 2355689999999999999999996 466
Q ss_pred CCCCCceEEEEeccCC
Q 019429 76 ENMGPCTLRITYSAHT 91 (341)
Q Consensus 76 ~~~~g~~i~v~~s~~~ 91 (341)
+.|+.|+|+|++.+
T Consensus 79 --~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 --LWGHQIAVDWAEPE 92 (109)
T ss_dssp --BTTBCCEEEESCSS
T ss_pred --ecCCeEEEEEcCCC
Confidence 46999999999865
No 217
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=113.62 Aligned_cols=75 Identities=17% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCcee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 201 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i 201 (341)
+.++|+ |+||+..+|+++|+++|+.||.|.+ |++..++ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 12 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCSEEE--EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEE-EEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEe
Confidence 356666 9999999999999999999999999 8887542 455 99999999999999999999999
Q ss_pred CCCCcceEEEEeec
Q 019429 202 YDGGFCKLHISYSR 215 (341)
Q Consensus 202 ~~~~~~~l~v~~s~ 215 (341)
.|+ .|+|+||+
T Consensus 89 ~g~---~l~V~~A~ 99 (99)
T 2la6_A 89 SGN---PIKVSFAT 99 (99)
T ss_dssp SSS---BCEEEECC
T ss_pred CCc---EEEEEecC
Confidence 999 99999974
No 218
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=115.05 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=69.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++.|+ |+||+..+|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 25 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~i~g~---~l 98 (108)
T 2jrs_A 25 GPMRLY--VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY-GFITFSDSECAKKALEQLNGFELAGR---PM 98 (108)
T ss_dssp SCEEEE--EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 356666 99999999999999999999999999987542 355 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999997653
No 219
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=1.2e-15 Score=125.87 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=69.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +..+++|||+|.+.++|++|++.|||..| .
T Consensus 46 ~~~~l~V~nLp~~~te-~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---------~ 115 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------D 115 (135)
T ss_dssp GCCCEEEECCCSSCHH-HHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4689999999999877 79999999999999998875 23455799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|++++.+
T Consensus 116 g~~l~V~~a~~~ 127 (135)
T 2lea_A 116 GRELRVQMARYG 127 (135)
T ss_dssp SSCCEEEECCCC
T ss_pred CEEEEEEECCCC
Confidence 999999999855
No 220
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=119.25 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=65.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|.|+|+|||+++++ ++|+++|++||+|.-+....+..+++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 83 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATE-ETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---------EGRAI 83 (101)
T ss_dssp CCSEEEEESCCTTCCH-HHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---------TTEEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---------CCeEE
Confidence 4789999999999887 7999999999988321111133456899999999999999999999885 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 84 ~v~~a~~~ 91 (101)
T 2fc9_A 84 RLELQGPR 91 (101)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99999865
No 221
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=113.96 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=69.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++++|+ |.||+..+|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 14 ~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 87 (114)
T 2do0_A 14 LGSTVF--VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGI-GTVTFEQSIEAVQAISMFNGQLLFDR---PMH 87 (114)
T ss_dssp CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEeCCC---EEE
Confidence 456667 99999999999999999999999999987643 345 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987644
No 222
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=6.7e-15 Score=116.52 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=69.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+||+..+|+++|+++|+.||.|++|.+.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 26 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 99 (110)
T 1oo0_B 26 GWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---TIQ 99 (110)
T ss_dssp BEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCc---EEE
Confidence 55666 99999999999999999999999999986542 566 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++.+.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99997654
No 223
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=114.34 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhc------CceeCC
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIYD 203 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~------g~~i~~ 203 (341)
++++|+ |+||+..+|+++|+++|+.||.|.+|+|..+ .+|+ |||+|.+.++|.+|++.|| |..|.|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccE-EEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 356666 9999999999999999999999999998743 3566 9999999999999999999 999999
Q ss_pred CCcceEEEEeecCCCC
Q 019429 204 GGFCKLHISYSRHTDL 219 (341)
Q Consensus 204 ~~~~~l~v~~s~~~~~ 219 (341)
+ .|+|+|++.+..
T Consensus 91 ~---~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 R---QLKVDLAVTRDE 103 (111)
T ss_dssp C---EEEEECCCCCCC
T ss_pred E---EEEEEECCCCcc
Confidence 9 999999977643
No 224
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=8e-15 Score=115.22 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCcee---CCCCc
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGF 206 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i---~~~~~ 206 (341)
.++.|+ |+||+..+|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|++.|||..+ .++
T Consensus 12 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g~-- 86 (106)
T 2dgp_A 12 DAIKLF--IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC-AFLTYCERESALKAQSALHEQKTLPGMNR-- 86 (106)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSE-EEEEESSHHHHHHHHHHHTTTCCCTTCSS--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhcCCcccCCCCc--
Confidence 355555 9999999999999999999999999998753 2576 99999999999999999999998 677
Q ss_pred ceEEEEeecCCC
Q 019429 207 CKLHISYSRHTD 218 (341)
Q Consensus 207 ~~l~v~~s~~~~ 218 (341)
.|+|+|++.+.
T Consensus 87 -~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 -PIQVKPADSES 97 (106)
T ss_dssp -CCEEEECCCCS
T ss_pred -eEEEEECCccc
Confidence 99999987654
No 225
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=120.67 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=67.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|.|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++||+. |+..| .
T Consensus 26 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---------~ 94 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTE-ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---------D 94 (116)
T ss_dssp HHTEEEEECCTTCCCH-HHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---------C
Confidence 3689999999999888 789999999999999988862 3456899999999999999987 88774 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 95 g~~l~V~~a~~~ 106 (116)
T 1x4b_A 95 GRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEEECCSSC
T ss_pred CEEEEEEECCCC
Confidence 999999998865
No 226
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=112.75 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEE-EcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i-~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
++.|+ |+||+..+|+++|+++|+.||.|. +++ ..+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 19 ~~~l~--V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 91 (97)
T 2e5j_A 19 AADVY--VGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRR-AFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVALA 91 (97)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTE-EEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEEC
T ss_pred CCEEE--EeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEc
Confidence 56666 999999999999999999999996 444 3455676 99999999999999999999999999 9999999
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 227
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=114.70 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=67.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.++.|+|+|||+++++ ++|+++|+.| .|.+|.+++. ..+++|||+|.+.++|++|++ |||..| .|
T Consensus 9 ~~~~l~v~nLp~~~t~-~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---------~g 76 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTE-KNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---------GG 76 (91)
T ss_dssp CCCEEEEECCCSSCCH-HHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---------TT
T ss_pred CccEEEEECCCCCCCH-HHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---------CC
Confidence 4688999999999988 7899999999 9999988763 234579999999999999999 999885 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.+++.+
T Consensus 77 r~i~v~~a~~~ 87 (91)
T 2dgw_A 77 RYIEVFREKSG 87 (91)
T ss_dssp EEEEEEEESSC
T ss_pred cEEEEEECCcC
Confidence 99999998855
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=8e-15 Score=118.92 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+++|+ |.||+..+|+++|+++|+.||.|++|.|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 21 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 94 (126)
T 3ex7_B 21 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 94 (126)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSC-EEEEESSHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 355666 99999999999999999999999999986542 576 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999997654
No 229
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-15 Score=117.75 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=66.3
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceE-EEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~-v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+.|+|+|||+++++ ++|+++|+.||.|.+ |.+.. +..+++|||+|.+.++|++|++. |+.. +.+
T Consensus 15 ~~~l~V~nLp~~~te-~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~---------~~g 83 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSK-EEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER---------IGH 83 (104)
T ss_dssp CCEEEEESCCTTCCH-HHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC---------SSS
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch---------hCC
Confidence 578999999999988 799999999999988 66654 33456899999999999999997 8877 479
Q ss_pred ceEEEEeccCCcc
Q 019429 81 CTLRITYSAHTDL 93 (341)
Q Consensus 81 ~~i~v~~s~~~~l 93 (341)
+.|+|.+++.+++
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999999876543
No 230
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=2.8e-15 Score=113.56 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=63.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|++ +++..| .
T Consensus 10 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~ 78 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSK-KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL---------D 78 (87)
T ss_dssp CTTEEEEECCCTTCCH-HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE---------C
Confidence 4689999999999977 799999999999999988762 235679999999999999996 577764 7
Q ss_pred CceEEEEec
Q 019429 80 PCTLRITYS 88 (341)
Q Consensus 80 g~~i~v~~s 88 (341)
|+.|+|++|
T Consensus 79 g~~i~v~~A 87 (87)
T 3s7r_A 79 GRVIDPKKA 87 (87)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 999999875
No 231
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.3e-15 Score=118.40 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=69.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..|...-+ ....+
T Consensus 24 ~~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~-~~~~~ 101 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDE-QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG-VSAPT 101 (114)
T ss_dssp CTTEEEEESCCTTCCH-HHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT-SCCCS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc-ccCCC
Confidence 3578999999999887 789999999999999988763 234579999999999999999999998631000 00147
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
++|+|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=2.4e-15 Score=121.68 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=67.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|||+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|+ .|||..| .|
T Consensus 36 ~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g 104 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA-QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---------RG 104 (124)
T ss_dssp HTEEEEEEECTTCCH-HHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---------TT
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---------CC
Confidence 588999999999887 799999999999999988762 34568999999999999999 7999985 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|++++..
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999998854
No 233
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=8.5e-15 Score=119.79 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.||+|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 45 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~lng~~i~g~---~l 118 (129)
T 2kxn_B 45 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI 118 (129)
T ss_dssp CSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 466666 8999999999999999999999999998753 3566 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999987654
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=3.8e-15 Score=118.17 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=65.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+++ +.++++|||+|.+.++|++|++.+ |.. +.
T Consensus 24 ~~~~lfV~nLp~~~te-~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~---------l~ 92 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQ-EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE---------LD 92 (109)
T ss_dssp --CCEEEESCCTTCCH-HHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE---------ET
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc---------CC
Confidence 4689999999999988 78999999999999998886 234567999999999999999976 455 47
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.++..+
T Consensus 93 g~~l~V~~a~~~ 104 (109)
T 2rs2_A 93 SKTIDPKVAFPR 104 (109)
T ss_dssp TEEEEEEECCCC
T ss_pred CEEEEEEEccCC
Confidence 999999998865
No 235
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.5e-14 Score=121.87 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.||+|++|.|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 38 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 111 (156)
T 1h2v_Z 38 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II 111 (156)
T ss_dssp TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 356666 99999999999999999999999999987543 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999997644
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=3.4e-15 Score=125.88 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=69.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.++.|||+|||+++++ ++|+++|+.||+|.+|.+.+ +.++++|||+|.+.++|++|++.|||..| .
T Consensus 69 ~~~~l~v~nl~~~~~~-~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 138 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSP-DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------D 138 (158)
T ss_dssp BCCEEEEESCCTTCCH-HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---------S
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 3689999999999888 79999999999999998876 23556899999999999999999999884 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|++++.+
T Consensus 139 g~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 GRELRVQMARYG 150 (158)
T ss_dssp SSEEEEEEECCS
T ss_pred CeEEEEEECCCC
Confidence 999999999855
No 237
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=111.26 Aligned_cols=75 Identities=17% Similarity=0.431 Sum_probs=67.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHccc--CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
++++|+ |+||+..+|+++|+++|+.| |.|.+|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 84 (99)
T 2cpd_A 14 SVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEVT 84 (99)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred CcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCe-EEEEeCCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence 456666 99999999999999999999 999998875 365 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
|++.+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 997654
No 238
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=113.19 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=65.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcC-ceeCCCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g-~~i~~~~~~~l~v~ 212 (341)
.++.|+ |+||+..+|+++|+++|++||. |..+.+.. +|+ |||+|.+.++|.+|++.||| ..|.++ .|+|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~--~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~ 78 (93)
T 2cqh_A 7 GMNKLY--IGNLSPAVTADDLRQLFGDRKLPLAGQVLLK--SGY-AFVDYPDQNWAIRAIETLSGKVELHGK---IMEVD 78 (93)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHTTCCCSSCEEEE--TTE-EEECCSCHHHHHHHHHHHTTTCEETTE---ECEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEEcC--CCE-EEEEECCHHHHHHHHHHccCCeeECCE---EEEEE
Confidence 355666 9999999999999999999999 55555532 465 99999999999999999999 999998 99999
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
|++.+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 239
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.2e-14 Score=114.45 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=67.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++.|+ |.||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 28 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 101 (107)
T 3ulh_A 28 TGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGT-ADVHFERKADALKAMKQYNGVPLDGR---PMN 101 (107)
T ss_dssp CSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence 356666 99999999999999999999999999987543 345 99999999999999999999999998 999
Q ss_pred EEeec
Q 019429 211 ISYSR 215 (341)
Q Consensus 211 v~~s~ 215 (341)
|+|++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 240
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=116.50 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+++|+ |+||+..+|+++|+++|+.||+|++|+|... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 34 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 107 (124)
T 2kt5_A 34 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD 107 (124)
T ss_dssp SCEEEE--EESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHcCCCEECCc---EEE
Confidence 355666 9999999999999999999999999998764 3566 99999999999999999999999999 999
Q ss_pred EEeecCCCC
Q 019429 211 ISYSRHTDL 219 (341)
Q Consensus 211 v~~s~~~~~ 219 (341)
|+||.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999976554
No 241
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=115.39 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=69.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+||+..+|+++|+++|+.||.|.+|.+.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 8 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 81 (104)
T 1p1t_A 8 LRSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALR 81 (104)
T ss_dssp HSCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred ccEEE--EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence 44556 99999999999999999999999999987542 455 99999999999999999999999999 999
Q ss_pred EEeecCCCC
Q 019429 211 ISYSRHTDL 219 (341)
Q Consensus 211 v~~s~~~~~ 219 (341)
|+|++.+..
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999987654
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=114.07 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=68.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
..+.|+ |.||+..+|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|++.||+ .|.++ .|
T Consensus 16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~~~~-~~~g~---~l 88 (116)
T 2cqd_A 16 TFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR---KA 88 (116)
T ss_dssp SSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhCCC-cCCCE---EE
Confidence 466666 9999999999999999999999999998754 2566 99999999999999999998 89998 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++...
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999987543
No 243
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=119.06 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
..++|+ |+||+..+|+++|+++|+.||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 41 ~~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 114 (139)
T 1u6f_A 41 VLRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---RL 114 (139)
T ss_dssp TTSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 356666 99999999999999999999999999987542 455 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++...
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 244
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1.3e-14 Score=110.40 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=69.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
++.|+ |+|||..+|+++|+++|++| +|.+|++. +.+|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+|++
T Consensus 5 ~~~l~--V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGIL--VKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRT-AFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP 76 (88)
T ss_dssp CCCEE--EESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTE-EEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcE-EEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcC
Confidence 45556 99999999999999999999 99999886 45676 99999999999999999999999999 99999997
Q ss_pred CCCCc
Q 019429 216 HTDLS 220 (341)
Q Consensus 216 ~~~~~ 220 (341)
.+.+.
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 76643
No 245
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-15 Score=117.06 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=66.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..++|+|+|||+++++ ++|+++|+.||+|..+ ...+..+++|||+|.+.++|++|++.|||..| .|+.|
T Consensus 15 ~~~~l~V~nL~~~~t~-~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 83 (96)
T 1fjc_A 15 AARTLLAKNLSFNITE-DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSV 83 (96)
T ss_dssp GGGEEEEESCCSSCCH-HHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---------TTEEE
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEE
Confidence 3689999999999988 7899999999999877 22233456899999999999999999999885 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998755
No 246
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=1.9e-15 Score=118.01 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=68.2
Q ss_pred CcEEEEEeecCCC------CCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCC-
Q 019429 136 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYD- 203 (341)
Q Consensus 136 s~vl~v~v~nl~~------~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~- 203 (341)
+++|+ |+|||. .+++++|+++|++||.|.+|+|... .+|+ |||+|.+.++|.+|++.|||..|.+
T Consensus 6 ~~~vf--V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIV--VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGF-LFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEE--EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEE--EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHhCCcccCCC
Confidence 56666 999999 9999999999999999999998643 2576 9999999999999999999999999
Q ss_pred CCcceEEEEeecCC
Q 019429 204 GGFCKLHISYSRHT 217 (341)
Q Consensus 204 ~~~~~l~v~~s~~~ 217 (341)
+ .|+|+++++.
T Consensus 83 r---~l~V~~a~~~ 93 (100)
T 3ns6_A 83 H---RLFLYTMKDV 93 (100)
T ss_dssp C---BCEEEESHHH
T ss_pred e---EEEEEECchh
Confidence 8 9999998754
No 247
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=123.05 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=65.6
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +..+++|||+|.+.++|++|++.|||..| .|
T Consensus 63 ~~~l~v~nlp~~~~~-~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 132 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDD-KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FG 132 (140)
T ss_dssp CCEEEEECCCTTCCH-HHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---------TT
T ss_pred CcEEEEEeCCCCCCH-HHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 578999999999888 78999999999999998876 23456899999999999999999999885 69
Q ss_pred ceEEEEec
Q 019429 81 CTLRITYS 88 (341)
Q Consensus 81 ~~i~v~~s 88 (341)
+.|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999975
No 248
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.1e-14 Score=110.50 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=66.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|.+.... +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 6 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~g~~~~g~---~l~ 78 (89)
T 3ucg_A 6 ARSIY--VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF-AYIEFSDKESVRTSL-ALDESLFRGR---QIK 78 (89)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEE-EEEEESSTHHHHHHG-GGTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHH-hcCCCEECCc---EEE
Confidence 34555 99999999999999999999999999987542 566 999999999999999 9999999999 999
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
|++++.+
T Consensus 79 V~~a~~~ 85 (89)
T 3ucg_A 79 VIPKRTN 85 (89)
T ss_dssp EEETTTT
T ss_pred EEEccCC
Confidence 9998764
No 249
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=1.3e-14 Score=114.98 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=67.2
Q ss_pred CcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 136 SNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 136 s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
++.|+ |+||+.. +|+++|+++|+.||.|++|.+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 27 ~~~l~--V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~a 97 (110)
T 1wf1_A 27 NSRVF--IGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGY-AFVQYSNERHARAAVLGENGRVLAGQ---TLDINMA 97 (110)
T ss_dssp SSEEE--ECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTE-EEEECSSSHHHHHHHHHHTTCEETTE---ECCEEES
T ss_pred CcEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEC
Confidence 46666 9999999 999999999999999999999 3466 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+...
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 250
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-15 Score=118.68 Aligned_cols=77 Identities=16% Similarity=0.051 Sum_probs=65.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..++|+|+|||+++++ ++|+++|+.||.|.++++.. +.++++|||+|.+.++|++|++ |||..| .|
T Consensus 16 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---------~g 84 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV-AELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---------FG 84 (101)
T ss_dssp CSEEEEEECCCTTSCH-HHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---------TT
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---------CC
Confidence 3578999999999988 79999999999998732222 3456689999999999999998 999985 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.+++.+
T Consensus 85 ~~l~V~~a~~~ 95 (101)
T 1fj7_A 85 NEIKLEKPKGR 95 (101)
T ss_dssp BCCEEECCSCC
T ss_pred cEEEEEEcCCC
Confidence 99999998865
No 251
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=2.6e-15 Score=120.90 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=67.1
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCc---ceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGF---VHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~---V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+.|+|+|||+++++ ++|+++|+.||. |.+|.+... ..+++|||+|.+.++|++||+ |||..|
T Consensus 17 ~~~l~V~nLp~~~te-~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--------- 85 (118)
T 2db1_A 17 GYVVKLRGLPWSCSI-EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM--------- 85 (118)
T ss_dssp CCEEEEESCCTTCCH-HHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---------
T ss_pred CcEEEEeCCCCCCCH-HHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---------
Confidence 577999999999988 789999999999 889987752 234579999999999999999 999884
Q ss_pred CCceEEEEeccCCc
Q 019429 79 GPCTLRITYSAHTD 92 (341)
Q Consensus 79 ~g~~i~v~~s~~~~ 92 (341)
.|+.|+|.+++.++
T Consensus 86 ~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 86 GHRYIEVFKSHRTE 99 (118)
T ss_dssp TTEEEEEEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 79999999988654
No 252
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=113.75 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=69.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCce-eCCCCcceE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCKL 209 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~-i~~~~~~~l 209 (341)
+..|+ |+||+..+|+++|+++|+. ||.|++|.|..+. +|+ |||+|.+.++|.+|++.|||.. |.|+ .|
T Consensus 9 ~~~l~--V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~g~---~l 82 (104)
T 2dhg_A 9 EYSLF--VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGY-GFVKFTDELEQKRALTECQGAVGLGSK---PV 82 (104)
T ss_dssp CCCEE--EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHHHTTTCCSSSSS---CC
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHHHccCCcccCCE---eE
Confidence 55666 9999999999999999999 9999999987642 455 9999999999999999999999 9999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876553
No 253
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=2.4e-14 Score=114.19 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=69.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC--CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
++++|+ |+||+..+|+++|+++|+.||.|.+|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 80 (115)
T 3lqv_A 7 VNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT-AYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVL 80 (115)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTC-EEEEESSHHHHHHHHHHHTTCBSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 356666 9999999999999999999999999998753 3576 99999999999999999999999999 99999
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
|++...
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 997543
No 254
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=115.06 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=68.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCee--------EEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCcee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 201 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--------~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i 201 (341)
.++.|+ |+||+..+|+++|+++|+.||.|. +|+|+..+ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeE-EEEEECCHHHHHHHHHHcCCCcc
Confidence 356666 999999999999999999999999 68876542 566 99999999999999999999999
Q ss_pred CCCCcceEEEEeecCCC
Q 019429 202 YDGGFCKLHISYSRHTD 218 (341)
Q Consensus 202 ~~~~~~~l~v~~s~~~~ 218 (341)
.++ .|+|+|++.+.
T Consensus 91 ~g~---~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGS---KLKVSLARKKP 104 (113)
T ss_dssp TTE---ECEEECSSCCC
T ss_pred CCC---EEEEEECCCCC
Confidence 998 99999987654
No 255
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=1.8e-15 Score=124.91 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=66.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCc---ceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~---V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.+.|+|+||||++|+ ++|+++|+.||. |.+|.+.+ +.++++|||+|.+.++|++|++ |||..|
T Consensus 44 ~~~lfVgnLp~~~te-~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l--------- 112 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSV-EDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM--------- 112 (136)
T ss_dssp TCEEEEESCCTTCCH-HHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES---------
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE---------
Confidence 467999999999988 789999999999 88888775 2334579999999999999999 999884
Q ss_pred CCceEEEEeccCCc
Q 019429 79 GPCTLRITYSAHTD 92 (341)
Q Consensus 79 ~g~~i~v~~s~~~~ 92 (341)
.|+.|+|.+++.++
T Consensus 113 ~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 113 GHRYIEVFKSHRTE 126 (136)
T ss_dssp SSSEEEEEECCHHH
T ss_pred CCEEEEEEECChHH
Confidence 79999999987553
No 256
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=112.31 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=64.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..++|+|+|| +++ |++|+++|++||+|.+|.+.+ .+++|||+|.+.++|++|++.|||..| .|++|
T Consensus 14 ~~~~l~V~n~--~~t-~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l 79 (97)
T 1x5p_A 14 KGNTLYVYGE--DMT-PTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQL 79 (97)
T ss_dssp CCSEEEEECS--SCC-HHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEE---------TTEEE
T ss_pred CCCEEEEcCC--CCC-HHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence 4678999996 554 589999999999999998853 455799999999999999999999985 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 80 ~v~~a~~~ 87 (97)
T 1x5p_A 80 KVNIARKQ 87 (97)
T ss_dssp EEECCSSC
T ss_pred EEEECCCC
Confidence 99999865
No 257
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=110.52 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=68.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcCC-CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~~-~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|+ +.... .|. |||+|.+.++|.+|++.|||..|.|+ .|+|+|
T Consensus 15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~ 88 (96)
T 2e44_A 15 IRKLQ--IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-VNVTYSSKDQARQALDKLNGFQLENF---TLKVAY 88 (96)
T ss_dssp CCCEE--EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCEEE--EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 45566 999999999999999999999999994 65543 444 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
+++++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 258
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=112.83 Aligned_cols=75 Identities=12% Similarity=0.330 Sum_probs=66.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++|+ |.||+..+|+++|+++|+.|| |++|.|... .+|+ |||+|.+.++|.+|+ .|||..|.++ .|
T Consensus 15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l 86 (104)
T 1wi8_A 15 PYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---RI 86 (104)
T ss_dssp CEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---EC
T ss_pred CCEEE--EeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeE-EEEEECCHHHHHHHH-hcCCCEeCCc---EE
Confidence 45555 999999999999999999999 999998643 2566 999999999999999 9999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 87 ~V~~a~~~~ 95 (104)
T 1wi8_A 87 RVDVADQAQ 95 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999997754
No 259
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=114.95 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=68.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+||+..+|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 25 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 97 (114)
T 2cq4_A 25 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAI-GLTGQRLLGV---PII 97 (114)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHH-HHTTEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcE-EEEEeCcHHHHHHHH-HcCCCEeCCe---EEE
Confidence 45566 9999999999999999999999999998743 3576 999999999999999 9999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++.+.
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99997654
No 260
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=114.00 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=65.3
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++ ++.. +.
T Consensus 14 ~~~~l~v~nlp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~---------~~ 81 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTE-QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHM---------ID 81 (103)
T ss_dssp CCCCEEEESCCSSCCH-HHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEE---------ET
T ss_pred CCCEEEEEcCCCcCCH-HHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCe---------eC
Confidence 3678999999999988 789999999999999988762 234589999999999999998 4555 47
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|.+++.+
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 GRWCDCKLPNSK 93 (103)
T ss_dssp TEEEEEECCCTT
T ss_pred CeEEEEEecCCC
Confidence 999999998865
No 261
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=8.5e-15 Score=124.66 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=68.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..++|||+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++||+.|||..| .
T Consensus 71 ~~~~l~V~nLp~~~t~-~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 140 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQE-DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------M 140 (165)
T ss_dssp -CEEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 3567999999999877 799999999999999988862 2346899999999999999999999885 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|++|+|.|+..+
T Consensus 141 g~~l~V~~a~~~ 152 (165)
T 1rk8_A 141 GQTIQVDWCFVK 152 (165)
T ss_dssp TEECEEEESEEC
T ss_pred CEEEEEEEecCC
Confidence 999999998855
No 262
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-15 Score=116.29 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=63.9
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..+.|+|+|||+++++ ++|+++|+.||.| +|.++.. .++++|||+|.+.++|++||+ +|+..| .+
T Consensus 14 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---------~g 81 (102)
T 1wez_A 14 TGHCVHMRGLPYRATE-NDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM---------QH 81 (102)
T ss_dssp SSCEEEEESCCTTCCH-HHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---------SS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeE---------CC
Confidence 3578999999999988 7999999999955 8877752 234579999999999999995 799874 79
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|..+...
T Consensus 82 r~i~V~~~~~~ 92 (102)
T 1wez_A 82 RYVELFLNSTA 92 (102)
T ss_dssp SCCEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 99999987754
No 263
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=7.9e-15 Score=112.07 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=61.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 85 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v 85 (341)
.+|+|+|||+++++ ++|+++|++||+|.+|.+++++ +++|||+|.+.++|+ .|+|..+. ++++.|+|
T Consensus 12 ~~l~V~~Lp~~~te-~~L~~~F~~~G~i~~v~i~~~s-rGfaFV~F~~~~~A~----~~~~~~~~-------~~g~~v~v 78 (89)
T 3d2w_A 12 SKVFVGRCTEDMTA-EELQQFFCQYGEVVDVFIPKPF-RAFAFVTFADDKVAQ----SLCGEDLI-------IKGISVHI 78 (89)
T ss_dssp CEEEEESCCTTCCH-HHHHHHHTTTSCEEEEECCSSC-CSEEEEEESCHHHHH----HHTTCEEE-------ETTEEEEE
T ss_pred CEEEEeCCCCCCCH-HHHHHHHhccCCEEEEEEeeCC-CCEEEEEECCHHHHH----HHcCCCcc-------cCCEEEEE
Confidence 57999999999998 7899999999999999988754 457999999999998 36777654 57999999
Q ss_pred EeccCC
Q 019429 86 TYSAHT 91 (341)
Q Consensus 86 ~~s~~~ 91 (341)
.++..+
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998865
No 264
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-15 Score=122.69 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=66.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEE-EEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v-~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.++.|+|+|||+++++ ++|+++|+.||.|.++ ++.. +..+++|||+|.+.++|++||+ |||..| .
T Consensus 24 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~ 92 (124)
T 1wel_A 24 AGFCVYLKGLPFEAEN-KHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---------G 92 (124)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---------T
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---------C
Confidence 3578999999999988 7999999999999874 3333 2335689999999999999999 999884 7
Q ss_pred CceEEEEeccCCc
Q 019429 80 PCTLRITYSAHTD 92 (341)
Q Consensus 80 g~~i~v~~s~~~~ 92 (341)
|+.|+|.+++.++
T Consensus 93 gr~i~V~~a~~~~ 105 (124)
T 1wel_A 93 NRFIQVHPITKKG 105 (124)
T ss_dssp TSCBEEEEECHHH
T ss_pred CcEEEEEECCHHH
Confidence 9999999998654
No 265
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=117.37 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=67.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCc---ceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 77 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~---V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 77 (341)
.++.|+|+|||+++++ ++|+++|+.||. |.+|.++. +.++++|||+|.+.++|++|++ ||+..
T Consensus 10 ~~~~l~V~nLp~~~te-~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~--------- 78 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTM-EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY--------- 78 (107)
T ss_dssp SCCEEEEECCCSSCCS-HHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC---------
T ss_pred CccEEEEeCCCCCCCH-HHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce---------
Confidence 3578999999999999 789999999998 89998776 2345689999999999999999 99987
Q ss_pred CCCceEEEEeccCCc
Q 019429 78 MGPCTLRITYSAHTD 92 (341)
Q Consensus 78 ~~g~~i~v~~s~~~~ 92 (341)
+.|+.|+|.+++.++
T Consensus 79 ~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 79 MGQRYVEVYEINNED 93 (107)
T ss_dssp SSSSCCCCEECCHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 479999999988654
No 266
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-15 Score=119.11 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=66.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcc-eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFV-HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V-~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.|.|+|+|||+++++ ++|+++|+.||.| .+|.++. +..+++|||+|.+.++|++||+. |+..| .|
T Consensus 15 ~~~l~V~nLp~~~t~-~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---------~g 83 (114)
T 2cpy_A 15 KVCAHITNIPFSITK-MDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL---------NG 83 (114)
T ss_dssp CCEEEEESCCTTSCH-HHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE---------TT
T ss_pred ccEEEEeCcCCcCCH-HHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc---------CC
Confidence 578999999999988 7899999999999 7887775 23456799999999999999987 98774 79
Q ss_pred ceEEEEeccCCc
Q 019429 81 CTLRITYSAHTD 92 (341)
Q Consensus 81 ~~i~v~~s~~~~ 92 (341)
+.|+|.+++.++
T Consensus 84 r~i~v~~a~~~~ 95 (114)
T 2cpy_A 84 REAFVHVVTLED 95 (114)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999998654
No 267
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=9.6e-15 Score=107.42 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=62.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
|+|+|||..+|+++|+++|+.||.|.+|.+...+ +|+ |||+|.+.++|.+|++ |||..|.|+ .|+|++|
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBE-EEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 5699999999999999999999999999986543 466 9999999999999998 999999999 9999875
No 268
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.8e-14 Score=107.33 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=67.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+++.|+ |+|+ .+|+++|+++|++||.|.+|.|.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 14 ~~~~l~--V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 84 (97)
T ss_dssp CCSEEE--EECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEECC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEEC
Confidence 356666 8886 899999999999999999999864 4466 99999999999999999999999998 9999999
Q ss_pred cCCCC
Q 019429 215 RHTDL 219 (341)
Q Consensus 215 ~~~~~ 219 (341)
+.+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77653
No 269
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=113.49 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=68.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEc------CCCCeEEEEEcCChhHHHHHHHHhc--CceeCCCC
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGG 205 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~------~~~g~~afV~F~~~~~A~~Ai~~l~--g~~i~~~~ 205 (341)
+++.|+ |+||+..+|+++|+++|+.||. |.+|.+.. +.+|+ |||+|.+.++|.+|++.|| +..|.|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLF--IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 355666 9999999999999999999998 99999872 33576 9999999999999999996 5899998
Q ss_pred cceEEEEeecCCC
Q 019429 206 FCKLHISYSRHTD 218 (341)
Q Consensus 206 ~~~l~v~~s~~~~ 218 (341)
.|+|+|++.+.
T Consensus 83 --~l~V~~a~~~~ 93 (109)
T 2dis_A 83 --QIAVDWAEPEI 93 (109)
T ss_dssp --CCEEEESCSSC
T ss_pred --eEEEEEcCCCC
Confidence 99999998664
No 270
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-15 Score=111.78 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=64.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+++.|+ |+||+..+|+++|+++|+.||.|.+|++...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~~ 77 (85)
T 1x4e_A 4 GSSGLY--IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ---MA 77 (85)
T ss_dssp CCCEEE--EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE---SC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhcCCeEeeE---EE
Confidence 356666 99999999999999999999999999987542 566 99999999999999999999999988 77
Q ss_pred EEEee
Q 019429 210 HISYS 214 (341)
Q Consensus 210 ~v~~s 214 (341)
+++++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 76654
No 271
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=112.67 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=65.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.++|+ |.|||..+|+++|+++|+.||.|.+++++.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 15 ~~~l~--v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~ 88 (98)
T 2cqp_A 15 PTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KVK 88 (98)
T ss_dssp SEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCeeCCe---EEE
Confidence 45555 9999999999999999999999987665432 1465 99999999999999999999999999 999
Q ss_pred EEeecCC
Q 019429 211 ISYSRHT 217 (341)
Q Consensus 211 v~~s~~~ 217 (341)
|+|++..
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998654
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.7e-14 Score=115.48 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=63.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce-----EE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----LH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~-----l~ 210 (341)
...|+ |.||++.+|+++|+++|+.||+|+.|.|..+ |+ |||+|++.++|.+||+.|||..|.++ . |+
T Consensus 16 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIR 87 (115)
T ss_dssp -CCEE--EEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CE-EEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEE
Confidence 34555 9999999999999999999999999998765 66 99999999999999999999999998 6 55
Q ss_pred EEeecC
Q 019429 211 ISYSRH 216 (341)
Q Consensus 211 v~~s~~ 216 (341)
|..++.
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 555443
No 273
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=7.2e-15 Score=113.07 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+++|+ |.|||..+|+++|+++|+.||.|.++++... .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~l 87 (95)
T 2ek1_A 14 GPTVIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (95)
T ss_dssp -CEEEE--EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeE-EEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence 355556 9999999999999999999999987776542 2455 99999999999999999999999999 99
Q ss_pred EEEeec
Q 019429 210 HISYSR 215 (341)
Q Consensus 210 ~v~~s~ 215 (341)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999875
No 274
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=114.09 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEc-CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~-~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |+||+..+|+++|+++|+.||.| ..+.+.. +.+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 24 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 97 (115)
T 2cpx_A 24 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL 97 (115)
T ss_dssp CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 466777 99999999999999999999999 5665553 33676 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|+|++.+..
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 275
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=116.22 Aligned_cols=74 Identities=19% Similarity=0.384 Sum_probs=66.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.+++|+ |+||+..+|+++|+++|+.||.|++|++... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 62 ~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 135 (140)
T 2ku7_A 62 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 135 (140)
T ss_dssp SCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSE-EEEEESCHHHHHHHHHHSTEEEETTE---EE
T ss_pred CCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 466666 9999999999999999999999999998654 2576 99999999999999999999999999 99
Q ss_pred EEEee
Q 019429 210 HISYS 214 (341)
Q Consensus 210 ~v~~s 214 (341)
+|+||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 276
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.5e-15 Score=114.24 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=63.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
..|+|+|+|||+++++ ++|+++|+.|+.|.-+.... +..+++|||+|.+.++|++|++.|||..| .|+.
T Consensus 14 ~~~~l~V~nLp~~~t~-~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 83 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTE-ETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---------DGNK 83 (102)
T ss_dssp CCSSEEEECCCTTCCH-HHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred CCCEEEEeCCCCccCH-HHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---------CCeE
Confidence 4689999999999988 78999999885433222111 23346899999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|++++.+
T Consensus 84 l~V~~a~~~ 92 (102)
T 2fc8_A 84 VTLDWAKPK 92 (102)
T ss_dssp CEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999865
No 277
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=117.36 Aligned_cols=78 Identities=13% Similarity=0.328 Sum_probs=68.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--EEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCc----eeCC
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIYD 203 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~----~i~~ 203 (341)
.++.|+ |+||++.+|+++|+++|+.||.|.. |+|..++ +|+ |||+|.+. +|.+|++.|||. .|.|
T Consensus 22 ~~~~lf--V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~-aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTII--LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF-AFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEE--ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC-EEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE-EEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 456666 9999999999999999999999966 8876433 677 99999999 999999999999 9999
Q ss_pred CCcceEEEEeecCCCC
Q 019429 204 GGFCKLHISYSRHTDL 219 (341)
Q Consensus 204 ~~~~~l~v~~s~~~~~ 219 (341)
+ .|+|+|++....
T Consensus 98 r---~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 K---TINVEFAKGSKR 110 (131)
T ss_dssp C---CCCCEECCCSCC
T ss_pred E---EEEEEECCCCCC
Confidence 9 999999987643
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=108.63 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=64.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+| +..+..|.+|||+|.+.++|.+|++ |||..|.|+ .|+|+++.
T Consensus 8 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVF--VSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPRE 80 (94)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSC
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECC
Confidence 45555 99999999999999999999999998 5443333259999999999999999 999999999 99999876
Q ss_pred CCC
Q 019429 216 HTD 218 (341)
Q Consensus 216 ~~~ 218 (341)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 279
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=3.8e-14 Score=110.82 Aligned_cols=76 Identities=11% Similarity=0.316 Sum_probs=66.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+.++|+ |+||+..+|+++|+++|+.|| |++|+|...+ +|+ |||+|.+.++|.+|+ .|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l 85 (103)
T 2dng_A 14 PPYTAY--VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGF-CYVEFDEVDSLKEAL-TYDGALLGDR---SL 85 (103)
T ss_dssp SCEEEE--EESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHG-GGTTCEETTE---EC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceE-EEEEECCHHHHHHHH-hhCCCeECCe---EE
Confidence 355565 999999999999999999997 9999987543 456 999999999999999 8999999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999987654
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.5e-16 Score=122.77 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=68.5
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPR 71 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~--------v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~ 71 (341)
.+|+|+|+|||+++++ ++|+++|+.||.|.+ |.++. +..+++|||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTI-ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 5789999999999988 789999999999998 76664 23456799999999999999999999884
Q ss_pred cCCCCCCCCceEEEEeccCC
Q 019429 72 YLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 72 ~~~~~~~~g~~i~v~~s~~~ 91 (341)
.|++|+|++++.+
T Consensus 83 -------~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 -------SGNPIKVSFATRR 95 (116)
Confidence 6999999998865
No 281
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=6.9e-15 Score=132.05 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=67.8
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccC--cceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG--~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
.++|||+||++++++ ++|+++|+.|| +|.+|.|++. .+++||||+|.+.++|++||+.|||..|
T Consensus 68 ~~~lfVgnL~~~~te-~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--------- 137 (229)
T 3q2s_C 68 RIALYIGNLTWWTTD-EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--------- 137 (229)
T ss_dssp -CEEEEESCCTTCCH-HHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---------
T ss_pred ccEEEEeCCCCCCCH-HHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---------
Confidence 357999999999988 79999999999 9999988762 3456899999999999999999999985
Q ss_pred CCceEEEEeccCC
Q 019429 79 GPCTLRITYSAHT 91 (341)
Q Consensus 79 ~g~~i~v~~s~~~ 91 (341)
.|+.|+|.+++..
T Consensus 138 ~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 138 HGQNPVVTPVNKQ 150 (229)
T ss_dssp TTBCCEEEECCHH
T ss_pred CCEEeEEEECCCC
Confidence 6999999998855
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=9.5e-15 Score=113.89 Aligned_cols=75 Identities=12% Similarity=0.334 Sum_probs=66.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC------CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
..+.|+ |+||+..+|+++|+++|+.|| |.+|+|.... +|+ |||+|.+.++|.+|+ .|||..|.|+ .
T Consensus 18 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~Ai-~l~g~~~~g~---~ 89 (100)
T 2j76_E 18 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNR---R 89 (100)
T ss_dssp --CEEE--ESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSC-EEEEECCHHHHHHHH-HTTTCCBTTB---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeE-EEEEECCHHHHHHHH-hcCCCEECCe---E
Confidence 356666 999999999999999999999 9999986542 577 999999999999999 8999999999 9
Q ss_pred EEEEeecCC
Q 019429 209 LHISYSRHT 217 (341)
Q Consensus 209 l~v~~s~~~ 217 (341)
|+|++++.+
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998764
No 283
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=111.39 Aligned_cols=77 Identities=14% Similarity=0.305 Sum_probs=68.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
..+.|+ |.||+..+|+++|+++|+.||+|++|+|..++ +|+ |||+|.+.++|.+|++. |+..|.++ .|
T Consensus 15 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g~---~l 87 (105)
T 2dh8_A 15 EIGKLF--VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGF-GFVKFKDPNCVGTVLAS-RPHTLDGR---NI 87 (105)
T ss_dssp SSSEEC--CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSTTHHHHHHHH-CSEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceE-EEEEECCHHHHHHHHHh-CCCeECCE---EE
Confidence 356666 99999999999999999999999999987642 355 99999999999999999 99999999 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|++++.+.
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999987665
No 284
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=112.41 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCC-----
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG----- 205 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~----- 205 (341)
..+.|+ |+||+..+|+++|+++|+.||.|.+|+|.... +|+ |||+|.+.++|.+|++.|||..|.++.
T Consensus 24 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 24 DPTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CTTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356666 99999999999999999999999999987643 355 999999999999999999999994320
Q ss_pred cceEEEEeecCC
Q 019429 206 FCKLHISYSRHT 217 (341)
Q Consensus 206 ~~~l~v~~s~~~ 217 (341)
..+|+|+|++++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 128999998754
No 285
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=1.4e-14 Score=109.47 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=63.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhcc----C-------cceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCc
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY 72 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~f----G-------~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~ 72 (341)
..|+|+|+|||+++++ ++|+++|+.| | +|.++.+.+ ++++|||+|.+.++|++|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~-~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~--- 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE-EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF--- 77 (87)
T ss_dssp GGGEEEEESCCTTCCH-HHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEE---
Confidence 4689999999999988 7999999999 8 899998875 3568999999999999999 9999985
Q ss_pred CCCCCCCCceEEEEe
Q 019429 73 LLPENMGPCTLRITY 87 (341)
Q Consensus 73 ~~~~~~~g~~i~v~~ 87 (341)
.|+.|+|+.
T Consensus 78 ------~g~~l~V~r 86 (87)
T 2hzc_A 78 ------QGQSLKIRR 86 (87)
T ss_dssp ------TTEECEEEC
T ss_pred ------CCeEEEEeC
Confidence 699999873
No 286
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=120.68 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=66.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceE--------EEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHK--------ITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~--------v~i~~-~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
..++|||+|||+++++ ++|+++|+.||.|.+ |++.+ +..+++|||+|.+.++|.+|++.|||..|
T Consensus 44 ~~~~l~V~nLp~~~te-~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~----- 117 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQE-KDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL----- 117 (143)
T ss_dssp CCSEEEEEEECTTCCH-HHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-----
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-----
Confidence 3578999999999888 799999999999876 43333 34556899999999999999999999985
Q ss_pred CCCCCCceEEEEeccCC
Q 019429 75 PENMGPCTLRITYSAHT 91 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~~ 91 (341)
.|+.|+|++++..
T Consensus 118 ----~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 ----FGKPMVVQFARSA 130 (143)
T ss_dssp ----TTEECEEEECCCS
T ss_pred ----CCcEEEEEECCCC
Confidence 6999999999754
No 287
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=112.25 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+++|+ |+|||..+|+++|+++|+.||.|.+|.|... .+|+ |||+|.+.++|.+|++ +||..|.|+ .|+|
T Consensus 11 ~~~lf--V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~-aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V 83 (103)
T 1s79_A 11 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI 83 (103)
T ss_dssp GGCEE--EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCE-EEEEESSHHHHHHHHT-SSCCCCTTT---TCEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence 45566 9999999999999999999999999998753 3676 9999999999999999 999999999 9999
Q ss_pred EeecC
Q 019429 212 SYSRH 216 (341)
Q Consensus 212 ~~s~~ 216 (341)
.+++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98764
No 288
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=5.9e-14 Score=106.17 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=63.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
..+.|+ |+||+..+|+++|+++|+.||.|.+|++...+ +|+ |||+|.+.++|.+|++ +++..|.|+ .|
T Consensus 10 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i 82 (87)
T 3s7r_A 10 DAGKMF--VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF-GFILFKDAASVEKVLD-QKEHRLDGR---VI 82 (87)
T ss_dssp CTTEEE--EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSTHHHHHHHH-SSCEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccE-EEEEECCHHHHHHHHH-hCCCEECCE---EE
Confidence 356666 99999999999999999999999999987542 455 9999999999999996 588899998 99
Q ss_pred EEEee
Q 019429 210 HISYS 214 (341)
Q Consensus 210 ~v~~s 214 (341)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 289
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=6.1e-15 Score=108.41 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=61.2
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|+|+|||+++++ ++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|++|++ +++..| .|+.
T Consensus 1 ~l~v~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~---------~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV---------GLSK 69 (75)
T ss_dssp CEEESCCCSSCCH-HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB---------TTBC
T ss_pred CEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE---------CCEE
Confidence 4899999999988 78999999999999998765 2345679999999999999998 488774 6999
Q ss_pred EEEEec
Q 019429 83 LRITYS 88 (341)
Q Consensus 83 i~v~~s 88 (341)
|+|++|
T Consensus 70 l~v~~a 75 (75)
T 1iqt_A 70 CEIKVA 75 (75)
T ss_dssp CCEEEC
T ss_pred EEEEEC
Confidence 998875
No 290
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=2.8e-14 Score=115.39 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=67.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+||+..+|+++|+++|+.||.|++|++..++ +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 36 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 108 (124)
T 2jwn_A 36 KRSVY--VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY-AYIEFAERNSVDAAV-AMDETVFRGR---TIK 108 (124)
T ss_dssp HTEEE--EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE-EEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE-EEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence 45566 99999999999999999999999999987532 455 999999999999999 8999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++...
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99987654
No 291
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=114.41 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=65.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+.|+|+||||++++ ++|+++|+.| .|.+|.|+. +.++++|||+|.+.++|++|+ .||+..| .|+
T Consensus 16 ~~~v~V~nLp~~~te-~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---------~gr 83 (109)
T 2dnn_A 16 DLYVSVHGMPFSAME-NDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---------IQR 83 (109)
T ss_dssp HHEEEEECCCSSCCH-HHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---------TTE
T ss_pred CCEEEEeCCCCCCCH-HHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---------CCe
Confidence 357999999999988 7999999999 899998875 234567999999999999999 6999884 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
.|+|..++.+
T Consensus 84 ~i~V~~a~~~ 93 (109)
T 2dnn_A 84 YVEVSPATER 93 (109)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECCcc
Confidence 9999887754
No 292
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=110.00 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=64.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
++++|+ |.||+..+|+++|+++|+.||.|.-+.... +.+|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~ 87 (101)
T 2fc9_A 14 ESKTLV--LSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREIEGR---AIRLEL 87 (101)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSE-EEEECSSHHHHHHHHHHTSSEEETTE---EEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHhCCCEeCCe---EEEEEE
Confidence 466777 999999999999999999999883211111 23566 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
++.+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87654
No 293
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=110.82 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=66.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.+++|+ |+||+..+|+++|+++|+.||.|..+..-.+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 88 (96)
T 1fjc_A 15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT 88 (96)
T ss_dssp GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEc
Confidence 356666 99999999999999999999999877211223566 99999999999999999999999999 9999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 294
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=1.7e-14 Score=129.85 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=68.9
Q ss_pred ecccccccCCCCCCC--------CHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCC
Q 019429 4 ICRPLSRKYLQWQLS--------ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 75 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t--------~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~ 75 (341)
.+|+|||+||+++++ +|++|+++|++||+|.+|.+++ ++++|||+|.+.++|+.|++.|||+.|. ++
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~---~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLL---LP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCC---CT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEe---cc
Confidence 589999999999984 5689999999999999999886 3467999999999999999999999961 00
Q ss_pred CC------CCCceEEEEeccCC
Q 019429 76 EN------MGPCTLRITYSAHT 91 (341)
Q Consensus 76 ~~------~~g~~i~v~~s~~~ 91 (341)
.. ..|+.|.|.|++.+
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccCCCCEEEEEEccCC
Confidence 00 06899999999854
No 295
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=5.3e-14 Score=107.43 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+..+|+ |+||++.+|+++|+++|++||.|++|+|..+++|+ |||+|++.++|. .|+|..+.++ ...|+|+++
T Consensus 10 ~~~~l~--V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGf-aFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVF--VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF-AFVTFADDKVAQ----SLCGEDLIIK-GISVHISNA 81 (89)
T ss_dssp -CCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSE-EEEEESCHHHHH----HHTTCEEEET-TEEEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCE-EEEEECCHHHHH----HHcCCCcccC-CEEEEEEEc
Confidence 356666 99999999999999999999999999998877897 999999999998 3677776522 239999998
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 296
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=121.87 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=68.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
.+.|+ |+||++.+|+++|+++|+.|| .|.+|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 55 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr---~ 128 (156)
T 3n9u_C 55 RAAVY--VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGE---K 128 (156)
T ss_dssp -CEEE--EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence 45555 999999999999999999999 99999987542 466 99999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|++++.+.+
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999976543
No 297
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=1.7e-14 Score=127.64 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=68.4
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~--~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
++.|+|+|||+++++ ++|+++|+.||+|.+|.+++. .++++|||+|.+.|+|++|++.|||..| .|++
T Consensus 103 ~~~l~v~nl~~~~t~-~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~---------~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN-KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRK 172 (213)
T ss_dssp TTEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEE
T ss_pred cccceECCcccccHH-HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE---------CCEE
Confidence 467999999999988 799999999999999988762 2356799999999999999999999985 6999
Q ss_pred EEEEeccCC
Q 019429 83 LRITYSAHT 91 (341)
Q Consensus 83 i~v~~s~~~ 91 (341)
|+|.+++.+
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999999854
No 298
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=7.3e-15 Score=111.96 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=63.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
|+|+||+..+|+++|+++|+.||+|++|.+..+ .+|+ |||+|.+.+ |.+|++.|||..|.|+ .|+|++|.
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~~a~ 78 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGF-GFVEMQEES-VSEAIAKLDNTDFMGR---TIRVTEAN 78 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEE-EEEEECTTH-HHHHHHTSCSSCCSSS---SCSEEEC-
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceE-EEEEECCHH-HHHHHHHhCCCEECCe---EEEEEEcC
Confidence 559999999999999999999999999998743 2566 999999999 9999999999999999 99999987
Q ss_pred CCCC
Q 019429 216 HTDL 219 (341)
Q Consensus 216 ~~~~ 219 (341)
....
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 299
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=6.4e-15 Score=122.07 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=65.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..+.|+|+|||+++++ ++|+++|+.|| |++|.|+. +.++++|||+|.+.++|++|| .+|+..| .+
T Consensus 45 ~~~~lfV~nLp~~~te-~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---------~g 112 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATE-NDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM---------QH 112 (139)
T ss_dssp CCCCEECCSCCTTCCH-HHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS---------SS
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE---------CC
Confidence 3578999999999998 78999999999 67888775 234557999999999999999 7899874 79
Q ss_pred ceEEEEeccCCc
Q 019429 81 CTLRITYSAHTD 92 (341)
Q Consensus 81 ~~i~v~~s~~~~ 92 (341)
+.|+|..++.++
T Consensus 113 R~i~V~~a~~~~ 124 (139)
T 2hgn_A 113 RYIELFLNSTTG 124 (139)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999887553
No 300
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=113.14 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=66.5
Q ss_pred ecccccccCCCCCCC----------CHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcC
Q 019429 4 ICRPLSRKYLQWQLS----------ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 73 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t----------~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~ 73 (341)
..|.|.++||-.... .|++|+++|++||+|.+|.|..+..+++|||+|.+.++|++|++.|||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---- 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF---- 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE----
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE----
Confidence 357899999943322 157999999999999999776555667899999999999999999999985
Q ss_pred CCCCCCCceEEEEeccCC
Q 019429 74 LPENMGPCTLRITYSAHT 91 (341)
Q Consensus 74 ~~~~~~g~~i~v~~s~~~ 91 (341)
.|++|+|.++..+
T Consensus 90 -----~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 -----GGRQITAQAWDGT 102 (112)
T ss_dssp -----TTEECEEEECCSC
T ss_pred -----CCcEEEEEEeCCC
Confidence 6999999998765
No 301
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=105.67 Aligned_cols=75 Identities=7% Similarity=0.130 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
..+|+ |+||+..+|+++|+++|+.| .|.+|+|.... +|+ |||+|.+.++|.+|++ |||..|.|+ .|+|
T Consensus 10 ~~~l~--v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~g~~~~gr---~i~v 81 (91)
T 2dgw_A 10 CHTVK--LRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGY-IFVDFSNEEEVKQALK-CNREYMGGR---YIEV 81 (91)
T ss_dssp CCEEE--EECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEE-EEEECSSHHHHHHHHH-SCSEEETTE---EEEE
T ss_pred ccEEE--EECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-hCCceeCCc---EEEE
Confidence 55666 99999999999999999999 99999987643 355 9999999999999999 999999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
.+++.+.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987653
No 302
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.50 E-value=2.6e-14 Score=123.29 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=68.6
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
.+.|+|+|||+++++ ++|+++|+.||+|.+|.+.. +..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 88 ~~~l~V~nLp~~~te-~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---------~Gr 157 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSD-ADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DGR 157 (177)
T ss_dssp CEEEEEECCCSCCCH-HHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---------SSS
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---------CCE
Confidence 568999999999988 78999999999999998876 23456799999999999999999999984 699
Q ss_pred eEEEEeccCC
Q 019429 82 TLRITYSAHT 91 (341)
Q Consensus 82 ~i~v~~s~~~ 91 (341)
+|+|+++...
T Consensus 158 ~l~V~~a~~~ 167 (177)
T 2f3j_A 158 PMDIQLVASQ 167 (177)
T ss_dssp BCEEEEESSG
T ss_pred EEEEEEecCC
Confidence 9999998855
No 303
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=105.03 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=62.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
|+|+|||..+|+++|+++|++||+|.+|.+..++ +|+ |||+|.+.++|.+|++.++ ..|.|+ .|+|++|
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCce-EEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEec
Confidence 4599999999999999999999999999987543 566 9999999999999999999 999999 9999886
No 304
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=6.5e-14 Score=110.99 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=66.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|+|..++ +|+ |||+|.+.++|.+|++.+ |..|.|+ .|+
T Consensus 25 ~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-afV~f~~~~~A~~Ai~~~-~~~l~g~---~l~ 97 (109)
T 2rs2_A 25 GCKMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQS-RHELDSK---TID 97 (109)
T ss_dssp -CCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTC-EEEEESSHHHHHHHHHSS-CEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcE-EEEEECCHHHHHHHHHHC-CCcCCCE---EEE
Confidence 55666 99999999999999999999999999987542 576 999999999999999986 5889998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|++++.+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987655
No 305
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=9.7e-15 Score=131.08 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=67.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
|+|+||++.+|+++|+++|+.|| +|++|+|+..+ +|| |||+|.+.++|.+||+.|||..|.++ .|+|+|
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr---~l~V~~ 146 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP 146 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTB---CCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCE---EeEEEE
Confidence 44999999999999999999999 99999987542 466 99999999999999999999999999 999999
Q ss_pred ecCCCC
Q 019429 214 SRHTDL 219 (341)
Q Consensus 214 s~~~~~ 219 (341)
++...+
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 976643
No 306
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=112.01 Aligned_cols=76 Identities=13% Similarity=0.257 Sum_probs=67.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+.|+ |+||+..+|+++|+++|+.||.|++|.|.... +|+ |||+|.+.++|.+|++. |+..|.|+ .|+
T Consensus 27 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~ 99 (116)
T 1x4b_A 27 FRKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMAA-RPHSIDGR---VVE 99 (116)
T ss_dssp HTEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCce-EEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence 45566 99999999999999999999999999987642 566 99999999999999998 99999999 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|+|++.+.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99987665
No 307
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=1e-13 Score=112.00 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=66.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
.++.|+ |+|+ .+|+++|+++|+.||.|.+|.+.. .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 38 ~~~~lf--Vgnl--~~te~~L~~~F~~~G~I~~v~i~~-~kg~-aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 108 (121)
T ss_dssp CCCEEE--EECS--SCCHHHHHHHHSTTCCCSCEEEET-TTTE-EEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEEC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHHccCCEEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEe
Confidence 366676 8886 799999999999999999999874 4576 99999999999999999999999999 9999999
Q ss_pred cCCC
Q 019429 215 RHTD 218 (341)
Q Consensus 215 ~~~~ 218 (341)
+.+.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 308
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=5.8e-14 Score=113.53 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=64.6
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
..++|+|+|| ++ +|++|+++|+.||+|.+|.+.+ ++++|||+|.+.++|++|++.|||..| .|++|
T Consensus 38 ~~~~lfVgnl--~~-te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~---------~g~~l 103 (121)
T 2bz2_A 38 KGNTLYVYGE--DM-TPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQL 103 (121)
T ss_dssp CCCEEEEECS--SC-CHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBC---------SSCBC
T ss_pred CCCEEEEcCC--CC-CHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE---------CCeEE
Confidence 3678999996 44 5589999999999999998863 456899999999999999999999984 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|++++.+
T Consensus 104 ~V~~a~~~ 111 (121)
T 2bz2_A 104 KVNIARKQ 111 (121)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99999865
No 309
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-14 Score=108.58 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=63.4
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.+|+|||+|||+++++ ++|+++|++||+|.+|.+.+++ +++|||+|.+.++|++ +++..+. +.++.|
T Consensus 4 ~~~~l~V~nLp~~~te-~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~----~~~~~~~-------~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE-DELREFFSQYGDVMDVFIPKPF-RAFAFVTFADDQIAQS----LCGEDLI-------IKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCH-HHHHHHSTTTSCCCEEECCSSC-CSCCEEECSCHHHHHH----TTTCEEE-------ETTEEE
T ss_pred CCcEEEEeCCCCCCCH-HHHHHHHHHcCCeeEEEEecCC-CCEEEEEECCHHHHHH----HhcCCce-------eCCEEE
Confidence 4689999999999988 7999999999999999988754 4479999999999975 4555543 579999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|.+++.+
T Consensus 71 ~v~~a~~~ 78 (88)
T 1wf0_A 71 HISNAEPK 78 (88)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998865
No 310
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=9.9e-14 Score=109.08 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 136 SNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 136 s~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
+++|+ |+|||..+ |+++|+++|+.||.|.+|.|.+. .+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 15 ~~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~~~g~-- 89 (105)
T 2nlw_A 15 DSVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ-- 89 (105)
T ss_dssp CSEEE--EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCE-EEEEECSSSHHHHHHHHCSSEECSTT--
T ss_pred CCEEE--EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeE-EEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 56666 99999999 78999999999999999998742 2576 99999999999999999999999884
Q ss_pred ceEEEEeecCC
Q 019429 207 CKLHISYSRHT 217 (341)
Q Consensus 207 ~~l~v~~s~~~ 217 (341)
+.|+|++++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 38999998643
No 311
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=6.7e-14 Score=118.72 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=67.2
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..+.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||..+.+ ..+
T Consensus 94 ~~~~l~v~nl~~~~t~-~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~------g~~ 166 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTE-NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME------GCS 166 (175)
T ss_dssp GGSEEEEESCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT------TCS
T ss_pred CCCeEEEcCCCCcCCH-HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC------CCC
Confidence 4678999999999888 789999999999999988873 234579999999999999999999998731 125
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
++|+|+|+.
T Consensus 167 ~~l~V~~ad 175 (175)
T 3nmr_A 167 SPMVVKFAD 175 (175)
T ss_dssp SCCEEEECC
T ss_pred CCeEEEecC
Confidence 999999873
No 312
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.4e-14 Score=118.13 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=66.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+.|+|+|||+++++ ++|+++|+.||.|.++.+.+. ..+++|||+|.+.++|.+|++.|||..| .|
T Consensus 87 ~~~l~v~nl~~~~t~-~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 156 (166)
T 3md3_A 87 TFNLFVGDLNVNVDD-ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---------NG 156 (166)
T ss_dssp CEEEEEESCCTTCCH-HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---------TT
T ss_pred CceEEECCCCCCCCH-HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc---------CC
Confidence 467999999999987 799999999999999988752 3355799999999999999999999985 69
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+.|+|+||+
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999986
No 313
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=1.1e-13 Score=109.10 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred ecccccccCCCC--C--CCCHHHHHHHhhccCcceEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 4 ICRPLSRKYLQW--Q--LSASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 4 ~~r~~~~~NLp~--~--~t~e~~L~~lF~~fG~V~~v~i~~~-----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
..|.|.++||-. + -..+++|+++|++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||+.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~----- 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF----- 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-----
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-----
Confidence 468899999953 2 2356899999999999999988862 3456899999999999999999999985
Q ss_pred CCCCCCceEEEEeccCC
Q 019429 75 PENMGPCTLRITYSAHT 91 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~~ 91 (341)
.|++|+|.|+...
T Consensus 82 ----~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 ----GGRVVKACFYNLD 94 (105)
T ss_dssp ----TTEECEEEECCHH
T ss_pred ----CCcEEEEEEcCHH
Confidence 6999999998753
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.3e-13 Score=105.37 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=66.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
.++.|+ |.||+..+|+++|+++|+.||.|++|+|...+ +|+ |||+|.+.++|.+|++ +++.|.|+ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~--~~~~~~g~---~l 85 (103)
T 2cqg_A 14 KTSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMS--QRHMIDGR---WC 85 (103)
T ss_dssp CCCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHH--SCEEETTE---EE
T ss_pred CCCEEE--EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccce-EEEEECCHHHHHHHHH--cCCeeCCe---EE
Confidence 355666 99999999999999999999999999987543 355 9999999999999998 57889998 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|.|++.+.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cqg_A 86 DCKLPNSKQ 94 (103)
T ss_dssp EEECCCTTC
T ss_pred EEEecCCCC
Confidence 999987654
No 315
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=7.5e-14 Score=122.70 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=68.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
++.|+|+|||+++++ ++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..| .|
T Consensus 125 ~~~l~v~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~---------~g 194 (216)
T 2qfj_A 125 FNRIYVASVHQDLSD-DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL---------GG 194 (216)
T ss_dssp SCEEEEECCCTTCCH-HHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC---------SS
T ss_pred CcEEEEeCCCCcCCH-HHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe---------CC
Confidence 578999999999877 799999999999999988863 2356799999999999999999999985 69
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|+|+..+
T Consensus 195 ~~i~V~~a~~~ 205 (216)
T 2qfj_A 195 QYLRVGKAVTP 205 (216)
T ss_dssp SBCEEEECSSC
T ss_pred cEEEEEEecCC
Confidence 99999998865
No 316
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=1.8e-13 Score=107.91 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCCcEEEEEeecCCC-----CCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 134 PESNVLLASIENMQY-----AVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~-----~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
.++++|+ |.|+.. .-++++|+++|++||+|++|+|... .+|+ |||+|.+.++|.+|++.|||..+.
T Consensus 6 ~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~-~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR-IFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE-EEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE-EEEEECCHHHHHHHHHHHCCCEEC
Confidence 3578887 788852 2378999999999999999998753 2576 999999999999999999999999
Q ss_pred CCCcceEEEEeecCCCC
Q 019429 203 DGGFCKLHISYSRHTDL 219 (341)
Q Consensus 203 ~~~~~~l~v~~s~~~~~ 219 (341)
|+ .|+|+|++....
T Consensus 83 Gr---~i~v~~a~~~~f 96 (105)
T 2pe8_A 83 GR---VVKACFYNLDKF 96 (105)
T ss_dssp TE---ECEEEECCHHHH
T ss_pred Cc---EEEEEEcCHHHh
Confidence 99 999999976543
No 317
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=7.4e-14 Score=112.29 Aligned_cols=77 Identities=10% Similarity=0.198 Sum_probs=67.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
..+|+ |+||++++|+++|+++|+.||. |+.|+|..++ +|+ |||+|.+.++|.+|++ |||..|.++ .
T Consensus 17 ~~~l~--V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~ 89 (118)
T 2db1_A 17 GYVVK--LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGE-AFVELESEDDVKLALK-KDRESMGHR---Y 89 (118)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEE-EEEEBSSHHHHHHHGG-GTTEEETTE---E
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCeECCe---E
Confidence 55666 9999999999999999999999 8999887543 456 9999999999999999 999999999 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|.+++.++.
T Consensus 90 i~V~~a~~~~~ 100 (118)
T 2db1_A 90 IEVFKSHRTEM 100 (118)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999976653
No 318
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=118.22 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcc----eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFV----HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 78 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V----~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 78 (341)
+.|+|+||||++++ ++|+++|+.||+| .+|.|++ +.++++|||+|.+.++|++||+. |+.. +
T Consensus 24 ~~v~V~nLp~~~te-~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~---------l 92 (123)
T 2dha_A 24 VIVRMRGLPFTATA-EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL---------L 92 (123)
T ss_dssp CEEEECSCCTTCCH-HHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE---------S
T ss_pred CEEEEeCCCCCCCH-HHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe---------e
Confidence 57999999999988 7999999999986 5787765 23345799999999999999985 8877 4
Q ss_pred CCceEEEEeccCCc
Q 019429 79 GPCTLRITYSAHTD 92 (341)
Q Consensus 79 ~g~~i~v~~s~~~~ 92 (341)
.++.|+|..++.++
T Consensus 93 ~gR~i~V~~a~~~e 106 (123)
T 2dha_A 93 GKRYIELFRSTAAE 106 (123)
T ss_dssp SSCEECCEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 79999999887554
No 319
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=107.10 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=66.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeE-EEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~-v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
..+|+ |+||++.+|+++|+++|+.||.|.+ |+|..+ .+|+ |||+|.+.++|.+|++. |+..|.++ .|+
T Consensus 15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~-afV~F~~~~~a~~A~~~-~~~~~~gr---~i~ 87 (104)
T 1wg5_A 15 DGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALKK-HKERIGHR---YIE 87 (104)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHTT-TTCCSSSS---CCE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CcchhCCc---EEE
Confidence 55566 9999999999999999999999998 766532 2576 99999999999999998 99999999 999
Q ss_pred EEeecCCCC
Q 019429 211 ISYSRHTDL 219 (341)
Q Consensus 211 v~~s~~~~~ 219 (341)
|.++..+++
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 999876654
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=2.3e-14 Score=111.88 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=65.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
..|+|+|+|||+++++ ++|+++|+.||+|.+|.+++. ..+++|||+|.+.++|++|++ ++.. +.|
T Consensus 8 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~---------~~g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDE-TEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN---------FHG 75 (102)
T ss_dssp EEEEEEEECCCTTCCH-HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE---------ETT
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe---------ECC
Confidence 3578999999999988 789999999999999988872 234689999999999999998 8877 479
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.++..+
T Consensus 76 ~~l~v~~a~~~ 86 (102)
T 2xs2_A 76 KKLKLGPAIRK 86 (102)
T ss_dssp EECEEEEEEEC
T ss_pred EEEEEEECCcC
Confidence 99999988754
No 321
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=3.4e-12 Score=117.10 Aligned_cols=79 Identities=25% Similarity=0.465 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 135 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
++++|+ |+||+..+|+++|+ ++|+.||.|++|++.+ +.+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 8 ~~~~l~--V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (282)
T 3pgw_A 8 PNHTIY--INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK---P 81 (282)
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCc---E
Confidence 467777 99999999999966 9999999999999875 33576 99999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|+|++....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999977653
No 322
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.5e-14 Score=110.84 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCe-eEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v-~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
+..+|+ |+||++.+|+++|+++|+.||.| .+|+|..+ .+|+ |||+|.+.++|.+|++. ||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~~-~~~~~~gr---~i 86 (114)
T 2cpy_A 14 AKVCAH--ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSERL-HRKKLNGR---EA 86 (114)
T ss_dssp CCCEEE--EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGGG-CSEEETTE---EE
T ss_pred CccEEE--EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CCCccCCe---EE
Confidence 355666 99999999999999999999999 78887643 3577 99999999999999987 99999999 99
Q ss_pred EEEeecCCCCc
Q 019429 210 HISYSRHTDLS 220 (341)
Q Consensus 210 ~v~~s~~~~~~ 220 (341)
+|.+++.+...
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2cpy_A 87 FVHVVTLEDMR 97 (114)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999876543
No 323
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=6.3e-14 Score=118.79 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=66.7
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
++.|+|+|||+++++ ++|+++|++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||..| .|
T Consensus 94 ~~~l~v~nlp~~~t~-~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 163 (172)
T 2g4b_A 94 AHKLFIGGLPNYLND-DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---------GD 163 (172)
T ss_dssp TTCEEEECCCTTCCH-HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE---------TT
T ss_pred CCEEEEEcCCCcCCH-HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE---------CC
Confidence 578999999999887 799999999999999988763 2346799999999999999999999985 69
Q ss_pred ceEEEEecc
Q 019429 81 CTLRITYSA 89 (341)
Q Consensus 81 ~~i~v~~s~ 89 (341)
+.|+|+||.
T Consensus 164 ~~l~V~~As 172 (172)
T 2g4b_A 164 KKLLVQRAS 172 (172)
T ss_dssp EECEEEECC
T ss_pred eEEEEEeCC
Confidence 999999874
No 324
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=106.21 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=63.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
++++|+ |.||+..+|+++|+++|+.|+. |++.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 84 (102)
T 2fc8_A 14 PSKTLF--VKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF-GFVDFNSEEDAKAAKEAMEDGEIDGN---KV 84 (102)
T ss_dssp CCSSEE--EECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 466666 9999999999999999998854 4443321 455 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019429 210 HISYSRHTD 218 (341)
Q Consensus 210 ~v~~s~~~~ 218 (341)
+|+|++.+.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999997654
No 325
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=2.9e-13 Score=121.05 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=73.7
Q ss_pred CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 134 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
+++++|+ |+||+. .+|+++|+++|+.||.|++|++..+++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.
T Consensus 32 ~~~~~l~--V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v~ 105 (229)
T 2adc_A 32 AGNSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRIT 105 (229)
T ss_dssp CCCSEEE--EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCC-EEEEESCHHHHHHHHHHHTTCBCSSS---BCEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEE
Confidence 3577777 999999 99999999999999999999998877787 99999999999999999999999999 99999
Q ss_pred eecCCCCc
Q 019429 213 YSRHTDLS 220 (341)
Q Consensus 213 ~s~~~~~~ 220 (341)
|++.....
T Consensus 106 ~a~~~~~~ 113 (229)
T 2adc_A 106 LSKHQNVQ 113 (229)
T ss_dssp CCSCCCCC
T ss_pred EecCcccc
Confidence 99876543
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=2.4e-14 Score=116.51 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=63.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcce--EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVH--KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~--~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+.|+|+||||++++ ++|+++|+.| .|+ +|.|+. +.++++|||+|.+.++|++||+ +++.. +.
T Consensus 42 ~~~lfVgnLp~~~te-~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~---------l~ 109 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTK-EEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKER---------IG 109 (126)
T ss_dssp CCEEEEECCCTTCCH-HHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCC---------BT
T ss_pred CCEEEEeCCCCCCCH-HHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCE---------EC
Confidence 467999999999988 7999999999 666 887775 2345689999999999999998 47766 47
Q ss_pred CceEEEEeccCCc
Q 019429 80 PCTLRITYSAHTD 92 (341)
Q Consensus 80 g~~i~v~~s~~~~ 92 (341)
|+.|+|..++.++
T Consensus 110 gR~I~V~~a~~~e 122 (126)
T 2hgm_A 110 HRYIEVFKSSQEE 122 (126)
T ss_dssp TBCCCCEEECHHH
T ss_pred CEEEEEEECCHHH
Confidence 9999999887553
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.5e-14 Score=105.67 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=62.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCcee--CCCCcceEEEEe
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHISY 213 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i--~~~~~~~l~v~~ 213 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|+|..+.+|+ |||+|.+.++|.+| ++..+ .+. .|+|++
T Consensus 5 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~~----~~~~~~~~g~---~l~v~~ 74 (88)
T 1wf0_A 5 SSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQSL----CGEDLIIKGI---SVHISN 74 (88)
T ss_dssp CCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHHT----TTCEEEETTE---EEEEEC
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCE-EEEEECCHHHHHHH----hcCCceeCCE---EEEEEe
Confidence 56666 99999999999999999999999999998777787 99999999999754 55544 566 999999
Q ss_pred ecCCC
Q 019429 214 SRHTD 218 (341)
Q Consensus 214 s~~~~ 218 (341)
++++.
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 328
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=117.36 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+++|+ |.||+..+|+++|+++|+.||.|++|.|... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 87 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~-afV~F~~~~~A~~Ai~~lng~~l~Gr---~l~ 160 (177)
T 2f3j_A 87 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD 160 (177)
T ss_dssp TCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC-EEEEESCHHHHHHHHHHSTTCBCSSS---BCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEE
Confidence 456666 9999999999999999999999999998753 3566 99999999999999999999999999 999
Q ss_pred EEeecCCCC
Q 019429 211 ISYSRHTDL 219 (341)
Q Consensus 211 v~~s~~~~~ 219 (341)
|+||.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999976543
No 329
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=113.77 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEc--CCCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 135 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~--~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
++++|+ |+||+..+|+++|+++|+.||.|.. |++.. +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 44 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIY--VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEE--EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356666 9999999999999999999999876 33332 33566 99999999999999999999999998
Q ss_pred CcceEEEEeecCCCC
Q 019429 205 GFCKLHISYSRHTDL 219 (341)
Q Consensus 205 ~~~~l~v~~s~~~~~ 219 (341)
.|+|.|++....
T Consensus 121 ---~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 ---PMVVQFARSARP 132 (143)
T ss_dssp ---ECEEEECCCSCC
T ss_pred ---EEEEEECCCCCC
Confidence 999999976543
No 330
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=106.35 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=63.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
..+|+ |.|||+.+|+++|+++|+.|| +++|+|..++ +|+ |||+|.+.++|.+|++ +|+..|.++ .|+|
T Consensus 15 ~~~l~--V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~i~V 86 (102)
T 1wez_A 15 GHCVH--MRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVEL 86 (102)
T ss_dssp SCEEE--EESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEEE
Confidence 45566 999999999999999999999 4588876543 456 9999999999999995 799999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
..+....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9876543
No 331
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=103.00 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.2
Q ss_pred cEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 137 NVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 137 ~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
++|+ |+|||..+ |+++|+++|++||.|.+|++.+. .+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 2 ~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEE--EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCE-EEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEE--EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEE-EEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3455 99999999 67999999999999999998742 3576 99999999999999999999999875
No 332
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=8e-14 Score=117.56 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=67.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
.+.|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +.++++|||+|.+.++|.+|++ +||..| .|
T Consensus 87 ~~~l~V~nlp~~~t~-~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g 155 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRP-KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF---------KD 155 (167)
T ss_dssp CEEEEEEEECTTCCH-HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---------SS
T ss_pred CCeEEECCCCCCCCH-HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe---------CC
Confidence 468999999999988 78999999999999998876 2345689999999999999998 898874 79
Q ss_pred ceEEEEeccCC
Q 019429 81 CTLRITYSAHT 91 (341)
Q Consensus 81 ~~i~v~~s~~~ 91 (341)
+.|+|.+++++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999865
No 333
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=6.2e-14 Score=109.14 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=64.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE----cCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~----~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+..|+ |+||+..+|+++|+++|+.||.|..+.+. .+.+|+ |||+|.+.++|.+|++ |||..|.++ .|+|
T Consensus 17 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~-l~g~~~~g~---~l~V 89 (101)
T 1fj7_A 17 PFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIKL 89 (101)
T ss_dssp SEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGCCBTTB---CCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcE-EEEEECCHHHHHHHHh-cCCcEECCc---EEEE
Confidence 45555 99999999999999999999988772222 234676 9999999999999999 999999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
++++.+.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9987654
No 334
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.4e-13 Score=106.65 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=66.1
Q ss_pred CCcEEEEEeecCCCCCC-----------HHHHHHHHcccCCeeEEEEEcC-CCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 135 ESNVLLASIENMQYAVT-----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt-----------~~~L~~~F~~fG~v~~v~i~~~-~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
++++|+ |.||....+ +++|+++|++||.|++|.|..+ .+|+ |||+|.+.++|.+|++.|||..|.
T Consensus 14 ~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 14 HERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp SCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEET
T ss_pred CceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEE-EEEEECCHHHHHHHHHHcCCCEEC
Confidence 477777 889843332 5899999999999999987643 3676 999999999999999999999999
Q ss_pred CCCcceEEEEeecCCC
Q 019429 203 DGGFCKLHISYSRHTD 218 (341)
Q Consensus 203 ~~~~~~l~v~~s~~~~ 218 (341)
++ .|+|+|++...
T Consensus 91 gr---~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GR---QITAQAWDGTT 103 (112)
T ss_dssp TE---ECEEEECCSCC
T ss_pred Cc---EEEEEEeCCCC
Confidence 98 99999987653
No 335
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=1.2e-13 Score=113.86 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=67.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
..+|+ |+||++++|+++|+++|+.||. |++|+|..++ +|+ |||+|++.++|.+|++ |||..|.++ .
T Consensus 44 ~~~lf--VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~-aFV~F~~~e~a~~Al~-~~g~~l~gr---~ 116 (136)
T 2hgl_A 44 GFVVK--LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGE-AFVELGSEDDVKMALK-KDRESMGHR---Y 116 (136)
T ss_dssp TCEEE--EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEE-EEEECSSHHHHHHHHT-TTEEESSSS---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCEECCE---E
Confidence 55666 9999999999999999999999 8889887543 456 9999999999999999 999999999 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|.+++.++.
T Consensus 117 i~V~~a~~~e~ 127 (136)
T 2hgl_A 117 IEVFKSHRTEM 127 (136)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEECChHHH
Confidence 99999876653
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.3e-14 Score=110.88 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=58.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee-e------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE-K------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 77 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~-~------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 77 (341)
.|+|||+|||+++++ ++|+++|++||+|. +.++. + ..+++|||+|.+.++|++||+.|++
T Consensus 8 ~~~lfVgnLp~~~te-~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~----------- 74 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDE-DEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE----------- 74 (114)
T ss_dssp CCCEEEECCCTTCCH-HHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE-----------
T ss_pred CCEEEEcCCCCCCCH-HHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh-----------
Confidence 578999999999988 78999999999999 65554 1 3466899999999999999999954
Q ss_pred CCCceEEEEecc
Q 019429 78 MGPCTLRITYSA 89 (341)
Q Consensus 78 ~~g~~i~v~~s~ 89 (341)
+.|+.|.+..+.
T Consensus 75 ~~G~~~~~~~~~ 86 (114)
T 2dnl_A 75 EDGKLYLCVSSP 86 (114)
T ss_dssp ETTEEEEEECCS
T ss_pred cCCcEEEeccCC
Confidence 246667766544
No 337
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=8e-14 Score=102.34 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=61.5
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
|+|+|||..+|+++|+++|++||.|.+|.+..+ .+|+ |||+|.+.++|.+|++. ++..|.|+ .|+|++|
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCC-EEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCE-EEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence 559999999999999999999999999988643 2576 99999999999999985 89999998 8888875
No 338
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=9.7e-14 Score=118.18 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=66.8
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceE
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 83 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i 83 (341)
.++.|+|+|||+++++ ++|+++|+.||+|..+ ...+.++++|||+|.+.++|.+|++.|||..| .|+.|
T Consensus 98 ~~~~l~v~nlp~~~t~-~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~i 166 (175)
T 1fje_B 98 AARTLLAKNLSFNITE-DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSV 166 (175)
T ss_dssp GGGEEEEESCCSSCCH-HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---------TTEEE
T ss_pred cCCEEEEeCCCCCCCH-HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEE
Confidence 4688999999999887 7999999999999877 22244566899999999999999999999885 69999
Q ss_pred EEEeccCC
Q 019429 84 RITYSAHT 91 (341)
Q Consensus 84 ~v~~s~~~ 91 (341)
+|+|++.+
T Consensus 167 ~v~~a~~k 174 (175)
T 1fje_B 167 SLYYTGEK 174 (175)
T ss_dssp EEEECSSC
T ss_pred EEEecCCC
Confidence 99999865
No 339
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.6e-14 Score=113.82 Aligned_cols=76 Identities=5% Similarity=0.058 Sum_probs=65.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
..+|+ |+||++.+|+++|+++|+.||.|..++ +..+. +|+ |||+|.+.++|.+||+ |||..|.++ .|+
T Consensus 25 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~i~ 97 (124)
T 1wel_A 25 GFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FIQ 97 (124)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CBE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 45555 999999999999999999999998743 43322 466 9999999999999999 999999999 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|.+++.++
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997765
No 340
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=4.6e-13 Score=116.47 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=72.0
Q ss_pred CcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEee
Q 019429 136 SNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 214 (341)
Q Consensus 136 s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s 214 (341)
+++|+ |+||+. .+|+++|+++|+.||.|.+|++..+++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a 76 (198)
T 1qm9_A 3 NSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS 76 (198)
T ss_dssp CCEEE--EECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSC-CEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEEC
T ss_pred CcEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCE-EEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEe
Confidence 45666 999999 99999999999999999999998877787 99999999999999999999999999 9999999
Q ss_pred cCCCCc
Q 019429 215 RHTDLS 220 (341)
Q Consensus 215 ~~~~~~ 220 (341)
+.....
T Consensus 77 ~~~~~~ 82 (198)
T 1qm9_A 77 KHQNVQ 82 (198)
T ss_dssp CCCSCC
T ss_pred cCCCcC
Confidence 876543
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=1.6e-13 Score=118.90 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
..+.|+|+|||+++++ ++|+++|+.||.|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..| .
T Consensus 113 ~~~~l~v~nl~~~~~~-~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 182 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLND-DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL---------G 182 (198)
T ss_dssp CCCEEEEECCCTTCCH-HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4689999999998887 799999999999999988863 2356799999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|+|++++.+
T Consensus 183 g~~l~v~~a~~~ 194 (198)
T 2yh0_A 183 DKKLLVQRASVG 194 (198)
T ss_dssp TEECEEEESCCC
T ss_pred CEEEEEEECCCC
Confidence 999999999855
No 342
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.8e-13 Score=120.99 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCCcEEEEEeecCCCCC---------CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCcee---
Q 019429 134 PESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--- 201 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~v---------t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i--- 201 (341)
..+++|+ |+||+..+ ++++|+++|++||+|++|+|+..+ |+ |||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLf--VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~-AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLY--VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NC-GFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEE--EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceee--cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CE-EEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 3467777 89999988 799999999999999999998755 65 99999999999999999999999
Q ss_pred ---------CCCCcceEEEEeecCCC
Q 019429 202 ---------YDGGFCKLHISYSRHTD 218 (341)
Q Consensus 202 ---------~~~~~~~l~v~~s~~~~ 218 (341)
.|+ .|+|.||+.+.
T Consensus 208 ~~~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSC---CCEEEECC---
T ss_pred ccccccccCCCC---EEEEEEccCCC
Confidence 777 99999997653
No 343
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=5.8e-13 Score=112.22 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=68.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
++.|+ |+|||..+|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 76 (168)
T 1b7f_A 3 NTNLI--VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNK---RLK 76 (168)
T ss_dssp CSEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceE-EEEEECCHHHHHHHHHhcCCCEeCCc---EEE
Confidence 56666 99999999999999999999999999986542 466 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|.|++...
T Consensus 77 v~~~~~~~ 84 (168)
T 1b7f_A 77 VSYARPGG 84 (168)
T ss_dssp EEECCCCS
T ss_pred EEecCCCc
Confidence 99997654
No 344
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-14 Score=115.07 Aligned_cols=77 Identities=17% Similarity=0.370 Sum_probs=67.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcC-----CCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~-----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
++.|+ |+||+..+|+++|+++|+.||.|.. |+|... .+|+ |||+|.+.++|.+|++.|||..|.
T Consensus 7 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 7 NNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 55555 9999999999999999999999998 776543 2566 999999999999999999999999
Q ss_pred CCCcceEEEEeecCCC
Q 019429 203 DGGFCKLHISYSRHTD 218 (341)
Q Consensus 203 ~~~~~~l~v~~s~~~~ 218 (341)
++ .|+|+|++.+.
T Consensus 84 g~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GN---PIKVSFATRRA 96 (116)
Confidence 99 99999987654
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=105.19 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=65.0
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEE
Q 019429 137 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 212 (341)
Q Consensus 137 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~ 212 (341)
.+|+ |+||++.+|+++|+++|+.| .|++|+|..+ .+|+ |||+|.+.++|.+|+ .|||..|.++ .|+|.
T Consensus 17 ~~v~--V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V~ 88 (109)
T 2dnn_A 17 LYVS--VHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGN-GLVKFLSPQDTFEAL-KRNRMLMIQR---YVEVS 88 (109)
T ss_dssp HEEE--EECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSE-EEEECSSHHHHHHHH-HTTTEEETTE---EEEEE
T ss_pred CEEE--EeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeE-EEEEECCHHHHHHHH-hcCCCeECCe---EEEEE
Confidence 4555 99999999999999999999 8999998743 3577 999999999999999 6999999999 99998
Q ss_pred eecCCC
Q 019429 213 YSRHTD 218 (341)
Q Consensus 213 ~s~~~~ 218 (341)
.+...+
T Consensus 89 ~a~~~~ 94 (109)
T 2dnn_A 89 PATERQ 94 (109)
T ss_dssp ECCHHH
T ss_pred ECCccc
Confidence 886544
No 346
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=108.73 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=67.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcce
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 208 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~ 208 (341)
..+|+ |+||++.+|+++|+++|+.||. |.+|+|..+ .+|+ |||+|.+.++|.+|++ |||..|.++ .
T Consensus 11 ~~~l~--V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~ 83 (107)
T 2lmi_A 11 VFLIR--AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGD-ALIEMESEQDVQKALE-KHRMYMGQR---Y 83 (107)
T ss_dssp CCEEE--EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSE-EEEEBSSHHHHHHHHT-TTTCCSSSS---C
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCcceeCCe---E
Confidence 45555 9999999999999999999998 899988643 3566 9999999999999999 999999999 9
Q ss_pred EEEEeecCCCC
Q 019429 209 LHISYSRHTDL 219 (341)
Q Consensus 209 l~v~~s~~~~~ 219 (341)
|+|.+++.++.
T Consensus 84 i~V~~a~~~~~ 94 (107)
T 2lmi_A 84 VEVYEINNEDV 94 (107)
T ss_dssp CCCEECCHHHH
T ss_pred EEEEECCHHHH
Confidence 99999876653
No 347
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=9e-13 Score=110.68 Aligned_cols=77 Identities=18% Similarity=0.378 Sum_probs=68.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
+++|+ |+|||..+|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 2 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 75 (167)
T 1fxl_A 2 KTNLI--VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTK---TIK 75 (167)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred cceEE--EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeE-EEEEECCHHHHHHHHHHcCCCccCCc---eEE
Confidence 45566 99999999999999999999999999987643 255 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019429 211 ISYSRHTD 218 (341)
Q Consensus 211 v~~s~~~~ 218 (341)
|.++++..
T Consensus 76 v~~~~~~~ 83 (167)
T 1fxl_A 76 VSYARPSS 83 (167)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99997654
No 348
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=4e-13 Score=105.85 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=66.9
Q ss_pred ecccccccCC--CCCCCCH-------HHHHHHhhccCcceEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCC
Q 019429 4 ICRPLSRKYL--QWQLSAS-------GERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRS 68 (341)
Q Consensus 4 ~~r~~~~~NL--p~~~t~e-------~~L~~lF~~fG~V~~v~i~~~------~~g~~aFVeF~~~e~A~~Ai~~lng~~ 68 (341)
..|.|.++|+ +.+..++ ++|+++|++||+|.+|.|.+. .++++|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678889998 6666553 689999999999999998862 235679999999999999999999998
Q ss_pred cCCcCCCCCCCCceEEEEeccCC
Q 019429 69 IPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 69 i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
+ .||+|+|+|+...
T Consensus 84 f---------~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 F---------ANRVVVTKYCDPD 97 (105)
T ss_dssp E---------TTEECEEEEECHH
T ss_pred e---------CCCEEEEEEeCHH
Confidence 5 6999999998744
No 349
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=3.1e-13 Score=132.24 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=69.0
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.+++|||.|||+++++ ++|+++|+.||+|.+|.|+. +..++||||+|.+.++|.+||+.|||..| .
T Consensus 101 ~~~~lfV~nL~~~~te-~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---------~ 170 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTE-SKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---------D 170 (437)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---------C
Confidence 3578999999999988 79999999999999998875 23456899999999999999999999985 6
Q ss_pred CceEEEEeccCC
Q 019429 80 PCTLRITYSAHT 91 (341)
Q Consensus 80 g~~i~v~~s~~~ 91 (341)
|+.|.|.+++.+
T Consensus 171 gr~i~V~~a~~~ 182 (437)
T 3pgw_S 171 GRRVLVDVERGR 182 (437)
T ss_pred CEEEEEEEeCCC
Confidence 999999999854
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=6.8e-13 Score=100.08 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=62.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCC
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 204 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~ 204 (341)
++.|+ |+||+..+|+++|+++|+.| | .|.++.+... +|+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus 6 ~~~l~--V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~-afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 6 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNF-AFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcE-EEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 55666 99999999999999999999 8 9999988765 465 999999999999999 9999999998
Q ss_pred CcceEEEE
Q 019429 205 GFCKLHIS 212 (341)
Q Consensus 205 ~~~~l~v~ 212 (341)
.|+|+
T Consensus 81 ---~l~V~ 85 (87)
T 2hzc_A 81 ---SLKIR 85 (87)
T ss_dssp ---ECEEE
T ss_pred ---EEEEe
Confidence 88886
No 351
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.5e-13 Score=104.07 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=53.2
Q ss_pred CCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCC
Q 019429 18 SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 18 t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
++|++|+++|++||+|.+|.+++++ ++||||+|.+.++|++|++.+++ +.+++|+|+|++.+
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~~~~-rGfaFVeF~~~~~A~~Ai~~~~~-----------~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLSSKK-PGTAVVEFATVKAAELAVQNEVG-----------LVDNPLKISWLEGQ 90 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEESSS-SSEEEEEESCHHHHHHHHHTCCB-----------CSSSBCEEECSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEccCC-CCEEEEEECCHHHHHHHHHhcCC-----------CCCCeEEEEEccCC
Confidence 4579999999999999999988544 45799999999999999998665 34999999998755
No 352
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=3.9e-13 Score=116.33 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=65.7
Q ss_pred ecccccccCCCCCCCCHHHHHHHhhccCcceEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 4 ICRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 4 ~~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.++.|+|+|||+++++ ++|+++|+.||.|.+|.+++. ..+++|||+|.+.++|.+|++. +|..| .
T Consensus 103 ~~~~l~V~nLp~~~t~-~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~---------~ 171 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEE-HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV---------N 171 (196)
T ss_dssp CCSEEEEECCTTTCCH-HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE---------T
T ss_pred CcceEEEeCCCCCCCH-HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE---------C
Confidence 4578999999999887 799999999999999988862 2356799999999999999986 78774 7
Q ss_pred CceEEEEeccCCc
Q 019429 80 PCTLRITYSAHTD 92 (341)
Q Consensus 80 g~~i~v~~s~~~~ 92 (341)
|+.|+|.++..++
T Consensus 172 G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 172 GHNCEVRKALSKQ 184 (196)
T ss_dssp TEECEEEECC---
T ss_pred CEEEEEEecCChh
Confidence 9999999988653
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=9.2e-13 Score=103.77 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCcEEEEEeecC--CCCCC--------HHHHHHHHcccCCeeEEEEEcC-------CCCeEEEEEcCChhHHHHHHHHhc
Q 019429 135 ESNVLLASIENM--QYAVT--------LDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 135 ~s~vl~v~v~nl--~~~vt--------~~~L~~~F~~fG~v~~v~i~~~-------~~g~~afV~F~~~~~A~~Ai~~l~ 197 (341)
++++|. +.|+ +..+. +++|+++|++||.|++|+|.+. .+|+ |||+|.+.++|.+|++.||
T Consensus 4 ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE-EEEEESSHHHHHHHHHHHT
T ss_pred CCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE-EEEEECCHHHHHHHHHHhC
Confidence 578888 7787 22333 3689999999999999998753 3576 9999999999999999999
Q ss_pred CceeCCCCcceEEEEeecCCCC
Q 019429 198 GHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 198 g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
|..+.|+ .|+|+|+.....
T Consensus 81 G~~f~GR---~i~v~~~~~~~f 99 (105)
T 3v4m_A 81 GRKFANR---VVVTKYCDPDSY 99 (105)
T ss_dssp TCEETTE---ECEEEEECHHHH
T ss_pred CCEeCCC---EEEEEEeCHHHH
Confidence 9999999 999999866543
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1e-12 Score=105.74 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=65.3
Q ss_pred ecccccccCC--CCCCC--CHHHHHHHhhccCcceEEEEeeec--------CCceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 019429 4 ICRPLSRKYL--QWQLS--ASGERAHVFSAFGFVHKITTFEKT--------AGFQALVQFSDTETASSAKNALDGRSIPR 71 (341)
Q Consensus 4 ~~r~~~~~NL--p~~~t--~e~~L~~lF~~fG~V~~v~i~~~~--------~g~~aFVeF~~~e~A~~Ai~~lng~~i~~ 71 (341)
..|.|.++|+ +.+.. -++||++.|++||+|.+|+|.+.. .+++|||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 4688999998 33322 368999999999999999888732 125799999999999999999999985
Q ss_pred cCCCCCCCCceEEEEeccCC
Q 019429 72 YLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 72 ~~~~~~~~g~~i~v~~s~~~ 91 (341)
.||+|+|.|+...
T Consensus 97 -------~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 97 -------AGRKVVAEVYDQE 109 (118)
T ss_dssp -------TTEECEEEEECHH
T ss_pred -------CCcEEEEEEcChH
Confidence 6999999998743
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=5.3e-13 Score=116.61 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=63.5
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
-|+|+|+|||+++++ ++|+++|+.||+|.+|.+.+ +..+++|||+|.+.++|++|++.++ .. +.|+
T Consensus 109 ~~~l~V~nLp~~~t~-~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~---------~~Gr 177 (193)
T 2voo_A 109 NRSVYIKGFPTDATL-DDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QK---------YKET 177 (193)
T ss_dssp HTEEEEECCCTTCCH-HHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CE---------ETTE
T ss_pred cCEEEecCCCCcCCH-HHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-Ce---------ECCE
Confidence 378999999999877 79999999999999998886 3345689999999999999998665 45 4799
Q ss_pred eEEEEecc
Q 019429 82 TLRITYSA 89 (341)
Q Consensus 82 ~i~v~~s~ 89 (341)
.|+|.+++
T Consensus 178 ~l~V~~~~ 185 (193)
T 2voo_A 178 DLLILFKD 185 (193)
T ss_dssp ECEEEETT
T ss_pred EEEEEEhH
Confidence 99999866
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=5.6e-13 Score=103.86 Aligned_cols=75 Identities=11% Similarity=0.243 Sum_probs=65.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
++.|+ |+||+..+|+++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++ +|..|.|+ .|+|
T Consensus 9 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v 80 (102)
T 2xs2_A 9 PNTVF--VGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGY-GFVSFYNDVDVQKIVE--SQINFHGK---KLKL 80 (102)
T ss_dssp EEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence 45555 99999999999999999999999999987643 355 9999999999999999 99999998 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9986543
No 357
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.36 E-value=3.1e-13 Score=111.87 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=64.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
..+|+ |.||++.+|+++|+++|+.|| |++|+|..+ .+|+ |||+|++.++|.+|| .+|+..|.++ .|+|
T Consensus 46 ~~~lf--V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGf-aFV~F~~~e~A~~Al-~~~g~~l~gR---~i~V 117 (139)
T 2hgn_A 46 GHCVH--MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGE-ADVEFATHEEAVAAM-SKDRANMQHR---YIEL 117 (139)
T ss_dssp CCCEE--CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCC-CEEECSHHHHHHHHT-TCCSCSSSSC---CCCC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceE-EEEEeCCHHHHHHHH-hhCCCEECCE---EEEE
Confidence 44555 999999999999999999999 778887643 2577 999999999999999 7899999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
.++...+
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876544
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=1.4e-12 Score=104.26 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=65.1
Q ss_pred ecccccccCC--CCCCCC-------HHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCC
Q 019429 4 ICRPLSRKYL--QWQLSA-------SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 74 (341)
Q Consensus 4 ~~r~~~~~NL--p~~~t~-------e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~ 74 (341)
..|.|-++|+ +.+..+ ++||++.|++||+|.+|.+.+...+++|||+|.+.++|.+|++.|||+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f----- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF----- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE-----
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE-----
Confidence 4566778888 443222 46899999999999999998755456799999999999999999999985
Q ss_pred CCCCCCceEEEEeccCC
Q 019429 75 PENMGPCTLRITYSAHT 91 (341)
Q Consensus 75 ~~~~~g~~i~v~~s~~~ 91 (341)
.||.|+|+|+...
T Consensus 81 ----~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 ----AGKMITAAYVPLP 93 (114)
T ss_dssp ----TTEECEEEEECHH
T ss_pred ----CCEEEEEEEEcHH
Confidence 6999999998744
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=5e-13 Score=108.33 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=66.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcc
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 207 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~ 207 (341)
..+|+ |+|||+.+|+++|+++|+.||.| ..|+|..+. +|+ |||+|.+.++|.+|++. |+..|.++
T Consensus 23 ~~~v~--V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~-aFV~F~~~~~A~~Al~~-~~~~l~gR--- 95 (123)
T 2dha_A 23 QVIVR--MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGD-AFVLFACEEYAQNALRK-HKDLLGKR--- 95 (123)
T ss_dssp CCEEE--ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEE-EEECCSSHHHHHHHHTT-TTEESSSC---
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHHh-CCCeeCCe---
Confidence 45555 99999999999999999999986 578876432 466 99999999999999996 99999998
Q ss_pred eEEEEeecCCCCc
Q 019429 208 KLHISYSRHTDLS 220 (341)
Q Consensus 208 ~l~v~~s~~~~~~ 220 (341)
.|+|..+..++..
T Consensus 96 ~i~V~~a~~~e~~ 108 (123)
T 2dha_A 96 YIELFRSTAAEVQ 108 (123)
T ss_dssp EECCEEECHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 9999998766543
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=101.17 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCC
Q 019429 148 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 148 ~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~ 218 (341)
..+|+++|+++|++||+|++|.|..+.+|+ |||+|++.++|.+|++.+++ +.++ +|+|+|++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGf-aFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGT-AVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSE-EEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCE-EEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence 468999999999999999999998777887 99999999999999998655 5677 99999987654
No 361
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=7.9e-13 Score=124.96 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=64.4
Q ss_pred ecccccccC--CCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 4 ICRPLSRKY--LQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 4 ~~r~~~~~N--Lp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
..+.|+|.| |++++++ ++|+++|++||+|.+|++.+ +++||||+|.+.|+|++||+.|||+++. . ..|+
T Consensus 17 ps~~l~VgN~gl~~~~te-~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~----~--~~g~ 87 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSR-NQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV----D--DLGQ 87 (345)
T ss_dssp CCSEEEEETCSGGGTCCH-HHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE----C--TTSC
T ss_pred CCCEEEEEcCCCCCCCCH-HHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc----c--ccCC
Confidence 358999999 5788777 79999999999999998765 4568999999999999999999999972 1 2234
Q ss_pred --eEEEEecc
Q 019429 82 --TLRITYSA 89 (341)
Q Consensus 82 --~i~v~~s~ 89 (341)
+|++.|.+
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 78899875
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.5e-12 Score=100.51 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc--------CCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcc
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 207 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~--------~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~ 207 (341)
++.|+ |+||+..+|+++|+++|++||.|. +++.. +.+|+ |||+|++.++|.+|++.|+ .+.|+
T Consensus 8 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~-aFV~f~~~~~a~~Ai~~~~--~~~G~--- 78 (114)
T 2dnl_A 8 SRKVF--VGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGY-AFLLFQEESSVQALIDACL--EEDGK--- 78 (114)
T ss_dssp CCCEE--EECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSE-EEECCSSHHHHHHHHHHSE--EETTE---
T ss_pred CCEEE--EcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccE-EEEEECCHHHHHHHHHhhh--hcCCc---
Confidence 55666 999999999999999999999999 66543 23676 9999999999999999994 36666
Q ss_pred eEEEEeec
Q 019429 208 KLHISYSR 215 (341)
Q Consensus 208 ~l~v~~s~ 215 (341)
.|.+..+.
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 67666554
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.31 E-value=3.5e-12 Score=102.56 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=65.3
Q ss_pred CCcEEEEEeecCCC--CC---CHHHHHHHHcccCCeeEEEEEcCC---------CCeEEEEEcCChhHHHHHHHHhcCce
Q 019429 135 ESNVLLASIENMQY--AV---TLDVLHMVFSAFGPVQKIAMFDKN---------GGLQALIQYPDVQTAVVAKEALEGHC 200 (341)
Q Consensus 135 ~s~vl~v~v~nl~~--~v---t~~~L~~~F~~fG~v~~v~i~~~~---------~g~~afV~F~~~~~A~~Ai~~l~g~~ 200 (341)
++++|+ +.|+-. .+ -+++|+++|++||+|++|+|.... +|+ +||+|.+.++|.+|++.|||..
T Consensus 19 ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~-~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE-EEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE-EEEEECCHHHHHHHHHHHCCCE
Confidence 578888 788732 22 268899999999999999987542 266 9999999999999999999999
Q ss_pred eCCCCcceEEEEeecCCC
Q 019429 201 IYDGGFCKLHISYSRHTD 218 (341)
Q Consensus 201 i~~~~~~~l~v~~s~~~~ 218 (341)
+.|+ .|+|+|+....
T Consensus 96 f~GR---~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGR---KVVAEVYDQER 110 (118)
T ss_dssp ETTE---ECEEEEECHHH
T ss_pred ECCc---EEEEEEcChHh
Confidence 9999 99999986644
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=7.3e-12 Score=100.03 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=66.0
Q ss_pred CCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChhHHHHHHHHhcCceeCC
Q 019429 135 ESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYD 203 (341)
Q Consensus 135 ~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~Ai~~l~g~~i~~ 203 (341)
++++|. +.|+-..-. +++|+++|++||.|++|+|.+.. +|+ |||+|.+.++|.+|++.|||..+.|
T Consensus 6 ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~-~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGN-VYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCC-EEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 477777 777732221 35789999999999999987653 687 9999999999999999999999999
Q ss_pred CCcceEEEEeecCCCCc
Q 019429 204 GGFCKLHISYSRHTDLS 220 (341)
Q Consensus 204 ~~~~~l~v~~s~~~~~~ 220 (341)
+ .|+|+|+......
T Consensus 83 R---~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 K---MITAAYVPLPTYH 96 (114)
T ss_dssp E---ECEEEEECHHHHH
T ss_pred E---EEEEEEEcHHHHH
Confidence 9 9999999766543
No 365
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.31 E-value=1.2e-12 Score=106.57 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=64.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCee--EEEEEcC----CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 209 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--~v~i~~~----~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l 209 (341)
..+|+ |+|||+.+|+++|+++|+.| .|+ +|+|..+ .+|+ |||+|++.++|.+|++. ++..|.++ .|
T Consensus 42 ~~~lf--VgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf-aFV~F~~~e~A~~Al~~-~~~~l~gR---~I 113 (126)
T 2hgm_A 42 DGFVR--LRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE-AFVQFASQELAEKALGK-HKERIGHR---YI 113 (126)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSE-EEEEESSTTHHHHHHTT-TTCCBTTB---CC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceE-EEEEECCHHHHHHHHHH-CCCEECCE---EE
Confidence 45555 99999999999999999999 677 7887643 3577 99999999999999985 78999998 99
Q ss_pred EEEeecCCCC
Q 019429 210 HISYSRHTDL 219 (341)
Q Consensus 210 ~v~~s~~~~~ 219 (341)
+|..+..+++
T Consensus 114 ~V~~a~~~e~ 123 (126)
T 2hgm_A 114 EVFKSSQEEV 123 (126)
T ss_dssp CCEEECHHHH
T ss_pred EEEECCHHHh
Confidence 9998865543
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=3.8e-12 Score=120.27 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCCcEEEEEeec--CCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCC-C-cceE
Q 019429 134 PESNVLLASIEN--MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKL 209 (341)
Q Consensus 134 ~~s~vl~v~v~n--l~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~-~-~~~l 209 (341)
.++++|+ |+| |+..+|+++|+++|++||+|++|++.+ ++|| |||+|++.++|.+|++.|||.++.+. | ...|
T Consensus 16 ~ps~~l~--VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLV--VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEE--EETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSE-EEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEE--EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 4577888 666 688999999999999999999998876 4577 99999999999999999999999422 0 2268
Q ss_pred EEEeec
Q 019429 210 HISYSR 215 (341)
Q Consensus 210 ~v~~s~ 215 (341)
.|.|++
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 889985
No 367
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=1.3e-11 Score=112.34 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=68.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeec
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 215 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~ 215 (341)
+++|+ |+|||..+|+++|+++|+.||.|.+|.+.+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|+.
T Consensus 22 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~-afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~a~ 94 (261)
T 3sde_A 22 RCRLF--VGNLPTDITEEDFKRLFERYGEPSEVFINRD-RGF-GFIRLESRTLAEIAKAELDGTILKSR---PLRIRFAT 94 (261)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcE-EEEEECCHHHHHHHHHHcCCcEECCc---eeEeeecc
Confidence 55666 9999999999999999999999999999765 465 99999999999999999999999998 99999997
Q ss_pred CC
Q 019429 216 HT 217 (341)
Q Consensus 216 ~~ 217 (341)
..
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.28 E-value=5e-12 Score=102.08 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=61.8
Q ss_pred EEeecC----CCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCC----hhH----HHHHHH--HhcCcee
Q 019429 141 ASIENM----QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPD----VQT----AVVAKE--ALEGHCI 201 (341)
Q Consensus 141 v~v~nl----~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~----~~~----A~~Ai~--~l~g~~i 201 (341)
|+|+|| ++.+++++|+++|+.||+|.+++++.+. +|| |||+|.| .++ |.+|++ .|||..|
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf-gfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV-YLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE-EEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE-EEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 459999 9999999999999999999999987543 567 9999996 433 889988 7899999
Q ss_pred CCCCcceEEEEeecCC
Q 019429 202 YDGGFCKLHISYSRHT 217 (341)
Q Consensus 202 ~~~~~~~l~v~~s~~~ 217 (341)
.|+ .|+|.+-+..
T Consensus 84 ~Gr---~irV~ln~~g 96 (136)
T 2j8a_A 84 MGF---KFEVILNKHS 96 (136)
T ss_dssp TTE---EEEEEECCTT
T ss_pred cCc---EEEEEECccc
Confidence 999 9999986543
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=5.1e-12 Score=99.29 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHh-hccCcceEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEec
Q 019429 21 GERAHVF-SAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 88 (341)
Q Consensus 21 ~~L~~lF-~~fG~V~~v~i~~~---~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s 88 (341)
++|++.| ++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||+.+ .|++|+|+|+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---------~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---------NGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---------CCEEEEEEEc
Confidence 3455555 99999999998873 2456899999999999999999999985 6999999986
No 370
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.9e-12 Score=104.56 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=62.3
Q ss_pred ccccccCC----CCCCCCHHHHHHHhhccCcceEEEEee----ecCCceEEEEeCC----HHH----HHHHHH--HhcCC
Q 019429 6 RPLSRKYL----QWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSD----TET----ASSAKN--ALDGR 67 (341)
Q Consensus 6 r~~~~~NL----p~~~t~e~~L~~lF~~fG~V~~v~i~~----~~~g~~aFVeF~~----~e~----A~~Ai~--~lng~ 67 (341)
..|+|.|| ||.+++ ++|+++|+.||+|.++.++. +.++++|||+|.| .++ |.+|++ .|||.
T Consensus 3 ~kI~VgnL~~~~~~~tte-~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD-ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCH-HHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCH-HHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 35899999 999998 79999999999999997776 3446689999996 333 889998 78999
Q ss_pred CcCCcCCCCCCCCceEEEEeccCC
Q 019429 68 SIPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 68 ~i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
.| .|++|+|.+-...
T Consensus 82 ~I---------~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FI---------MGFKFEVILNKHS 96 (136)
T ss_dssp EE---------TTEEEEEEECCTT
T ss_pred ee---------cCcEEEEEECccc
Confidence 85 6999999986643
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=1.6e-12 Score=102.18 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=57.1
Q ss_pred ecCCCCCCHHHHHHHH------------cccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcc
Q 019429 144 ENMQYAVTLDVLHMVF------------SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 207 (341)
Q Consensus 144 ~nl~~~vt~~~L~~~F------------~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~ 207 (341)
.+|+..+|+++|++.| ++||+|++|+|.... +|+ |||+|.+.++|.+|++.|||..+.|+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~-~fV~f~~~~~A~~A~~~lng~~~~Gr--- 96 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ--- 96 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE---
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEE-EEEEECCHHHHHHHHHHHCCCEECCE---
Confidence 4555566777666655 999999999997643 576 99999999999999999999999999
Q ss_pred eEEEEee
Q 019429 208 KLHISYS 214 (341)
Q Consensus 208 ~l~v~~s 214 (341)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.21 E-value=1.6e-11 Score=107.08 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=63.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+++|+ |+|||..+|+++|+++|+.||.|..|+|.... +|+ |||+|++.++|.+|++.++ ..+.|+ .|+|
T Consensus 109 ~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~-aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V 181 (193)
T 2voo_A 109 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVETPG-QKYKET---DLLI 181 (193)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESSHHHHHHHHHCTT-CEETTE---ECEE
T ss_pred cCEEE--ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHhCC-CeECCE---EEEE
Confidence 35555 99999999999999999999999999987532 466 9999999999999998665 589998 9999
Q ss_pred EeecC
Q 019429 212 SYSRH 216 (341)
Q Consensus 212 ~~s~~ 216 (341)
.+++.
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 98654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.1e-10 Score=85.83 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCCcEEEEEeecC-C-CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcc
Q 019429 134 PESNVLLASIENM-Q-YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 207 (341)
Q Consensus 134 ~~s~vl~v~v~nl-~-~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~ 207 (341)
|+..+++|.+.+- + .+.-+ .+|.+.|+.||+|..+++...+ +||+|.+.++|.+|++ |||.++.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr--- 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR--- 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE---
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe---
Confidence 4466677777542 1 23333 5789999999999999998743 9999999999999998 999999999
Q ss_pred eEEEEeecCC
Q 019429 208 KLHISYSRHT 217 (341)
Q Consensus 208 ~l~v~~s~~~ 217 (341)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999986543
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.8e-09 Score=86.60 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=63.8
Q ss_pred CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCC-hhHHHHHHHHhc--CceeCCCCcceE
Q 019429 134 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFCKL 209 (341)
Q Consensus 134 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~-~~~A~~Ai~~l~--g~~i~~~~~~~l 209 (341)
+.+.+|+ |.|++.. +|+++|+++|+.||+|..|.+..... .|||+|.+ .++|..|+++|| |..|.+. .+
T Consensus 16 ~~G~il~--v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~ 88 (121)
T 1owx_A 16 KIGCLLK--FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK---EV 88 (121)
T ss_dssp CCCCEEE--EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred cCCeEEE--EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence 3466666 8999999 99999999999999999999987665 59999999 899999999995 7777777 77
Q ss_pred EEEeec
Q 019429 210 HISYSR 215 (341)
Q Consensus 210 ~v~~s~ 215 (341)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776653
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=82.19 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=50.4
Q ss_pred HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccCC
Q 019429 21 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 91 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~~ 91 (341)
.+|.+.|++||+|..|++... .+||+|.+.++|.+||+ |||.++ .||.|+|++++..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v---------~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKEL---------LNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEE---------TTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEe---------CCeEEEEEeCCCC
Confidence 478999999999999998862 29999999999999998 999995 7999999987643
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.5e-09 Score=81.32 Aligned_cols=72 Identities=13% Similarity=0.253 Sum_probs=57.9
Q ss_pred CCCcEEEEEeecCC---CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCc
Q 019429 134 PESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 206 (341)
Q Consensus 134 ~~s~vl~v~v~nl~---~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~ 206 (341)
|+..+++|.+.+-. .++-+ .+|.+.|+.||+|+.|++...+ +||+|.+.++|.+||+ |||.+|.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr-- 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR-- 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE--
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe--
Confidence 45667776664321 12222 4688999999999999988643 9999999999999998 999999999
Q ss_pred ceEEEEe
Q 019429 207 CKLHISY 213 (341)
Q Consensus 207 ~~l~v~~ 213 (341)
.|+|++
T Consensus 86 -~L~V~~ 91 (95)
T 1ufw_A 86 -AVKISG 91 (95)
T ss_dssp -EEEEEC
T ss_pred -EEEEec
Confidence 999996
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=4.3e-09 Score=84.41 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=60.5
Q ss_pred ccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCC-HHHHHHHHHHhcCCCcCCcCCCCCCCCceEE
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSD-TETASSAKNALDGRSIPRYLLPENMGPCTLR 84 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~-~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~ 84 (341)
.-|+|+||+++.+++++|+++|+.||+|..|.+.+... .|||+|.+ .++|..|++.||.-.+- +.+..++
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~-------i~g~~~~ 89 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQ-------LRNKEVT 89 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBC-------TTSSSEE
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcE-------EeCcEEE
Confidence 45899999999445689999999999999999877432 49999999 89999999999643332 5678788
Q ss_pred EEecc
Q 019429 85 ITYSA 89 (341)
Q Consensus 85 v~~s~ 89 (341)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77654
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=2.1e-08 Score=77.75 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=64.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc-----CCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~f-----G~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
.+++. +.|+|.+|++..++.+.+.+ |.|++|.+.++.. -|+|+|.|...|.+|..+|||.+|.|+ +|+
T Consensus 21 ~rtia--L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr---~Lr 93 (117)
T 2l9w_A 21 ETLIC--LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGK---VIR 93 (117)
T ss_dssp TSCEE--EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTE---EEE
T ss_pred CcEEE--EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCe---EEE
Confidence 34455 88999999999999999999 9999999998876 399999999999999999999999998 999
Q ss_pred EEe
Q 019429 211 ISY 213 (341)
Q Consensus 211 v~~ 213 (341)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 873
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.3e-08 Score=90.16 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=55.4
Q ss_pred CHHHHHHHhhccCcceEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEeccC
Q 019429 19 ASGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 90 (341)
Q Consensus 19 ~e~~L~~lF~~fG~V~~v~i~~~--------~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s~~ 90 (341)
.+++|++.|++||+|.+|.+.+. ..++++||+|.+.++|.+|++.|||+.+ .||+|++.|+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---------~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---------CCeEEEEEEcCH
Confidence 35799999999999999988752 2346799999999999999999999984 799999999874
Q ss_pred C
Q 019429 91 T 91 (341)
Q Consensus 91 ~ 91 (341)
.
T Consensus 213 ~ 213 (222)
T 3dxb_A 213 E 213 (222)
T ss_dssp H
T ss_pred H
Confidence 4
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=8.7e-09 Score=78.32 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=48.0
Q ss_pred HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCceEEEEec
Q 019429 21 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 88 (341)
Q Consensus 21 ~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~i~v~~s 88 (341)
.+|.+.|+.||+|..|++... .+||+|.+.++|.+||+ |||.+| .||.|+|++.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v---------~Gr~L~V~~k 92 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKV---------KGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEE---------TTEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeee---------CCeEEEEecc
Confidence 368899999999999988863 29999999999999998 999995 7999999864
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=3.4e-08 Score=87.42 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcC---------CCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEeecCCCC
Q 019429 150 VTLDVLHMVFSAFGPVQKIAMFDK---------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 219 (341)
Q Consensus 150 vt~~~L~~~F~~fG~v~~v~i~~~---------~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~s~~~~~ 219 (341)
-.+++|++.|++||+|.+|+|.+. .+|+ +||+|.+.++|.+|++.|||..+.|+ .|+++|+...+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~-~fv~f~~~~~a~~a~~~l~gr~~~gr---~i~~~~~~~~~f 215 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRWFAGR---KVVAEVYDQERF 215 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEECCHHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeE-EEEEECCHHHHHHHHHHhcCceECCe---EEEEEEcCHHHh
Confidence 346789999999999999998632 2366 99999999999999999999999999 999999865543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=5.5e-07 Score=69.84 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=62.9
Q ss_pred cccccccCCCCCCCCHHHHHHHhhcc-----CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCC
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAF-----GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 79 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~f-----G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 79 (341)
.|+|.+=|||-.+++ +.++.|.+++ |.|++|++.... ++ |+|+|.|...|-+|.-.|||.+| .
T Consensus 21 ~rtiaL~~ipDtvnd-arIr~lve~~~~i~~g~i~KI~L~pDH-~G-Aivef~d~~~AgKasLaL~G~ef---------~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSP-SLICQFLQEEIHINEKDIRKILLVSDF-NG-AIIIFRDSKFAAKMLMILNGSQF---------Q 88 (117)
T ss_dssp TSCEEEECCCTTCCH-HHHHHHHHHHTCCCTTTCSEEEEETTT-TE-EEEECSCHHHHHHHHHHHSSEEE---------T
T ss_pred CcEEEEecCCCCCCH-HHHHHHHhhhhccCccceeEEEEecCC-Cc-eEEEEccchhhHHHHhhcCCeee---------c
Confidence 578888999988887 7899999999 999999987754 34 99999999999999999999996 5
Q ss_pred CceEEEEe
Q 019429 80 PCTLRITY 87 (341)
Q Consensus 80 g~~i~v~~ 87 (341)
|++|+|.-
T Consensus 89 gr~Lr~gT 96 (117)
T 2l9w_A 89 GKVIRSGT 96 (117)
T ss_dssp TEEEEEEC
T ss_pred CeEEEecC
Confidence 99999973
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=3.9e-05 Score=59.15 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=63.2
Q ss_pred cEEEEEeecCCCCC-CH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEE
Q 019429 137 NVLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 211 (341)
Q Consensus 137 ~vl~v~v~nl~~~v-t~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v 211 (341)
+.|+ |.|++..| +. +.++++|..|+++.....++.=+ ..-|.|.+.++|.+|...||+..+.|+ .|+|
T Consensus 6 ntLi--itnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~ 78 (104)
T 1wey_A 6 SGLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKL 78 (104)
T ss_dssp CEEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEE
T ss_pred ceEE--EecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEE
Confidence 3466 77887655 32 56789999999999988887665 589999999999999999999999999 9999
Q ss_pred EeecCCC
Q 019429 212 SYSRHTD 218 (341)
Q Consensus 212 ~~s~~~~ 218 (341)
-|+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997443
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=6.8e-05 Score=57.79 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=61.6
Q ss_pred cccccCCCCCCCCH----HHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCce
Q 019429 7 PLSRKYLQWQLSAS----GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 82 (341)
Q Consensus 7 ~~~~~NLp~~~t~e----~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~~ 82 (341)
+|.|-||+.++=+. +.++++|..|+++.....++. -+ ..-|.|.+.|+|.+|...||+..+ .|+.
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-FR-Rirv~F~~~~~A~~AR~~Lh~~~f---------~g~~ 75 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-FK-RVRINFSNPLSAADARLRLHKTEF---------LGKE 75 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-TT-EEEEECSSTTHHHHHHHTSTTSEE---------TTEE
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-ce-EEEEEeCChHHHHHHHHHhcccee---------cCce
Confidence 57788998765332 467899999999999888873 22 399999999999999999999985 6999
Q ss_pred EEEEeccCCc
Q 019429 83 LRITYSAHTD 92 (341)
Q Consensus 83 i~v~~s~~~~ 92 (341)
|+|-|++..+
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 9999998543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.0022 Score=49.22 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcc-----cCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEE
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSA-----FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 210 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~-----fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~ 210 (341)
..++. |.|+|..+++|.|.-+|+. =|+|..|..+. . .|+|+|.+.+.|.+.++. ..+.|.+. .|.
T Consensus 8 ~~~I~--V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls 77 (104)
T 2dhx_A 8 GVAVE--VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHGA---QLS 77 (104)
T ss_dssp CCEEE--EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred ccEEE--EECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence 34455 9999999999999999988 36899998877 2 599999999999998864 25667776 777
Q ss_pred EEe
Q 019429 211 ISY 213 (341)
Q Consensus 211 v~~ 213 (341)
|.-
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 753
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0015 Score=51.62 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=51.3
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 140 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 140 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
.|+|.+.+... .+.+.+.|++||+|++..... ...+ -.|.|+++.+|++||.. ||..|.+. +.|-|..
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~NW-ihI~Y~s~~~A~rAL~k-NG~ii~g~--~mIGV~p 93 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGNW-MHIRYQSKLQARKALSK-DGRIFGES--IMIGVKP 93 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSSE-EEEEESSHHHHHHHHTT-TTCEETTT--EECEEEE
T ss_pred EEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCCe-EEEEeCCHHHHHHHHHh-CCeEecCC--EEEEEEE
Confidence 46688887664 667778899999999988732 3334 89999999999999975 99888764 2444443
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.97 E-value=0.00029 Score=68.64 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=43.0
Q ss_pred cccccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019429 5 CRPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 62 (341)
Q Consensus 5 ~r~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~ 62 (341)
||+++|. .+.+.++ ++|.+.|++||.|.++.+.+ ..|-||.|||.+.++|.++++
T Consensus 53 ~rsv~v~-~~~~~~~-~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISE-NKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC----CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCH-HHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHh
Confidence 7999997 7888777 79999999999999999886 456789999999999997764
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.94 E-value=0.0029 Score=47.95 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=44.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhc
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 197 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~ 197 (341)
.+|+. + +.|.++...||.++|+.||.|. |+-.++. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~--l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLH--V-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEE--E-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEE--E-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45555 5 8999999999999999999654 3333332 59999999999999999875
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.86 E-value=0.0012 Score=50.10 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=42.4
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 65 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~ln 65 (341)
.|++ .+|.+..+ .||.++|+.||-|. |.-+. .. .|||.|.+.+.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt-~DI~~lFs~fggv~-I~Wid--DT-sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKT-SDLYQLFSAFGNIQ-ISWID--DT-SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCH-HHHHHHHTTTCSCC-CEEEE--TT-EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhh-HHHHHHhhccCCEE-EEEEc--CC-eEEEEecCHHHHHHHHHhcc
Confidence 4666 89999999 79999999999654 32222 23 59999999999999999875
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0022 Score=49.21 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=51.3
Q ss_pred ccccccCCCCCCCCHHHHHHHhhc----c-CcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCC
Q 019429 6 RPLSRKYLQWQLSASGERAHVFSA----F-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 80 (341)
Q Consensus 6 r~~~~~NLp~~~t~e~~L~~lF~~----f-G~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g 80 (341)
+.|.|+|||.++.+ +.|.-.|+. - |+|.+|.... . .|+|+|.+.+.|++.++. .... +.+
T Consensus 9 ~~I~V~~lPp~~~~-e~L~LYFEn~rrsGGG~V~~v~~~~---~-~AvItF~d~~va~rVL~k-~~H~---------L~~ 73 (104)
T 2dhx_A 9 VAVEVRGLPPAVPD-ELLTLYFENRRRSGGGPVLSWQRLG---C-GGVLTFREPADAERVLAQ-ADHE---------LHG 73 (104)
T ss_dssp CEEEEESCCTTSCH-HHHHHHHHCTTTTCCCCEEEEEEET---T-EEEEEESSHHHHHHHHTC-SCCB---------SSS
T ss_pred cEEEEECCCCCCCh-hHheEEEeCCCcCCCceeeEEEEcC---C-cEEEEEcChHHHHHHhcC-Ccce---------ecC
Confidence 57889999998876 799999998 2 6899998765 2 499999999999998862 0122 456
Q ss_pred ceEEEEe
Q 019429 81 CTLRITY 87 (341)
Q Consensus 81 ~~i~v~~ 87 (341)
..|.|.-
T Consensus 74 ~~LsV~P 80 (104)
T 2dhx_A 74 AQLSLRP 80 (104)
T ss_dssp SBCEEEE
T ss_pred eEEEEEc
Confidence 6677753
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.0044 Score=47.15 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred cCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCce
Q 019429 145 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 200 (341)
Q Consensus 145 nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~ 200 (341)
+.|.++...+|.++|+.||.| .|.-.++. .|||.|.+++.|..|+..+....
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHTTCS
T ss_pred eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcccCC
Confidence 899999999999999999944 33434432 59999999999999999886443
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0016 Score=49.53 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=42.6
Q ss_pred cccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019429 7 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 66 (341)
Q Consensus 7 ~~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng 66 (341)
.|++ .+|.+..+ .||.++|+.||-|. |.-+. .. .|||.|.+.+.|..|+..++-
T Consensus 8 V~~l-~FP~ewKt-~Di~~lFs~fggv~-I~Wid--DT-sAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 8 VLHV-TFPKEWKT-SDLYQLFSAFGNIQ-ISWID--DT-SAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEE-ECCTTCCH-HHHHHHTTTSEEEE-EEEEE--TT-EEEEEEEEECHHHHHHHHHTT
T ss_pred EEEE-eCChhhhh-HHHHHHHhccCCEE-EEEEc--CC-eEEEEecCHHHHHHHHHhccc
Confidence 4666 89999999 79999999999443 32222 33 599999999999999998763
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.28 E-value=0.017 Score=43.41 Aligned_cols=75 Identities=12% Similarity=0.250 Sum_probs=56.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC------CCeEEEEEcCChhHHHHHHHHhcCceeCCC-C-cceEEEE
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHIS 212 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~-~-~~~l~v~ 212 (341)
|-|.+||+++|++++.+.++...++.-......+ .-..|+|.|.+.+++..-.+.++|+.+.+. | ..+-.|+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE 83 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVE 83 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEE
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEE
Confidence 3489999999999999999999887666554433 112499999999999999999999988654 1 2233455
Q ss_pred eec
Q 019429 213 YSR 215 (341)
Q Consensus 213 ~s~ 215 (341)
||-
T Consensus 84 ~AP 86 (91)
T 1uw4_A 84 FAP 86 (91)
T ss_dssp ECS
T ss_pred EcC
Confidence 553
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.23 E-value=0.0029 Score=61.70 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=38.9
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHH
Q 019429 137 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 194 (341)
Q Consensus 137 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~ 194 (341)
+.++|. .+..+++++|.+.|++||.|.++.+.+.+ |.+|.|||++.+++..++.
T Consensus 54 rsv~v~---~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH---CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE---ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE---cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 445643 46789999999999999999999888755 6679999999999997754
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.33 E-value=0.046 Score=43.07 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 20 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 20 e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
.+.+.+.|++||+|++.... ..+..-.|.|.+..+|++|+. .||+.|
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii 83 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALS-KDGRIF 83 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred HHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence 35788899999999998863 355679999999999999996 688775
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.00 E-value=0.014 Score=46.67 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=48.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEE-EEc------------C------CCCeEEEEEcCChhHHHHHHHHhcCcee
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD------------K------NGGLQALIQYPDVQTAVVAKEALEGHCI 201 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~------------~------~~g~~afV~F~~~~~A~~Ai~~l~g~~i 201 (341)
|+|.+.|... ...+.+.|++||.|++-. ..+ + ..++ ..|.|++..+|.+|+. -||..|
T Consensus 10 VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NW-ikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 10 ILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSW-TKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTE-EEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcE-EEEEcCCHHHHHHHHH-hCCeEe
Confidence 5577776554 455667799999998722 111 0 1223 7899999999999997 599888
Q ss_pred CCCCcceEEEEeecC
Q 019429 202 YDGGFCKLHISYSRH 216 (341)
Q Consensus 202 ~~~~~~~l~v~~s~~ 216 (341)
.|. -|=|..-++
T Consensus 87 ~G~---mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGV---LLGVIPYTK 98 (132)
T ss_dssp TTE---ECEEEECCH
T ss_pred CcE---EEEEEECCH
Confidence 764 777766543
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.69 E-value=0.046 Score=41.02 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=48.2
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeec------CCceEEEEeCCHHHHHHHHHHhcCCCc
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI 69 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~------~g~~aFVeF~~~e~A~~Ai~~lng~~i 69 (341)
+-||+||...|+ +++++..+...++.-....+++ .-..|+|.|.+.|++..-.+.++|..+
T Consensus 4 vVIRrLPP~Lte-eeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 4 VVIRRLPPTLTK-EQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEECTTCCH-HHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCCCH-HHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 468999999999 6788888888876655544421 112399999999999999999999876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.97 E-value=0.13 Score=39.01 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=52.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC------CCeEEEEEcCChhHHHHHHHHhcCceeCCC-C-cceEEEE
Q 019429 141 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHIS 212 (341)
Q Consensus 141 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~-~-~~~l~v~ 212 (341)
|.|..||+++|++++.+.++..=++.-......+ .-..|+|.|.+.++...-.+..+|+.+.+. | .-+-.|+
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE 91 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVE 91 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEE
Confidence 4499999999999999888876554322222211 001399999999999999999999988654 1 2355566
Q ss_pred eec
Q 019429 213 YSR 215 (341)
Q Consensus 213 ~s~ 215 (341)
||.
T Consensus 92 ~AP 94 (97)
T 2l08_A 92 FAP 94 (97)
T ss_dssp ECC
T ss_pred ecC
Confidence 653
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.95 E-value=0.2 Score=40.02 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHHhhccCcceEEE-Eee-------------e----cCCceEEEEeCCHHHHHHHHHHhcCCCcCCcCCCCCCCCc
Q 019429 20 SGERAHVFSAFGFVHKIT-TFE-------------K----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 81 (341)
Q Consensus 20 e~~L~~lF~~fG~V~~v~-i~~-------------~----~~g~~aFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~g~ 81 (341)
+..+.+.|++||.|.+-. ..+ + ..+..--|+|.+..+|.+|+. -||+.| .|.
T Consensus 20 ~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii---------~G~ 89 (132)
T 3p3d_A 20 ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF---------NGV 89 (132)
T ss_dssp HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE---------TTE
T ss_pred HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe---------CcE
Confidence 357888999999998731 111 0 124457899999999999995 788875 566
Q ss_pred eEEEEecc
Q 019429 82 TLRITYSA 89 (341)
Q Consensus 82 ~i~v~~s~ 89 (341)
-|-|....
T Consensus 90 mIGV~Py~ 97 (132)
T 3p3d_A 90 LLGVIPYT 97 (132)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 66666554
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.08 E-value=1.5 Score=43.12 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=44.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCc
Q 019429 136 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 199 (341)
Q Consensus 136 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~ 199 (341)
..+++ +. .+..+...+|.++|+.||.| .|+-+.+. +|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 44555 54 66788999999999999954 44444433 5999999999999999998643
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=83.66 E-value=0.79 Score=34.60 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=40.9
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEee---e-----c-CCceEEEEeCCHHHHHHHHHHhcCCCcC
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFE---K-----T-AGFQALVQFSDTETASSAKNALDGRSIP 70 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~---~-----~-~g~~aFVeF~~~e~A~~Ai~~lng~~i~ 70 (341)
|-||.||...|+ +++.+.++. ..++..+. + . .-..|+|.|.+.|+...-.+.++|..+-
T Consensus 12 vVIRrLPP~Lte-e~F~~~l~~---~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 12 VVIRRLPPGLTK-EQLEEQLRP---LPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp EEEECCCSCSCH-HHHTTTTSC---CSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred EEEeCCCCCCCH-HHHHHHhCC---cCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 568999999999 455544444 33332222 1 1 1123999999999999999999998763
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.41 E-value=2.8 Score=41.19 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019429 13 LQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 67 (341)
Q Consensus 13 Lp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~ 67 (341)
+|....+ .+|.++|+.||.| +|..+. . ..|||.|.+.|.|..+++.++..
T Consensus 447 f~~~~~~-~~i~~~fs~fg~v-~V~wid--d-t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 447 FPKEWKT-SDLYQLFSAFGNI-QISWID--D-TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp CCTTCCH-HHHHHHGGGGCCC-EEEECS--S-SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CCCCCCH-HHHHHHHHhcCCE-EEEEEc--C-CeEEEEECCHHHHHHHHHHHHhC
Confidence 5555555 7999999999964 444443 2 35999999999999999998743
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.08 E-value=40 Score=24.76 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred ccccCCCCCCCCHHHHHHHhhccCcceEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019429 8 LSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 67 (341)
Q Consensus 8 ~~~~NLp~~~t~e~~L~~lF~~fG~V~~v~i~~~~~g~~aFVeF~~~e~A~~Ai~~lng~ 67 (341)
+.|-|+|..+-. .++-......|--.-+..+. ++|.|.|.+.++...|+..|-+.
T Consensus 15 ikiinipqgtlk-aevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 15 IKIINIPQGTLK-AEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp EEEECCCTTCCH-HHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEET
T ss_pred EEEEecCCCcee-eeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHhc
Confidence 567789988777 56666677777655555443 47999999999999999987653
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.25 E-value=36 Score=23.52 Aligned_cols=68 Identities=6% Similarity=0.067 Sum_probs=40.5
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccC-----CeeEEEEEcCCCCeEEEEEcCChhHHHHHHHHhcCceeCCCCcceEEEEe
Q 019429 139 LLASIENMQYAVTLDVLHMVFSAFG-----PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 213 (341)
Q Consensus 139 l~v~v~nl~~~vt~~~L~~~F~~fG-----~v~~v~i~~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~~~~~~~l~v~~ 213 (341)
|++.++.. ..++..+|...+..-+ .|-+|.++. . +.||+-... .|..+++.|++..+.++ .++|+.
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~-~s~v~v~~~-~~~~~~~~l~~~~i~g~---~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMD---N-ASYVEILNG-KGPHVLKVMKNTTVKGK---QLKVNK 73 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECS---S-CEEEEECTT-CHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeC---C-cEEEEECHH-HHHHHHHHhccccCcCc---eEEEEE
Confidence 45545544 3556566666665544 345566654 2 388887665 68889999999999998 888876
Q ss_pred ec
Q 019429 214 SR 215 (341)
Q Consensus 214 s~ 215 (341)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 405
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.11 E-value=1.7e+02 Score=21.10 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=35.5
Q ss_pred cCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChhHHHHHHH
Q 019429 145 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 194 (341)
Q Consensus 145 nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~Ai~ 194 (341)
..+...+..++++.++. |+ +|.+|......+|. -|+|....-.+|.....
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34558899999988876 66 78888765443332 59999998888776543
No 406
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=45 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=11.9
Q ss_pred CCeeEEEEEcCCCCeEEEEEcCCh
Q 019429 163 GPVQKIAMFDKNGGLQALIQYPDV 186 (341)
Q Consensus 163 G~v~~v~i~~~~~g~~afV~F~~~ 186 (341)
|+|++|. +.++ .+||+|+|-
T Consensus 28 GtV~kV~---~~~~-~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD---SARE-VCLVQFEDD 47 (68)
T ss_dssp EEEEEEE---TTTT-EEEEEETTT
T ss_pred eEEEEEe---cCCc-EEEEEEccC
Confidence 4555543 2234 499999875
No 407
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=27.00 E-value=20 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=30.0
Q ss_pred CHHHHHHHhhccCcceEEEEeeec-CCceEE----EEeCCHHHHHHHHHHhcC
Q 019429 19 ASGERAHVFSAFGFVHKITTFEKT-AGFQAL----VQFSDTETASSAKNALDG 66 (341)
Q Consensus 19 ~e~~L~~lF~~fG~V~~v~i~~~~-~g~~aF----VeF~~~e~A~~Ai~~lng 66 (341)
++++|..+..+.+ +..+.+.+.. +|.--| =.|.|.++|.+|++.|-.
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 4467777777776 4556666522 221222 268999999999987653
No 408
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=21.15 E-value=2.8e+02 Score=21.15 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHHHHHcccC-CeeEEEEE-cCCCCeEEEEEcCChhHHHHHHHHhcCceeC
Q 019429 152 LDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIY 202 (341)
Q Consensus 152 ~~~L~~~F~~fG-~v~~v~i~-~~~~g~~afV~F~~~~~A~~Ai~~l~g~~i~ 202 (341)
-.++.+++...| .|..+..+ ...+. ...|++++.+.|.+++.. .|+++.
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~-~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVA-NVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEE-EEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcE-EEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 344555555555 66665554 32222 366789999999888876 676654
No 409
>3uyx_A Hemagglutinin; influenza virus, subunit vaccine, viral; 1.80A {Influenza a virus} PDB: 3uyw_A 3mlh_A
Probab=20.45 E-value=56 Score=27.93 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=29.4
Q ss_pred eecccccccC--CCCCCCCHHHHHHHhhccCcceEEEEee
Q 019429 3 YICRPLSRKY--LQWQLSASGERAHVFSAFGFVHKITTFE 40 (341)
Q Consensus 3 ~~~r~~~~~N--Lp~~~t~e~~L~~lF~~fG~V~~v~i~~ 40 (341)
+..|+-.+.- .|.+..+.|+||++|+..+-+.++.++.
T Consensus 32 ivEr~~~~ng~CYPg~~~d~eeLR~llss~~s~er~eifp 71 (214)
T 3uyx_A 32 IVETPSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFP 71 (214)
T ss_dssp EECCCCTTTTCSSCCCBTTHHHHHHHTSSBSEEEEECSSC
T ss_pred EEECCCCCCCcCcCCccCCHHHHHHHHhccCCcceEEecc
Confidence 3445544432 3889999999999999999999988775
No 410
>4fqi_A Hemagglutinin HA1; neutralizing antibodies, antibody affinity, antigens, epitop glycosylation, hemagglutinin glycoproteins; HET: NAG; 1.71A {Influenza a virus} PDB: 2fk0_A* 3gbm_A* 3fku_A* 2ibx_A* 3s13_A* 3s12_A* 3s11_A*
Probab=20.12 E-value=37 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=31.3
Q ss_pred eecccccccCC--CCCCCCHHHHHHHhhccCcceEEEEeee
Q 019429 3 YICRPLSRKYL--QWQLSASGERAHVFSAFGFVHKITTFEK 41 (341)
Q Consensus 3 ~~~r~~~~~NL--p~~~t~e~~L~~lF~~fG~V~~v~i~~~ 41 (341)
+..|+-.+..+ |.+..+.|+||++|+..+.+.++.|+.+
T Consensus 83 IvEr~~~~ng~CYPG~~~d~eeLR~llss~~~~er~~ifp~ 123 (334)
T 4fqi_A 83 IVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPK 123 (334)
T ss_dssp EEECSSCSBSCSSCEEETTHHHHHHHHTTEEEEEEEESSCG
T ss_pred EEecCCCCCCcccCCccCCHHHHHHHHhccCceeeEEecCC
Confidence 34555556664 7788899999999999999999998764
Done!