Query 019431
Match_columns 341
No_of_seqs 175 out of 1830
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 6.2E-55 2.1E-59 418.0 21.3 246 60-341 6-251 (325)
2 1ksk_A Ribosomal small subunit 100.0 2.2E-46 7.6E-51 343.0 12.8 202 69-340 2-204 (234)
3 1vio_A Ribosomal small subunit 100.0 2.2E-45 7.6E-50 338.2 11.1 201 70-340 2-203 (243)
4 2i82_A Ribosomal large subunit 100.0 5.9E-43 2E-47 316.9 20.4 166 137-341 12-178 (217)
5 3dh3_A Ribosomal large subunit 100.0 5.3E-43 1.8E-47 329.3 12.7 201 68-340 4-204 (290)
6 1v9k_A Ribosomal large subunit 100.0 1E-40 3.6E-45 304.3 21.1 165 138-341 3-169 (228)
7 2oml_A Ribosomal large subunit 100.0 1.3E-38 4.4E-43 282.5 4.1 161 137-340 4-167 (189)
8 2olw_A Ribosomal large subunit 100.0 1.6E-37 5.6E-42 281.1 7.3 163 135-340 30-195 (217)
9 2gml_A Ribosomal large subunit 100.0 9.4E-32 3.2E-36 245.1 7.8 139 143-340 13-151 (237)
10 2k6p_A Uncharacterized protein 98.8 2.7E-10 9.4E-15 88.5 -0.1 75 71-146 1-83 (92)
11 1p9k_A ORF, hypothetical prote 98.8 1.1E-09 3.7E-14 82.8 0.8 55 68-123 18-73 (79)
12 2vqe_D 30S ribosomal protein S 98.7 4.4E-09 1.5E-13 93.8 3.5 80 70-162 98-180 (209)
13 1c05_A Ribosomal protein S4 de 98.7 8.3E-09 2.8E-13 88.3 4.6 80 70-161 50-129 (159)
14 1dm9_A Hypothetical 15.5 KD pr 98.7 2.8E-08 9.4E-13 82.5 7.5 56 67-123 5-60 (133)
15 2cqj_A BRMS2, U3 small nucleol 98.5 5E-08 1.7E-12 72.1 3.0 49 71-120 8-59 (71)
16 3r8n_D 30S ribosomal protein S 98.3 1.4E-07 4.9E-12 83.5 2.7 55 70-124 94-148 (205)
17 3hp7_A Hemolysin, putative; st 98.3 6.1E-07 2.1E-11 83.9 5.2 56 69-124 5-62 (291)
18 3bbn_D Ribosomal protein S4; s 98.3 4.1E-07 1.4E-11 80.3 3.5 55 70-124 88-142 (201)
19 3j20_D 30S ribosomal protein S 98.2 8.5E-07 2.9E-11 76.9 3.7 52 70-122 102-156 (180)
20 2xzm_D Ribosomal protein S4 co 98.1 1.9E-06 6.4E-11 75.0 4.0 50 70-120 106-156 (181)
21 3u5c_J 40S ribosomal protein S 97.9 4.7E-06 1.6E-10 73.0 2.9 51 70-121 106-159 (197)
22 3iz6_C 40S ribosomal protein S 97.5 1E-06 3.4E-11 77.1 -6.7 53 70-123 108-161 (195)
23 1k8w_A TRNA pseudouridine synt 97.0 0.00057 1.9E-08 64.4 5.3 70 144-256 25-94 (327)
24 1r3e_A TRNA pseudouridine synt 97.0 0.00045 1.5E-08 64.7 4.4 70 144-256 3-72 (309)
25 1sgv_A TRNA pseudouridine synt 96.9 0.00061 2.1E-08 63.9 4.4 71 143-256 5-75 (316)
26 3j20_E 30S ribosomal protein S 96.9 0.0018 6.3E-08 58.3 7.3 53 70-122 42-95 (243)
27 2aus_C Pseudouridine synthase; 96.9 0.00062 2.1E-08 64.6 4.4 72 142-256 44-115 (334)
28 2apo_A Probable tRNA pseudouri 96.8 0.00088 3E-08 64.0 4.1 72 142-256 64-135 (357)
29 3kbg_A 30S ribosomal protein S 96.5 0.0033 1.1E-07 55.5 5.6 51 70-120 7-58 (213)
30 3u28_A H/ACA ribonucleoprotein 96.5 0.0033 1.1E-07 60.7 6.1 75 142-259 57-132 (400)
31 3iz6_D 40S ribosomal protein S 95.2 0.02 6.8E-07 52.0 5.3 70 71-150 42-112 (265)
32 2xzm_W 40S ribosomal protein S 94.3 0.078 2.7E-06 48.0 6.6 52 71-122 42-96 (260)
33 3u5c_E RP5, S7, YS6, 40S ribos 93.2 0.038 1.3E-06 50.1 2.5 52 71-122 42-94 (261)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 91.1 0.041 1.4E-06 53.7 0.0 49 70-118 352-400 (420)
35 1h3f_A Tyrosyl-tRNA synthetase 89.4 0.46 1.6E-05 46.4 6.0 47 70-116 368-414 (432)
36 1fm0_D Molybdopterin convertin 88.3 1.6 5.6E-05 31.6 7.0 52 68-122 23-76 (81)
37 2jan_A Tyrosyl-tRNA synthetase 88.0 0.32 1.1E-05 47.5 3.7 45 72-116 357-401 (432)
38 2ts1_A Tyrosyl-tRNA synthetase 83.8 0.21 7.2E-06 48.6 0.0 49 70-118 351-399 (419)
39 2ktl_A Tyrosyl-tRNA synthetase 82.7 1.7 5.9E-05 36.6 5.2 36 70-105 49-84 (164)
40 2q5w_D Molybdopterin convertin 71.7 3.2 0.00011 29.7 3.3 25 97-122 48-72 (77)
41 2hj1_A Hypothetical protein; s 71.7 1.3 4.4E-05 34.0 1.2 52 69-123 34-85 (97)
42 1rws_A Hypothetical protein PF 71.5 2.3 7.8E-05 30.8 2.5 44 69-122 29-72 (77)
43 3po0_A Small archaeal modifier 70.5 3.4 0.00012 30.5 3.3 26 96-122 59-84 (89)
44 3fm8_A Kinesin-like protein KI 67.4 6.4 0.00022 31.4 4.5 25 96-121 90-114 (124)
45 3rpf_C Molybdopterin convertin 66.1 3.8 0.00013 29.3 2.7 50 70-122 20-69 (74)
46 1wv3_A Similar to DNA segregat 65.6 7.1 0.00024 34.7 4.9 41 94-149 133-174 (238)
47 1ryj_A Unknown; beta/alpha pro 59.2 7.5 0.00026 27.4 3.2 44 69-122 22-65 (70)
48 3hvz_A Uncharacterized protein 59.1 7.1 0.00024 28.5 3.1 24 98-122 44-67 (78)
49 2cu3_A Unknown function protei 58.7 7.7 0.00026 26.8 3.1 45 69-122 12-59 (64)
50 1vjk_A Molybdopterin convertin 58.7 5.3 0.00018 30.2 2.4 25 97-122 69-93 (98)
51 3dwg_C 9.5 kDa culture filtrat 56.7 8.5 0.00029 28.5 3.3 26 97-122 60-88 (93)
52 4egx_A Kinesin-like protein KI 54.1 11 0.00038 32.1 4.0 24 96-120 140-163 (184)
53 1tyg_B YJBS; alpha beta barrel 52.4 11 0.00038 28.1 3.2 43 71-122 37-82 (87)
54 1f0z_A THis protein; ubiquitin 51.2 8.3 0.00028 26.8 2.2 45 69-122 14-61 (66)
55 2kl0_A Putative thiamin biosyn 51.1 7.2 0.00024 28.0 1.9 45 69-122 13-60 (73)
56 2k5p_A THis protein, thiamine- 48.9 8.2 0.00028 28.1 2.0 46 69-122 16-64 (78)
57 2kmm_A Guanosine-3',5'-BIS(dip 45.3 15 0.0005 25.6 2.8 24 98-122 39-62 (73)
58 2g1e_A Hypothetical protein TA 44.4 12 0.0004 27.3 2.3 26 97-122 57-85 (90)
59 2k9x_A Tburm1, uncharacterized 43.5 16 0.00054 28.4 3.0 46 73-122 40-97 (110)
60 2l32_A Small archaeal modifier 43.3 8.7 0.0003 27.6 1.3 44 68-122 18-61 (74)
61 4ejq_A Kinesin-like protein KI 42.6 17 0.00058 29.9 3.2 24 96-120 110-133 (154)
62 1wln_A Afadin; beta sandwich, 37.3 31 0.001 26.8 3.8 26 95-121 79-104 (120)
63 3uv0_A Mutator 2, isoform B; F 36.6 11 0.00037 29.1 0.9 22 94-117 60-81 (102)
64 2l52_A Methanosarcina acetivor 35.4 16 0.00056 27.5 1.8 26 97-122 66-94 (99)
65 2qjl_A URM1, ubiquitin-related 35.3 30 0.001 25.9 3.4 26 97-122 66-94 (99)
66 3gqs_A Adenylate cyclase-like 33.2 21 0.00072 27.0 2.2 24 97-121 70-93 (106)
67 3hx1_A SLR1951 protein; P74513 33.0 24 0.00084 28.0 2.6 25 96-122 82-106 (131)
68 1v8c_A MOAD related protein; r 32.9 31 0.001 28.8 3.3 26 97-122 54-82 (168)
69 2og0_A Excisionase; protein-DN 28.9 58 0.002 21.7 3.5 29 71-99 3-31 (52)
70 3oug_A Aspartate 1-decarboxyla 26.7 34 0.0012 26.7 2.3 23 95-121 69-91 (114)
71 4h87_A Kanadaptin; FHA domain 26.6 43 0.0015 26.5 3.0 24 97-121 95-120 (130)
72 1wgk_A Riken cDNA 2900073H19 p 25.6 17 0.00057 28.4 0.3 46 73-122 48-103 (114)
73 3po8_A RV0020C protein, putati 25.0 39 0.0013 25.1 2.4 23 97-121 66-88 (100)
74 1r21_A Antigen KI-67; beta san 22.7 39 0.0013 26.4 2.0 24 97-121 76-99 (128)
75 2jqj_A DNA damage response pro 21.9 43 0.0015 27.1 2.2 26 96-121 87-112 (151)
76 2xt9_B Putative signal transdu 20.1 57 0.0019 24.9 2.4 23 97-121 74-96 (115)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=6.2e-55 Score=417.95 Aligned_cols=246 Identities=37% Similarity=0.568 Sum_probs=155.6
Q ss_pred EEEEEcCCCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeE
Q 019431 60 LEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 139 (341)
Q Consensus 60 ~~~~v~~~~~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~I 139 (341)
++.+|+.+++++|||+||++.++.+||+.++++|++|+|+|||+++.+++++|++||.|++...........+...+++|
T Consensus 6 ~~~~v~~~~~g~RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 6 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEEECCccCCchHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeE
Confidence 45677888899999999999866899999999999999999999866899999999999998754332223345667899
Q ss_pred EeeCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCC
Q 019431 140 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 219 (341)
Q Consensus 140 lyed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD 219 (341)
+|||++++|+|||+||+||+.++...+|+++.|..++.. . ....++++|||||
T Consensus 86 lyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~--~-------------------------~~~~~~~~vhRLD 138 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--I-------------------------ADVPRAGIVHRLD 138 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGG--G-------------------------GGSGGGGBCCCCC
T ss_pred EEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHh--c-------------------------CCCCceeeecCCC
Confidence 999999999999999999999887778999999876521 0 0114678999999
Q ss_pred CCCceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCceeEEEE
Q 019431 220 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRY 299 (341)
Q Consensus 220 ~~TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a~t~~ 299 (341)
++||||||||+|+.+++.|+++|+++.++|+|+|+|.|.+++ ++.|+.||.++..++.++.+.. +++.|.|+|
T Consensus 139 ~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~-~g~i~~~i~~~~~~~~~~~v~~------~gk~a~t~~ 211 (325)
T 1v9f_A 139 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHP------MGKPAVTHY 211 (325)
T ss_dssp TTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEECT------TSBCCEEEE
T ss_pred CCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCC-CCEEeeeeeECCCCCEEEEECC------CCeeEEEEE
Confidence 999999999999999999999999999999999999999977 8999999999888778877763 689999999
Q ss_pred EEEEEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceecccC
Q 019431 300 KVIEILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKVF 341 (341)
Q Consensus 300 ~~l~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~~ 341 (341)
++++.. .+.++++|+|.|||+||||+||+++||||+||.+
T Consensus 212 ~vl~~~--~~~slv~~~l~TGR~HQIRvhla~lG~PI~GD~~ 251 (325)
T 1v9f_A 212 RIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 251 (325)
T ss_dssp EEEEEC--SSEEEEEEEESCCCTTHHHHHHHHTTCCBTTCTT
T ss_pred EEeEEc--CCeEEEEEEECCCCcHHHHHHHHhCCCceeCChh
Confidence 999884 5799999999999999999999999999999974
No 2
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=2.2e-46 Score=342.97 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=162.4
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEee-CCcEE
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVL 147 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilye-d~~ll 147 (341)
+++|||+||++. +.+||+.++++|++|+|+|||+++++++++|++||.|++.. ..|+|| |++++
T Consensus 2 ~~~RLd~~L~~~-~~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~l 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEE
T ss_pred CcccHHHHHHHc-CCCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEE
Confidence 468999999987 58999999999999999999999966899999999999853 147999 99999
Q ss_pred EEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceeEE
Q 019431 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (341)
Q Consensus 148 vvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLll 227 (341)
|+|||+||+||+.++. .+|+.+.|..++ ..++++|||||++||||||
T Consensus 67 vvnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll 113 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDEPV--------------------------------AWKLHAAGRLDIDTTGLVL 113 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCCTT--------------------------------GGGCEESSCCCTTCEEEEE
T ss_pred EEECCCCCEeCCCCCC-CCcHHHHhhhhh--------------------------------cCCeeEcCCCCCCCeeEEE
Confidence 9999999999998874 668776553221 1357899999999999999
Q ss_pred eecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCceeEEEEEEEEEecC
Q 019431 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 307 (341)
Q Consensus 228 ~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~ 307 (341)
||+|++++..|.. +++.++|+|+|+|.|.++++. ++.+.. ++.... ....++.|. |+++.
T Consensus 114 ~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~~--i~~~~~---------g~~~~~-~~~~~~~a~--~~~~~---- 173 (234)
T 1ksk_A 114 MTDDGQWSHRITS--PRHHCEKTYLVTLESPVADDT--AEQFAK---------GVQLHN-EKDLTKPAV--LEVIT---- 173 (234)
T ss_dssp EESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH--HHHHHH---------CCCCTT-CSSCCCCCE--EEEEE----
T ss_pred EEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHHH--HHHHHC---------CeEECC-CCcccceEE--EEEeC----
Confidence 9999998888776 678999999999999987653 222210 111110 011244554 56663
Q ss_pred CCEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 308 GGSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 308 ~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
.++++|+|.|||+||||+||+++||||+||.
T Consensus 174 --~s~~~~~l~tGR~HQIR~h~~~lG~pi~gd~ 204 (234)
T 1ksk_A 174 --PTQVRLTISEGRYHQVKRMFAAVGNHVVELH 204 (234)
T ss_dssp --TTEEEEEESCCCTTHHHHHHHHTTCCEEEEE
T ss_pred --CeEEEEEEccCCCHHHHHHHHHcCCeEeeeE
Confidence 4899999999999999999999999999996
No 3
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=2.2e-45 Score=338.21 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=159.3
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEeeCCc-EEE
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLV 148 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~-llv 148 (341)
.+|||+||++. +.+||+.++++|++|+|+|||+++++++++|.+||.|.+.. ..|+|||++ ++|
T Consensus 2 ~~RLd~~L~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~ed~~~~lv 66 (243)
T 1vio_A 2 SLRLDKFIAEN-VGLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED--------------ELLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHH-HTCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT--------------EECCSSCCCCEEE
T ss_pred CccHHHHHHHc-CCCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec--------------cccccCCCCEEEE
Confidence 36999999987 58999999999999999999999967899999999988842 247999999 999
Q ss_pred EeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceeEEe
Q 019431 149 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 228 (341)
Q Consensus 149 vnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLll~ 228 (341)
+|||+||+||+.++. ..|+.+.|..++ ..++++|||||++|||||||
T Consensus 67 vnKP~G~~~~~~~~~-~~tl~~~l~~~~--------------------------------~~~~~~vhRLD~~TsGlll~ 113 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL--------------------------------AGKLHSAGRLDVDTTGLVLL 113 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG--------------------------------GGGCEESSCCCTTCEEEEEE
T ss_pred EECCCCCEeCCCCCC-CCcHHHHHhHHh--------------------------------cCCEeEccCCCCCCeEEEEE
Confidence 999999999998764 667766553321 13578999999999999999
Q ss_pred ecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCceeEEEEEEEEEecCC
Q 019431 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGG 308 (341)
Q Consensus 229 ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~~ 308 (341)
|+|++++..+.. +++.++|+|+|+|.|.++++. ++.+.. ++.... ....+++|. +++++
T Consensus 114 ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~~--i~~~~~---------g~~~~~-~~~~~~~a~--~~~l~----- 172 (243)
T 1vio_A 114 TDDGQWSHRITS--PKHHCEKTYLVTLADPVEENY--SAACAE---------GILLRG-EKEPTKPAK--LEILD----- 172 (243)
T ss_dssp ESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH--HHHHHH---------CCCCTT-CSSCCCCCE--EEECS-----
T ss_pred EECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHHH--HHHHhC---------CeEECC-CCccceeEE--EEEeC-----
Confidence 999987777765 678999999999999987653 222221 111100 011355555 44442
Q ss_pred CEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 309 GSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 309 ~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
.++++|+|.|||+||||+||+++||||+||.
T Consensus 173 -~sl~~~~l~tGR~HQIR~hl~~lG~pI~gd~ 203 (243)
T 1vio_A 173 -DYNVNLTISEGRYHQVKRMFAALGNKVVGLH 203 (243)
T ss_dssp -SSEEEEEESCCCTTHHHHHHHHTTCCEEEEE
T ss_pred -CEEEEEEEccCCcHHHHHHHHHCCCeEcccE
Confidence 5899999999999999999999999999996
No 4
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=5.9e-43 Score=316.88 Aligned_cols=166 Identities=30% Similarity=0.435 Sum_probs=146.0
Q ss_pred eeEEeeCCcEEEEeCCCCCeeecCCC-CCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCcccc
Q 019431 137 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 215 (341)
Q Consensus 137 ~~Ilyed~~llvvnKP~Gl~~~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (341)
++|+|||++++|+|||+|++||+..+ ....++++.|..++ .++++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999998764 45678998887653 245789
Q ss_pred ccCCCCCceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCcee
Q 019431 216 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 295 (341)
Q Consensus 216 hRLD~~TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a 295 (341)
||||++||||||||+|+++++.|+.+|+++.++|+|+|+|.|.++++++.|+.||.++..++.++.+... +++.|
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~~-----~gk~a 133 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYE-----TGKPA 133 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECTT-----TCBCC
T ss_pred ecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeCC-----CCcEE
Confidence 9999999999999999999999999999999999999999999998889999999887655555555432 68999
Q ss_pred EEEEEEEEEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceecccC
Q 019431 296 ASRYKVIEILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKVF 341 (341)
Q Consensus 296 ~t~~~~l~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~~ 341 (341)
.|+|++++... .+.++++|+|.|||+||||+||+++||||+||.+
T Consensus 134 ~t~~~vl~~~~-~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~~ 178 (217)
T 2i82_A 134 QTEYEVVEYAA-DNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 178 (217)
T ss_dssp EEEEEEEEEET-TTEEEEEEEESSCCTTHHHHHHHHTTCCBTTCTT
T ss_pred EEEEEEEEECC-CCeEEEEEEECCCCcHHHHHHHHHCCCcEECccc
Confidence 99999999853 2389999999999999999999999999999974
No 5
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=5.3e-43 Score=329.31 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=161.8
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEeeCCcEE
Q 019431 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 147 (341)
Q Consensus 68 ~~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~ll 147 (341)
++++|||+||++. +.+||+.++++|++|+|+|||+++ ++++.|.+||.|.|+.....+. .|||++||
T Consensus 4 ~~g~RLdk~La~~-g~~SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~-----------~~ed~~~l 70 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPR-----------EAEDLVLI 70 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCC-----------CGGGCCEE
T ss_pred ccchHHHHHHHhC-CCCCHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEecccccccc-----------ccccceEE
Confidence 5689999999997 789999999999999999999999 8999999999999987433211 37899999
Q ss_pred EEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCceeEE
Q 019431 148 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 227 (341)
Q Consensus 148 vvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGLll 227 (341)
|+|||+|++||+.++. ..|+++.|.. ..++++|||||++||||||
T Consensus 71 vvnKP~G~~~~~~~~~-~~tl~~~l~~----------------------------------~~~~~~VhRLD~dTSGLll 115 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVDFVNH----------------------------------SKRVFPIGRLDKDSQGLIF 115 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHHHHTC----------------------------------SSCCEESSCCCTTCEEEEE
T ss_pred EEECCCccccCCCCCC-CCcHHHHhhc----------------------------------cCceeeeccCCCCCcceEE
Confidence 9999999999998765 5688887742 1467899999999999999
Q ss_pred eecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCceeEEEEEEEEEecC
Q 019431 228 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 307 (341)
Q Consensus 228 ~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l~~~~~ 307 (341)
||+|++++..|.. +.+.++|+|+|+|.|.++++... .+..++... +.....+.++.
T Consensus 116 la~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~~i~-----------~l~~Gv~l~-----~~~~~~~~v~~------ 171 (290)
T 3dh3_A 116 LTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFIR-----------GMSAGVPIL-----GTVTKKCKVKK------ 171 (290)
T ss_dssp EESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHHHHH-----------HHHTCCBCS-----SSBCCCCEEEE------
T ss_pred EcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHHHHH-----------HHhcCcccC-----CcccceEEEEE------
Confidence 9999999999987 56889999999999998765422 111122221 22222233322
Q ss_pred CCEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 308 GGSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 308 ~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
.+.++++|+|.|||+||||+||+++||||+++.
T Consensus 172 ~~~~~l~l~l~tGR~HQIR~~~~~lG~pV~~L~ 204 (290)
T 3dh3_A 172 EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLE 204 (290)
T ss_dssp CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEEEeCCCChHHHHHHHHcCCeEEEeE
Confidence 245789999999999999999999999999863
No 6
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=1e-40 Score=304.27 Aligned_cols=165 Identities=28% Similarity=0.386 Sum_probs=141.3
Q ss_pred eEEeeCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCcccccc
Q 019431 138 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 217 (341)
Q Consensus 138 ~Ilyed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhR 217 (341)
+|+|||++++|+|||+|++||+..+ ...++++.+...+. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 5899999999999999999999765 45678877765431 0146788999
Q ss_pred CCCCCceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCC--CeeEEecCCCCCCCCCcee
Q 019431 218 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN--RIRMAAIPGSNKHGQARHA 295 (341)
Q Consensus 218 LD~~TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~k~a 295 (341)
||++||||||||+|+++++.|+++|+++.++|+|+|+|.|.++++++.|+.||.++... ...+.+.. +++.|
T Consensus 52 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~~------~gk~a 125 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ------EGKPS 125 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECT------TSBCC
T ss_pred CCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEECC------CCcEE
Confidence 99999999999999999999999999999999999999999998999999999876432 22233322 68999
Q ss_pred EEEEEEEEEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceecccC
Q 019431 296 ASRYKVIEILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKVF 341 (341)
Q Consensus 296 ~t~~~~l~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~~ 341 (341)
.|+|++++.. .+.++++|+|.|||+||||+||+++||||+||.+
T Consensus 126 ~t~~~vl~~~--~~~slv~~~l~TGR~HQIR~hla~lG~PI~gD~~ 169 (228)
T 1v9k_A 126 ETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 169 (228)
T ss_dssp CEEEEEEEEC--SSEEEEEEEESSCCTTHHHHHHHHTTCCBTTCTT
T ss_pred EEEEEEEEEc--CCeEEEEEEECCCCchHHHHHHHHCCCcEecCcc
Confidence 9999999884 5689999999999999999999999999999974
No 7
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=1.3e-38 Score=282.51 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=119.0
Q ss_pred eeEEeeCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccc
Q 019431 137 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 216 (341)
Q Consensus 137 ~~Ilyed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 216 (341)
..|||||++++|+|||+||+||+.++...+|+.+.|. ..++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----------------------------------CSSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----------------------------------CCCceECC
Confidence 4689999999999999999999988776677654331 03568899
Q ss_pred cCCCCCceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCC-cEEEecceeCCCCC--eeEEecCCCCCCCCCc
Q 019431 217 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDPNNR--IRMAAIPGSNKHGQAR 293 (341)
Q Consensus 217 RLD~~TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~-~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~k 293 (341)
|||++||||||||+|+++++.|+.+ .+.++|+|+|+|.|.++++. ..+..++....... ....... ....
T Consensus 49 RLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-----~~~~ 121 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-----EPAW 121 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHHHHST--TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-----CCTT
T ss_pred CCCCCCeeEEEEEcCHHHHHHHhCc--cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-----cccc
Confidence 9999999999999999999999995 68899999999999987654 24555554321110 1111111 0122
Q ss_pred eeEEEEEEEEEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 294 HAASRYKVIEILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 294 ~a~t~~~~l~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
.+.|.|+++... ..+.+|++|+|.|||+||||+||+++||||+||.
T Consensus 122 ~~~t~~~v~~~~-~~~~slv~~~l~TGR~HQIRvhla~lG~PI~gD~ 167 (189)
T 2oml_A 122 LWPRNPPIRERK-SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLI 167 (189)
T ss_dssp CCCCSSCCC-CT-TSCEEEEEEEESCCCTTHHHHHHHHTTCCEEEEE
T ss_pred cccccccccccc-CCCcEEEEEEEeeCCCHHHHHHHHHcCCcCcceE
Confidence 335666666542 2468999999999999999999999999999996
No 8
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=1.6e-37 Score=281.07 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=111.9
Q ss_pred CCeeEEeeCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccc
Q 019431 135 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 214 (341)
Q Consensus 135 ~~~~Ilyed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (341)
..++|||||++++|+|||+|++||+.++....|+.+.|. ..++++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~ 74 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYA 74 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----------------------------------CCSCEE
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----------------------------------cCCceE
Confidence 346899999999999999999999988776677654331 035688
Q ss_pred cccCCCCCceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCC-cEEEecceeCCCC-C-eeEEecCCCCCCCC
Q 019431 215 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDPNN-R-IRMAAIPGSNKHGQ 291 (341)
Q Consensus 215 vhRLD~~TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~-~~i~~~l~~~~~~-~-~~~~~~~~~~~~~~ 291 (341)
|||||++||||||||+|+++++.|+.+ .+.|+|+|+|+|.|.++++. +.+..++...... + ....+... .
T Consensus 75 VhRLDr~TSGllllAk~~~~~~~L~~~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~~-----~ 147 (217)
T 2olw_A 75 AGRLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE-----P 147 (217)
T ss_dssp SSCCCTTCEEEEEEESCHHHHHHHHCT--TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECC-----C
T ss_pred CCCCCCCCeeEEEEEcCHHHHHHHHcc--cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEecC-----C
Confidence 999999999999999999999999985 68899999999999987654 2444444321100 0 00111100 0
Q ss_pred CceeEEEEEEEEEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 292 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 292 ~k~a~t~~~~l~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
. .+.+.+..+......+.+|++|+|.|||+||||+||+++||||+||.
T Consensus 148 ~-~~~~~~~~v~~~~~~~~slv~~~l~TGRtHQIRvhla~lG~PIvgD~ 195 (217)
T 2olw_A 148 A-WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLI 195 (217)
T ss_dssp T-TCCCCSSCCC-CCSSCEEEEEEEESCCCTTHHHHHHHHTTCCEEEEE
T ss_pred c-cccccccceeccCCCCcEEEEEEECcCCCHHHHHHHHHCCCcEeCCE
Confidence 0 01111111111112468999999999999999999999999999996
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.97 E-value=9.4e-32 Score=245.10 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=109.2
Q ss_pred CCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 019431 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (341)
Q Consensus 143 d~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (341)
++.|||+|||+|++|++.+. ...|+++.|.. ..++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~----------------------------------~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH----------------------------------SKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC----------------------------------SSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc----------------------------------cCCeeEecCCCCCC
Confidence 57899999999999998766 46788775521 14678999999999
Q ss_pred ceeEEeecCHHHHHHHHHHhhcCccceEEEEEEeccCCCCCcEEEecceeCCCCCeeEEecCCCCCCCCCceeEEEEEEE
Q 019431 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVI 302 (341)
Q Consensus 223 SGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~a~t~~~~l 302 (341)
|||||||+|++++..|.. +.+.|+|+|+|+|.|.++++.+. .+ ..++... +++.+.+.++++
T Consensus 58 SGLLLlT~dg~~a~~L~~--p~~~v~K~Y~a~V~G~~~~~~i~---~l--------~~Gv~l~-----~~~~~~a~~~~l 119 (237)
T 2gml_A 58 QGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFIR---GM--------SAGVPIL-----GTVTKKCKVKKE 119 (237)
T ss_dssp EEEEEEESCHHHHHHHHH--HHHHSCEEEEEEESSCCCHHHHH---HH--------SSCCEET-----TEECCCCEEEEE
T ss_pred eeEEEEEcCHHHHHHHhC--ccCCCCEEEEEEEcccCCHHHHH---HH--------HcCeEeC-----CcccccEEEEEe
Confidence 999999999999999998 57789999999999998765422 01 1111111 344455666665
Q ss_pred EEecCCCEEEEEEEeCCCchhHHHHHHHhCCCceeccc
Q 019431 303 EILAGGGSALVEWRLETGRTHQVLMLYKLFYIPRMIKV 340 (341)
Q Consensus 303 ~~~~~~~~slv~~~l~TGR~HQIR~hla~lG~PIvGD~ 340 (341)
. .++++|+|.|||+||||+||+++||||+||.
T Consensus 120 ~------~s~l~i~L~tGR~HQIRr~~a~lG~pV~~L~ 151 (237)
T 2gml_A 120 A------PFVFRITLVQGLNRQIRRMCEHFGYEVKKLE 151 (237)
T ss_dssp E------TTEEEEEECCCSTTHHHHHHHHTTCCEEEEE
T ss_pred C------CEEEEEEEecCCcHHHHHHHHHcCCCEeeeE
Confidence 3 3789999999999999999999999999974
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.85 E-value=2.7e-10 Score=88.52 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=56.7
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccc--------cCCCCCeeEEee
Q 019431 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRA--------EAEDIPLDIVYE 142 (341)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~--------~~~~~~~~Ilye 142 (341)
+|||+||++.....||+.++++|++|.|+|||+++ ++++.|++||.|.|.......... -+....+.++||
T Consensus 1 ~RLD~~L~~~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lye 79 (92)
T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIA 79 (92)
T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEE
T ss_pred ChHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHH
Confidence 58999999863334999999999999999999998 799999999999997654321110 012234778888
Q ss_pred CCcE
Q 019431 143 DDNV 146 (341)
Q Consensus 143 d~~l 146 (341)
|+++
T Consensus 80 d~~~ 83 (92)
T 2k6p_A 80 PKTK 83 (92)
T ss_dssp ECCC
T ss_pred hcCC
Confidence 8764
No 11
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=98.77 E-value=1.1e-09 Score=82.80 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=49.2
Q ss_pred CccchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccCCCEEeeecc
Q 019431 68 AGKLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (341)
Q Consensus 68 ~~~~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 123 (341)
.+++|||+||++. +.+ ||++++++|++|.|+|||++++++++.|.+||.|++...
T Consensus 18 ~~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~ 73 (79)
T 1p9k_A 18 HPHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp CSCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred CCCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECCE
Confidence 4569999999997 555 999999999999999999998889999999999998653
No 12
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.72 E-value=4.4e-09 Score=93.82 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=62.8
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEeeCCcEEEE
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~llvv 149 (341)
++|||+||++.....||+.++++|.+|.|+|||++++.+++.|++||.|+|......... -..++.+
T Consensus 98 e~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~r~~~~-------------~~~~l~~ 164 (209)
T 2vqe_D 98 ESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLEL-------------IRQNLEA 164 (209)
T ss_dssp HTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHH-------------HHHHHHH
T ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCcccchHH-------------HHHHHHh
Confidence 589999999874356999999999999999999999889999999999999875432211 1123444
Q ss_pred e---CCCCCeeecCCC
Q 019431 150 N---KPAHMVVHPAPG 162 (341)
Q Consensus 150 n---KP~Gl~~~~~~~ 162 (341)
| ||+|+++...+.
T Consensus 165 ~~~~kp~g~l~~d~~~ 180 (209)
T 2vqe_D 165 MKGRKVGPWLSLDVEG 180 (209)
T ss_dssp TTTCCCCTTCCEETTT
T ss_pred cCCCCCCCeEEEeccc
Confidence 5 999999876554
No 13
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.71 E-value=8.3e-09 Score=88.27 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=61.2
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEeeCCcEEEE
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~llvv 149 (341)
.+|||++|.+.....||+.++++|.+|.|+|||++++++++.|.+||.|+|........... -.. +.+
T Consensus 50 e~RLD~~L~~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~~~~~~kl~-------~al--~~~--- 117 (159)
T 1c05_A 50 ESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIK-------EAL--EAN--- 117 (159)
T ss_dssp HHBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGGGSSCHHHH-------HHH--HTC---
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeCceehHHHHH-------HHH--HHh---
Confidence 58999999987445699999999999999999999988999999999999977533211100 000 112
Q ss_pred eCCCCCeeecCC
Q 019431 150 NKPAHMVVHPAP 161 (341)
Q Consensus 150 nKP~Gl~~~~~~ 161 (341)
+||+|++|...+
T Consensus 118 ~~~~g~v~~d~~ 129 (159)
T 1c05_A 118 NYIPDYLSFDPE 129 (159)
T ss_dssp CCCCSSEEEETT
T ss_pred CCCCCeEEEecC
Confidence 899999997544
No 14
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.71 E-value=2.8e-08 Score=82.53 Aligned_cols=56 Identities=29% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeecc
Q 019431 67 KAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (341)
Q Consensus 67 ~~~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 123 (341)
.++++|||+||+......||+.++++|.+|.|+|||+++ ++++.|++||.|.|...
T Consensus 5 ~~~~~RLDk~L~~~~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 (133)
T ss_dssp CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEET
T ss_pred cccchhHHHHHHHCCCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeC
Confidence 456899999999864457999999999999999999998 89999999999999764
No 15
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5e-08 Score=72.13 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=44.9
Q ss_pred chHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccC--CCEEee
Q 019431 71 LRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKG--GDMVNC 120 (341)
Q Consensus 71 ~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~--gD~I~v 120 (341)
+|||++|.+. +.+ ||+.++++|.+|.|+|||+++++|++.|.+ +|.|.+
T Consensus 8 ~RLD~~l~~~-gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~ 59 (71)
T 2cqj_A 8 RRLPTVLLKL-RMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTW 59 (71)
T ss_dssp EEHHHHHHHT-TCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEE
T ss_pred HHHHHHHHHh-CCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEE
Confidence 5999999998 566 999999999999999999999999999998 688875
No 16
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.35 E-value=1.4e-07 Score=83.46 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=49.5
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccc
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~ 124 (341)
.+|||+||++.....||+.++++|..|.|+|||++++.+++.|++||+|+|....
T Consensus 94 e~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~ 148 (205)
T 3r8n_D 94 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 148 (205)
T ss_dssp HTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSS
T ss_pred HhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCch
Confidence 5899999998644569999999999999999999998899999999999997654
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.27 E-value=6.1e-07 Score=83.91 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=49.8
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECC-E-EeccccccccCCCEEeeeccc
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSING-Q-VVSKVSHNVKGGDMVNCTISE 124 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG-~-~v~~~~~~v~~gD~I~v~~~~ 124 (341)
.++|||+||+++....||+.++++|++|+|+||| + +++++++.|.+||.|+|....
T Consensus 5 ~~~RLD~~L~~~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g~~ 62 (291)
T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEK 62 (291)
T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTCC
T ss_pred chhhHHHHHHHcCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcccc
Confidence 3679999999885456999999999999999999 8 788999999999999997653
No 18
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.26 E-value=4.1e-07 Score=80.35 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=48.8
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccc
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISE 124 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~ 124 (341)
.+|||+||++.....||+.++++|..|.|+|||++++.+++.|++||.|+|....
T Consensus 88 e~RLD~~L~r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~ 142 (201)
T 3bbn_D 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQ 142 (201)
T ss_dssp HSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSST
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcccc
Confidence 4799999988733459999999999999999999998899999999999997654
No 19
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.17 E-value=8.5e-07 Score=76.90 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=47.4
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccCC--CEEeeec
Q 019431 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGG--DMVNCTI 122 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~g--D~I~v~~ 122 (341)
.+|||++|.+. +.+ ||+.++++|.+|.|+|||++|+.+++.|.+| |.|.|..
T Consensus 102 e~RLD~~L~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~ 156 (180)
T 3j20_D 102 ERRLQTIVYKK-GLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYAR 156 (180)
T ss_dssp HTSHHHHHHHH-TSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSS
T ss_pred hhhhhheeecC-cccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeC
Confidence 47999999887 566 9999999999999999999999999999999 8899854
No 20
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=98.08 E-value=1.9e-06 Score=74.96 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=44.6
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccCCCEEee
Q 019431 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v 120 (341)
.+|||++|.+. +.+ ||+.++++|.+|.|+|||++|+.+++.|.+||.+.|
T Consensus 106 e~RLD~vL~~~-G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I 156 (181)
T 2xzm_D 106 ERRLQTRVFKL-NLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSI 156 (181)
T ss_dssp TTBHHHHHHHT-TCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCE
T ss_pred ccchhHHHHhc-cccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEE
Confidence 47999999887 566 999999999999999999999999999999974333
No 21
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.89 E-value=4.7e-06 Score=73.02 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=45.2
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccCCC--EEeee
Q 019431 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGD--MVNCT 121 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD--~I~v~ 121 (341)
.+|||.+|.+. +.+ ||+.++++|..|.|+|||++|+.|++.|.+|+ .|.+.
T Consensus 106 e~RLD~~L~r~-G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~ 159 (197)
T 3u5c_J 106 ERRLQTQVYKL-GLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFA 159 (197)
T ss_dssp TTSHHHHHHHS-STTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCC
T ss_pred HHHHHHHHHHc-cccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEc
Confidence 37999999987 555 99999999999999999999999999999995 56653
No 22
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.54 E-value=1e-06 Score=77.15 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=47.9
Q ss_pred cchHHHHHHhccCCC-CHHHHHHHHHcCceEECCEEeccccccccCCCEEeeecc
Q 019431 70 KLRLDAWISSRIDGI-SRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~-SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 123 (341)
.+|||.+|.+. +.+ ||+.|+++|..|.|+|||++|+.|++.|.+||++.|.+.
T Consensus 108 e~RLD~~L~r~-G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 108 ARRLQTLVFKA-GMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp TSCCCSSCCCC-CCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred HhhhhHHHHhc-cccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEec
Confidence 47999999987 665 999999999999999999999999999999999888653
No 23
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.03 E-value=0.00057 Score=64.43 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=54.3
Q ss_pred CcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCc
Q 019431 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (341)
Q Consensus 144 ~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 223 (341)
+.+|++|||+||-++ .++..++..+. ..+.+..+.||...|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~-------------------------------~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN-------------------------------ANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc-------------------------------cceeccCCCCCCCCe
Confidence 679999999999875 57788877653 256788999999999
Q ss_pred eeEEeecCHHHHHHHHHHhhcCccceEEEEEEe
Q 019431 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (341)
Q Consensus 224 GLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~ 256 (341)
|+|+++-...+ ++.+.+.. -.|+|.|.+.
T Consensus 66 GvL~i~~G~aT--Kl~~~l~~--~~K~Y~a~~~ 94 (327)
T 1k8w_A 66 GMLPICLGEAT--KFSQYLLD--SDKRYRVIAR 94 (327)
T ss_dssp EEEEEEEGGGG--GGTHHHHT--SCEEEEEEEE
T ss_pred eEEEEEECHHH--hHHHHhcc--CCcEEEEEEE
Confidence 99999987642 24444443 3899999875
No 24
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.02 E-value=0.00045 Score=64.66 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCCc
Q 019431 144 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 223 (341)
Q Consensus 144 ~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 223 (341)
+.+|++|||+||-|| .+++.++..+. ..+.+..|.||...|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 579999999999876 57788877663 257788999999999
Q ss_pred eeEEeecCHHHHHHHHHHhhcCccceEEEEEEe
Q 019431 224 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (341)
Q Consensus 224 GLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~ 256 (341)
|+|+++-.+. -++.+.+. .-.|+|.|.+.
T Consensus 44 GvL~i~iG~a--TKl~~~l~--~~~K~Y~a~~~ 72 (309)
T 1r3e_A 44 GVLIIGVNQG--TRILEFYK--DLKKVYWVKMR 72 (309)
T ss_dssp EEEEEEEGGG--GGGGGGGT--TSCEEEEEEEE
T ss_pred eeEEEEECHH--HhHHHHhC--ccCcEEEEEEE
Confidence 9999999863 23444443 34899999875
No 25
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.91 E-value=0.00061 Score=63.87 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=55.5
Q ss_pred CCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCCC
Q 019431 143 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 222 (341)
Q Consensus 143 d~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 222 (341)
.+.+|++|||.||-|| .++..++..+. ..+.+..+.||...
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA-------------------------------TRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cccccccccCCCCC
Confidence 4689999999999875 57888877663 25778999999999
Q ss_pred ceeEEeecCHHHHHHHHHHhhcCccceEEEEEEe
Q 019431 223 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (341)
Q Consensus 223 SGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~ 256 (341)
||||+++-.+. .++.+.+. .-.|+|.|.+.
T Consensus 46 tGvL~i~iG~a--TKl~~~l~--~~~K~Y~~~~~ 75 (316)
T 1sgv_A 46 TGVLVIGIERA--TKILGLLT--AAPKSYAATIR 75 (316)
T ss_dssp EEEEEEEEGGG--GGGGGGTT--TSCEEEEEEEE
T ss_pred eEEEEEEECHH--HhHHHHhC--cCCcEEEEEEE
Confidence 99999999764 23444442 35999999875
No 26
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.91 E-value=0.0018 Score=58.28 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=47.7
Q ss_pred cchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 70 KLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 70 ~~RLdk~L~~~~~~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.+-|.=||...++. .+++++++.+.+|.|+|||++++.+++.+..+|+|++..
T Consensus 42 ~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~k 95 (243)
T 3j20_E 42 SIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPE 95 (243)
T ss_dssp CEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETT
T ss_pred ceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecc
Confidence 34688899998864 689999999999999999999999999999999999964
No 27
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.91 E-value=0.00062 Score=64.63 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=55.4
Q ss_pred eCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCC
Q 019431 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (341)
Q Consensus 142 ed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~ 221 (341)
-.+.+|++|||.|+-+| .++..++..+. ..+.+..|-||..
T Consensus 44 ~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~-------------------------------~~KvGH~GTLDP~ 84 (334)
T 2aus_C 44 IQYGVINLDKPPGPTSH--------EVVAWIKRILN-------------------------------LEKAGHGGTLDPK 84 (334)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cceeccccccCCc
Confidence 34789999999999875 57788877653 1567889999999
Q ss_pred CceeEEeecCHHHHHHHHHHhhcCccceEEEEEEe
Q 019431 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (341)
Q Consensus 222 TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~ 256 (341)
.||+|+++-.+. .++.+.+. ...|+|.|.+.
T Consensus 85 atGvL~v~~g~a--Tk~~~~l~--~~~K~Y~~~~~ 115 (334)
T 2aus_C 85 VSGVLPVALERA--TRVVQALL--PAGKEYVALMH 115 (334)
T ss_dssp CEEEEEEEEGGG--GGGGGGGT--TCCEEEEEEEE
T ss_pred cceeEEEEeChh--hhhHHHhc--ccCcEEEEEEE
Confidence 999999999743 24444443 35899999875
No 28
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.75 E-value=0.00088 Score=64.00 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=55.8
Q ss_pred eCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCC
Q 019431 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (341)
Q Consensus 142 ed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~ 221 (341)
-.+.+|++|||+|+-++ .++..++..+. ..+.+..+-||..
T Consensus 64 ~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~-------------------------------~~KvGH~GTLDP~ 104 (357)
T 2apo_A 64 IKYGVVVVDKPRGPTSH--------EVSTWVKKILN-------------------------------LDKAGHGGTLDPK 104 (357)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------ccccccccccCCC
Confidence 35789999999999875 57788877653 2567889999999
Q ss_pred CceeEEeecCHHHHHHHHHHhhcCccceEEEEEEe
Q 019431 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 256 (341)
Q Consensus 222 TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~ 256 (341)
.||+|+++-.+. .++.+.+. ...|+|.|.+.
T Consensus 105 AtGvL~v~~G~a--Tk~~~~l~--~~~K~Y~~~~~ 135 (357)
T 2apo_A 105 VTGVLPVALERA--TKTIPMWH--IPPKEYVCLMH 135 (357)
T ss_dssp CEEEEEEEEGGG--GGGGGGTT--SSCEEEEEEEE
T ss_pred ceeEEEEEeCHH--HhHHHHhc--cCCcEEEEEEE
Confidence 999999999743 24444443 47899999875
No 29
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=96.49 E-value=0.0033 Score=55.53 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=45.5
Q ss_pred cchHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccccccccCCCEEee
Q 019431 70 KLRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120 (341)
Q Consensus 70 ~~RLdk~L~~~~~~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v 120 (341)
.+.|.=||...++. .+++++++.+.+|.|+|||++++.+++.+..+|+|++
T Consensus 7 slPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 7 SVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred ceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 45577788887753 6889999999999999999999999999999999999
No 30
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.48 E-value=0.0033 Score=60.67 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=55.9
Q ss_pred eCCcEEEEeCCCCCeeecCCCCCCCcHHHHHHhhcCCCccccccccccccccccCcccccccccCCCCCCccccccCCCC
Q 019431 142 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 221 (341)
Q Consensus 142 ed~~llvvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~ 221 (341)
-.+.+|++|||.|+-+| .++..++..+. ..+.+..|-||..
T Consensus 57 ~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~ 97 (400)
T 3u28_A 57 ISSGVINLDKPSNPSSH--------EVVAWIKRILR-------------------------------CEKTGHSGTLDPK 97 (400)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHHT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cCcccccCCCCCC
Confidence 34789999999999876 57788877663 2577899999999
Q ss_pred CceeEEeecCHHHHHHHHHHhhcCccceEEEEEEe-ccC
Q 019431 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GVP 259 (341)
Q Consensus 222 TSGLll~ak~~~~a~~l~~~f~~~~v~K~Y~a~v~-G~~ 259 (341)
.||||+++-.+. -++.+.+.. -.|+|.|.+. |..
T Consensus 98 AtGvL~v~iG~a--TKl~~~l~~--~~K~Y~a~~~lG~~ 132 (400)
T 3u28_A 98 VTGCLIVCIDRA--TRLVKSQQG--AGKEYVCIVRLHDA 132 (400)
T ss_dssp CEEEEEEEEGGG--GGGHHHHHH--SCEEEEEEEEESSC
T ss_pred CeEEEEEEEChH--HhHhHHhcC--CCcEEEEEEEeCCC
Confidence 999999998742 223333322 5899999874 443
No 31
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.24 E-value=0.02 Score=52.04 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=52.5
Q ss_pred chHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeeccccCCccccCCCCCeeEEeeCCcEEEE
Q 019431 71 LRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (341)
Q Consensus 71 ~RLdk~L~~~~~~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~llvv 149 (341)
+-|.=||...+.. .+.+++++.+.+|.|.|||++.+...+.+---|+|+|+.. +..+++||.....+++
T Consensus 42 lPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt----------~e~fRll~D~kGrf~l 111 (265)
T 3iz6_D 42 LPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT----------GENYRLLYDTKGRFRL 111 (265)
T ss_dssp -CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSS----------CCEEEEEECTTSCEEE
T ss_pred eeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCC----------CCEEEEEECCCCcEEE
Confidence 3477788887754 5778999999999999999999888888888899999652 2235566655554444
Q ss_pred e
Q 019431 150 N 150 (341)
Q Consensus 150 n 150 (341)
+
T Consensus 112 ~ 112 (265)
T 3iz6_D 112 Q 112 (265)
T ss_dssp E
T ss_pred E
Confidence 4
No 32
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=94.33 E-value=0.078 Score=48.04 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=44.7
Q ss_pred chHHHHHHhccC-CCCHHHHHHHHHc--CceEECCEEeccccccccCCCEEeeec
Q 019431 71 LRLDAWISSRID-GISRARVQSSIRS--GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 71 ~RLdk~L~~~~~-~~SR~~~~~lI~~--G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
+-|.=||...+. ..+.++++..+.+ |.|.|||++.+...+.+---|+|+|..
T Consensus 42 lPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~k 96 (260)
T 2xzm_W 42 LPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEK 96 (260)
T ss_dssp EEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGG
T ss_pred ehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcC
Confidence 458888988875 3689999999999 999999999987788888889999864
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=93.22 E-value=0.038 Score=50.10 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred chHHHHHHhccCC-CCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 71 LRLDAWISSRIDG-ISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 71 ~RLdk~L~~~~~~-~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
+-|.=||...+.. .+.+++++.+.+|.|.|||++.+...+.+---|+|+|+.
T Consensus 42 lPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~k 94 (261)
T 3u5c_E 42 LPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDA 94 (261)
T ss_dssp EEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETT
T ss_pred eeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcC
Confidence 3588899988764 578999999999999999999988888888889999965
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.08 E-value=0.041 Score=53.72 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEE
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I 118 (341)
++.|.++|...--.-|+++++++|++|.|+|||.+++..+..+.++|.+
T Consensus 352 ~i~l~~lL~~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4578888887632459999999999999999999998888888888754
No 35
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=89.44 E-value=0.46 Score=46.36 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=40.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCC
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD 116 (341)
+..|.++|...--.-|+++++++|++|.|+|||.+++.++..+..++
T Consensus 368 ~~~~~~~l~~~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~~ 414 (432)
T 1h3f_A 368 RIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSR 414 (432)
T ss_dssp EEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSS
T ss_pred cCcHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEecCccceecCCC
Confidence 56788898876335699999999999999999999988888887765
No 36
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=88.30 E-value=1.6 Score=31.56 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=36.1
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcC--ceEECCEEeccccccccCCCEEeeec
Q 019431 68 AGKLRLDAWISSRIDGISRARVQSSIRSG--LVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 68 ~~~~RLdk~L~~~~~~~SR~~~~~lI~~G--~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.++..+.+++....... ..+++++..+ .|.|||+.+ ..++.|+.||+|.+-+
T Consensus 23 ~~~~tv~~ll~~L~~~~--p~~~~~l~~~~~~v~vN~~~v-~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQS--DRWALALEDGKLLAAVNQTLV-SFDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTC--HHHHHHHCCTTCEEEETTEEC-CTTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHC--hhHHHHhcCCCEEEEECCEEC-CCCCCCCCCCEEEEeC
Confidence 34557777666542112 3566677555 478999998 5789999999999854
No 37
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=87.97 E-value=0.32 Score=47.49 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.8
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCC
Q 019431 72 RLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116 (341)
Q Consensus 72 RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD 116 (341)
.|.++|...--.-|+++++++|++|.|+|||.+++.++..+.++|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~ 401 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSD 401 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGG
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhh
Confidence 688888876335699999999999999999999988887777654
No 38
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=83.79 E-value=0.21 Score=48.60 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEE
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I 118 (341)
+..|.++|...--.-|+++++++|++|.|+|||.+++.++..+.++|.+
T Consensus 351 ~~~~~~~l~~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~ 399 (419)
T 2ts1_A 351 DVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL 399 (419)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHHhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhcc
Confidence 4567888876633459999999999999999999998788888776543
No 39
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=82.65 E-value=1.7 Score=36.58 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=30.2
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEe
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVV 105 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v 105 (341)
+..|.++|...--.-|+++++++|.+|-|+|||.++
T Consensus 49 g~~ivdlLv~aGLa~SKsEARRlI~qGGv~VNg~kv 84 (164)
T 2ktl_A 49 DKTFSKVLWSAGLVASKSEGQRIINNNGAYVGSRPG 84 (164)
T ss_dssp SCSHHHHHHHHTSCSTHHHHHHHHHHTCEEEEECCS
T ss_pred CCcHHHHHHHhCcccCHHHHHHHHHhCCEEECCEec
Confidence 456888888763345999999999999999999876
No 40
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.69 E-value=3.2 Score=29.68 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred ceEECCEEeccccccccCCCEEeeec
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+ ..++.|+.||+|.+.+
T Consensus 48 ~v~vNg~~v-~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFV-QKSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEE-CTTSEECTTCEEEEEC
T ss_pred EEEECCEEC-CCCCCcCCCCEEEEEC
Confidence 589999999 5689999999999854
No 41
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=71.69 E-value=1.3 Score=34.03 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=35.1
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeecc
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTIS 123 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 123 (341)
++..+.+.|... +. ....-+=-+....|-|||+.+ +.++.|+.||+|+|+..
T Consensus 34 ~g~TV~daI~~~-gi-~~~~peIdl~~~~V~Vng~~v-~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 34 EGITVQTAITQS-GI-LSQFPEIDLSTNKIGIFSRPI-KLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp TTCBHHHHHHHH-TH-HHHCTTCCTTTSEEEEEECSC-CTTCBCCTTCEEEECCC
T ss_pred CCCcHHHHHHHc-CC-CccCCcccccccEEEEcCEEC-CCCccCCCCCEEEEEec
Confidence 456788888764 32 211000011245789999999 68999999999999864
No 42
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=71.49 E-value=2.3 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
++.++.++|... + .+ ...=.|.|||+.+ ..++.|+.||+|.|..
T Consensus 29 ~~~Tv~dLl~~L-~-~~-------~~~v~VavNg~~v-~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 29 EGMKVRDILRAV-G-FN-------TESAIAKVNGKVV-LEDDEVKDGDFVEVIP 72 (77)
T ss_dssp SSCCHHHHHHTT-T-CS-------SCSSCEEETTEEE-CSSSCCCSSCCCBCSC
T ss_pred CCCcHHHHHHHh-C-CC-------CcCEEEEECCEEC-CCCCCcCCCCEEEEEc
Confidence 346788888764 3 22 1222588999999 5679999999999854
No 43
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=70.50 E-value=3.4 Score=30.47 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.5
Q ss_pred CceEECCEEeccccccccCCCEEeeec
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
-.|.|||+.+ ..++.|+.||+|.+.+
T Consensus 59 ~~v~VN~~~v-~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 59 INVLRNGEAA-ALGEATAAGDELALFP 84 (89)
T ss_dssp SEEEETTEEC-CTTSBCCTTCEEEEEC
T ss_pred EEEEECCEEC-CCCcccCCCCEEEEEC
Confidence 3688999999 5789999999999865
No 44
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=67.39 E-value=6.4 Score=31.37 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.8
Q ss_pred CceEECCEEeccccccccCCCEEeee
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
..++|||+++. ....|+.||+|.+-
T Consensus 90 ngt~VNG~~V~-~~~~L~~GD~I~lG 114 (124)
T 3fm8_A 90 TRTFVNGSSVS-SPIQLHHGDRILWG 114 (124)
T ss_dssp CCEEETTEECC-SCEEECTTCEEEET
T ss_pred CCEEECCEEcC-CcEECCCCCEEEEC
Confidence 36899999995 45889999999983
No 45
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.12 E-value=3.8 Score=29.29 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=33.1
Q ss_pred cchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 70 KLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 70 ~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
+..+.+++... ... ..+.+++..-.|.|||+.+...++.|+.||+|.+-+
T Consensus 20 ~~tv~~ll~~L-~~~--~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 20 ANDLKELRAIL-QEK--EGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CSSHHHHHHHH-HTC--TTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred CCcHHHHHHHH-HHC--cCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 34566655443 111 123344566778899998557889999999999854
No 46
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=65.65 E-value=7.1 Score=34.67 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=31.0
Q ss_pred HcCceEECCEEecccccccc-CCCEEeeeccccCCccccCCCCCeeEEeeCCcEEEE
Q 019431 94 RSGLVSINGQVVSKVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 149 (341)
Q Consensus 94 ~~G~V~VNG~~v~~~~~~v~-~gD~I~v~~~~~~~~~~~~~~~~~~Ilyed~~llvv 149 (341)
.+|-|.|||++++ ....++ .||.|.+.. +.+.+..+.++++
T Consensus 133 ~ngtvyvNg~~i~-~~~~L~~~GD~I~ig~--------------~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 133 KNTDVYINYELQE-QLTNKAYIGDHIYVEG--------------IWLEVQADGLNVL 174 (238)
T ss_dssp TTCCEEETTEECC-SSEEEEETTCEEEETT--------------EEEEECSSEEEEE
T ss_pred CCCCEEECCEEec-cceeccCCcCEEEECC--------------EEEEEECCEEEEE
Confidence 4788999999984 556899 999999954 3455566776663
No 47
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=59.22 E-value=7.5 Score=27.44 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.5
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
++.++.++|.+. + ... ..=.|-+||..+ ..+..|+.||+|.+-.
T Consensus 22 ~~~tv~~Ll~~l-~-~~~-------~~v~vavN~~~v-~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 22 APRRIKDVLGEL-E-IPI-------ETVVVKKNGQIV-IDEEEIFDGDIIEVIR 65 (70)
T ss_dssp SCCBHHHHHHHT-T-CCT-------TTEEEEETTEEC-CTTSBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHh-C-CCC-------CCEEEEECCEEC-CCcccCCCCCEEEEEe
Confidence 346899988774 3 221 111478999999 5678999999999854
No 48
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=59.08 E-value=7.1 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.589 Sum_probs=21.0
Q ss_pred eEECCEEeccccccccCCCEEeeec
Q 019431 98 VSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 98 V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.+|||+.+ ..++.|+.||.|+|..
T Consensus 44 AkVNG~~v-~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 44 AKVDGRIV-PIDYKVKTGEIIDVLT 67 (78)
T ss_dssp EEETTEEE-CTTCBCCTTCBEEEEE
T ss_pred EEECCEEc-CCCcccCCCCEEEEEc
Confidence 47899999 6899999999999854
No 49
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=58.75 E-value=7.7 Score=26.79 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.0
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEecc---ccccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSK---VSHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~---~~~~v~~gD~I~v~~ 122 (341)
++..+.++|... . ..+ ..=.|-|||+.+.+ .++.|+.||+|.+-.
T Consensus 12 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 12 EGKTLKEVLEEM-G-VEL-------KGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTCCHHHHHHHH-T-BCG-------GGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 356788888765 3 331 11248899999843 248999999999854
No 50
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=58.71 E-value=5.3 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.6
Q ss_pred ceEECCEEeccccccccCCCEEeeec
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+ ..++.|+.||+|.|-+
T Consensus 69 ~v~VNg~~v-~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 69 NIAVNGRYV-SWDEELKDGDVVGVFP 93 (98)
T ss_dssp EEEETTBCC-CTTCBCCTTCEEEEES
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEEC
Confidence 488999998 5789999999999854
No 51
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=56.67 E-value=8.5 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceEECCEEecc---ccccccCCCEEeeec
Q 019431 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~~---~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+.. .++.|+.||+|.+-+
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 57899999843 589999999999854
No 52
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=54.11 E-value=11 Score=32.07 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred CceEECCEEeccccccccCCCEEee
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v 120 (341)
..++|||++|+ ....|+.||+|.+
T Consensus 140 a~t~VNG~~I~-~~~~L~~GDrI~l 163 (184)
T 4egx_A 140 ADTYVNGKKVT-EPSILRSGNRIIM 163 (184)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CeEEEcCEEcc-ccEEcCCCCEEEE
Confidence 46999999995 4588999999987
No 53
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.44 E-value=11 Score=28.05 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=30.4
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---cccccCCCEEeeec
Q 019431 71 LRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (341)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~---~~~v~~gD~I~v~~ 122 (341)
..|.++|.+. + ... ..=.|-|||+.+.+. ++.|+.||+|+|-.
T Consensus 37 ~Tv~dLL~~L-~-~~~-------~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 37 GTIQDLLASY-Q-LEN-------KIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp CBHHHHHHHT-T-CTT-------SCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CcHHHHHHHh-C-CCC-------CCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 7899988774 3 221 122477999998543 57899999999854
No 54
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=51.23 E-value=8.3 Score=26.76 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---cccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~---~~~v~~gD~I~v~~ 122 (341)
++..+.++|... . ..+ ..=.|-|||+.+.+. ++.|+.||+|.+-.
T Consensus 14 ~~~tv~~ll~~l-~-~~~-------~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 14 AGQTVHELLEQL-D-QRQ-------AGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp TTCCHHHHHHHH-T-CCC-------SSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred CCCcHHHHHHHc-C-CCC-------CCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 456788888765 3 221 111477999998432 68899999999854
No 55
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=51.05 E-value=7.2 Score=28.00 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=31.8
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---cccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~---~~~v~~gD~I~v~~ 122 (341)
++..|.++|.+. +. .. +.=.|-+||..+.+. ++.|+.||+|+|-.
T Consensus 13 ~~~Tl~~LL~~l-~~-~~-------~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 13 QSASVAALMTEL-DC-TG-------GHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSBHHHHHHHT-TC-CS-------SSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCcHHHHHHHc-CC-CC-------CcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 457899999875 43 31 112478999998543 57899999999853
No 56
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=48.91 E-value=8.2 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccc---cccccCCCEEeeec
Q 019431 69 GKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKV---SHNVKGGDMVNCTI 122 (341)
Q Consensus 69 ~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~---~~~v~~gD~I~v~~ 122 (341)
++..|.++|.+. + +.+ -+.=.|-+||..+.+. ++.|+.||+|+|-.
T Consensus 16 ~~~Tl~~LL~~l-~-~~~------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 16 ESLNVTELLSAL-K-VAQ------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp SCEEHHHHHHHH-T-CSC------TTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred CCCcHHHHHHHc-C-CCC------CCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 457899999875 4 331 1122588999998543 47899999999843
No 57
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=45.30 E-value=15 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.2
Q ss_pred eEECCEEeccccccccCCCEEeeec
Q 019431 98 VSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 98 V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
+.|||+.+ ..++.|..||.|++-.
T Consensus 39 a~vNg~lv-dl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 39 AKVNHKLV-PLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEETTEEC-CTTCBCCSSSBEEEEE
T ss_pred EEECCEEe-CCCcCcCCCCEEEEEE
Confidence 47899998 6789999999998743
No 58
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=44.38 E-value=12 Score=27.33 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=21.2
Q ss_pred ceEECCEEecc---ccccccCCCEEeeec
Q 019431 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~~---~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+.. .++.|+.||+|.+-+
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 58899998842 688999999999854
No 59
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=43.47 E-value=16 Score=28.45 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=30.4
Q ss_pred HHHHHHhccCCCCHHHHHHHH-HcC--c------eEECCEEe---ccccccccCCCEEeeec
Q 019431 73 LDAWISSRIDGISRARVQSSI-RSG--L------VSINGQVV---SKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 73 Ldk~L~~~~~~~SR~~~~~lI-~~G--~------V~VNG~~v---~~~~~~v~~gD~I~v~~ 122 (341)
|-++|++.++.. |. +++ ..| . |.|||+.+ ...++.|+.||+|.+-.
T Consensus 40 Ll~~L~~~~~~~-r~---~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 40 LVQLLKTNYVKE-RP---DLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HHHHHTTTTCCS-CH---HHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred HHHHHHHHcccc-ch---hhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 566676665444 33 334 344 2 78999876 25679999999998843
No 60
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=43.35 E-value=8.7 Score=27.65 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=31.1
Q ss_pred CccchHHHHHHhccCCCCHHHHHHHHHcCceEECCEEeccccccccCCCEEeeec
Q 019431 68 AGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 68 ~~~~RLdk~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.++.++.++|.+. + ++...+ .|.+||+.+ ..+..+. ||.|+|-.
T Consensus 18 ~~g~Tv~dLL~~L-g-l~~~~V-------vV~vNG~~v-~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 18 DDDGTYADLVRAV-D-LSPHEV-------TVLVDGRPV-PEDQSVE-VDRVKVLR 61 (74)
T ss_dssp STTCSHHHHHHTT-C-CCSSCC-------CEECCCCCC-CTTSSSC-CCCEEECS
T ss_pred CCCCcHHHHHHHc-C-CCcceE-------EEEECCEEC-CHHHCCC-CCEEEEEE
Confidence 3467899998774 4 443321 588999998 5677665 99999843
No 61
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=42.63 E-value=17 Score=29.86 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.2
Q ss_pred CceEECCEEeccccccccCCCEEee
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNC 120 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v 120 (341)
..++|||+++. ....|+.||+|.+
T Consensus 110 ngt~VNG~~i~-~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 110 ADTYVNGKKVT-EPSILRSGNRIIM 133 (154)
T ss_dssp CCEEETTEECC-SCEECCTTCEEEE
T ss_pred CceEECCEEcC-CceECCCCCEEEE
Confidence 35899999994 4578999999988
No 62
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=37.29 E-value=31 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=20.6
Q ss_pred cCceEECCEEeccccccccCCCEEeee
Q 019431 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 95 ~G~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
..-++|||+++. ....|+.||+|.+-
T Consensus 79 ~ngt~vNg~~i~-~~~~L~~GD~I~iG 104 (120)
T 1wln_A 79 DAETYVDGQRIS-ETTMLQSGMRLQFG 104 (120)
T ss_dssp SSCEEETSCBCS-SCEEECTTCEEEET
T ss_pred CCCEEECCEEcC-CCEECCCCCEEEEC
Confidence 346889999985 44689999999883
No 63
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=36.61 E-value=11 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.3
Q ss_pred HcCceEECCEEeccccccccCCCE
Q 019431 94 RSGLVSINGQVVSKVSHNVKGGDM 117 (341)
Q Consensus 94 ~~G~V~VNG~~v~~~~~~v~~gD~ 117 (341)
.+|.|+|||+++ -...|..||.
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDt 81 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENA 81 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGC
T ss_pred ccCcEEECCEEe--eeEEccCCcc
Confidence 468999999998 3567777776
No 64
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=35.38 E-value=16 Score=27.48 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceEECCEEec---cccccccCCCEEeeec
Q 019431 97 LVSINGQVVS---KVSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~---~~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+. ..++.|+.||+|.+-+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 6899999874 3678999999999854
No 65
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=35.34 E-value=30 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.8
Q ss_pred ceEECCEEec---cccccccCCCEEeeec
Q 019431 97 LVSINGQVVS---KVSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~---~~~~~v~~gD~I~v~~ 122 (341)
.|.|||+-+. ..++.|+.||+|.+-+
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 3779999763 4678999999999854
No 66
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=33.16 E-value=21 Score=27.03 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.5
Q ss_pred ceEECCEEeccccccccCCCEEeee
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
-++|||+++. ....|+.||+|.+-
T Consensus 70 Gt~vng~~i~-~~~~L~~Gd~i~~G 93 (106)
T 3gqs_A 70 GVIVEGRKIE-HQSTLSANQVVALG 93 (106)
T ss_dssp CCEETTEECS-SEEECCTTCCEEET
T ss_pred CeEECCEECC-CCeECCCCCEEEEC
Confidence 4789999984 35689999999884
No 67
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=33.01 E-value=24 Score=27.98 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=20.4
Q ss_pred CceEECCEEeccccccccCCCEEeeec
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v~~ 122 (341)
.-++|||+++.. ..|+.||+|.+-.
T Consensus 82 NGT~vNg~~i~~--~~L~~GD~I~iG~ 106 (131)
T 3hx1_A 82 NGLMINGKKVQE--HIIQTGDEIVMGP 106 (131)
T ss_dssp SCEEETTEEESE--EECCTTCEEECST
T ss_pred CceEECCEEeEe--EECCCCCEEEECC
Confidence 358899999853 8999999999843
No 68
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=32.93 E-value=31 Score=28.82 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.0
Q ss_pred ceEECCEEecc---ccccccCCCEEeeec
Q 019431 97 LVSINGQVVSK---VSHNVKGGDMVNCTI 122 (341)
Q Consensus 97 ~V~VNG~~v~~---~~~~v~~gD~I~v~~ 122 (341)
.|.|||+.+.. .++.|+.||+|.|-+
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 48899999843 278999999999854
No 69
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=28.94 E-value=58 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=23.2
Q ss_pred chHHHHHHhccCCCCHHHHHHHHHcCceE
Q 019431 71 LRLDAWISSRIDGISRARVQSSIRSGLVS 99 (341)
Q Consensus 71 ~RLdk~L~~~~~~~SR~~~~~lI~~G~V~ 99 (341)
+.|.+|-...++..|.+.+.+++++|.|.
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~ 31 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIF 31 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCC
Confidence 35788876654357999999999999994
No 70
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=26.73 E-value=34 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=16.6
Q ss_pred cCceEECCEEeccccccccCCCEEeee
Q 019431 95 SGLVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 95 ~G~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
+|.|.+||--+ +.+.+||.|-|-
T Consensus 69 Sg~I~lNGAAA----r~~~~GD~vII~ 91 (114)
T 3oug_A 69 SKTIALNGPAA----RRCEIGDQLFII 91 (114)
T ss_dssp SCCEEEEGGGG----GGCCTTCEEEEE
T ss_pred CCEEEeCCHHH----hccCCCCEEEEE
Confidence 46777777544 678899988774
No 71
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=26.60 E-value=43 Score=26.51 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=17.3
Q ss_pred ceEECCEEecccc--ccccCCCEEeee
Q 019431 97 LVSINGQVVSKVS--HNVKGGDMVNCT 121 (341)
Q Consensus 97 ~V~VNG~~v~~~~--~~v~~gD~I~v~ 121 (341)
-.+|||+++. ++ ..|+.||+|.+-
T Consensus 95 GT~vNg~ri~-~~~~~~L~~GD~I~~G 120 (130)
T 4h87_A 95 GTFLNKTRIP-PRTYCRVHVGHVVRFG 120 (130)
T ss_dssp CEEETTEECC-TTCCEECCTTCEEEET
T ss_pred ceEECCEECC-CCceeECCCCCEEEEC
Confidence 3457888873 33 468999999884
No 72
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=25.57 E-value=17 Score=28.44 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHhccCCCCHHHHHHHH-HcC------ceEECCEEe---ccccccccCCCEEeeec
Q 019431 73 LDAWISSRIDGISRARVQSSI-RSG------LVSINGQVV---SKVSHNVKGGDMVNCTI 122 (341)
Q Consensus 73 Ldk~L~~~~~~~SR~~~~~lI-~~G------~V~VNG~~v---~~~~~~v~~gD~I~v~~ 122 (341)
|-++|.+.++.. |. +++ ..| .|.|||+-+ ...++.|+.||+|.+-+
T Consensus 48 Ll~~L~~~~~~~-~~---~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 48 LLVWIKKNLLKE-RP---ELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp HHHHHTTTTCCS-CH---HHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred HHHHHHHHccch-hH---hhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 555666665544 22 222 334 378999864 35779999999998843
No 73
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=25.04 E-value=39 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.4
Q ss_pred ceEECCEEeccccccccCCCEEeee
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
-++|||+++. ...|+.||+|.+-
T Consensus 66 Gt~vng~~i~--~~~L~~gd~i~iG 88 (100)
T 3po8_A 66 GTTVNNAPVQ--EWQLADGDVIRLG 88 (100)
T ss_dssp CCEETTEECS--EEECCTTCEEEET
T ss_pred CEEECCEECc--eEECCCCCEEEEC
Confidence 5889999984 5789999999884
No 74
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=22.73 E-value=39 Score=26.43 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.5
Q ss_pred ceEECCEEeccccccccCCCEEeee
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
-++|||+++. ....|+.||+|.+-
T Consensus 76 Gt~vNg~~i~-~~~~L~~Gd~i~iG 99 (128)
T 1r21_A 76 PTQVNGSVID-EPVRLKHGDVITII 99 (128)
T ss_dssp CCEETTEECS-SCEECCTTEEEECS
T ss_pred CEEECCEECC-CcEEcCCCCEEEEC
Confidence 4689999984 35789999999984
No 75
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=21.95 E-value=43 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=19.8
Q ss_pred CceEECCEEeccccccccCCCEEeee
Q 019431 96 GLVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 96 G~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
.-++|||+++......|+.||+|.+-
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~lG 112 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVFG 112 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEET
T ss_pred CCeEECCEEcCCCceECCCCCEEEEC
Confidence 34789999984224789999999984
No 76
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=20.06 E-value=57 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=18.9
Q ss_pred ceEECCEEeccccccccCCCEEeee
Q 019431 97 LVSINGQVVSKVSHNVKGGDMVNCT 121 (341)
Q Consensus 97 ~V~VNG~~v~~~~~~v~~gD~I~v~ 121 (341)
-++|||+++. ...|+.||+|.+-
T Consensus 74 Gt~vng~~i~--~~~L~~gd~i~iG 96 (115)
T 2xt9_B 74 GTYVNREPVD--SAVLANGDEVQIG 96 (115)
T ss_dssp CEEETTEECS--EEEECTTCEEEET
T ss_pred CeEECCEEcc--eEECCCCCEEEEC
Confidence 4678999984 4789999999984
Done!