Query 019432
Match_columns 341
No_of_seqs 172 out of 410
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 99.5 9.5E-14 2E-18 128.6 8.8 124 2-129 153-278 (281)
2 smart00458 RICIN Ricin-type be 99.1 2.4E-10 5.2E-15 92.5 8.6 96 186-288 2-106 (117)
3 cd00161 RICIN Ricin-type beta- 99.0 3.8E-09 8.3E-14 84.8 10.1 93 190-288 9-114 (124)
4 PF00652 Ricin_B_lectin: Ricin 98.8 1.4E-08 3E-13 82.7 8.0 93 190-288 11-116 (124)
5 smart00458 RICIN Ricin-type be 98.1 9.1E-06 2E-10 65.6 6.5 72 184-256 40-117 (117)
6 PF14200 RicinB_lectin_2: Rici 98.1 1.1E-05 2.4E-10 65.7 6.9 76 180-256 14-105 (105)
7 cd00161 RICIN Ricin-type beta- 98.0 1.7E-05 3.7E-10 63.4 6.7 65 190-255 51-124 (124)
8 PF00652 Ricin_B_lectin: Ricin 97.8 4.7E-05 1E-09 61.7 6.2 70 183-253 47-124 (124)
9 PF14200 RicinB_lectin_2: Rici 97.7 0.00019 4.1E-09 58.4 8.4 74 211-288 2-93 (105)
10 KOG3736 Polypeptide N-acetylga 97.2 0.001 2.2E-08 70.2 8.0 106 184-304 457-571 (578)
11 COG2730 BglC Endoglucanase [Ca 96.5 0.0027 5.9E-08 64.2 4.6 90 6-99 213-326 (407)
12 smart00633 Glyco_10 Glycosyl h 95.9 0.074 1.6E-06 50.2 10.6 111 1-129 105-227 (254)
13 KOG3738 Predicted polypeptide 95.9 0.0041 9E-08 63.1 1.9 95 190-289 440-543 (559)
14 PF07745 Glyco_hydro_53: Glyco 92.2 0.57 1.2E-05 46.7 8.0 109 2-128 157-296 (332)
15 PF11790 Glyco_hydro_cc: Glyco 91.9 0.32 6.9E-06 45.8 5.6 36 85-120 164-202 (239)
16 KOG3736 Polypeptide N-acetylga 90.1 0.5 1.1E-05 50.3 5.6 64 192-257 507-574 (578)
17 KOG3737 Predicted polypeptide 87.4 0.44 9.5E-06 48.8 2.8 97 183-288 482-586 (603)
18 PF12876 Cellulase-like: Sugar 85.7 0.55 1.2E-05 37.3 2.0 45 1-51 44-88 (88)
19 PF03498 CDtoxinA: Cytolethal 77.5 4.3 9.3E-05 36.2 4.8 73 226-306 60-142 (150)
20 PF01229 Glyco_hydro_39: Glyco 70.6 12 0.00026 38.8 6.9 148 2-160 184-353 (486)
21 COG5309 Exo-beta-1,3-glucanase 66.7 14 0.00029 36.4 5.8 39 87-125 232-278 (305)
22 KOG3738 Predicted polypeptide 64.4 7.2 0.00016 40.3 3.6 70 188-257 480-555 (559)
23 PF02836 Glyco_hydro_2_C: Glyc 58.7 19 0.00041 34.4 5.3 16 85-100 197-212 (298)
24 KOG3737 Predicted polypeptide 55.3 22 0.00048 36.8 5.3 110 143-255 470-597 (603)
25 PRK10150 beta-D-glucuronidase; 49.1 1.5E+02 0.0032 31.6 10.6 66 86-152 501-579 (604)
26 cd07366 3MGA_Dioxygenase Subun 46.9 13 0.00028 37.1 2.2 22 1-22 75-96 (328)
27 PRK13363 protocatechuate 4,5-d 44.9 15 0.00032 36.8 2.2 23 1-23 77-99 (335)
28 PF00332 Glyco_hydro_17: Glyco 43.5 24 0.00052 34.7 3.4 50 68-117 205-262 (310)
29 PRK13364 protocatechuate 4,5-d 42.9 17 0.00036 35.4 2.2 24 1-24 37-60 (278)
30 cd07949 PCA_45_Doxase_B_like_1 40.6 19 0.00042 34.9 2.2 23 1-23 37-59 (276)
31 PF00331 Glyco_hydro_10: Glyco 40.5 1.7E+02 0.0037 28.7 8.9 107 2-129 159-286 (320)
32 PLN02899 alpha-galactosidase 40.4 21 0.00046 38.6 2.7 62 228-294 487-559 (633)
33 cd02068 radical_SAM_B12_BD B12 39.1 25 0.00054 29.2 2.4 28 2-29 56-83 (127)
34 PF02310 B12-binding: B12 bind 38.5 24 0.00051 28.6 2.1 29 2-30 69-97 (121)
35 cd07368 PhnC_Bs_like PhnC is a 34.7 26 0.00057 33.8 2.1 24 1-24 35-58 (277)
36 PLN02998 beta-glucosidase 34.2 68 0.0015 33.8 5.2 67 85-154 390-467 (497)
37 PRK13511 6-phospho-beta-galact 33.8 55 0.0012 34.0 4.4 64 88-154 370-447 (469)
38 cd07950 Gallate_Doxase_N The N 33.4 29 0.00063 33.6 2.2 23 1-23 37-59 (277)
39 COG3934 Endo-beta-mannanase [C 32.8 1.2E+02 0.0026 32.4 6.5 44 87-130 237-280 (587)
40 PRK09593 arb 6-phospho-beta-gl 31.4 1.4E+02 0.0031 31.2 7.0 68 85-154 367-449 (478)
41 cd07372 2A5CPDO_B The beta sub 30.6 35 0.00075 33.4 2.2 23 1-23 39-61 (294)
42 PF03498 CDtoxinA: Cytolethal 30.1 1.2E+02 0.0025 27.1 5.3 75 182-257 53-143 (150)
43 PRK13365 protocatechuate 4,5-d 30.1 36 0.00077 33.1 2.2 24 1-24 37-60 (279)
44 PLN02814 beta-glucosidase 29.4 84 0.0018 33.2 4.9 65 87-154 388-462 (504)
45 TIGR01233 lacG 6-phospho-beta- 25.1 1.3E+02 0.0028 31.4 5.3 64 88-154 369-445 (467)
46 PF15232 DUF4585: Domain of un 24.0 67 0.0015 25.6 2.3 15 182-196 30-44 (75)
47 cd07364 PCA_45_Dioxygenase_B S 23.5 55 0.0012 31.7 2.2 24 1-24 37-60 (277)
48 cd07369 PydA_Rs_like PydA is a 23.4 58 0.0013 32.5 2.4 25 1-25 35-59 (329)
49 cd07373 2A5CPDO_A The alpha su 23.3 56 0.0012 31.3 2.2 24 1-24 31-54 (271)
50 PRK09589 celA 6-phospho-beta-g 23.3 2.7E+02 0.0058 29.1 7.3 67 85-154 366-448 (476)
51 PRK09852 cryptic 6-phospho-bet 22.7 2.2E+02 0.0049 29.7 6.6 67 85-154 364-445 (474)
52 cd07365 MhpB_like Subunit B of 21.8 62 0.0013 32.0 2.2 24 1-24 31-54 (310)
53 PF00167 FGF: Fibroblast growt 21.7 2.9E+02 0.0063 22.9 6.0 55 227-285 9-65 (122)
54 cd07367 CarBb CarBb is the B s 21.4 64 0.0014 30.9 2.1 23 1-23 31-53 (268)
55 cd07359 PCA_45_Doxase_B_like S 20.9 67 0.0015 30.5 2.2 22 1-22 33-54 (271)
56 TIGR03356 BGL beta-galactosida 20.7 2.3E+02 0.0049 29.1 6.1 67 85-154 335-415 (427)
57 cd07370 HPCD The Class III ext 20.4 75 0.0016 30.5 2.4 25 1-26 34-58 (280)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.48 E-value=9.5e-14 Score=128.61 Aligned_cols=124 Identities=20% Similarity=0.360 Sum_probs=93.6
Q ss_pred hhHHHHHHhcCCCcEEEEcCCCCCCCchh-hhcccccccCCCcEEEEeeecCCCCC-ccccCCCCCcchhhHHHHHHhhh
Q 019432 2 QLGAEAVHAANPEVLVILSGLNFDKDLSF-VRNQAVNLTFTGKLVFEAHWYGFTDG-QAWVDGNPNQVCGRVVDNVMRLS 79 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~~~~~DLs~-v~~~Pv~l~~~~KLVYs~H~Y~~s~~-~~W~~~~~~~~c~~l~~~l~~~~ 79 (341)
+++.++||+++|+.+|+|+|..|..++.. +.+.|.. ..+++||++|.|.+... ..+... ....-..+.+.+....
T Consensus 153 ~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~~--~~~~~~~~~H~Y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 229 (281)
T PF00150_consen 153 QRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPND--ADNNDVYSFHFYDPYDFSDQWNPG-NWGDASALESSFRAAL 229 (281)
T ss_dssp HHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTTT--TTTSEEEEEEEETTTCHHTTTSTC-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecCCCccccccchhhhcCccc--ccCceeEEeeEeCCCCcCCccccc-cchhhhHHHHHHHHHH
Confidence 67899999999999999999999998887 6666622 25789999999996542 222110 0011233456666666
Q ss_pred hhhhhcCCceEEeecccCCCCCCcCchHHHHHHHHHHHhCCcceEeeecc
Q 019432 80 GFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELDWDWALWTLV 129 (341)
Q Consensus 80 gfll~~~~Pl~isEFG~~~~g~~~~d~~w~~~l~~yl~e~~i~Wa~W~l~ 129 (341)
.++.+.+.||+|+|||....+.+ ....++..+++++++++++|++|++.
T Consensus 230 ~~~~~~g~pv~~gE~G~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~W~~~ 278 (281)
T PF00150_consen 230 NWAKKNGKPVVVGEFGWSNNDGN-GSTDYADAWLDYLEQNGIGWIYWSWK 278 (281)
T ss_dssp HHHHHTTSEEEEEEEESSTTTSC-HHHHHHHHHHHHHHHTTCEEEECEES
T ss_pred HHHHHcCCeEEEeCcCCcCCCCC-cCHHHHHHHHHHHHHCCCeEEEEecC
Confidence 77777889999999999854332 34688889999999999999999996
No 2
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.13 E-value=2.4e-10 Score=92.54 Aligned_cols=96 Identities=24% Similarity=0.514 Sum_probs=74.9
Q ss_pred ecCCCcceeeecCCCCceeeecCCC---CCCceeeCCceeEeeccceeeeeccCC-CccEEecccC--CCCCceEEEecC
Q 019432 186 YHPATGLCVQRKSFLDPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHVG-KPAKLGIICT--DCGSTWEIISDS 259 (341)
Q Consensus 186 ~hp~tG~Cv~~~~~~~~l~l~~C~~---~~~W~~~~~~~l~l~~~~~CL~a~g~G-~~~~l~~~C~--~~~s~W~~~s~s 259 (341)
++..+|+|+++.+...++.+++|.+ .++|.|+++|.|+++ +++||++.+.. .++.+ +.|. +++|+|.+..++
T Consensus 2 ~~~~~~~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~~~~v~l-~~c~~~~~~Q~W~~~~~~ 79 (117)
T smart00458 2 ISGNTGKCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNTGSTVTL-YSCDGDADNQYWTVNKDG 79 (117)
T ss_pred eeccCCccEecCCCCceEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCCCCEEEE-EECCCCCcCCEEEECCCe
Confidence 3457899999965434699999988 389999999999988 89999998865 34455 8897 578999998866
Q ss_pred ceEEEeecCCCceeEEeecCCC---ceeeeee
Q 019432 260 KMHLSSKADNGTTVCLDVDSSN---TIVTNTC 288 (341)
Q Consensus 260 ~~hl~~~~~~~~~lCLd~~~~~---~ivt~~C 288 (341)
.++ . ..+++|||+.... .++.+.|
T Consensus 80 ~i~--~---~~~~~cl~~~~~~~~~~~~~~~c 106 (117)
T smart00458 80 TIR--N---PDSGLCLDVKDGNTGTKVILWTC 106 (117)
T ss_pred eEE--e---CCCCEEEecCCCCCCceEEEEeC
Confidence 653 2 2689999998533 5777887
No 3
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.99 E-value=3.8e-09 Score=84.76 Aligned_cols=93 Identities=28% Similarity=0.609 Sum_probs=72.4
Q ss_pred CcceeeecCC--CCceeeecCCCC---CCceeeCCceeEeeccceeeeeccC--CCccEEecccC--CCCCceEEEecCc
Q 019432 190 TGLCVQRKSF--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHV--GKPAKLGIICT--DCGSTWEIISDSK 260 (341)
Q Consensus 190 tG~Cv~~~~~--~~~l~l~~C~~~---~~W~~~~~~~l~l~~~~~CL~a~g~--G~~~~l~~~C~--~~~s~W~~~s~s~ 260 (341)
+|+|+++.+. ..++.+++|.++ |.|.++.+|.|++..+.+||++.+. |.++.+ ..|. +++|+|++..++.
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~-~~c~~~~~~Q~W~~~~~~~ 87 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRL-YTCSGGSDNQRWTFNKDGT 87 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEE-EECCCCCcCCEEEECCCcE
Confidence 9999999552 356999999975 7999999999988877899999886 566666 7897 4689999998755
Q ss_pred eEEEeecCCCceeEEeecCC---C-ceeeeee
Q 019432 261 MHLSSKADNGTTVCLDVDSS---N-TIVTNTC 288 (341)
Q Consensus 261 ~hl~~~~~~~~~lCLd~~~~---~-~ivt~~C 288 (341)
|... .+.+|||+... + .|+...|
T Consensus 88 --i~~~---~~~~cl~~~~~~~~~~~v~~~~c 114 (124)
T cd00161 88 --IRNL---KSGKCLDVKGGNTNGTNLILWTC 114 (124)
T ss_pred --EEEC---CCCeEEeCCCCCCCCCEEEEEeC
Confidence 4433 37899999853 3 4555776
No 4
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.83 E-value=1.4e-08 Score=82.67 Aligned_cols=93 Identities=27% Similarity=0.619 Sum_probs=69.0
Q ss_pred Ccceeeec---CCCCceeeecCCCC--CCceeeCCceeEeeccc-eeeeeccCC--CccEEecccC--CCCCceEEEecC
Q 019432 190 TGLCVQRK---SFLDPLTLGPCTES--EAWSYTPHKTISLKGAY-FCLQAKHVG--KPAKLGIICT--DCGSTWEIISDS 259 (341)
Q Consensus 190 tG~Cv~~~---~~~~~l~l~~C~~~--~~W~~~~~~~l~l~~~~-~CL~a~g~G--~~~~l~~~C~--~~~s~W~~~s~s 259 (341)
+|+|+++. ....++.+.+|.++ |.|.++.++.|...... +||++.+.+ .++.| ..|. +.+|+|.+..+.
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l-~~C~~~~~~Q~W~~~~~~ 89 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVL-WPCDSNSSNQRWKFDPDG 89 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEE-EETTTTGGGGBEEEETTS
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccCCCceEEE-eeccCCccCCeEEEcCCe
Confidence 99999998 23367999999996 68999999987776544 599999876 55666 8898 345999999955
Q ss_pred ceEEEeecCCCceeEEeecC--C-Cceeeeee
Q 019432 260 KMHLSSKADNGTTVCLDVDS--S-NTIVTNTC 288 (341)
Q Consensus 260 ~~hl~~~~~~~~~lCLd~~~--~-~~ivt~~C 288 (341)
.+ ... .+++|||+.. + +.++.+.|
T Consensus 90 ~i--~n~---~s~~cL~~~~~~~~~~l~~~~c 116 (124)
T PF00652_consen 90 RI--RNK---NSGLCLDVKGGSDGNPLVLWPC 116 (124)
T ss_dssp BE--EET---TTTEEEEEGGGSTTEBEEEEE-
T ss_pred eE--EeC---CCCEEEEecCCCCCCEEEEEEC
Confidence 54 422 4789999984 4 47777877
No 5
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.08 E-value=9.1e-06 Score=65.61 Aligned_cols=72 Identities=22% Similarity=0.394 Sum_probs=55.2
Q ss_pred eeecCCCcceeeecCCC-CceeeecCCC-C--CCceeeCCceeEeeccceeeeeccCCCccEE-ecccC-CCCCceEEE
Q 019432 184 VIYHPATGLCVQRKSFL-DPLTLGPCTE-S--EAWSYTPHKTISLKGAYFCLQAKHVGKPAKL-GIICT-DCGSTWEII 256 (341)
Q Consensus 184 ~i~hp~tG~Cv~~~~~~-~~l~l~~C~~-~--~~W~~~~~~~l~l~~~~~CL~a~g~G~~~~l-~~~C~-~~~s~W~~~ 256 (341)
.+++. +++|+++.+.. .++.+..|.+ + ++|.+..++.|....+++||++.+....+.+ ...|. +++|+|.+.
T Consensus 40 ~~~~~-~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~~~Q~W~~~ 117 (117)
T smart00458 40 AIRIA-TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKDGNTGTKVILWTCNGNPNQKWIFE 117 (117)
T ss_pred eEEec-CCccCccCCCCCCEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCCCCCCceEEEEeCCCCccccEEeC
Confidence 44555 89999986543 4699999987 3 7999999888887789999999886552222 47898 679999863
No 6
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.08 E-value=1.1e-05 Score=65.75 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.7
Q ss_pred CceeeeecCCCcceeeecCC----CCceeeecCCCC--CCceeeCCc----eeEeeccceeeeeccC----CCccEEecc
Q 019432 180 GLHKVIYHPATGLCVQRKSF----LDPLTLGPCTES--EAWSYTPHK----TISLKGAYFCLQAKHV----GKPAKLGII 245 (341)
Q Consensus 180 ~~~~~i~hp~tG~Cv~~~~~----~~~l~l~~C~~~--~~W~~~~~~----~l~l~~~~~CL~a~g~----G~~~~l~~~ 245 (341)
..+|.|....||+|+++.+. .+++.+++|.+. ++|.+.+.+ .|.-+.+++||++.|. |+++.+ +.
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~-~~ 92 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQ-WE 92 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEE-EE
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEE-Ee
Confidence 45788999999999999552 357999999876 699998554 5666668999999875 455555 88
Q ss_pred c-C-CCCCceEEE
Q 019432 246 C-T-DCGSTWEII 256 (341)
Q Consensus 246 C-~-~~~s~W~~~ 256 (341)
| . +++|+|++.
T Consensus 93 ~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 93 YDNGSDNQQWKLE 105 (105)
T ss_dssp -STSSGGGEEEEE
T ss_pred CCCCCccCEEEeC
Confidence 8 5 889999973
No 7
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.00 E-value=1.7e-05 Score=63.40 Aligned_cols=65 Identities=23% Similarity=0.433 Sum_probs=53.1
Q ss_pred CcceeeecCC--CCceeeecCCC-C--CCceeeCCceeEeeccceeeeeccC---CCccEEecccC-CCCCceEE
Q 019432 190 TGLCVQRKSF--LDPLTLGPCTE-S--EAWSYTPHKTISLKGAYFCLQAKHV---GKPAKLGIICT-DCGSTWEI 255 (341)
Q Consensus 190 tG~Cv~~~~~--~~~l~l~~C~~-~--~~W~~~~~~~l~l~~~~~CL~a~g~---G~~~~l~~~C~-~~~s~W~~ 255 (341)
+++|+++.+. ..++.+.+|.. . ++|.+.+++.|....+++||++.+. |.++.+ ..|. +++|+|++
T Consensus 51 ~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~v~~-~~c~~~~~Q~W~~ 124 (124)
T cd00161 51 SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGNTNGTNLIL-WTCDGGPNQKWKF 124 (124)
T ss_pred CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCCCCCCCCEEEE-EeCCCCccceEeC
Confidence 8999998553 35699999987 3 7999998888888778999999886 566666 8898 78899974
No 8
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.81 E-value=4.7e-05 Score=61.74 Aligned_cols=70 Identities=24% Similarity=0.560 Sum_probs=55.8
Q ss_pred eeeecCCCcceeeecCCC--CceeeecCCCC---CCceeeCCceeEeeccceeeeecc--CCCccEEecccC-CCCCce
Q 019432 183 KVIYHPATGLCVQRKSFL--DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKH--VGKPAKLGIICT-DCGSTW 253 (341)
Q Consensus 183 ~~i~hp~tG~Cv~~~~~~--~~l~l~~C~~~---~~W~~~~~~~l~l~~~~~CL~a~g--~G~~~~l~~~C~-~~~s~W 253 (341)
.++......+|+++.+.. .++.+.+|... ++|.+.+++.|.-..+++||++.+ .+.++.+ ..|. +++|+|
T Consensus 47 ~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~~~~~~~l~~-~~c~~~~~Q~W 124 (124)
T PF00652_consen 47 QIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKGGSDGNPLVL-WPCNGSPNQQW 124 (124)
T ss_dssp BEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGGGSTTEBEEE-EE-TSSGGGBE
T ss_pred ceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecCCCCCCEEEE-EECCCCccccC
Confidence 344555556699996653 46999999987 699999988887777899999999 7888888 6898 888998
No 9
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=97.72 E-value=0.00019 Score=58.42 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=52.6
Q ss_pred CCCceeeC----Cce--eEeeccceeeeeccC----CCccEEecccC-CCCCceEEEecC--ceEEEeecCCCceeEEee
Q 019432 211 SEAWSYTP----HKT--ISLKGAYFCLQAKHV----GKPAKLGIICT-DCGSTWEIISDS--KMHLSSKADNGTTVCLDV 277 (341)
Q Consensus 211 ~~~W~~~~----~~~--l~l~~~~~CL~a~g~----G~~~~l~~~C~-~~~s~W~~~s~s--~~hl~~~~~~~~~lCLd~ 277 (341)
+++|++++ .|. |+=..+++||++.+. |.++.+ ++|. .++|+|++...+ ...|.++ .+++|||+
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~-~~~~~~~~Q~W~i~~~~~g~y~I~n~---~s~~~Ldv 77 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQ-WTCNGNDNQQWKIEPVGDGYYRIRNK---NSGKVLDV 77 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEE-EESSSSGGGEEEEEESTTSEEEEEET---STTEEEEE
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEE-ecCCCCcCcEEEEEEecCCeEEEEEC---CCCcEEEE
Confidence 46888875 443 443459999999986 444444 8887 889999998877 3456644 67899999
Q ss_pred cC----CC-ceeeeee
Q 019432 278 DS----SN-TIVTNTC 288 (341)
Q Consensus 278 ~~----~~-~ivt~~C 288 (341)
.. +| .|+.+.|
T Consensus 78 ~~~~~~~g~~v~~~~~ 93 (105)
T PF14200_consen 78 AGGSTANGTNVQQWEY 93 (105)
T ss_dssp GGGSSSTTEBEEEEE-
T ss_pred CCCCCCCCCEEEEEeC
Confidence 82 55 6777887
No 10
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.001 Score=70.23 Aligned_cols=106 Identities=23% Similarity=0.500 Sum_probs=78.1
Q ss_pred eeecCCCcceeeecC--C--CCceeeecCCCC---CCceeeCCceeEeeccceeeeeccCCCccEEecccC-CCCCceEE
Q 019432 184 VIYHPATGLCVQRKS--F--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DCGSTWEI 255 (341)
Q Consensus 184 ~i~hp~tG~Cv~~~~--~--~~~l~l~~C~~~---~~W~~~~~~~l~l~~~~~CL~a~g~G~~~~l~~~C~-~~~s~W~~ 255 (341)
.|....+++|++... . ..++.+.+|.+. |.|.||.+++|+..+ .||+..-.|. |.| ..|. ..||.|..
T Consensus 457 ~i~~~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~--~cl~~~~~~~-v~l-~~C~~~~~q~w~~ 532 (578)
T KOG3736|consen 457 EIRNGNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRIGD--LCLDVDDAGK-VTL-YDCHKMGNQLWHY 532 (578)
T ss_pred eeccCCcchhhhhhchhccCCCcceEecCCCccccccccccCCcceEECC--EEeccccCCc-eEE-EecccccccceEE
Confidence 445588999999844 1 246999999885 799999999999864 9998765555 777 8996 33999999
Q ss_pred EecCceEEEeecCCCceeEEeecCCCc-eeeeeeEEeCCCCCCCccCceE
Q 019432 256 ISDSKMHLSSKADNGTTVCLDVDSSNT-IVTNTCKCLSRDKTCDPASQWF 304 (341)
Q Consensus 256 ~s~s~~hl~~~~~~~~~lCLd~~~~~~-ivt~~C~c~~~d~~cdp~sqwf 304 (341)
-.++.+ . +.+++.||++..+.. ++-..|.|- +|..||+
T Consensus 533 ~~~~~i--~---~~~sg~CL~~~~~~~~~~l~~c~~~------~~~Q~W~ 571 (578)
T KOG3736|consen 533 DKDGTL--Y---HRNSGKCLEAAVDKNGLILVACDPS------DPTQQWL 571 (578)
T ss_pred cCCCce--E---cCCCCccccccCCCCCceEeecCCC------CCcceEE
Confidence 998553 3 446889999986432 333777653 4567884
No 11
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.0027 Score=64.21 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=54.8
Q ss_pred HHHHhcCCCcEEEEcCCCCCC---------------Cchhhhccccccc--CCCcEEEEeeecCCCCCc--cccCC----
Q 019432 6 EAVHAANPEVLVILSGLNFDK---------------DLSFVRNQAVNLT--FTGKLVFEAHWYGFTDGQ--AWVDG---- 62 (341)
Q Consensus 6 ~aIhaaNPn~LIIVsG~~~~~---------------DLs~v~~~Pv~l~--~~~KLVYs~H~Y~~s~~~--~W~~~---- 62 (341)
++|.+++|..+|.+.|..+.. ....+...|++.. +..+++|++|.||..... .|...
T Consensus 213 ~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~ 292 (407)
T COG2730 213 NAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGSWTVGGEFD 292 (407)
T ss_pred hhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCCCCccCCcc
Confidence 566677888899999986433 2222222333332 457899999999976432 45421
Q ss_pred CCCcchhhHHHHHHhhhhhh-hhcCCceEEeecccCCC
Q 019432 63 NPNQVCGRVVDNVMRLSGFL-LEQGWPLFVSEFGADLR 99 (341)
Q Consensus 63 ~~~~~c~~l~~~l~~~~gfl-l~~~~Pl~isEFG~~~~ 99 (341)
.+...|......+ ++- ...+.|++++|||..+.
T Consensus 293 ~~~~~~~~~~~~~----~~~~~~~g~~~~~Ge~g~~~~ 326 (407)
T COG2730 293 LAETDCAIWLNYV----GHGARKNGYPTVIGEFGGNYN 326 (407)
T ss_pred cccccceeeecce----eecccccceeeeeccccCccc
Confidence 1223343333333 322 24789999999999884
No 12
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=95.92 E-value=0.074 Score=50.18 Aligned_cols=111 Identities=11% Similarity=0.166 Sum_probs=67.4
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCCCCC-------c---hhhhcccccccCCCcEEEEeeecCCCCCccccCCCCCcchhh
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNFDKD-------L---SFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGR 70 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~~~D-------L---s~v~~~Pv~l~~~~KLVYs~H~Y~~s~~~~W~~~~~~~~c~~ 70 (341)
+.++-+++|+++|+..+++..-+-... + ..+.++-+. ++ -+=+..|++... + ....
T Consensus 105 i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~--iD-giGlQ~H~~~~~---------~--~~~~ 170 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVP--ID-GIGLQSHLSLGS---------P--NIAE 170 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCc--cc-eeeeeeeecCCC---------C--CHHH
Confidence 357889999999999999974321111 1 122222222 22 366677876311 0 1234
Q ss_pred HHHHHHhhhhhhhhcCCceEEeecccCCCCCCcCchHHHHHHHHHHHhCC--cceEeeecc
Q 019432 71 VVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELD--WDWALWTLV 129 (341)
Q Consensus 71 l~~~l~~~~gfll~~~~Pl~isEFG~~~~g~~~~d~~w~~~l~~yl~e~~--i~Wa~W~l~ 129 (341)
+.+.+++.+ +.+.||+||||+++..........+++.+++.+.++. .+.++|.+.
T Consensus 171 ~~~~l~~~~----~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 171 IRAALDRFA----SLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred HHHHHHHHH----HcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 666665433 2579999999999865321223467777777777765 678889774
No 13
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0041 Score=63.06 Aligned_cols=95 Identities=22% Similarity=0.457 Sum_probs=64.3
Q ss_pred CcceeeecC-CC-CceeeecCCCC---CCceeeCCceeEeeccceeeeecc--CCCccEEecccCCCCCceEEEecCceE
Q 019432 190 TGLCVQRKS-FL-DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKH--VGKPAKLGIICTDCGSTWEIISDSKMH 262 (341)
Q Consensus 190 tG~Cv~~~~-~~-~~l~l~~C~~~---~~W~~~~~~~l~l~~~~~CL~a~g--~G~~~~l~~~C~~~~s~W~~~s~s~~h 262 (341)
.-+|++..+ +. +.+.+++|-++ ++|.+.-+..-.+....+||.+.. .|+|++| .-|.....+|+.+-.+. |
T Consensus 440 g~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~~pg~~v~l-~~C~~~e~~q~~v~~~~-~ 517 (559)
T KOG3738|consen 440 GDNCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSNTPGSPVAL-VPCGNNETKQRWVELGG-H 517 (559)
T ss_pred cchhhhhhhcccccCcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecCCCCCeEEE-EecCCCCCceEEEecCC-c
Confidence 346998743 22 34789999887 799993222223334789999887 5999999 88995555666565554 4
Q ss_pred EEeecCCCceeEEeecC--CCceeeeeeE
Q 019432 263 LSSKADNGTTVCLDVDS--SNTIVTNTCK 289 (341)
Q Consensus 263 l~~~~~~~~~lCLd~~~--~~~ivt~~C~ 289 (341)
|. ..++.||||... +.-+.-+.|.
T Consensus 518 l~---h~~s~KOGd~~~~g~~~l~~~~C~ 543 (559)
T KOG3738|consen 518 LL---HAGSHLCLDNPLKGRWLLEVSTCE 543 (559)
T ss_pred hh---cccccceeccccCCCcceeecccc
Confidence 44 447999999985 4346556654
No 14
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.23 E-value=0.57 Score=46.71 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=63.4
Q ss_pred hhHHHHHHhcCCCcEEEEcCCCCCC------CchhhhcccccccCCCcEEEEeeecCCCCCccccCCCCCcchhhHHHHH
Q 019432 2 QLGAEAVHAANPEVLVILSGLNFDK------DLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNV 75 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~~~~~------DLs~v~~~Pv~l~~~~KLVYs~H~Y~~s~~~~W~~~~~~~~c~~l~~~l 75 (341)
..|.+|||+.+|+..|+|--.+=.. -+..++..-+++ + |.-++.|.+.+. ....+......+
T Consensus 157 ~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~--D---viGlSyYP~w~~-------~l~~l~~~l~~l 224 (332)
T PF07745_consen 157 NAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDF--D---VIGLSYYPFWHG-------TLEDLKNNLNDL 224 (332)
T ss_dssp HHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG---S---EEEEEE-STTST--------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCc--c---eEEEecCCCCcc-------hHHHHHHHHHHH
Confidence 4688999999999999996443211 233444443443 2 788999987653 111222222222
Q ss_pred HhhhhhhhhcCCceEEeecccCCCC-----C-C---------------cCchHHHHHHHHHHHh----CCcceEeeec
Q 019432 76 MRLSGFLLEQGWPLFVSEFGADLRG-----N-N---------------VNDNRYLNCFFGVAAE----LDWDWALWTL 128 (341)
Q Consensus 76 ~~~~gfll~~~~Pl~isEFG~~~~g-----~-~---------------~~d~~w~~~l~~yl~e----~~i~Wa~W~l 128 (341)
.. +.+-||+|.|.|.+.+. . + ....+|++.+++.+.+ ++++-+||.=
T Consensus 225 ~~------ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP 296 (332)
T PF07745_consen 225 AS------RYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEP 296 (332)
T ss_dssp HH------HHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-T
T ss_pred HH------HhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeecc
Confidence 22 24579999999987651 0 0 1245889999988887 6799999954
No 15
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=91.91 E-value=0.32 Score=45.77 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=25.7
Q ss_pred cCCceEEeecccCCCC---CCcCchHHHHHHHHHHHhCC
Q 019432 85 QGWPLFVSEFGADLRG---NNVNDNRYLNCFFGVAAELD 120 (341)
Q Consensus 85 ~~~Pl~isEFG~~~~g---~~~~d~~w~~~l~~yl~e~~ 120 (341)
.+.||+|||||..... ....-..|++..+.+|++++
T Consensus 164 ~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~ 202 (239)
T PF11790_consen 164 YGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQP 202 (239)
T ss_pred hCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4489999999975321 11223589999999998874
No 16
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.5 Score=50.32 Aligned_cols=64 Identities=23% Similarity=0.429 Sum_probs=48.7
Q ss_pred ceeeecCCCCceeeecC--CCCCCceeeCCceeEeeccceeeeeccCCCccEEecccC--CCCCceEEEe
Q 019432 192 LCVQRKSFLDPLTLGPC--TESEAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEIIS 257 (341)
Q Consensus 192 ~Cv~~~~~~~~l~l~~C--~~~~~W~~~~~~~l~l~~~~~CL~a~g~G~~~~l~~~C~--~~~s~W~~~s 257 (341)
.|+++..... +.+.+| .+.|.|.|..+|.|.=..+++||++...+..+.+ ..|. ++.|+|.+..
T Consensus 507 ~cl~~~~~~~-v~l~~C~~~~~q~w~~~~~~~i~~~~sg~CL~~~~~~~~~~l-~~c~~~~~~Q~W~~~~ 574 (578)
T KOG3736|consen 507 LCLDVDDAGK-VTLYDCHKMGNQLWHYDKDGTLYHRNSGKCLEAAVDKNGLIL-VACDPSDPTQQWLFEH 574 (578)
T ss_pred EEeccccCCc-eEEEecccccccceEEcCCCceEcCCCCccccccCCCCCceE-eecCCCCCcceEEEEe
Confidence 7887742213 899999 4457999998888777779999999998766666 4455 5689998764
No 17
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.44 Score=48.76 Aligned_cols=97 Identities=19% Similarity=0.316 Sum_probs=68.7
Q ss_pred eeeecCCCcceeeecCCC--CceeeecCCCC---CCceeeCCceeEeeccceeeeeccCCCccEEecccC-CC-CCceEE
Q 019432 183 KVIYHPATGLCVQRKSFL--DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DC-GSTWEI 255 (341)
Q Consensus 183 ~~i~hp~tG~Cv~~~~~~--~~l~l~~C~~~---~~W~~~~~~~l~l~~~~~CL~a~g~G~~~~l~~~C~-~~-~s~W~~ 255 (341)
--|+.++|+.|++..+.+ ..+.+++|-+. |--..+.+|+|- ....||.|.|.+- .+ +.|. +. +-.|+-
T Consensus 482 GE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl~--qge~CltAdg~~i--~~-~hC~lgtv~g~WqY 556 (603)
T KOG3737|consen 482 GEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLM--QGEQCLTADGSKI--MI-THCNLGTVKGEWQY 556 (603)
T ss_pred hhccCcccchhHHhcCCCCCCccccccccCCCCceEEEeccccchh--ccceeeecCCceE--EE-EEeecccccCceeh
Confidence 567889999999996642 45899999765 567777777543 3678999887653 33 6788 43 558998
Q ss_pred EecCceEEEeecCCCceeEEeecCCCceee-eee
Q 019432 256 ISDSKMHLSSKADNGTTVCLDVDSSNTIVT-NTC 288 (341)
Q Consensus 256 ~s~s~~hl~~~~~~~~~lCLd~~~~~~ivt-~~C 288 (341)
.-..|- +. ..-++.|||+.....-|+ ..|
T Consensus 557 ~~~tk~-~~---H~~~~kC~~~se~~~qv~l~~C 586 (603)
T KOG3737|consen 557 FKNTKR-FT---HIPSGKCLDRSEVLHQVFLSNC 586 (603)
T ss_pred hhcchh-ee---eccccccccccchhheeeeccc
Confidence 887762 22 224789999987665555 544
No 18
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=85.67 E-value=0.55 Score=37.35 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=23.9
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCCCCCchhhhcccccccCCCcEEEEeeec
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLTFTGKLVFEAHWY 51 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~~~DLs~v~~~Pv~l~~~~KLVYs~H~Y 51 (341)
|++++++||+++|+..|.++. |..+...+...++. .- =|+++|.|
T Consensus 44 l~~~~~~iR~~dP~~pvt~g~--~~~~~~~~~~~~~~--~~--DvisfH~Y 88 (88)
T PF12876_consen 44 LKEAFRWIRAVDPSQPVTSGF--WGGDWEDLEQLQAE--NL--DVISFHPY 88 (88)
T ss_dssp HHHHHHHHHTT-TTS-EE--B----S-TTHHHHS--T--T---SSEEB-EE
T ss_pred HHHHHHHHHHhCCCCcEEeec--ccCCHHHHHHhchh--cC--CEEeeecC
Confidence 468999999999999987653 44444444433321 12 37899988
No 19
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=77.48 E-value=4.3 Score=36.15 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=40.8
Q ss_pred ccceeeeeccCCCccEEecccCCCC--CceEEEec--CceEEEeecCCCceeEEeecCCC------ceeeeeeEEeCCCC
Q 019432 226 GAYFCLQAKHVGKPAKLGIICTDCG--STWEIISD--SKMHLSSKADNGTTVCLDVDSSN------TIVTNTCKCLSRDK 295 (341)
Q Consensus 226 ~~~~CL~a~g~G~~~~l~~~C~~~~--s~W~~~s~--s~~hl~~~~~~~~~lCLd~~~~~------~ivt~~C~c~~~d~ 295 (341)
.++.||.+.+.|.-.. ..|...+ |.|+++-- |.++|.+. +++.||-+..++ .|-...| ....
T Consensus 60 ~~~~CL~~~~~G~~~~--~~C~~~~~~q~F~iiPtttgAVQIks~---~~~~Cl~~~~~~~~~~~~~i~l~~C---d~~~ 131 (150)
T PF03498_consen 60 KTGTCLAAYGNGVFHY--KSCDQDNLEQVFSIIPTTTGAVQIKSL---STGECLQTFNNSRTPIYYSIGLTPC---DKSK 131 (150)
T ss_dssp TTSEEEEEETTCEEEE----TTTCHGHH-EEEEEBTTS-EEEEET---TT--EEEE-STTSS-SSEEEEEE------S-E
T ss_pred CCCcceeecCCCeEee--cccCCCChhceEEEEEcCCCcEEEEec---CCCceEEecCCCceeEEeeEEeeeC---CCcC
Confidence 3666999988886422 2399444 99998854 45677754 678999998644 4555777 2222
Q ss_pred CCCccCceEEE
Q 019432 296 TCDPASQWFKL 306 (341)
Q Consensus 296 ~cdp~sqwfkl 306 (341)
.=+...|||=.
T Consensus 132 ~~~l~~lw~it 142 (150)
T PF03498_consen 132 EINLDQLWFIT 142 (150)
T ss_dssp EETGGGEEEEE
T ss_pred CCCHHHcEEEc
Confidence 33667788743
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=70.56 E-value=12 Score=38.83 Aligned_cols=148 Identities=17% Similarity=0.300 Sum_probs=65.6
Q ss_pred hhHHHHHHhcCCCcEEEEcCC--CCCC------CchhhhcccccccCCCcEEEEeeecCCCCCccccCCCCCcchhhHH-
Q 019432 2 QLGAEAVHAANPEVLVILSGL--NFDK------DLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVV- 72 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~--~~~~------DLs~v~~~Pv~l~~~~KLVYs~H~Y~~s~~~~W~~~~~~~~c~~l~- 72 (341)
..++++|++++|... |+|+ .+.. -|.+++.+.+.++ ..|+|.|+......-. ...........
T Consensus 184 ~~~~~~iK~~~p~~~--vGGp~~~~~~~~~~~~~l~~~~~~~~~~D-----fiS~H~y~~~~~~~~~-~~~~~~~~~~~~ 255 (486)
T PF01229_consen 184 DATARAIKAVDPELK--VGGPAFAWAYDEWCEDFLEFCKGNNCPLD-----FISFHSYGTDSAEDIN-ENMYERIEDSRR 255 (486)
T ss_dssp HHHHHHHHHH-TTSE--EEEEEEETT-THHHHHHHHHHHHCT---S-----EEEEEEE-BESESE-S-S-EEEEB--HHH
T ss_pred HHHHHHHHHhCCCCc--ccCccccccHHHHHHHHHHHHhcCCCCCC-----EEEEEecccccccccc-hhHHhhhhhHHH
Confidence 467999999999987 4777 3332 2334444433332 3799999853211000 00001111111
Q ss_pred --HHHHhhhhhhhh---cCCceEEeecccCCCCC-CcCchHHHHHH-HHHHHhC-C--cc-eEeeeccceEeeecccc--
Q 019432 73 --DNVMRLSGFLLE---QGWPLFVSEFGADLRGN-NVNDNRYLNCF-FGVAAEL-D--WD-WALWTLVGSYYLREGVI-- 139 (341)
Q Consensus 73 --~~l~~~~gfll~---~~~Pl~isEFG~~~~g~-~~~d~~w~~~l-~~yl~e~-~--i~-Wa~W~l~GsYy~R~g~~-- 139 (341)
..+...-..+.+ -..|+.++||....... ...|..|..++ +.++.++ + ++ ..||++.--|-- .+.+
T Consensus 256 ~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee-~~~~~~ 334 (486)
T PF01229_consen 256 LFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEE-NGTPRK 334 (486)
T ss_dssp HHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---T-TSS-SS
T ss_pred HHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhc-cCCCCC
Confidence 222222122222 24789999999865433 33466666664 3424332 2 44 789999532211 1111
Q ss_pred CCCceeeccccCCCcccchhH
Q 019432 140 GLNEYYGLFDWNWCDIRNSSF 160 (341)
Q Consensus 140 ~~dEt~GLl~~dW~t~rn~~~ 160 (341)
-.--.+||++.+ ..+-|.|
T Consensus 335 pf~ggfGLlt~~--gI~KPa~ 353 (486)
T PF01229_consen 335 PFHGGFGLLTKL--GIPKPAY 353 (486)
T ss_dssp SSSS-S-SEECC--CEE-HHH
T ss_pred ceecchhhhhcc--CCCchHH
Confidence 123458888887 5666664
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=66.65 E-value=14 Score=36.40 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.6
Q ss_pred CceEEeecccCCCCCCc--------CchHHHHHHHHHHHhCCcceEe
Q 019432 87 WPLFVSEFGADLRGNNV--------NDNRYLNCFFGVAAELDWDWAL 125 (341)
Q Consensus 87 ~Pl~isEFG~~~~g~~~--------~d~~w~~~l~~yl~e~~i~Wa~ 125 (341)
.|+||+|=|.+-+|..+ +...+++.++.-|++.|++-++
T Consensus 232 k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fv 278 (305)
T COG5309 232 KTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFV 278 (305)
T ss_pred ccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEE
Confidence 89999999998876432 2358899999999999998664
No 22
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=7.2 Score=40.31 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=50.8
Q ss_pred CCCcceeeecCC--CCceeeecCCCCC-Cceee-CCceeEeeccceeeeeccCCCccEEecccCCC--CCceEEEe
Q 019432 188 PATGLCVQRKSF--LDPLTLGPCTESE-AWSYT-PHKTISLKGAYFCLQAKHVGKPAKLGIICTDC--GSTWEIIS 257 (341)
Q Consensus 188 p~tG~Cv~~~~~--~~~l~l~~C~~~~-~W~~~-~~~~l~l~~~~~CL~a~g~G~~~~l~~~C~~~--~s~W~~~s 257 (341)
.+.++|+.+.++ +.++.|-.|+..+ +|... ..+.|.-.++.+||+..-.|.-..-...|.+. .|+|++..
T Consensus 480 ~~~elCL~v~~~~pg~~v~l~~C~~~e~~q~~v~~~~~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 480 THRELCLAVGSNTPGSPVALVPCGNNETKQRWVELGGHLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred HHHhhhheeecCCCCCeEEEEecCCCCCceEEEecCCchhcccccceeccccCCCcceeecccccccccceeeeeh
Confidence 467899999664 3679999999984 44443 33356666699999988888755445789955 48999865
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=58.74 E-value=19 Score=34.43 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=12.3
Q ss_pred cCCceEEeecccCCCC
Q 019432 85 QGWPLFVSEFGADLRG 100 (341)
Q Consensus 85 ~~~Pl~isEFG~~~~g 100 (341)
...|++++|||..+-.
T Consensus 197 ~~kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 197 PDKPIIISEYGADAYN 212 (298)
T ss_dssp CTS-EEEEEESEBBSS
T ss_pred CCCCeEehhccccccc
Confidence 5689999999997643
No 24
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.29 E-value=22 Score=36.84 Aligned_cols=110 Identities=18% Similarity=0.348 Sum_probs=68.0
Q ss_pred ceeecc--ccCCCcccchhH---HHHhhcccCCCCCCCCcCCCceeeeec-------CCCcceeeecCCCCceeeecCCC
Q 019432 143 EYYGLF--DWNWCDIRNSSF---LERISSLQSPFRGPGVFETGLHKVIYH-------PATGLCVQRKSFLDPLTLGPCTE 210 (341)
Q Consensus 143 Et~GLl--~~dW~t~rn~~~---l~rl~~l~~~~~~p~~~~~~~~~~i~h-------p~tG~Cv~~~~~~~~l~l~~C~~ 210 (341)
+.|-++ |.||-..|+..- +++++..-+-+-+-+.--....+.+|- ..--+|+...+. .+.+..|+.
T Consensus 470 ~~yP~lP~N~~WGE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl~qge~CltAdg~--~i~~~hC~l 547 (603)
T KOG3737|consen 470 SHYPLLPKNVDWGEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLMQGEQCLTADGS--KIMITHCNL 547 (603)
T ss_pred hcCCCCCCCCcchhccCcccchhHHhcCCCCCCccccccccCCCCceEEEeccccchhccceeeecCCc--eEEEEEeec
Confidence 345554 779988887664 556554443222211110011233332 233458876332 389999999
Q ss_pred CC---Cceee-CCceeEeeccceeeeeccCCCccEEecccC--CCCCceEE
Q 019432 211 SE---AWSYT-PHKTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEI 255 (341)
Q Consensus 211 ~~---~W~~~-~~~~l~l~~~~~CL~a~g~G~~~~l~~~C~--~~~s~W~~ 255 (341)
++ .|+|. ..+.+.-.-.++||+.-..+..+.| -.|. ...|+|.+
T Consensus 548 gtv~g~WqY~~~tk~~~H~~~~kC~~~se~~~qv~l-~~Cd~~~~~Qkw~~ 597 (603)
T KOG3737|consen 548 GTVKGEWQYFKNTKRFTHIPSGKCLDRSEVLHQVFL-SNCDSSKTTQKWEM 597 (603)
T ss_pred ccccCceehhhcchheeeccccccccccchhheeee-cccCCCchhheeeh
Confidence 95 89997 4445555558899999999999999 4576 45688975
No 25
>PRK10150 beta-D-glucuronidase; Provisional
Probab=49.12 E-value=1.5e+02 Score=31.64 Aligned_cols=66 Identities=18% Similarity=0.412 Sum_probs=34.0
Q ss_pred CCceEEeecccCCCC------CCcCchHH----HHHHHHHHHhCC--cceEeeeccceEeeeccc-cCCCceeeccccCC
Q 019432 86 GWPLFVSEFGADLRG------NNVNDNRY----LNCFFGVAAELD--WDWALWTLVGSYYLREGV-IGLNEYYGLFDWNW 152 (341)
Q Consensus 86 ~~Pl~isEFG~~~~g------~~~~d~~w----~~~l~~yl~e~~--i~Wa~W~l~GsYy~R~g~-~~~dEt~GLl~~dW 152 (341)
..|++++|||++... .......| +....+.++++. ++-++|.+. .|..-.|. +-.++.-||+..|=
T Consensus 501 ~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~-D~~~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 501 HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFA-DFATSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEEeee-ccCCCCCCcccCCCcceeEcCCC
Confidence 689999999964321 11112233 444444555544 566677753 12111111 11235678887764
No 26
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=46.87 E-value=13 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.8
Q ss_pred ChhHHHHHHhcCCCcEEEEcCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGL 22 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~ 22 (341)
|++.++.|++++||++|||+-=
T Consensus 75 ~~~~~~~i~~~~PDvlVIispD 96 (328)
T cd07366 75 LDRLADFIRAARIDVAVIVGDD 96 (328)
T ss_pred HHHHHHHHHHhCCCEEEEEcCc
Confidence 6789999999999999999863
No 27
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=44.85 E-value=15 Score=36.83 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.2
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLN 23 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~ 23 (341)
|++.++.|++++||++|||+-=.
T Consensus 77 ~~~~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 77 IERMRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCc
Confidence 57899999999999999997654
No 28
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=43.54 E-value=24 Score=34.75 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=26.7
Q ss_pred hhhHHHHHHhhhhhhhh----cCCceEEeecccCCCCC---Cc-CchHHHHHHHHHHH
Q 019432 68 CGRVVDNVMRLSGFLLE----QGWPLFVSEFGADLRGN---NV-NDNRYLNCFFGVAA 117 (341)
Q Consensus 68 c~~l~~~l~~~~gfll~----~~~Pl~isEFG~~~~g~---~~-~d~~w~~~l~~yl~ 117 (341)
..++-+..-+.--.+++ ...||+|||-|.+-.|. +. +-..|.+.++.++.
T Consensus 205 y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~ 262 (310)
T PF00332_consen 205 YTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVL 262 (310)
T ss_dssp ESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHh
Confidence 33444433333344443 34699999999998775 22 13578888888777
No 29
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=42.87 E-value=17 Score=35.40 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.9
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++.+||++||++-..+
T Consensus 37 ~~~~~~~v~~~~PDvvVvis~dH~ 60 (278)
T PRK13364 37 FPPVREWLEKVKPDVAVVFYNDHG 60 (278)
T ss_pred HHHHHHHHHHhCCCEEEEECCchH
Confidence 578999999999999999995553
No 30
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=40.57 E-value=19 Score=34.85 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLN 23 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~ 23 (341)
|+++++.|++.+||++|||+...
T Consensus 37 ~~~~~~~v~~~~PD~iVvis~dH 59 (276)
T cd07949 37 FPPVHDWLEKAKPDVAVVFYNDH 59 (276)
T ss_pred HHHHHHHHHHcCCCEEEEECCcH
Confidence 57899999999999999999755
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=40.52 E-value=1.7e+02 Score=28.65 Aligned_cols=107 Identities=12% Similarity=0.227 Sum_probs=64.2
Q ss_pred hhHHHHHHhcCCCcEEEEcCCCCCCCc-----------hhhhcccccccCCCcEEEEeeecCCCCCccccCCCCCcchhh
Q 019432 2 QLGAEAVHAANPEVLVILSGLNFDKDL-----------SFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGR 70 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~~~~~DL-----------s~v~~~Pv~l~~~~KLVYs~H~Y~~s~~~~W~~~~~~~~c~~ 70 (341)
.++-+..|+++|++..++ -+|+..- ..+.++-+ +++ -+=+-.|+-.... ...
T Consensus 159 ~~aF~~A~~~~P~a~L~~--NDy~~~~~~k~~~~~~lv~~l~~~gv--pId-gIG~Q~H~~~~~~------------~~~ 221 (320)
T PF00331_consen 159 ADAFRAAREADPNAKLFY--NDYNIESPAKRDAYLNLVKDLKARGV--PID-GIGLQSHFDAGYP------------PEQ 221 (320)
T ss_dssp HHHHHHHHHHHTTSEEEE--EESSTTSTHHHHHHHHHHHHHHHTTH--CS--EEEEEEEEETTSS------------HHH
T ss_pred HHHHHHHHHhCCCcEEEe--ccccccchHHHHHHHHHHHHHHhCCC--ccc-eechhhccCCCCC------------HHH
Confidence 567889999999999998 3333211 11222211 233 3778888764321 344
Q ss_pred HHHHHHhhhhhhhhcCCceEEeecccCCCCCCc------CchHHHHHHHHHHHhCC----cceEeeecc
Q 019432 71 VVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNV------NDNRYLNCFFGVAAELD----WDWALWTLV 129 (341)
Q Consensus 71 l~~~l~~~~gfll~~~~Pl~isEFG~~~~g~~~------~d~~w~~~l~~yl~e~~----i~Wa~W~l~ 129 (341)
+.+.+++... .+.||.||||-+....... ....+.+.+++.+.++. -+.++|-+.
T Consensus 222 i~~~l~~~~~----~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~ 286 (320)
T PF00331_consen 222 IWNALDRFAS----LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFT 286 (320)
T ss_dssp HHHHHHHHHT----TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSB
T ss_pred HHHHHHHHHH----cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCC
Confidence 5666655433 5799999999997654321 12356667777776666 345667664
No 32
>PLN02899 alpha-galactosidase
Probab=40.40 E-value=21 Score=38.62 Aligned_cols=62 Identities=23% Similarity=0.453 Sum_probs=41.9
Q ss_pred ceeeeeccCCCcc----EEe--cccC-CCCCceEEEecCceEEEeecCCCceeEEeecC-CCceee---eeeEEeCCC
Q 019432 228 YFCLQAKHVGKPA----KLG--IICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDS-SNTIVT---NTCKCLSRD 294 (341)
Q Consensus 228 ~~CL~a~g~G~~~----~l~--~~C~-~~~s~W~~~s~s~~hl~~~~~~~~~lCLd~~~-~~~ivt---~~C~c~~~d 294 (341)
.+||+|-+..+.. +.+ --|. .++|-|+|..+++|+ +.-++||--|.. +..++| +..+-...+
T Consensus 487 ~~c~~~~~~~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~-----~~~sglca~v~~~~~~~~~~~~r~w~a~g~~ 559 (633)
T PLN02899 487 ELCLDASPKQKRTSKDFRSGSFSPCRWDANQMWELNNNGTLI-----SSYSGLCATVNSVVAEVATGGVRSWIATGRK 559 (633)
T ss_pred ChhhccCCCCCcCHhHhhccccCCCCCChhhceeeCCCCCEe-----cCccccceEeeccccccccCceeEEEEcCCC
Confidence 4577777654322 332 3498 899999999999987 336899999984 444444 566654433
No 33
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=39.06 E-value=25 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=22.7
Q ss_pred hhHHHHHHhcCCCcEEEEcCCCCCCCch
Q 019432 2 QLGAEAVHAANPEVLVILSGLNFDKDLS 29 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~~~~~DLs 29 (341)
.+.++.|++.+|+..|+++|..-..+-.
T Consensus 56 ~~~~~~ik~~~p~~~iv~GG~~~t~~p~ 83 (127)
T cd02068 56 LELAKIAKEVLPNVIVVVGGPHATFFPE 83 (127)
T ss_pred HHHHHHHHHHCCCCEEEECCcchhhCHH
Confidence 3568899999999999999998654433
No 34
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.45 E-value=24 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=22.7
Q ss_pred hhHHHHHHhcCCCcEEEEcCCCCCCCchh
Q 019432 2 QLGAEAVHAANPEVLVILSGLNFDKDLSF 30 (341)
Q Consensus 2 ~~ga~aIhaaNPn~LIIVsG~~~~~DLs~ 30 (341)
.+.++.+++.+|+..|+++|..-..+-..
T Consensus 69 ~~l~~~~k~~~p~~~iv~GG~~~t~~~~~ 97 (121)
T PF02310_consen 69 KRLARAIKERNPNIPIVVGGPHATADPEE 97 (121)
T ss_dssp HHHHHHHHTTCTTSEEEEEESSSGHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCchhcChHH
Confidence 35677899999999999999986554443
No 35
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=34.72 E-value=26 Score=33.78 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.7
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++.+||++||++-..+
T Consensus 35 ~~~~~~~v~~~~pD~ivvi~~dH~ 58 (277)
T cd07368 35 YAICAERLAALQVTSVVVIGDDHY 58 (277)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchH
Confidence 578899999999999999995554
No 36
>PLN02998 beta-glucosidase
Probab=34.17 E-value=68 Score=33.76 Aligned_cols=67 Identities=21% Similarity=0.433 Sum_probs=37.8
Q ss_pred cCC-ceEEeecccCCCC-CCcCch---HHHHHHHHHHHh---CC---cceEeeeccceEeeeccccCCCceeeccccCCC
Q 019432 85 QGW-PLFVSEFGADLRG-NNVNDN---RYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 153 (341)
Q Consensus 85 ~~~-Pl~isEFG~~~~g-~~~~d~---~w~~~l~~yl~e---~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~~dW~ 153 (341)
.+. ||+|+|-|....+ +...|. .|++.-+..|.+ .+ ++..+|++.=-|=- ..+...-|||.--|..
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW---~~Gy~~RfGLv~VD~~ 466 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFEL---FGGYERSFGLLYVDFK 466 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhch---hccccCccceEEECCC
Confidence 334 7999999986532 212232 354444444332 33 77999999522210 1123455999988886
Q ss_pred c
Q 019432 154 D 154 (341)
Q Consensus 154 t 154 (341)
+
T Consensus 467 ~ 467 (497)
T PLN02998 467 D 467 (497)
T ss_pred C
Confidence 4
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=33.76 E-value=55 Score=34.01 Aligned_cols=64 Identities=20% Similarity=0.505 Sum_probs=35.7
Q ss_pred ceEEeecccCCCCC-----CcCch---HHHHHHHHHHHh---CC---cceEeeeccceEeeeccccCCCceeeccccCCC
Q 019432 88 PLFVSEFGADLRGN-----NVNDN---RYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 153 (341)
Q Consensus 88 Pl~isEFG~~~~g~-----~~~d~---~w~~~l~~yl~e---~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~~dW~ 153 (341)
||+|+|-|....+. ...|. .|++.-+..|.+ .+ .+..+|++-=-|=-. .+...-|||.--|..
T Consensus 370 pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~---~Gy~~RfGl~~VD~~ 446 (469)
T PRK13511 370 KIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWS---NGYEKRYGLFYVDFE 446 (469)
T ss_pred CEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchh---cCccCccceEEECCC
Confidence 79999999964321 11222 344444433332 44 679999985222111 123445888877776
Q ss_pred c
Q 019432 154 D 154 (341)
Q Consensus 154 t 154 (341)
+
T Consensus 447 ~ 447 (469)
T PRK13511 447 T 447 (469)
T ss_pred c
Confidence 4
No 38
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=33.36 E-value=29 Score=33.60 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.1
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLN 23 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~ 23 (341)
|++.++.|++.+||++||++...
T Consensus 37 ~~~~~~~i~~~~PD~iVvi~~dH 59 (277)
T cd07950 37 YEPVKQWLAEQKPDVLFMVYNDH 59 (277)
T ss_pred HHHHHHHHHHhCCCEEEEEcCcH
Confidence 57889999999999999999544
No 39
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=32.81 E-value=1.2e+02 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=26.9
Q ss_pred CceEEeecccCCCCCCcCchHHHHHHHHHHHhCCcceEeeeccc
Q 019432 87 WPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELDWDWALWTLVG 130 (341)
Q Consensus 87 ~Pl~isEFG~~~~g~~~~d~~w~~~l~~yl~e~~i~Wa~W~l~G 130 (341)
.||++-|||++-+-+..+-..|+--....+.--+.+=.+|++.+
T Consensus 237 ~pV~leefGfsta~g~e~s~ayfiw~~lal~~ggdGaLiwclsd 280 (587)
T COG3934 237 QPVNLEEFGFSTAFGQENSPAYFIWIRLALDTGGDGALIWCLSD 280 (587)
T ss_pred ceeeccccCCcccccccccchhhhhhhhHHhhcCCceEEEEecC
Confidence 79999999997643221222333333334444556778999975
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=31.37 E-value=1.4e+02 Score=31.18 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=38.3
Q ss_pred cCCceEEeecccCCCCC-----CcCc--h-HH----HHHHHHHHHhCC---cceEeeeccceEeeeccccCCCceeeccc
Q 019432 85 QGWPLFVSEFGADLRGN-----NVND--N-RY----LNCFFGVAAELD---WDWALWTLVGSYYLREGVIGLNEYYGLFD 149 (341)
Q Consensus 85 ~~~Pl~isEFG~~~~g~-----~~~d--~-~w----~~~l~~yl~e~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~ 149 (341)
.+.||+|+|-|+...+. ...| + .| ++++.+-+++.+ .+..+|++.--|=-.+| +...-|||.-
T Consensus 367 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G--~y~~RfGl~~ 444 (478)
T PRK09593 367 YQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTG--EMKKRYGFIY 444 (478)
T ss_pred cCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCC--CccCeeceEE
Confidence 45699999999964321 1112 1 34 444444443334 67999999633311111 1345688887
Q ss_pred cCCCc
Q 019432 150 WNWCD 154 (341)
Q Consensus 150 ~dW~t 154 (341)
-|..+
T Consensus 445 VD~~~ 449 (478)
T PRK09593 445 VDRDN 449 (478)
T ss_pred ECCCC
Confidence 77764
No 41
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=30.63 E-value=35 Score=33.44 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLN 23 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~ 23 (341)
|++.++.|++..||.+||++.-.
T Consensus 39 ~~~~~~~i~~~~Pd~IVViSpHw 61 (294)
T cd07372 39 YERARESIEALKPDVLLVHSPHW 61 (294)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc
Confidence 57899999999999999998764
No 42
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=30.11 E-value=1.2e+02 Score=27.07 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=41.9
Q ss_pred eeeeecCCCcceeeecCCCCceeeecCCCC---CCcee--eCCc--eeEeeccceeeeeccCCCc-c--EE-eccc----
Q 019432 182 HKVIYHPATGLCVQRKSFLDPLTLGPCTES---EAWSY--TPHK--TISLKGAYFCLQAKHVGKP-A--KL-GIIC---- 246 (341)
Q Consensus 182 ~~~i~hp~tG~Cv~~~~~~~~l~l~~C~~~---~~W~~--~~~~--~l~l~~~~~CL~a~g~G~~-~--~l-~~~C---- 246 (341)
+-.+..|.+|.|+....++. +..-.|+.. +.|+. +..| +|+=..+++||.+.-.... - .+ ...|
T Consensus 53 ~Vqf~n~~~~~CL~~~~~G~-~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~Cd~~~ 131 (150)
T PF03498_consen 53 YVQFVNPKTGTCLAAYGNGV-FHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPCDKSK 131 (150)
T ss_dssp EEEEEETTTSEEEEEETTCE-EEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE---S-E
T ss_pred EEEEEcCCCCcceeecCCCe-EeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEeeeCCCcC
Confidence 34566699999999955422 444459998 58988 4556 4555558899999876542 2 33 3779
Q ss_pred C-CCCCceEEEe
Q 019432 247 T-DCGSTWEIIS 257 (341)
Q Consensus 247 ~-~~~s~W~~~s 257 (341)
. ...++|-+..
T Consensus 132 ~~~l~~lw~itP 143 (150)
T PF03498_consen 132 EINLDQLWFITP 143 (150)
T ss_dssp EETGGGEEEEE-
T ss_pred CCCHHHcEEEcC
Confidence 1 3345665543
No 43
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=30.05 E-value=36 Score=33.06 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.1
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++.+||++||++....
T Consensus 37 ~~~i~~~v~~~~PDviVvi~sdH~ 60 (279)
T PRK13365 37 YEPVAAWLAEQKADVLVFFYNDHC 60 (279)
T ss_pred HHHHHHHHHHhCCCEEEEEcCchH
Confidence 578999999999999999977664
No 44
>PLN02814 beta-glucosidase
Probab=29.38 E-value=84 Score=33.17 Aligned_cols=65 Identities=18% Similarity=0.540 Sum_probs=35.9
Q ss_pred CceEEeecccCCCC-CCcCch---HHHHHHHHHHHh---CC---cceEeeeccceEeeeccccCCCceeeccccCCCc
Q 019432 87 WPLFVSEFGADLRG-NNVNDN---RYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWCD 154 (341)
Q Consensus 87 ~Pl~isEFG~~~~g-~~~~d~---~w~~~l~~yl~e---~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~~dW~t 154 (341)
-||+|+|-|....+ +...|. .|++.-+..|.+ .+ ++..+|++.=-|=-. .++.--|||.--|..+
T Consensus 388 ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~---~Gy~~RfGLvyVD~~~ 462 (504)
T PLN02814 388 PPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELL---GGYTTSFGMYYVNFSD 462 (504)
T ss_pred CCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEECCCC
Confidence 38999999996432 112222 444444333322 33 679999995222101 1234458888777764
No 45
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.15 E-value=1.3e+02 Score=31.41 Aligned_cols=64 Identities=22% Similarity=0.487 Sum_probs=36.8
Q ss_pred ceEEeecccCCCC----CCcCch---HHHHHHHHHHHh---CC---cceEeeeccceEeeeccccCCCceeeccccCCCc
Q 019432 88 PLFVSEFGADLRG----NNVNDN---RYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWCD 154 (341)
Q Consensus 88 Pl~isEFG~~~~g----~~~~d~---~w~~~l~~yl~e---~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~~dW~t 154 (341)
||+|+|-|+...+ +...|. .|++.-+..|.+ .+ .+..+|++.=-| +-..+...-|||.--|..+
T Consensus 369 pi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~---Ew~~Gy~~RfGLv~VD~~t 445 (467)
T TIGR01233 369 KIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVF---SWSNGYEKRYGLFYVDFDT 445 (467)
T ss_pred CEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh---chhccccCccceEEECCCC
Confidence 6999999997432 111221 455544444433 34 679999995222 1112244558998777764
No 46
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=24.03 E-value=67 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=13.4
Q ss_pred eeeeecCCCcceeee
Q 019432 182 HKVIYHPATGLCVQR 196 (341)
Q Consensus 182 ~~~i~hp~tG~Cv~~ 196 (341)
.+.+|+|.||+.|+|
T Consensus 30 ~k~lfDPETGqYVeV 44 (75)
T PF15232_consen 30 TKTLFDPETGQYVEV 44 (75)
T ss_pred eeeeecCCCCcEEEE
Confidence 578999999999998
No 47
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=23.54 E-value=55 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++.+||++||++...+
T Consensus 37 ~~~~~~~~~~~~pD~vVvi~~dH~ 60 (277)
T cd07364 37 YQPARDWIKKNKPDVAIIVYNDHA 60 (277)
T ss_pred HHHHHHHHHHhCCCEEEEEcCchH
Confidence 578899999999999999976653
No 48
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=23.40 E-value=58 Score=32.53 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.8
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNFD 25 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~~ 25 (341)
|++.++.|++.+||++||+....|.
T Consensus 35 ~~~l~~~v~~~~PD~iVV~~sdH~~ 59 (329)
T cd07369 35 TLKLGRTLTAARPDVIIAFLDDHFE 59 (329)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchh
Confidence 5788999999999999999877764
No 49
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=23.35 E-value=56 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=20.2
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++..|+.+|||+.-..
T Consensus 31 ~~~lg~~l~~~~Pd~IvviS~Hw~ 54 (271)
T cd07373 31 TRQAGKALAASRPDVVLVYSTQWF 54 (271)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCc
Confidence 467888998899999999998744
No 50
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=23.33 E-value=2.7e+02 Score=29.14 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=38.5
Q ss_pred cCCceEEeecccCCCCC-----CcCc--h-HHH----HHHHHHHHhCC---cceEeeeccceEeeeccccC-CCceeecc
Q 019432 85 QGWPLFVSEFGADLRGN-----NVND--N-RYL----NCFFGVAAELD---WDWALWTLVGSYYLREGVIG-LNEYYGLF 148 (341)
Q Consensus 85 ~~~Pl~isEFG~~~~g~-----~~~d--~-~w~----~~l~~yl~e~~---i~Wa~W~l~GsYy~R~g~~~-~dEt~GLl 148 (341)
.+.||+|+|-|....+. ...| + .|+ +++.+-+.+.+ .+..+|++.=-|=-. .+ ...-|||.
T Consensus 366 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~---~G~y~~RfGlv 442 (476)
T PRK09589 366 YQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAG---TGEMKKRYGFI 442 (476)
T ss_pred cCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccccccc---CCccccceeeE
Confidence 45799999999974321 1122 1 344 44444332334 679999985322111 12 34578888
Q ss_pred ccCCCc
Q 019432 149 DWNWCD 154 (341)
Q Consensus 149 ~~dW~t 154 (341)
--|..+
T Consensus 443 ~VD~~~ 448 (476)
T PRK09589 443 YVDKDN 448 (476)
T ss_pred EEcCCC
Confidence 888765
No 51
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=22.66 E-value=2.2e+02 Score=29.75 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=38.3
Q ss_pred cCCceEEeecccCCCCC-----CcCch---HHHHHHHHHHH---hCC---cceEeeeccceEeeeccccC-CCceeeccc
Q 019432 85 QGWPLFVSEFGADLRGN-----NVNDN---RYLNCFFGVAA---ELD---WDWALWTLVGSYYLREGVIG-LNEYYGLFD 149 (341)
Q Consensus 85 ~~~Pl~isEFG~~~~g~-----~~~d~---~w~~~l~~yl~---e~~---i~Wa~W~l~GsYy~R~g~~~-~dEt~GLl~ 149 (341)
.+.||+|+|-|....+. ...|. .|++.-+..|. +.+ .+..+|++.=-|=-. .+ ...-|||.-
T Consensus 364 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~---~G~y~~RfGLv~ 440 (474)
T PRK09852 364 YQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSAS---TGEMSKRYGFVY 440 (474)
T ss_pred cCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccccccc---CCCccceeeeEE
Confidence 55799999999974321 11222 34444333332 234 679999996322111 12 345688988
Q ss_pred cCCCc
Q 019432 150 WNWCD 154 (341)
Q Consensus 150 ~dW~t 154 (341)
-|..+
T Consensus 441 VD~~~ 445 (474)
T PRK09852 441 VDRDD 445 (474)
T ss_pred ECCCC
Confidence 88764
No 52
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=21.83 E-value=62 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.3
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNF 24 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~ 24 (341)
|++.++.|++..||++||++--..
T Consensus 31 ~~~l~~~l~~~~PD~iVIigphH~ 54 (310)
T cd07365 31 FAAARAFVAAFDPELVVLFAPDHY 54 (310)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcc
Confidence 578899999999999999986543
No 53
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=21.74 E-value=2.9e+02 Score=22.88 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=37.3
Q ss_pred cceeeeeccCCCccEEecccCCCCCceEEEecCc--eEEEeecCCCceeEEeecCCCceee
Q 019432 227 AYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSK--MHLSSKADNGTTVCLDVDSSNTIVT 285 (341)
Q Consensus 227 ~~~CL~a~g~G~~~~l~~~C~~~~s~W~~~s~s~--~hl~~~~~~~~~lCLd~~~~~~ivt 285 (341)
+++.|+...+|+....+.+ .++.+.|++.+.+. +.|... ..+-.||+|. .|.+.+
T Consensus 9 ~~~~L~i~~~g~V~gt~~~-~~~~s~~~i~~~~~g~V~i~~~-~s~~YLcmn~--~G~ly~ 65 (122)
T PF00167_consen 9 TGYFLQINPNGTVDGTGDD-NSPYSVFEIHSVGFGVVRIRGV-KSCRYLCMNK--CGRLYG 65 (122)
T ss_dssp TSEEEEEETTSBEEEESST-TSTTGEEEEEEEETTEEEEEET-TTTEEEEEBT--TSBEEE
T ss_pred CCeEEEECCCCeEeCCCCc-CcceeEEEEEeccceEEEEEEe-cceEEEEECC--CCeEcc
Confidence 4788888888875554333 67788999988764 334444 4577899995 455555
No 54
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.40 E-value=64 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.2
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLN 23 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~ 23 (341)
|++.++.|++.+||++|||+.-.
T Consensus 31 l~~~~~~l~~~~Pd~ivvis~dH 53 (268)
T cd07367 31 MAEIGRRVRESRPDVLVVISSDH 53 (268)
T ss_pred HHHHHHHHHHcCCCEEEEEeCch
Confidence 46778889999999999999833
No 55
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=20.90 E-value=67 Score=30.45 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.1
Q ss_pred ChhHHHHHHhcCCCcEEEEcCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGL 22 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~ 22 (341)
|++.++.|.+.+||.+||++.-
T Consensus 33 l~~~~~~l~~~~Pd~ivvis~~ 54 (271)
T cd07359 33 FARIRDRLEAARPDVVVVVGND 54 (271)
T ss_pred HHHHHHHHHHhCCCEEEEEeCc
Confidence 4678889999999999999984
No 56
>TIGR03356 BGL beta-galactosidase.
Probab=20.72 E-value=2.3e+02 Score=29.11 Aligned_cols=67 Identities=22% Similarity=0.488 Sum_probs=40.0
Q ss_pred cCC-ceEEeecccCCCCC----CcCc--h-HHHHHHHHHHHh---CC---cceEeeeccceEeeeccccCCCceeecccc
Q 019432 85 QGW-PLFVSEFGADLRGN----NVND--N-RYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDW 150 (341)
Q Consensus 85 ~~~-Pl~isEFG~~~~g~----~~~d--~-~w~~~l~~yl~e---~~---i~Wa~W~l~GsYy~R~g~~~~dEt~GLl~~ 150 (341)
.+. ||+|+|-|....+. ...| + .|++.-+..|.+ .+ ++..+|++.--|--.+ +...-|||..-
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~---gy~~rfGl~~V 411 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAE---GYSKRFGLVHV 411 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhc---ccccccceEEE
Confidence 444 89999999964221 1112 1 465555554433 34 6799999965443222 24566888877
Q ss_pred CCCc
Q 019432 151 NWCD 154 (341)
Q Consensus 151 dW~t 154 (341)
|..+
T Consensus 412 D~~~ 415 (427)
T TIGR03356 412 DYET 415 (427)
T ss_pred CCCC
Confidence 7764
No 57
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=20.40 E-value=75 Score=30.52 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=20.0
Q ss_pred ChhHHHHHHhcCCCcEEEEcCCCCCC
Q 019432 1 MQLGAEAVHAANPEVLVILSGLNFDK 26 (341)
Q Consensus 1 m~~ga~aIhaaNPn~LIIVsG~~~~~ 26 (341)
|++.++.|.+.+|+.+|||+ ..|-.
T Consensus 34 ~~~~~~~l~~~~Pd~ivviS-~H~~~ 58 (280)
T cd07370 34 LKEIGRRARELGVDTIVVFD-THWLV 58 (280)
T ss_pred HHHHHHHhhHcCCCEEEEEC-CCccc
Confidence 46777788888999999998 66744
Done!