Your job contains 1 sequence.
>019435
MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR
EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP
APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQIL
MVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLES
GEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAA
MAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019435
(341 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150818 - symbol:AT5G08420 species:3702 "Arabi... 717 8.8e-93 3
POMBASE|SPBC25B2.05 - symbol:mis3 "rRNA processing protei... 543 4.5e-67 3
MGI|MGI:1289274 - symbol:Krr1 "KRR1, small subunit (SSU) ... 502 2.9e-60 3
UNIPROTKB|E2R869 - symbol:KRR1 "KRR1 small subunit proces... 504 7.5e-60 3
RGD|1306183 - symbol:Krr1 "KRR1, small subunit (SSU) proc... 503 9.6e-60 3
ASPGD|ASPL0000001309 - symbol:AN5875 species:162425 "Emer... 539 6.9e-57 2
UNIPROTKB|G4N4Y1 - symbol:MGG_06049 "KRR1 small subunit p... 525 1.8e-56 2
UNIPROTKB|F1SGD9 - symbol:KRR1 "KRR1 small subunit proces... 504 5.4e-53 2
UNIPROTKB|Q13601 - symbol:KRR1 "KRR1 small subunit proces... 504 6.9e-53 2
SGD|S000000564 - symbol:KRR1 "Nucleolar protein required ... 518 8.7e-53 2
UNIPROTKB|Q3B7L9 - symbol:KRR1 "KRR1 small subunit proces... 504 1.4e-52 2
ZFIN|ZDB-GENE-060623-10 - symbol:krr1 "KRR1, small subuni... 514 2.3e-52 2
CGD|CAL0001053 - symbol:KRR1 species:5476 "Candida albica... 513 3.7e-52 2
UNIPROTKB|F1N9P9 - symbol:KRR1 "KRR1 small subunit proces... 488 1.4e-50 2
FB|FBgn0020305 - symbol:dbe "dribble" species:7227 "Droso... 475 6.0e-50 2
DICTYBASE|DDB_G0280805 - symbol:DDB_G0280805 "ribosomal R... 472 4.2e-47 2
WB|WBGene00015461 - symbol:C05C8.2 species:6239 "Caenorha... 465 2.9e-46 2
>TAIR|locus:2150818 [details] [associations]
symbol:AT5G08420 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 SMART:SM00322 EMBL:CP002688 GO:GO:0005730
GO:GO:0003723 GO:GO:0030529 GO:GO:0006364 EMBL:AL392174 KO:K06961
OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:AF370282 EMBL:AY142563 IPI:IPI00545754 RefSeq:NP_196459.1
UniGene:At.10143 ProteinModelPortal:Q9FT93 STRING:Q9FT93
PRIDE:Q9FT93 EnsemblPlants:AT5G08420.1 GeneID:830741
KEGG:ath:AT5G08420 TAIR:At5g08420 InParanoid:Q9FT93
PhylomeDB:Q9FT93 ProtClustDB:CLSN2687289 ArrayExpress:Q9FT93
Genevestigator:Q9FT93 Uniprot:Q9FT93
Length = 391
Score = 717 (257.5 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 135/156 (86%), Positives = 144/156 (92%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD+DPNID W +EKFDP WN GM E S+FSTLFPQYREKYLQE WP V+ ALKEYGV+C
Sbjct: 30 WDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVAC 89
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKIGNL
Sbjct: 90 KLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNL 149
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQ
Sbjct: 150 VRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQ 185
Score = 122 (48.0 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 32/94 (34%), Positives = 39/94 (41%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSC--EAEDKT 295
LESGEYF+S RKRDA+F+PPEEP NS ++ED
Sbjct: 280 LESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNANKSEDGK 339
Query: 296 NDVXXXXXXXXXXXXXXXXXXXX-ENINPEEYIA 328
ND+ E +N EEYIA
Sbjct: 340 NDITELTNSLKSKTKELKKQKKTHERVNAEEYIA 373
Score = 118 (46.6 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 177 VQILMVKKELEKDPALANENWDRFLP 202
++ LM+KKELEKDPALANE+WDRFLP
Sbjct: 219 IKTLMMKKELEKDPALANESWDRFLP 244
>POMBASE|SPBC25B2.05 [details] [associations]
symbol:mis3 "rRNA processing protein Mis3" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IMP]
[GO:0032040 "small-subunit processome" evidence=ISO]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322
PomBase:SPBC25B2.05 GO:GO:0007346 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0032040
eggNOG:COG1094 HOGENOM:HOG000116208 KO:K06961 OMA:ALMIKRE
InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:AB030208 PIR:T39981 RefSeq:NP_596073.1
ProteinModelPortal:O74777 STRING:O74777 EnsemblFungi:SPBC25B2.05.1
GeneID:2540544 KEGG:spo:SPBC25B2.05 OrthoDB:EOG40S3QM
NextBio:20801670 Uniprot:O74777
Length = 327
Score = 543 (196.2 bits), Expect = 4.5e-67, Sum P(3) = 4.5e-67
Identities = 104/156 (66%), Positives = 126/156 (80%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E WP V AL ++G++C
Sbjct: 26 WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITC 84
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+ D + CDIIKIGN+
Sbjct: 85 VLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNI 144
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
+RNKERFVKRRQ L+G N TLKALE+LT CYILVQ
Sbjct: 145 LRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQ 180
Score = 105 (42.0 bits), Expect = 4.5e-67, Sum P(3) = 4.5e-67
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 177 VQILMVKKELEKDPALANENWDRFLP 202
++ LM+K+EL KDP LANE+WDRFLP
Sbjct: 213 IKELMIKRELAKDPTLANESWDRFLP 238
Score = 64 (27.6 bits), Expect = 4.5e-67, Sum P(3) = 4.5e-67
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQ 286
+ESGEYFL ++R AFIPPEE S++
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKK 323
>MGI|MGI:1289274 [details] [associations]
symbol:Krr1 "KRR1, small subunit (SSU) processome component,
homolog (yeast)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1289274 GO:GO:0005730
GO:GO:0003723 GO:GO:0030529 EMBL:CH466539 GO:GO:0006364 CTD:11103
eggNOG:COG1094 GeneTree:ENSGT00390000018775 HOGENOM:HOG000116208
HOVERGEN:HBG051924 KO:K06961 OMA:ALMIKRE OrthoDB:EOG4FR0S6
InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:AK030560 EMBL:AK032472 EMBL:AK041854 EMBL:AK146926
EMBL:AK168675 EMBL:AC167231 EMBL:BC089510 EMBL:BC094236
IPI:IPI00223570 IPI:IPI00652012 RefSeq:NP_848725.2 UniGene:Mm.34606
ProteinModelPortal:Q8BGA5 SMR:Q8BGA5 STRING:Q8BGA5
PhosphoSite:Q8BGA5 PaxDb:Q8BGA5 PRIDE:Q8BGA5
Ensembl:ENSMUST00000163048 GeneID:52705 KEGG:mmu:52705
InParanoid:Q3UIG9 NextBio:309373 Bgee:Q8BGA5 Genevestigator:Q8BGA5
GermOnline:ENSMUSG00000063334 Uniprot:Q8BGA5
Length = 380
Score = 502 (181.8 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 96/149 (64%), Positives = 119/149 (79%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQ 185
Score = 81 (33.6 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 177 VQILMVKKELEKDPALANENWDRFLP 202
++ LM+K+EL KD L +++W+RFLP
Sbjct: 218 IKTLMIKRELAKDSELRSQSWERFLP 243
Score = 64 (27.6 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDKTN- 296
L SGEYFL +R+ AFIPP+E EA +T
Sbjct: 281 LASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEASTETKI 340
Query: 297 DV 298
DV
Sbjct: 341 DV 342
>UNIPROTKB|E2R869 [details] [associations]
symbol:KRR1 "KRR1 small subunit processome component"
species:9615 "Canis lupus familiaris" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 SMART:SM00322 GO:GO:0005730 GO:GO:0003723
GO:GO:0030529 GO:GO:0006364 CTD:11103 GeneTree:ENSGT00390000018775
KO:K06961 OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 EMBL:AAEX03009859 RefSeq:XP_851876.1
ProteinModelPortal:E2R869 Ensembl:ENSCAFT00000009137 GeneID:475405
KEGG:cfa:475405 Uniprot:E2R869
Length = 380
Score = 504 (182.5 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
Score = 81 (33.6 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 177 VQILMVKKELEKDPALANENWDRFLP 202
++ LM+K+EL KD L +++W+RFLP
Sbjct: 219 IKTLMIKRELAKDSELRSQSWERFLP 244
Score = 58 (25.5 bits), Expect = 7.5e-60, Sum P(3) = 7.5e-60
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEE 282
L SGEYFL +R+ AFIPP+E
Sbjct: 282 LASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>RGD|1306183 [details] [associations]
symbol:Krr1 "KRR1, small subunit (SSU) processome component,
homolog (yeast)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
SMART:SM00322 RGD:1306183 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0006364 OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 IPI:IPI00947723 Ensembl:ENSRNOT00000005384
UCSC:RGD:1306183 ArrayExpress:D3ZDQ8 Uniprot:D3ZDQ8
Length = 387
Score = 503 (182.1 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 97/149 (65%), Positives = 119/149 (79%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQ 185
Score = 81 (33.6 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 177 VQILMVKKELEKDPALANENWDRFLP 202
++ LM+K+EL KD L +++W+RFLP
Sbjct: 218 IKTLMIKRELAKDSELRSQSWERFLP 243
Score = 58 (25.5 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEE-PSRQ 286
L SGEYFL +R+ AFIPP+E P+ Q
Sbjct: 281 LASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVQ 330
>ASPGD|ASPL0000001309 [details] [associations]
symbol:AN5875 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0032040 "small-subunit processome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IEA] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR004087 SMART:SM00322 GO:GO:0005730
GO:GO:0003723 EMBL:BN001301 GO:GO:0030686 GO:GO:0032040
GO:GO:0000447 HOGENOM:HOG000116208 OMA:ALMIKRE InterPro:IPR024166
PANTHER:PTHR12581 PIRSF:PIRSF006515 EnsemblFungi:CADANIAT00007161
Uniprot:C8UZX9
Length = 358
Score = 539 (194.8 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 107/157 (68%), Positives = 128/157 (81%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
WD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP+V AL+++G++
Sbjct: 11 WDTD-DIDKWKIEEFKPEDNAGGSFAEESSFATLFPKYREVYLKEAWPVVTRALEKHGIA 69
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CDIIKI N
Sbjct: 70 CTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILEDGVACDIIKIRN 129
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VRNKERFVKRRQ ++GP STLKALE+LTG YILVQ
Sbjct: 130 QVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQ 166
Score = 101 (40.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQ-HLVGPNSST 163
I+K R+ +R R V Q +IL Q +K L+ V+ +GP
Sbjct: 124 IIKIRNQVRNKERFVKRRQ--RILGP--QGSTLKALELLTGTYILVQGNTVSAMGPYKGL 179
Query: 164 LKALEILTGC----YILVQI--LMVKKELEKDPALANENWDRFLP 202
+ I+ C + + I LM+K+EL KDP LA+E+WDRFLP
Sbjct: 180 KEVRRIVDDCMANIHPIYHIKELMIKRELAKDPTLAHESWDRFLP 224
Score = 64 (27.6 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDK 294
+ESGEYFLS ++R+ AF+ PEE + E K
Sbjct: 264 IESGEYFLSKEAKERAQKEEVMERQRIKREEKMKEREKAFVAPEELEETEKAKKEKK 320
>UNIPROTKB|G4N4Y1 [details] [associations]
symbol:MGG_06049 "KRR1 small subunit processome component"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004087 SMART:SM00322
GO:GO:0005730 EMBL:CM001233 GO:GO:0003723 GO:GO:0030686
GO:GO:0032040 GO:GO:0000447 KO:K06961 InterPro:IPR024166
PANTHER:PTHR12581 PIRSF:PIRSF006515 RefSeq:XP_003711900.1
ProteinModelPortal:G4N4Y1 EnsemblFungi:MGG_06049T0 GeneID:2683926
KEGG:mgr:MGG_06049 Uniprot:G4N4Y1
Length = 320
Score = 525 (189.9 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 104/156 (66%), Positives = 126/156 (80%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
WD + +ID WKV+ F P N GG E SSF TLFP+YRE YL+++WP+V AL++YG++
Sbjct: 11 WDTE-DIDKWKVDPFTPSDNAGGTFAEESSFMTLFPKYREVYLRQSWPLVTKALEKYGIA 69
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CDIIKI N
Sbjct: 70 TTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGVACDIIKIRN 129
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
LVRNKERF+KRRQ ++GPN STLKALE+LT YILV
Sbjct: 130 LVRNKERFIKRRQRILGPNGSTLKALELLTSTYILV 165
Score = 115 (45.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQ-HLVGPNSST 163
I+K R+L+R R + Q +IL +K L+ + V +GP
Sbjct: 124 IIKIRNLVRNKERFIKRRQ--RILGPNGST--LKALELLTSTYILVHGNTVSAMGPYKGL 179
Query: 164 LKALEILTGCY------ILVQILMVKKELEKDPALANENWDRFLP 202
+ ++ C L++ LMVK+EL KDPALANE+WDRFLP
Sbjct: 180 KEVRRVVEDCMNNVHPIYLIKELMVKRELAKDPALANESWDRFLP 224
Score = 74 (31.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQ 286
+ESGEYFL R+R+ F+PPEEP Q
Sbjct: 264 IESGEYFLGKEAKKRAAETERQEQAKVKKEERKREREKDFVPPEEPGTQ 312
>UNIPROTKB|F1SGD9 [details] [associations]
symbol:KRR1 "KRR1 small subunit processome component"
species:9823 "Sus scrofa" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
SMART:SM00322 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0006364 CTD:11103 GeneTree:ENSGT00390000018775 KO:K06961
OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:CU694568 RefSeq:XP_003126436.1 UniGene:Ssc.51480
Ensembl:ENSSSCT00000000562 GeneID:100523737 KEGG:ssc:100523737
Uniprot:F1SGD9
Length = 375
Score = 504 (182.5 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 32 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 91
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 92 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 151
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 152 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 180
Score = 62 (26.9 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDKTN- 296
L SGEYFL +R+ AFIPP+E EA +T
Sbjct: 276 LASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEASTETKI 335
Query: 297 DV 298
DV
Sbjct: 336 DV 337
>UNIPROTKB|Q13601 [details] [associations]
symbol:KRR1 "KRR1 small subunit processome component
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0006364 EMBL:AC121761 CTD:11103 eggNOG:COG1094
HOGENOM:HOG000116208 HOVERGEN:HBG051924 KO:K06961 OMA:ALMIKRE
OrthoDB:EOG4FR0S6 InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 EMBL:EF010919 EMBL:AK313687 EMBL:AC022507
EMBL:BC005225 EMBL:BC016778 EMBL:BC026107 EMBL:BC033887 EMBL:U55766
IPI:IPI00156032 IPI:IPI00942884 PIR:G02629 RefSeq:NP_008974.5
UniGene:Hs.645517 ProteinModelPortal:Q13601 SMR:Q13601
IntAct:Q13601 MINT:MINT-1464394 STRING:Q13601 PhosphoSite:Q13601
DMDM:50400303 SWISS-2DPAGE:Q13601 PaxDb:Q13601 PRIDE:Q13601
DNASU:11103 Ensembl:ENST00000229214 Ensembl:ENST00000438169
GeneID:11103 KEGG:hsa:11103 UCSC:uc001sxt.3 GeneCards:GC12M075891
H-InvDB:HIX0010835 HGNC:HGNC:5176 HPA:HPA043433 MIM:612817
neXtProt:NX_Q13601 PharmGKB:PA29450 InParanoid:Q13601
PhylomeDB:Q13601 GenomeRNAi:11103 NextBio:42216 PMAP-CutDB:Q13601
ArrayExpress:Q13601 Bgee:Q13601 CleanEx:HS_KRR1
Genevestigator:Q13601 GermOnline:ENSG00000111615 Uniprot:Q13601
Length = 381
Score = 504 (182.5 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
Score = 61 (26.5 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDKTN- 296
L SGEYFL +R+ AFIPP+E EA +T
Sbjct: 282 LASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASTETKI 341
Query: 297 DV 298
DV
Sbjct: 342 DV 343
>SGD|S000000564 [details] [associations]
symbol:KRR1 "Nucleolar protein required for rRNA synthesis
and ribosomal assembly" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0042274 "ribosomal
small subunit biogenesis" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0032040 "small-subunit
processome" evidence=IDA] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 SGD:S000000564 GO:GO:0005730 EMBL:X59720
EMBL:BK006937 GO:GO:0003723 GO:GO:0030686 GO:GO:0032040
GO:GO:0000447 eggNOG:COG1094 GeneTree:ENSGT00390000018775
HOGENOM:HOG000116208 KO:K06961 OMA:ALMIKRE InterPro:IPR024166
PANTHER:PTHR12581 PIRSF:PIRSF006515 OrthoDB:EOG40S3QM EMBL:AY692923
PIR:S19389 RefSeq:NP_009872.1 ProteinModelPortal:P25586
DIP:DIP-1408N IntAct:P25586 MINT:MINT-397054 STRING:P25586
PaxDb:P25586 PeptideAtlas:P25586 EnsemblFungi:YCL059C GeneID:850298
KEGG:sce:YCL059C CYGD:YCL059c NextBio:965673 Genevestigator:P25586
GermOnline:YCL059C Uniprot:P25586
Length = 316
Score = 518 (187.4 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 104/158 (65%), Positives = 122/158 (77%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGV 80
WD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V AL ++ +
Sbjct: 11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNI 69
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
+C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M CD+IKIG
Sbjct: 70 ACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIG 129
Query: 141 NLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
N V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 130 NFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQ 167
Score = 46 (21.3 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 14/45 (31%), Positives = 16/45 (35%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEE 282
+ESGEYFLS +R FI PEE
Sbjct: 264 IESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDFIAPEE 308
>UNIPROTKB|Q3B7L9 [details] [associations]
symbol:KRR1 "KRR1 small subunit processome component
homolog" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005730
GO:GO:0003723 GO:GO:0030529 GO:GO:0006364 EMBL:DAAA02012357
EMBL:BC107550 IPI:IPI00703671 RefSeq:NP_001032908.1
UniGene:Bt.56273 STRING:Q3B7L9 Ensembl:ENSBTAT00000015401
GeneID:513714 KEGG:bta:513714 CTD:11103 eggNOG:COG1094
GeneTree:ENSGT00390000018775 HOGENOM:HOG000116208
HOVERGEN:HBG051924 InParanoid:Q3B7L9 KO:K06961 OMA:ALMIKRE
OrthoDB:EOG4FR0S6 NextBio:20870998 InterPro:IPR024166
PANTHER:PTHR12581 PIRSF:PIRSF006515 Uniprot:Q3B7L9
Length = 382
Score = 504 (182.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
Score = 58 (25.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEE 282
L SGEYFL +R+ AFIPP+E
Sbjct: 282 LASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>ZFIN|ZDB-GENE-060623-10 [details] [associations]
symbol:krr1 "KRR1, small subunit (SSU) processome
component, homolog (yeast)" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR004087 SMART:SM00322 ZFIN:ZDB-GENE-060623-10
GO:GO:0005730 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
GeneTree:ENSGT00390000018775 InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 EMBL:CU694453 IPI:IPI00772719
Ensembl:ENSDART00000125815 Bgee:F1R1V6 Uniprot:F1R1V6
Length = 398
Score = 514 (186.0 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 97/149 (65%), Positives = 121/149 (81%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 55 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 114
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 115 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 174
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 175 VKRRQRLIGPKGSTLKALELLTNCYVMVQ 203
Score = 46 (21.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDKTND 297
L +GE+FL +R AF+PP+E + + N
Sbjct: 299 LATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKEKTAVKKSKPATSENK 358
Query: 298 V 298
+
Sbjct: 359 I 359
>CGD|CAL0001053 [details] [associations]
symbol:KRR1 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0032040 "small-subunit processome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR004087 SMART:SM00322
CGD:CAL0001053 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0006364 EMBL:AACQ01000117 EMBL:AACQ01000116 eggNOG:COG1094
HOGENOM:HOG000116208 KO:K06961 InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 RefSeq:XP_713795.1 RefSeq:XP_713834.1
ProteinModelPortal:Q59W63 STRING:Q59W63 GeneID:3644522
GeneID:3644542 KEGG:cal:CaO19.661 KEGG:cal:CaO19.8277
Uniprot:Q59W63
Length = 358
Score = 513 (185.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 100/158 (63%), Positives = 123/158 (77%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGV 80
WD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V AL ++ +
Sbjct: 11 WDT-PDIDKWALEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKALDKHFI 69
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ CD+IKIG
Sbjct: 70 KCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIACDVIKIG 129
Query: 141 NLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
N V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 130 NFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQ 167
Score = 45 (20.9 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAEDK 294
+ESGEYFL ++R F PEE +N ++K
Sbjct: 264 IESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQERAKDFEAPEEEVYENKLLKKEK 320
>UNIPROTKB|F1N9P9 [details] [associations]
symbol:KRR1 "KRR1 small subunit processome component"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR004087 SMART:SM00322
GO:GO:0005730 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
GeneTree:ENSGT00390000018775 OMA:ALMIKRE InterPro:IPR024166
PANTHER:PTHR12581 PIRSF:PIRSF006515 EMBL:AADN02009807
IPI:IPI00598123 Ensembl:ENSGALT00000016625 Uniprot:F1N9P9
Length = 375
Score = 488 (176.8 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 94/149 (63%), Positives = 119/149 (79%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 33 DGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG+LVRN+E F
Sbjct: 93 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRNRESF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRR L+GP STLKALE+LT CYI+VQ
Sbjct: 153 VKRRGRLLGPKGSTLKALELLTNCYIMVQ 181
Score = 97 (39.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 34/99 (34%), Positives = 49/99 (49%)
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF--VKRRQHLVGPNSST 163
VK R RLL P +K L+ C I+ GN V F +K + +V T
Sbjct: 153 VKRRG--RLLG---PKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVV---LDT 204
Query: 164 LKALEILTGCYILVQILMVKKELEKDPALANENWDRFLP 202
+K + + ++ LM+K+EL KDP L +NW+RFLP
Sbjct: 205 MKNIHPIYN----IKTLMIKRELSKDPELRTQNWERFLP 239
Score = 55 (24.4 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEE 282
L SGEYFL +R+ AFIPP+E
Sbjct: 277 LASGEYFLKESQKKRKRVEEIKAKQADAVKKRQEERNKAFIPPKE 321
>FB|FBgn0020305 [details] [associations]
symbol:dbe "dribble" species:7227 "Drosophila melanogaster"
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
PROSITE:PS50084 SMART:SM00322 GO:GO:0007275 GO:GO:0005654
GO:GO:0005730 EMBL:AE014134 GO:GO:0003723 GO:GO:0030529
GO:GO:0006364 eggNOG:COG1094 GeneTree:ENSGT00390000018775 KO:K06961
OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:Z96931 EMBL:AY069529 RefSeq:NP_477240.1 UniGene:Dm.2087
ProteinModelPortal:Q9VPU8 SMR:Q9VPU8 IntAct:Q9VPU8
MINT:MINT-1588813 STRING:Q9VPU8 PRIDE:Q9VPU8
EnsemblMetazoa:FBtr0078030 GeneID:33269 KEGG:dme:Dmel_CG4258
UCSC:CG4258-RA CTD:33269 FlyBase:FBgn0020305 InParanoid:Q9VPU8
PhylomeDB:Q9VPU8 GenomeRNAi:33269 NextBio:782766 Bgee:Q9VPU8
Uniprot:Q9VPU8
Length = 345
Score = 475 (172.3 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 90/155 (58%), Positives = 121/155 (78%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + E
Sbjct: 14 EPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAE 73
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 74 LDLMEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 133
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 134 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQ 168
Score = 102 (41.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
VK R RL+ + ++I++L D C ++ GN V + K Q + L+
Sbjct: 140 VKRRQ--RLIGPNGATLKSIELLTD---CYVLVQGNTVSALGPY-KGLQQV---RDIVLE 190
Query: 166 ALEILTGCYILVQILMVKKELEKDPALANENWDRFLP 202
+ + Y ++ LM+K+EL KDP LANE+W RFLP
Sbjct: 191 TMNNVHPIYN-IKALMIKRELMKDPRLANEDWSRFLP 226
Score = 62 (26.9 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 238 LESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXXRKRDAAFIPPEEPSRQNSCEAED 293
L SGEYFL+ +R+ F+PP E S +S + ED
Sbjct: 264 LASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKED 319
>DICTYBASE|DDB_G0280805 [details] [associations]
symbol:DDB_G0280805 "ribosomal RNA assembly protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR004087
PROSITE:PS50084 SMART:SM00322 dictyBase:DDB_G0280805 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:COG1094 KO:K06961 InterPro:IPR024166 PANTHER:PTHR12581
PIRSF:PIRSF006515 EMBL:AAFI02000038 RefSeq:XP_641041.1
ProteinModelPortal:Q54UU6 STRING:Q54UU6 EnsemblProtists:DDB0204743
GeneID:8622743 KEGG:ddi:DDB_G0280805 OMA:PSYLESY
ProtClustDB:CLSZ2428997 Uniprot:Q54UU6
Length = 374
Score = 472 (171.2 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 95/152 (62%), Positives = 119/152 (78%)
Query: 29 IDHWK-VE-KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 86
ID WK +E K D + + + SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L
Sbjct: 36 IDPWKPLELKRDDV-GKRVLYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDL 94
Query: 87 VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNK 146
+EGSMTV+TT+K DP I+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNK
Sbjct: 95 IEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNK 154
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
ERFVKRRQ LVGP+ STLKA+E+LT CY+LVQ
Sbjct: 155 ERFVKRRQRLVGPDGSTLKAIELLTKCYVLVQ 186
Score = 38 (18.4 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 238 LESGEYFLS 246
+ESGEYF S
Sbjct: 282 MESGEYFAS 290
>WB|WBGene00015461 [details] [associations]
symbol:C05C8.2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004087 SMART:SM00322 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0005730 GO:GO:0002119 GO:GO:0010171
GO:GO:0003723 GO:GO:0030529 GO:GO:0006364 eggNOG:COG1094
GeneTree:ENSGT00390000018775 HOGENOM:HOG000116208 KO:K06961
OMA:ALMIKRE InterPro:IPR024166 PANTHER:PTHR12581 PIRSF:PIRSF006515
EMBL:FO080353 PIR:T31743 RefSeq:NP_504837.1
ProteinModelPortal:O16311 SMR:O16311 IntAct:O16311 STRING:O16311
PaxDb:O16311 EnsemblMetazoa:C05C8.2.1 EnsemblMetazoa:C05C8.2.2
GeneID:179115 KEGG:cel:CELE_C05C8.2 UCSC:C05C8.2 CTD:179115
WormBase:C05C8.2 InParanoid:O16311 NextBio:903988 Uniprot:O16311
Length = 370
Score = 465 (168.7 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 86/147 (58%), Positives = 119/147 (80%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 45 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 104
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 105 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 164
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 165 RRARLIGNDGATLKALELLTQCYVCVQ 191
Score = 37 (18.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 238 LESGEYFL 245
+ESGEYF+
Sbjct: 294 IESGEYFI 301
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 341 242 0.00096 113 3 11 22 0.47 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 602 (64 KB)
Total size of DFA: 197 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.08u 0.11s 20.19t Elapsed: 00:00:01
Total cpu time: 20.08u 0.11s 20.19t Elapsed: 00:00:01
Start: Sat May 11 15:48:51 2013 End: Sat May 11 15:48:52 2013