BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019435
(341 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544688|ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
Length = 377
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 269/355 (75%), Positives = 290/355 (81%), Gaps = 35/355 (9%)
Query: 19 KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
KPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQE WPMVK A+KEY
Sbjct: 17 KPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEVWPMVKSAIKEY 76
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL DEMQCDIIK
Sbjct: 77 GVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILHDEMQCDIIK 136
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------------- 178
IGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 137 IGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRKIV 196
Query: 179 ---------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT 223
ILM+KKELEKDPAL NENWDRFLPKFKKKNVK KVK KEKKPYT
Sbjct: 197 EDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKVKRKEKKPYT 256
Query: 224 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 283
PFPP QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD AF+PPEE
Sbjct: 257 PFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRDTAFVPPEEH 316
Query: 284 SRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKK 338
Q++ ++EDK NDVAA+A S+K+KAK K+ ENIN EEYIAASGE P KKK
Sbjct: 317 RDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELPKKKK 371
>gi|356501320|ref|XP_003519473.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]
Length = 389
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/365 (72%), Positives = 293/365 (80%), Gaps = 36/365 (9%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKHDKPKPWD+DPNIDHWK+EKFDP WN+GGMLEVSSFSTLFPQYREKYLQEAWPMV
Sbjct: 23 KRKGKHDKPKPWDDDPNIDHWKIEKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMV 82
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K ALKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILDDE
Sbjct: 83 KSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSLPAPQAIKILDDE 142
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------- 178
MQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 143 MQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 202
Query: 179 ----------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV +
Sbjct: 203 KQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNT 262
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+ A
Sbjct: 263 KQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEA 322
Query: 277 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 336
FIPP+EP+ ++ED ++VA MA SLK+K KK K+K ENIN E YI S E+ S
Sbjct: 323 FIPPKEPANLVD-KSEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIGSSEQASG 381
Query: 337 KKKSK 341
KK K
Sbjct: 382 KKSKK 386
>gi|359807638|ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max]
gi|255639399|gb|ACU19995.1| unknown [Glycine max]
Length = 389
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/365 (72%), Positives = 293/365 (80%), Gaps = 36/365 (9%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKHDKPKPWD+DPNIDHWK++KFDP WN+GGMLEVSSFSTLFPQYREKYLQEAWPMV
Sbjct: 23 KRKGKHDKPKPWDDDPNIDHWKIDKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMV 82
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K +LKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILDDE
Sbjct: 83 KSSLKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSIPAPQAIKILDDE 142
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------- 178
MQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 143 MQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 202
Query: 179 ----------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV +
Sbjct: 203 KQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNT 262
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+ A
Sbjct: 263 KQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEA 322
Query: 277 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 336
FIPP+EP+ ++ED N+VA MA SLK+K KK K+K ENI+ E YI S E+ S
Sbjct: 323 FIPPKEPANLVD-KSEDANNNVADMAISLKKKTKKFGKRKSEENIDAETYIVGSSEQASG 381
Query: 337 KKKSK 341
KK K
Sbjct: 382 KKPKK 386
>gi|224094246|ref|XP_002310107.1| predicted protein [Populus trichocarpa]
gi|222853010|gb|EEE90557.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 259/371 (69%), Positives = 291/371 (78%), Gaps = 41/371 (11%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
++ T KHKGKHDKPKPWDEDPNID WK+EKFDP WN+GGM++VSSFSTLFP+YREKY
Sbjct: 10 DISNTKKPKHKGKHDKPKPWDEDPNIDRWKIEKFDPSWNQGGMVDVSSFSTLFPKYREKY 69
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
L +AWPMVK ALKE+G+ CELN EGSMTV TT KTRDPYIIVKARDLI+LLSRSVPAPQ
Sbjct: 70 LTDAWPMVKSALKEFGIDCELNKNEGSMTVKTTIKTRDPYIIVKARDLIKLLSRSVPAPQ 129
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----- 178
AIKIL+D+M CDIIKIGN++RNKERFVKRRQ+LVGPNSSTLKALE+LTGCYILVQ
Sbjct: 130 AIKILNDDMSCDIIKIGNMIRNKERFVKRRQNLVGPNSSTLKALELLTGCYILVQGNTVA 189
Query: 179 ------------------------------ILMVKKELEKDPALANENWDRFLPKFKKKN 208
ILM+KKELEKDPAL NENWDRFLPK+KKK
Sbjct: 190 AMGSFKGLKQVRRIVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLPKYKKKT 249
Query: 209 VKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
VKQKKVKSK+KK TPFPPP QPS D LE+GEYFLS++KK++KKW EKQEKQ EKTAE
Sbjct: 250 VKQKKVKSKKKKQDTPFPPPQQPSMEDIQLETGEYFLSDKKKQAKKWHEKQEKQLEKTAE 309
Query: 269 NKRKRDAAFIPP-EEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYI 327
NKRKRDAAF+PP E+PS D DVAAMA SLK+KAK+ KQK EN+NPE+YI
Sbjct: 310 NKRKRDAAFVPPKEDPS-----TYADNNKDVAAMAMSLKKKAKEFGKQKSFENVNPEDYI 364
Query: 328 AASGEKPSKKK 338
A SGE+P KKK
Sbjct: 365 ATSGEQPRKKK 375
>gi|357493549|ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355518398|gb|AET00022.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 424
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/342 (72%), Positives = 274/342 (80%), Gaps = 36/342 (10%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD+DPNIDHWKVEKFDP WNE GMLEVSSFSTLFPQYREKYLQEAWP+VK +LKE+G+S
Sbjct: 69 WDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISA 128
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LDDEMQCDIIKI L
Sbjct: 129 ELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGL 188
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------ 178
VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 189 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECM 248
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 227
ILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV +K KKPYTPFPP
Sbjct: 249 LNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPP 308
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
P QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD +F+PP+EP+
Sbjct: 309 PQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANL- 367
Query: 288 SCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 329
+ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 368 VGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 409
>gi|218184655|gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
Length = 395
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/361 (68%), Positives = 291/361 (80%), Gaps = 38/361 (10%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+HKGKHDKPKPWD+DPNIDHWK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP+V
Sbjct: 25 RHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPIV 84
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
KGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DE
Sbjct: 85 KGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDE 144
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------------ 179
M CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 145 MSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGL 204
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +
Sbjct: 205 KQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPIT 264
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AA
Sbjct: 265 KEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAA 324
Query: 277 FIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEK 333
F+PP+E + S ++ +++A MAKSLK+KAK+LRK + EN+ E Y+A++ G +
Sbjct: 325 FVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKELRKSEAQENVRLESYVASNEGSR 384
Query: 334 P 334
P
Sbjct: 385 P 385
>gi|388504376|gb|AFK40254.1| unknown [Medicago truncatula]
Length = 380
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/342 (72%), Positives = 274/342 (80%), Gaps = 36/342 (10%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD+DPNIDHWKVEKFDP WNE GMLEVSSFSTLFPQYREKYLQEAWP+VK +LKE+G+S
Sbjct: 25 WDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISA 84
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LDDEMQCDIIKI L
Sbjct: 85 ELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGL 144
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------ 178
VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 145 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECM 204
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 227
ILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV +K KKPYTPFPP
Sbjct: 205 LNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPP 264
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
P QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD +F+PP+EP+
Sbjct: 265 PQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANLV 324
Query: 288 SCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 329
+ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 325 G-NSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 365
>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group]
Length = 395
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/361 (68%), Positives = 290/361 (80%), Gaps = 38/361 (10%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+HKGKHDKPKPWD+DPNIDHWK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP+V
Sbjct: 25 RHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPIV 84
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
KGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DE
Sbjct: 85 KGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDE 144
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------------ 179
M CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 145 MSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGL 204
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +
Sbjct: 205 KQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPIT 264
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AA
Sbjct: 265 KEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAA 324
Query: 277 FIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEK 333
F+PP+E + S ++ +++A MAKSLK+KAK+ RK + EN+ E Y+A++ G +
Sbjct: 325 FVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEGSR 384
Query: 334 P 334
P
Sbjct: 385 P 385
>gi|296083097|emb|CBI22501.3| unnamed protein product [Vitis vinifera]
Length = 424
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 270/365 (73%), Positives = 295/365 (80%), Gaps = 36/365 (9%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 48 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 106
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
QEAWP V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQA
Sbjct: 107 QEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQA 166
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------ 178
IKIL+DEMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 167 IKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 226
Query: 179 -----------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL DPAL NENWDRFLPKFKKKNV
Sbjct: 227 MGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNV 286
Query: 210 KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 269
KQKKVKSKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EKQAEKTAEN
Sbjct: 287 KQKKVKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAEN 346
Query: 270 KRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 329
KRKR+AAF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE YIAA
Sbjct: 347 KRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAA 406
Query: 330 SGEKP 334
SGE P
Sbjct: 407 SGEAP 411
>gi|225429319|ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
vinifera]
Length = 386
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 270/365 (73%), Positives = 295/365 (80%), Gaps = 36/365 (9%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 10 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 68
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
QEAWP V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQA
Sbjct: 69 QEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQA 128
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------ 178
IKIL+DEMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ
Sbjct: 129 IKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 188
Query: 179 -----------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL DPAL NENWDRFLPKFKKKNV
Sbjct: 189 MGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNV 248
Query: 210 KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 269
KQKKVKSKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EKQAEKTAEN
Sbjct: 249 KQKKVKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAEN 308
Query: 270 KRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 329
KRKR+AAF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE YIAA
Sbjct: 309 KRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAA 368
Query: 330 SGEKP 334
SGE P
Sbjct: 369 SGEAP 373
>gi|449493026|ref|XP_004159171.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 379
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/365 (72%), Positives = 294/365 (80%), Gaps = 36/365 (9%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
KHKGKHDKPKPWDEDPNID WKVEKFDP WNE GMLEVSSFSTLFP YREKYL++ WP+V
Sbjct: 13 KHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYREKYLRDTWPVV 72
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K ALKE+G+ ELNL+EGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILDDE
Sbjct: 73 KSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDE 132
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------- 178
MQCDIIKIGNLVR KERFVKRR+ LVGPNSSTLKALEILTGCYILVQ
Sbjct: 133 MQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 192
Query: 179 ----------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
ILM++KEL DPALANENWDRFLPKFKKK VKQKKVKS
Sbjct: 193 KQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKVKS 252
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
K KK YTPFPPP QPS+ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+AA
Sbjct: 253 KPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKREAA 312
Query: 277 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 336
F+PP+E +Q++ DK ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P
Sbjct: 313 FVPPKEAPKQDTKPDGDK-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRPLF 371
Query: 337 KKKSK 341
KK+SK
Sbjct: 372 KKRSK 376
>gi|414880761|tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 391
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/364 (66%), Positives = 287/364 (78%), Gaps = 43/364 (11%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDKPKPWDEDPNID WK++KFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP
Sbjct: 17 NWRRKGKHDKPKPWDEDPNIDRWKIDKFDPAWNEGGMLEVSSFSTLFPQYREKYLQEAWP 76
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILD
Sbjct: 77 VVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILD 136
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------- 179
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 137 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 196
Query: 180 ---------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
L++K+EL K+PALANENWDRFLPKFKKKNVKQK
Sbjct: 197 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQK 256
Query: 213 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRK
Sbjct: 257 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRK 316
Query: 273 RDAAFIPPEE----PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIA 328
R+AAF+PP+E PS+ + +++ +++A +AKSLK KAK+ RK + E++ E YIA
Sbjct: 317 REAAFVPPKENTAGPSKSDKNASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIA 374
Query: 329 ASGE 332
++ E
Sbjct: 375 SNDE 378
>gi|357136153|ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 393
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/360 (65%), Positives = 275/360 (76%), Gaps = 37/360 (10%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDK KPWD DP ID WKVE+FDP WNEGGMLEV+SFSTLFPQYREKYLQEAWP
Sbjct: 22 NWRRKGKHDKDKPWDNDPTIDRWKVERFDPSWNEGGMLEVTSFSTLFPQYREKYLQEAWP 81
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
VKGALKE+G++CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIK+L+
Sbjct: 82 TVKGALKEFGITCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKVLN 141
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------- 179
DEM CDI+KIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 142 DEMNCDIVKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSFK 201
Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 214
L++K+EL K+PALA E+WDRFLP FKKKNVKQKK
Sbjct: 202 GLKQVRRIVEDCIKNIKHPVYHIKELLIKRELAKNPALATESWDRFLPNFKKKNVKQKKP 261
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
+KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK +KQ+EK E KRKR+
Sbjct: 262 NTKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLDKQSEKMEEKKRKRE 321
Query: 275 AAFIPPEEPSR--QNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 332
AAF+PP+E S S + N++A + KSLK KAKK R + EN+ + YIA + E
Sbjct: 322 AAFVPPKENSAGPSESAKPTHAKNEIADITKSLKNKAKKFRNSEAQENVKVDSYIATNEE 381
>gi|297806883|ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
gi|297317162|gb|EFH47584.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/379 (68%), Positives = 294/379 (77%), Gaps = 42/379 (11%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREK 62
+N+EK V + KGKHDKPKPWD+DPNID W +EKFDP WN GMLE SSFSTLFPQYREK
Sbjct: 12 QNIEKRV--RQKGKHDKPKPWDDDPNIDRWTIEKFDPAWNPTGMLETSSFSTLFPQYREK 69
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YLQE+WP V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAP
Sbjct: 70 YLQESWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAP 129
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ---- 178
QAIKIL+DEMQCDIIKIG+LVRNK+RFVKRRQ LVGPNSSTLKALEILT CYILVQ
Sbjct: 130 QAIKILEDEMQCDIIKIGSLVRNKQRFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTV 189
Query: 179 -------------------------------ILMVKKELEKDPALANENWDRFLPKFKKK 207
LM+KKELEKDPALANE+WDRFLP F+KK
Sbjct: 190 AAMGPFKGLKQLRRIVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKK 249
Query: 208 NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 267
NVKQKK KSKEKKPYTPFPPP PSKID LESGEYF+S++KK KKW EKQEKQ EK+
Sbjct: 250 NVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWLEKQEKQTEKST 309
Query: 268 ENKRKRDAAFIPPEEPSRQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPE 324
ENKRKRDA+F+PPEEP NS +ED ND+ + +SLK K K+L+KQK E +N E
Sbjct: 310 ENKRKRDASFLPPEEPMNNNSKANNSEDGKNDITELTQSLKSKTKELKKQKKTHERVNAE 369
Query: 325 EYIA--ASGEKPSKKKKSK 341
EYIA +S +KP+K+K K
Sbjct: 370 EYIAGPSSIDKPAKEKSKK 388
>gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group]
gi|125571797|gb|EAZ13312.1| hypothetical protein OsJ_03235 [Oryza sativa Japonica Group]
Length = 421
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/394 (60%), Positives = 286/394 (72%), Gaps = 66/394 (16%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQI-----------------------------------LMVKKELEK 188
LKA+EILTGCYILVQ L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVK 259
Query: 189 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 248
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 249 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 306
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A MAKSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMAKSLK 379
Query: 307 EKAKKLRKQKFAENINPEEYIAAS-GEKPSKKKK 339
+KAK+LRK + EN+ E Y+A++ G +P KK K
Sbjct: 380 KKAKELRKNEEQENVRLESYVASNEGSRPKKKHK 413
>gi|125527474|gb|EAY75588.1| hypothetical protein OsI_03494 [Oryza sativa Indica Group]
Length = 421
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/394 (59%), Positives = 285/394 (72%), Gaps = 66/394 (16%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQI-----------------------------------LMVKKELEK 188
LKA+EILTGCYILVQ L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELAK 259
Query: 189 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 248
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 249 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 306
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A M KSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMEKSLK 379
Query: 307 EKAKKLRKQKFAENINPEEYIAAS-GEKPSKKKK 339
+KAK+LRK + EN+ E Y+A++ G +P KK K
Sbjct: 380 KKAKELRKNEEQENVRLESYVASNEGSRPKKKHK 413
>gi|242054199|ref|XP_002456245.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
gi|241928220|gb|EES01365.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
Length = 351
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/306 (72%), Positives = 247/306 (80%), Gaps = 37/306 (12%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDKPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP
Sbjct: 24 NWRRKGKHDKPKPWDEDPNIDRWKIEKFDPAWNEGGMLEVSSFSTLFPQYREKYLQEAWP 83
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+IIVKAR+LI+LLSRSVPAPQAIKILD
Sbjct: 84 LVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFIIVKARELIKLLSRSVPAPQAIKILD 143
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------- 179
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 144 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 203
Query: 180 ---------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
L++K+EL K+PALA E+WDRFLPKFKKKNVKQK
Sbjct: 204 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALATESWDRFLPKFKKKNVKQK 263
Query: 213 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK EKQ+ + ENKRK
Sbjct: 264 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLEKQSGRAEENKRK 323
Query: 273 RDAAFI 278
R+ F+
Sbjct: 324 RETFFV 329
>gi|449444252|ref|XP_004139889.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 350
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/348 (70%), Positives = 276/348 (79%), Gaps = 36/348 (10%)
Query: 29 IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVE 88
+ WKVEKFDP WNE GMLEVSSFSTLFP YREKYL++ WP+VK ALKE+G+ ELNL+E
Sbjct: 1 MTSWKVEKFDPSWNEAGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGIVGELNLIE 60
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
GSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILDDEMQCDIIKIGNLVR KER
Sbjct: 61 GSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKER 120
Query: 149 FVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------ 178
FVKRR+ LVGPNSSTLKALEILTGCYILVQ
Sbjct: 121 FVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEECMMNKMHP 180
Query: 179 -----ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 233
ILM++KEL DPALANENWDRFLPKFKKK VKQKKVKSK KK YTPFPPP QPS+
Sbjct: 181 VYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKVKSKPKKQYTPFPPPQQPSQ 240
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+AAF+PP+E +Q++ D
Sbjct: 241 IDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKREAAFVPPKEAPKQDTKPDGD 300
Query: 294 KTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 341
K ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P KK+SK
Sbjct: 301 K-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRPLFKKRSK 347
>gi|297720351|ref|NP_001172537.1| Os01g0713700 [Oryza sativa Japonica Group]
gi|255673619|dbj|BAH91267.1| Os01g0713700 [Oryza sativa Japonica Group]
Length = 461
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/374 (61%), Positives = 273/374 (72%), Gaps = 65/374 (17%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQI-----------------------------------LMVKKELEK 188
LKA+EILTGCYILVQ L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVK 259
Query: 189 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 248
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 249 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 306
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A MAKSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMAKSLK 379
Query: 307 EKAKKLRKQKFAEN 320
+KAK+LRK + EN
Sbjct: 380 KKAKELRKNEEQEN 393
>gi|15241622|ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|13878039|gb|AAK44097.1|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|10178284|emb|CAC08342.1| rev interacting protein mis3-like [Arabidopsis thaliana]
gi|23296614|gb|AAN13132.1| putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|332003916|gb|AED91299.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 391
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 271/348 (77%), Gaps = 38/348 (10%)
Query: 20 PKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYG 79
PKPWD+DPNID W +EKFDP WN GM E S+FSTLFPQYREKYLQE WP V+ ALKEYG
Sbjct: 27 PKPWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYG 86
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
V+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKI
Sbjct: 87 VACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKI 146
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------------- 178
GNLVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQ
Sbjct: 147 GNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVE 206
Query: 179 --------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTP 224
LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK KSKEKKPYTP
Sbjct: 207 DCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTP 266
Query: 225 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
FPPP PSKID LESGEYF+S++KK KKWQEKQEKQ+EK+ ENKRKRDA+F+PPEEP
Sbjct: 267 FPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPM 326
Query: 285 RQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 329
NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 327 NNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|21592614|gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
Length = 391
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 244/348 (70%), Positives = 270/348 (77%), Gaps = 38/348 (10%)
Query: 20 PKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYG 79
PKPWD+DPNID W +EKFDP WN GM E S+FSTLFPQYREKYLQE WP V+ ALKEYG
Sbjct: 27 PKPWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYG 86
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
V+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKI
Sbjct: 87 VACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKI 146
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------------- 178
GNLVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQ
Sbjct: 147 GNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVE 206
Query: 179 --------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTP 224
LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK KSKEKKPYTP
Sbjct: 207 DCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTP 266
Query: 225 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
FPPP PSKID LESGEYF+ ++KK KKWQEKQEKQ+EK+ ENKRKRDA+F+PPEEP
Sbjct: 267 FPPPQPPSKIDMQLESGEYFMRDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPM 326
Query: 285 RQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 329
NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 327 NNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|302795356|ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
gi|300152689|gb|EFJ19330.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
Length = 373
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/352 (60%), Positives = 259/352 (73%), Gaps = 42/352 (11%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD P++DHWK+ W+ G++E SSFSTLFPQYREKYLQ+ W V
Sbjct: 27 KGKHDKPKPWDT-PDVDHWKIVPKPEQWS--GLVEQSSFSTLFPQYREKYLQDVWHSVAR 83
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE+G+ ELNLVEGSMTV+TTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D MQ
Sbjct: 84 ALKEHGIKGELNLVEGSMTVTTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILEDYMQ 143
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQ
Sbjct: 144 CDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQGLKT 203
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K KEK
Sbjct: 204 LRRVVEDCIHNIHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKSKKEK 262
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
KPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD++F+P
Sbjct: 263 KPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDSSFVP 322
Query: 280 PEEPSRQNSCEAEDKTN--DVAAMAKSLKEKAKK-LRKQKFAENINPEEYIA 328
P+E + + DV AMA++LKEK++K L KQK ++ + + Y+A
Sbjct: 323 PKETKKSERAGTSSGVSKADVTAMAQNLKEKSEKVLPKQKRIDD-SVQNYLA 373
>gi|302792240|ref|XP_002977886.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
gi|300154589|gb|EFJ21224.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
Length = 347
Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 197/301 (65%), Positives = 230/301 (76%), Gaps = 38/301 (12%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD P++DHWK+ W+ G++E SSFSTLFPQYREKYLQ+ W V
Sbjct: 27 KGKHDKPKPWD-TPDVDHWKIVPKPEQWS--GLVEQSSFSTLFPQYREKYLQDVWHSVAR 83
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE+G+ ELNLVEGSMTVSTTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D MQ
Sbjct: 84 ALKEHGIKGELNLVEGSMTVSTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILEDYMQ 143
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQ
Sbjct: 144 CDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQGLKT 203
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K KEK
Sbjct: 204 LRRVVEDCIHNIHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKSKKEK 262
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
KPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD++F+P
Sbjct: 263 KPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDSSFVP 322
Query: 280 P 280
P
Sbjct: 323 P 323
>gi|308806503|ref|XP_003080563.1| rRNA processing protein (ISS) [Ostreococcus tauri]
gi|116059023|emb|CAL54730.1| rRNA processing protein (ISS) [Ostreococcus tauri]
Length = 419
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/364 (54%), Positives = 242/364 (66%), Gaps = 43/364 (11%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KG++ + KPWD D IDHW+V+ F N G+LE SSF+ LFP+YREKYL+E WP V
Sbjct: 42 KGRYRRDKPWDHD-GIDHWRVDPFTAEDNPHGVLEESSFAVLFPKYREKYLREVWPSVTR 100
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE GVSCELNLVEGSMTV TTRKT DPYIIVKARDLI+LLSRSVPAPQA+K+LDD+
Sbjct: 101 ALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIVKARDLIKLLSRSVPAPQALKVLDDDTN 160
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQ
Sbjct: 161 CDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGGWKGLKT 220
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+ELEKDP LA ++WDRFLPKFKKKNV++KK + K
Sbjct: 221 VRKIVEDAMKNTHPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRKKPQKVGK 280
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K FPP SK+D +ESGEYFLS+ KE K +K +KQ + EN++KR AF+
Sbjct: 281 KERAVFPPAQPMSKVDMQIESGEYFLSKEAKERKAAYDKLQKQKNVSTENQKKRLEAFVA 340
Query: 280 PEE---PSRQNSCEA-EDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPS 335
P+E P R + EA E+ NDVAA SLK K+ K RK++ + + G K S
Sbjct: 341 PKEEDKPVRTSKSEAKEEDVNDVAA---SLKAKS-KTRKEEEKRSKSSASAFVMGGVKES 396
Query: 336 KKKK 339
K KK
Sbjct: 397 KSKK 400
>gi|145348735|ref|XP_001418799.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579029|gb|ABO97092.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 188/335 (56%), Positives = 226/335 (67%), Gaps = 40/335 (11%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEA 67
T + KG++ + KPWD D IDHW V F N G+LE SSF+ LFP+YREKYL+E
Sbjct: 35 TSSGAKKGRYRRDKPWDHD-GIDHWSVTPFTAEDNPNGVLEESSFAVLFPKYREKYLRET 93
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
WP V ALKE GVSCELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+K+
Sbjct: 94 WPSVTKALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIMKARDLIKLLSRSVPAPQALKV 153
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------- 179
L+DE CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQ
Sbjct: 154 LEDETNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGG 213
Query: 180 --------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 213
LM+K+ELEKDP LA ++WDRFLPKFKKKNV++KK
Sbjct: 214 WKGLKMVRKIVEDAMKNTHPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRKK 273
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
KK FPP SKIDK +ESGEYFLS+ KE K +K +KQ + + +N +KR
Sbjct: 274 PAKIGKKERAVFPPTQPMSKIDKQIESGEYFLSKEAKERKAAYDKLQKQKDTSTDNHKKR 333
Query: 274 DAAFIPPEE---PSRQNSCEAEDKTNDVAAMAKSL 305
AAF+ P+E P+R S +A K DV A+ SL
Sbjct: 334 QAAFVAPKEDDKPARSKSSKA--KEEDVDAITASL 366
>gi|255080030|ref|XP_002503595.1| predicted protein [Micromonas sp. RCC299]
gi|226518862|gb|ACO64853.1| predicted protein [Micromonas sp. RCC299]
Length = 398
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 188/348 (54%), Positives = 235/348 (67%), Gaps = 42/348 (12%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
G+ E + K KG++ + KPWD D IDHWKV+ F N G+LE SSF+TLFP+YRE
Sbjct: 15 GDGEEASAGGK-KGRYRRDKPWDHD-GIDHWKVDPFTKDDNPDGLLEESSFATLFPKYRE 72
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E WP V ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPA
Sbjct: 73 KYLREVWPSVTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPA 132
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
PQA+KIL D++QCD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LT CY+LVQ
Sbjct: 133 PQALKILQDDVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTNCYVLVQGNT 192
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+K+EL KDPALA+++WDRFLPKFKKK
Sbjct: 193 VSCMGGWKGLKMVRKIIEDCMRNMHPIYHIKELMIKRELAKDPALADQSWDRFLPKFKKK 252
Query: 208 NVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKT 266
NV++KK K + K FPP PQPSKID +ESGEYFLS+ K + QEK +KQ E
Sbjct: 253 NVQRKKPAKIGKGKKDQVFPPAPQPSKIDMQIESGEYFLSQEAKRRRAAQEKLDKQKEAL 312
Query: 267 AENKRKRDAAFIPPEEPSRQNSCEAEDK-----TNDVAAMAKSLKEKA 309
+ ++++R AFI P+E ++ A K +DV A LKEK+
Sbjct: 313 SASQKRRRDAFIAPKEDGPEDGDAARKKKREVSADDVKASVAKLKEKS 360
>gi|168031539|ref|XP_001768278.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680456|gb|EDQ66892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/296 (65%), Positives = 228/296 (77%), Gaps = 36/296 (12%)
Query: 20 PKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYG 79
PKPWD D +I+HWK+EKFDP +NEGGMLE SSF+TLFP YREKYL+E WP++ ALKE+G
Sbjct: 35 PKPWDTD-DIEHWKLEKFDPSFNEGGMLEESSFATLFPAYREKYLRETWPVITQALKEHG 93
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ L+LV+GSMTVSTTRKTRDPYII+KARDL++LLSRSVPAPQA+KIL+D+MQCDIIKI
Sbjct: 94 IKAVLDLVKGSMTVSTTRKTRDPYIIMKARDLMKLLSRSVPAPQALKILEDDMQCDIIKI 153
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------------- 178
GNL+RNKERFVKRRQ L+GPN +TLKALE+LTGCY+LVQ
Sbjct: 154 GNLIRNKERFVKRRQRLLGPNGATLKALELLTGCYVLVQGSTVSAMGPWKGLKAVRRVVE 213
Query: 179 -------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP-YTP 224
LM+K+EL KDP L ++NWDRFLPKFKKKNVK KKV ++K YTP
Sbjct: 214 DCIKNVHPIYHIKALMIKRELAKDPELKDQNWDRFLPKFKKKNVKAKKVSKDKEKKDYTP 273
Query: 225 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 280
FPPP QPSK+D LESGEYFLS K +KKW+ K+EKQ+EK ENKRKR+AAFI P
Sbjct: 274 FPPPQQPSKVDLQLESGEYFLSAEMKAAKKWEAKKEKQSEKAVENKRKREAAFIAP 329
>gi|384253358|gb|EIE26833.1| hypothetical protein COCSUDRAFT_21918 [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 197/355 (55%), Positives = 245/355 (69%), Gaps = 36/355 (10%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD D I+HW+V KF N G+LE SSF+ LFP+YRE+YL+E WP
Sbjct: 23 KGKHDKPKPWDHD-GINHWEVSKFSKEDNPYGLLEESSFAILFPKYRERYLREIWPAATK 81
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE G+ CELNLVEGSMTV TTRKT DPYII+KARDL++LL+RSVP PQA+K+L+D+MQ
Sbjct: 82 ALKEVGIGCELNLVEGSMTVRTTRKTWDPYIIMKARDLLKLLARSVPYPQAVKVLNDDMQ 141
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIKIG LVRNKE+FVKRRQ L+GPN +TLKALE+LT CYILVQ
Sbjct: 142 CDIIKIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPFQGLKQ 201
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+EL KDPAL ENW+RFLPKFKKKNVK+KK +K
Sbjct: 202 VRRVVEDCIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVVTKK 261
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPPP QP K D LESGEYFL++++K +K +Q +QAE+ AE KR+R AF+P
Sbjct: 262 KDYTPFPPPQQPRKEDLELESGEYFLAQQEKAKRKKAVEQAQQAERVAEKKRRRQDAFVP 321
Query: 280 PE-EPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEK 333
P+ P++ E D+A M +SLK+KAKK K+ + ++++A E+
Sbjct: 322 PQASPAQPVVQEVRSANADLAEMTQSLKKKAKKSLKRDHGDEGGLDQFLAVPSEQ 376
>gi|223998947|ref|XP_002289146.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
gi|220974354|gb|EED92683.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
Length = 412
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/361 (50%), Positives = 236/361 (65%), Gaps = 58/361 (16%)
Query: 7 KTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE-----GGMLEVSSFSTLFPQYRE 61
K+ +KK+ K+ + KPWD +P+IDHW + +D N G +LE SSF+TLFP+YRE
Sbjct: 17 KSSSKKNHNKYRRDKPWD-NPSIDHWAITPWDEETNNDSLPGGRLLEESSFATLFPKYRE 75
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E WP+V +L +Y V+CELNLVEGSMTV TT+KT DPYII+KARDLI+LL+RS+PA
Sbjct: 76 KYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSIPA 135
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
PQA+KIL+D+ C+IIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQ
Sbjct: 136 PQALKILNDDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNT 195
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+ +ELE+DP L E+W+RFLP FKKK
Sbjct: 196 VSVMGTYKGIKQTRNVILDCMNNIHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKK 255
Query: 208 NVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKT 266
NVK++K + K+KK YTPFPP QPSKID LESGEYFLSER++++KK EK+ EKT
Sbjct: 256 NVKRRKPHQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKIASMEKT 315
Query: 267 AENKRKRDAAFIPPE-----------------EPSRQNSCEAEDKTNDVAAMAKSLKEKA 309
E +R R+ F+ P E +R+ S D +DV +AK +K
Sbjct: 316 EEKRRARELEFVHPSKFEEASVGGGTAAGAVVEANRKGSESGVDAKDDVDRLAKKFAKKR 375
Query: 310 K 310
K
Sbjct: 376 K 376
>gi|237832063|ref|XP_002365329.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|211962993|gb|EEA98188.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|221486813|gb|EEE25059.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii GT1]
gi|221506516|gb|EEE32133.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii VEG]
Length = 394
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 180/342 (52%), Positives = 232/342 (67%), Gaps = 45/342 (13%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+GK+ + KPWD D ++DHWK+E+F P N GGMLE SSF+ LFPQYREKYL+E WP VK
Sbjct: 41 RGKYRRDKPWDTD-DVDHWKIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKR 99
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL ++ V EL+L+EGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD M
Sbjct: 100 ALGQHFVKAELDLIEGSMTVRTTKKTFDPYIIIKARDMIKLLARSVPIAQARKILDDGMF 159
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CDIIKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQ
Sbjct: 160 CDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKGIKV 219
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-E 218
LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K ++ +
Sbjct: 220 VQRLVEDCMKNIHPVYHIKELMIKRELEKDPALVEENWERFLPQFKKRNVQRKARRAAIK 279
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK + FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R AF
Sbjct: 280 KKSKSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKREMRTAERKRERQQAFE 339
Query: 279 PPEEPS--------RQNSCEAEDKTND-VAAMAKSLKEKAKK 311
P E S +++ AE + D ++A+A+ L+ + KK
Sbjct: 340 PSAENSAKKRHAGTAESAGSAESASRDSISAIAERLQVRTKK 381
>gi|443897833|dbj|GAC75172.1| rRNA processing protein [Pseudozyma antarctica T-34]
Length = 461
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/310 (55%), Positives = 214/310 (69%), Gaps = 42/310 (13%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+H K KPWD+D I+HW+V KF P +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 104 RHRKDKPWDDD-TINHWEVPKFTPDEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSAL 162
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++G++C L+LVEGSMTV TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 163 DKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILEDGIECD 222
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQ
Sbjct: 223 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKSLKEVR 282
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK-- 219
LM+K+EL KDP LA ENW+RFLPKFKK+NVK KK E+
Sbjct: 283 RIVIDCLKNVHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNVKPKKSAEGEQKK 342
Query: 220 -----KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
K YTPFPPP QPSKID LESGEYFL R+K+ + Q+K Q E+ + + +R
Sbjct: 343 EKIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKHAEEQKKIAHQQEQKEKREAERQ 402
Query: 275 AAFIPPEEPS 284
AF+PP EP+
Sbjct: 403 KAFVPPTEPA 412
>gi|412992272|emb|CCO19985.1| ribosomal RNA assembly protein mis3 [Bathycoccus prasinos]
Length = 390
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 220/312 (70%), Gaps = 36/312 (11%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ N+ KG++ + KPWD IDHW V KF N G+L+ SSF+TLFP+YREKYL+
Sbjct: 15 EQEQNQGKKGRYRREKPWDH-AGIDHWDVPKFTKEDNPHGLLDESSFATLFPKYREKYLR 73
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ WP + ALK+ GV CELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+
Sbjct: 74 DVWPSITKALKDVGVGCELNLVEGSMTVRTTRKTWDPYIIIKARDLIKLLSRSVPAPQAL 133
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------ 179
K+L D+ QCD+IKIG LVRNKERFVKRRQ LVGPN STLKA+E+LT CY+L+Q
Sbjct: 134 KVLSDDTQCDVIKIGGLVRNKERFVKRRQRLVGPNGSTLKAIEMLTDCYVLIQGNTVSAM 193
Query: 180 ----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ 211
LM+K+ELEKDP L N++WDRFLPKFKKKNVK+
Sbjct: 194 GSFKGLKTCRKIVEDAMKNVHPIYHIKELMIKRELEKDPELKNQSWDRFLPKFKKKNVKR 253
Query: 212 KKVK-SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
KK + KEKK + FPP PSKID +ESGEYFLS+ K+ KK QEK EKQ E +NK
Sbjct: 254 KKPEYVKEKKARSVFPPAQMPSKIDLQIESGEYFLSQEAKQMKKAQEKLEKQKEGIEKNK 313
Query: 271 RKRDAAFIPPEE 282
R+R+ AFI P+E
Sbjct: 314 RRREEAFIAPKE 325
>gi|401406702|ref|XP_003882800.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
gi|325117216|emb|CBZ52768.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
Length = 394
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 226/333 (67%), Gaps = 45/333 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
+ + KPWD D ++DHWK+E+F P N GGMLE SSF+ LFPQYREKYL+E WP VK AL
Sbjct: 44 YRRDKPWDTD-DVDHWKIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKRALG 102
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++ V EL+LVEGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD M CDI
Sbjct: 103 QHFVKAELDLVEGSMTVRTTKKTYDPYIIIKARDMIKLLARSVPIAQARKILDDGMFCDI 162
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQ
Sbjct: 163 IKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKGIKVVQR 222
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-EKKP 221
LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K +++ +KK
Sbjct: 223 LVEDCMKNIHPVYHIKELMIKRELEKDPALVAENWERFLPQFKKRNVQRKARRAEVKKKN 282
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
+ FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R AF P
Sbjct: 283 KSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKRELRTAERKRERQRAFEPSA 342
Query: 282 EPS----RQNSCEA---EDKTN--DVAAMAKSL 305
E S R N +A D T+ VAA+A+ L
Sbjct: 343 ENSAKKRRANFSDAAGDNDSTDSASVAAIAERL 375
>gi|388854361|emb|CCF51945.1| probable KRR1-required for 40S ribosome biogenesis [Ustilago
hordei]
Length = 377
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/325 (52%), Positives = 214/325 (65%), Gaps = 59/325 (18%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD D +I+HW+V +F P +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDSD-SINHWEVPQFLPNEIKGTFLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 EKHGIACTLDLVEGSMTVKTTRKTYDPYIILKARDMIRLLSRSVPFPQAVKILEDGVECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKIG+L+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQ
Sbjct: 138 VIKIGHLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGHFKALKEVR 197
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS----- 216
LM+K+EL KDP LA ENWDRFLPKFKK+NVK K +
Sbjct: 198 RIVIDCLKNIHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKRNVKSKPASTTTDSA 257
Query: 217 -------------------KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQE 257
+KK YTPFPPP QPSKID LESGEYFL R+K+ + +
Sbjct: 258 NGVATGANAVGEGSSKKKEIKKKTYTPFPPPQQPSKIDLQLESGEYFLKPREKKRAEEER 317
Query: 258 KQEKQAEKTAENKRKRDAAFIPPEE 282
K +KQAE + + +R F+PP E
Sbjct: 318 KLKKQAEHKEKREAERQKMFVPPTE 342
>gi|219117602|ref|XP_002179593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408646|gb|EEC48579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 379
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/375 (46%), Positives = 239/375 (63%), Gaps = 49/375 (13%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-------MLEVSSFSTLFPQYRE 61
KK+ K+ + KPWD D +IDHWK+ ++ ++GG +LE SSF+TLFP+YRE
Sbjct: 11 ATKKNHNKYRRDKPWDND-DIDHWKLASWNA--DDGGDTLPGGRLLEESSFATLFPKYRE 67
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
YL++ WP+V L ++GV+CELNLVEGSMTV TT++T+DPY+I+KARDL++LL+RS+P
Sbjct: 68 AYLRQIWPVVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPYVILKARDLLKLLARSLPV 127
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
QA+KIL D+ QCDI+KIG LVRNKERFVKRRQ L+GP+ STLKALE+LTGCYILVQ
Sbjct: 128 AQAVKILQDDYQCDIVKIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYILVQGNT 187
Query: 180 ---------------------------------LMVKKELEKDPALANENWDRFLPKFKK 206
LM++KEL KDPAL NE+W RFLP+F+K
Sbjct: 188 VSIMGDSWKGLKQARRVVLDCLKNIHPVYHLKRLMIQKELAKDPALQNEDWSRFLPQFQK 247
Query: 207 KNVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 265
KNV+ KK K KK YTPFPP QPSKID LESGEYF +E ++++KK +++E K
Sbjct: 248 KNVQTKKPSVRKTKKSYTPFPPAQQPSKIDLQLESGEYFATEFERKTKKVADRKEASKSK 307
Query: 266 TAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEE 325
+ ++ R+ P SR+ T + + + +K+K +K + + +P +
Sbjct: 308 SIAKRKARELEEETPVLASRKAKTTT---TKEDIPVEQRIKDKFQKAAQASQSSTSDPAD 364
Query: 326 YIAASGEKPSKKKKS 340
+I SG + KKS
Sbjct: 365 FIQGSGSGSKRGKKS 379
>gi|302895245|ref|XP_003046503.1| 90S preribosome/SSU processome component KRR1 [Nectria haematococca
mpVI 77-13-4]
gi|256727430|gb|EEU40790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 321
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 170/308 (55%), Positives = 210/308 (68%), Gaps = 40/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKV+ F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDVFTPKDNAGGTFAEESSFATLFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILDD + CD
Sbjct: 64 EKTGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI +LVRNKERFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 IIKIRSLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEMR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSRRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFL ++ KE +E++EKQ ++ + ++R+A F
Sbjct: 244 TKKTYTPFPPAPEKSKVDMQIESGEYFLGKQGKERAAQEERKEKQKQRKEDKAKEREAEF 303
Query: 278 IPPEEPSR 285
+PPEE R
Sbjct: 304 VPPEEGGR 311
>gi|393215379|gb|EJD00870.1| ribosomal RNA assembly protein mis3 [Fomitiporia mediterranea
MF3/22]
Length = 393
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 169/330 (51%), Positives = 214/330 (64%), Gaps = 64/330 (19%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
+H K KPWD D +IDHWK++ F N+GG LE SSF+TLFP+YREKYL+E W V A
Sbjct: 16 RHRKDKPWDTD-DIDHWKIDPFTNTDNKGGTFLEESSFATLFPKYREKYLREVWSAVTKA 74
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+ +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V QA+KIL+D+M C
Sbjct: 75 LESHGIACTLDLIHGSMAVRTTRKTFDPYIILKARDMIKLLARGVALGQAVKILNDDMAC 134
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
DIIKIG LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 135 DIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSAMGPYKSLKEV 194
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKE 218
LM+K+EL KDP LANE+WDRFLPKF+K+++K +K + E
Sbjct: 195 RRIVLDCMRNIHPIYRIKELMIKRELAKDPKLANESWDRFLPKFRKRHLKTSEKTARKNE 254
Query: 219 --------------------------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 252
KK YTPFPPP QP K+D LESGEYFL R+KE+
Sbjct: 255 AHRSKDEARKEAGLDVDGSTTANIPKKKVYTPFPPPQQPRKVDLQLESGEYFLKPREKEA 314
Query: 253 KKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
K+ Q+++EKQAE TAE + KR AF+ P E
Sbjct: 315 KEAQKRKEKQAEVTAERQAKRAEAFVAPTE 344
>gi|397640808|gb|EJK74329.1| hypothetical protein THAOC_03996 [Thalassiosira oceanica]
Length = 420
Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 171/329 (51%), Positives = 217/329 (65%), Gaps = 60/329 (18%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQ 65
KK+ K+ + KPWD + +IDHW+ +D + G +LE SSF+TLFP+YREKYL+
Sbjct: 24 GKKNHNKYRRDKPWD-NADIDHWENNPWDESTGDTLPGGRLLEESSFATLFPKYREKYLR 82
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP+V L +Y ++CELNLVEGSMTV TTRKT DPYII+KARDLI+LL+RS+PAPQA+
Sbjct: 83 EVWPLVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPYIILKARDLIKLLARSIPAPQAL 142
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------ 179
KIL+DE CDIIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQ
Sbjct: 143 KILNDEYNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVM 202
Query: 180 ----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ 211
LM+ KELEKDP L NE+W+RFLP F+KKN+ +
Sbjct: 203 GTHKGIKKVRTVVIECMNNIHPVYNIKRLMIMKELEKDPKLQNESWERFLPTFQKKNLSK 262
Query: 212 K--------------------KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 251
+ KV+SK KK YTPFPP QPSKID L+SGEYFLSER+++
Sbjct: 263 RRKPRQVVEEAQKAAKNGGEGKVRSK-KKSYTPFPPAQQPSKIDLQLDSGEYFLSERERK 321
Query: 252 SKKWQEKQEKQAEKTAENKRKRDAAFIPP 280
+++ EK+ EK+ E +R R+ F+ P
Sbjct: 322 ARQLSEKKMASKEKSEEKRRAREMEFVHP 350
>gi|378727857|gb|EHY54316.1| ribosomal RNA assembly protein KRR1 [Exophiala dermatitidis
NIH/UT8656]
Length = 337
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/305 (55%), Positives = 208/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF+ LFP+YRE YL++AWP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEEFKPEHNVGGTFAEESSFACLFPKYRELYLKQAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG M V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D+M CD
Sbjct: 64 EKKGIACTLDLVEGRMEVRTTRKTYDPAAILDARDLIKLLARSVPAPQALKILQDDMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLVRNKERFVKRRQ L+GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRNLVRNKERFVKRRQRLLGPNGSTLKALELLTNTYILVQGNTVSTMGGYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDPAL NE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHVKELMIKRELAKDPALKNESWDRFLPHFKKKTLSKRHKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KPYTPFPPP + SKID +ESGEYFL+++ KE K QE+ E+Q K E +R+R+ AF
Sbjct: 244 SSKPYTPFPPPREKSKIDLQIESGEYFLAKQAKERAKEQERLERQKAKKEEKQREREQAF 303
Query: 278 IPPEE 282
+ P+E
Sbjct: 304 VAPKE 308
>gi|303271267|ref|XP_003054995.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462969|gb|EEH60247.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 306
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/304 (57%), Positives = 217/304 (71%), Gaps = 36/304 (11%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KG++ + KPWD IDHWKV+ F N G+L+ SSF+TLFP+YREKYL+E WP V
Sbjct: 2 KGRYRRDKPWDH-AGIDHWKVDPFTKEDNPDGLLDESSFATLFPKYREKYLREVWPSVTR 60
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPAPQA+KIL D++Q
Sbjct: 61 ALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPAPQALKILSDDVQ 120
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LTGCY+LVQ
Sbjct: 121 CDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSCMGGWKGLKT 180
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKE 218
LM+K+EL KDPALA+++WDRFLPKFKKKNVK+KK K +
Sbjct: 181 VRKIIEDCMKNMHPIYHIKELMIKRELAKDPALASQSWDRFLPKFKKKNVKRKKPSKIGK 240
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
K FPP P PSK+D+ +ESGEYFLS+ K + EK EKQ E + +++KR+ AFI
Sbjct: 241 GKKDQVFPPAPVPSKLDQQIESGEYFLSQEAKRRRAAAEKLEKQKEAVSASQKKRNEAFI 300
Query: 279 PPEE 282
P+E
Sbjct: 301 APKE 304
>gi|358393418|gb|EHK42819.1| hypothetical protein TRIATDRAFT_300850 [Trichoderma atroviride IMI
206040]
Length = 320
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/305 (55%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKVE F N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVEAFTAKDNAGGTFTEESSFVTLFPKYREVYLKEAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILV
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ E++EKQ E + ++R A +
Sbjct: 244 AKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAVLTERREKQQEAKEQRAKQRAAEY 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|340519761|gb|EGR49999.1| hypothetical protein TRIREDRAFT_76833 [Trichoderma reesei QM6a]
Length = 320
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 205/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F N GG E SSF TLFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIETFTAKDNAGGTFAEESSFVTLFPKYREVYLKEVWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + + ++R A F
Sbjct: 244 TKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRAKERAAQF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|358385056|gb|EHK22653.1| hypothetical protein TRIVIDRAFT_179973 [Trichoderma virens Gv29-8]
Length = 320
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKVE F N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKVETFTAKDNAGGTFTEESSFVTLFPKYREVYLKEAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + + ++R A F
Sbjct: 244 AKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRAKERAAEF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|164660108|ref|XP_001731177.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
gi|159105077|gb|EDP43963.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
Length = 363
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/305 (55%), Positives = 211/305 (69%), Gaps = 38/305 (12%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E+F N LE SSF+TLFP+YREKYL+E W
Sbjct: 11 VNKNKRFRKDKP--WDSD-DIDHWKIERFTQEDNPHHFLEESSFATLFPKYREKYLREVW 67
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
V AL+++GV+C L+LVEGSM+V TTRKT DPYII++ARDLI+LLSRSVP QA+KIL
Sbjct: 68 GHVTTALEKHGVACTLDLVEGSMSVRTTRKTFDPYIILRARDLIKLLSRSVPFTQAVKIL 127
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------- 179
D+M CD+IKIGN+VRNKERFVKRRQ ++GPN +TLKA+E+LTGCY+LVQ
Sbjct: 128 QDDMACDVIKIGNIVRNKERFVKRRQRIIGPNGNTLKAIELLTGCYVLVQGNTVSAMGSY 187
Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 214
LM+K+EL KDP LANE+WDRFLPKFKK+NVK KK
Sbjct: 188 KGLKEVRRIILDCMKNIHPIYHIKELMIKRELAKDPKLANESWDRFLPKFKKQNVKSKKP 247
Query: 215 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
KK YTPFPPP QPSK+D LESGEYFL +K+ + +K + QAE + +++R
Sbjct: 248 AEPPKKKIYTPFPPPQQPSKLDLQLESGEYFLKPHEKKKSEMDKKLQAQAEHAVKREKER 307
Query: 274 DAAFI 278
+ F+
Sbjct: 308 EKQFM 312
>gi|302697271|ref|XP_003038314.1| 90S preribosome/SSU processome component KRR1 [Schizophyllum
commune H4-8]
gi|300112011|gb|EFJ03412.1| hypothetical protein SCHCODRAFT_46498 [Schizophyllum commune H4-8]
Length = 399
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/339 (48%), Positives = 217/339 (64%), Gaps = 64/339 (18%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYL 64
E+ V K+K H K KPWD D +IDHWK++ F P N+GG E SSF+TLFP+YREKYL
Sbjct: 4 EEVVVNKNKA-HRKDKPWDTD-DIDHWKIDPFTPADNKGGTFFEESSFATLFPKYREKYL 61
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W V AL +GV+C L+LV GSM V TTRKT DPYII+KARD+I+LL+R V QA
Sbjct: 62 KEVWGAVTRALDHHGVACTLDLVHGSMAVRTTRKTYDPYIILKARDMIKLLARGVAVAQA 121
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----- 179
+KILDD M CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 122 VKILDDNMACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSV 181
Query: 180 -----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK 210
LM+++EL KDP LANE+WDRFLP F+K+++K
Sbjct: 182 MGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIRRELAKDPKLANESWDRFLPAFRKRHLK 241
Query: 211 QKKVKSKEKK---------------------------PYTPFPPPPQPSKIDKLLESGEY 243
+ +K+ + YTPFPPP QP K+D LESGEY
Sbjct: 242 TSEKTAKKNERAAAKGEARAAAGLDPEKVEKEKSKKKVYTPFPPPQQPRKVDLQLESGEY 301
Query: 244 FLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
FL +++E+K+ Q+++EKQA+ A+ + +R+AA++ P E
Sbjct: 302 FLKPKEREAKEAQKRKEKQADVAAQRQAEREAAYVAPAE 340
>gi|449682115|ref|XP_004210000.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Hydra magnipapillata]
Length = 402
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/323 (53%), Positives = 218/323 (67%), Gaps = 39/323 (12%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWKVE F N G++E SSF+TLFP+YRE YL+E WP+VK L + +
Sbjct: 69 PWDHE-GIDHWKVEPFTEADNPHGLIEESSFATLFPKYRETYLREVWPLVKEKLGSHHIR 127
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C L++VEGSMTV+TTRKT DPYII+KARD+I+L+SR V Q+ ++L+D++ CDIIKI N
Sbjct: 128 CALDVVEGSMTVATTRKTFDPYIILKARDMIKLMSRGVSYEQSCRVLEDDVACDIIKIRN 187
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LVRNKERF+KRRQ L+GPN +TLKALE+LT CYILVQ
Sbjct: 188 LVRNKERFIKRRQRLIGPNGATLKALELLTECYILVQGGTVSAIGSFKGLKQVRNVVEET 247
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 227
I+M+K+EL KDP L NENW RFLPKFK KNV++KK K KEKKPYTPFPP
Sbjct: 248 MKNIHPIYNIKIMMIKRELAKDPTLKNENWSRFLPKFKNKNVQRKKPKIKEKKPYTPFPP 307
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSR 285
P Q SKID L SGEYFL++ +K K+ + K++KQ E + K KR +FIPP E P+
Sbjct: 308 PQQESKIDIQLASGEYFLNKEEKVLKERENKKKKQEEAGVQRKIKRQQSFIPPSEVKPND 367
Query: 286 QNSCEAEDKTN--DVAAMAKSLK 306
+N E K+ DV + K++K
Sbjct: 368 KNDTETSKKSTSVDVNVLKKNIK 390
>gi|428169969|gb|EKX38898.1| hypothetical protein GUITHDRAFT_158464 [Guillardia theta CCMP2712]
Length = 356
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 176/345 (51%), Positives = 229/345 (66%), Gaps = 39/345 (11%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREK 62
E + K V K K + DKP WD + +IDHWK+E F + +LE SSF+TLFP+YRE+
Sbjct: 15 EEVNKEVPKNKKYRRDKP--WDSE-DIDHWKIEPFSQGDMKTALLEESSFATLFPKYREQ 71
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YL+E WP + L GV+CELNLVEGSMTV TTRKT DPYII+K+RDLI+LL+RSVPA
Sbjct: 72 YLRETWPAITKELDRVGVACELNLVEGSMTVKTTRKTWDPYIILKSRDLIKLLARSVPAQ 131
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV----- 177
QA+KIL D++QCDIIKI +VRNK+RFVKRRQ L+GPN STLKALE+LT + V
Sbjct: 132 QALKILQDDVQCDIIKISGMVRNKDRFVKRRQRLLGPNGSTLKALELLTKNTVSVMGSFQ 191
Query: 178 ----------------------QILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 215
+ LM+++EL KD L NE+WDRFLPKFKK+NVK KK K
Sbjct: 192 GIKQARKVIVDCMNNIHPIYNIKALMIRRELSKDEKLKNESWDRFLPKFKKRNVKTKKPK 251
Query: 216 --SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
+ +KK YTPFPPP QPSK+D LESGE+FL+E +++ K E+ EK + +N + +
Sbjct: 252 ETAAKKKEYTPFPPPQQPSKVDLELESGEFFLNEAQRKEKTKAERAEKNKQIKEQNDKDK 311
Query: 274 DAAFIPPEEPSRQNSC----EAEDKTNDVAAM---AKSLKEKAKK 311
A F+PP+E ++ E+K ND+ A+ +LKEK +K
Sbjct: 312 AAVFVPPKEKKKKRKSGEDEGQEEKKNDMKALKEQVANLKEKVRK 356
>gi|328769725|gb|EGF79768.1| hypothetical protein BATDEDRAFT_35295 [Batrachochytrium
dendrobatidis JAM81]
Length = 369
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/319 (52%), Positives = 209/319 (65%), Gaps = 35/319 (10%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K +H K KPWD D +IDHWKV++F P N L SSF+TLFP+YRE YL+E WPM+
Sbjct: 23 KRQHRKEKPWDTD-DIDHWKVDEFKPEHNPHPFLAESSFATLFPKYRETYLREVWPMITA 81
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
+L + G++C L+LVEGS+TV TTRKT DPYII+KARD+IRLLSRSV QA+KIL+D +
Sbjct: 82 SLDKVGLACALDLVEGSITVKTTRKTYDPYIILKARDMIRLLSRSVQFNQAVKILEDGVA 141
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CDIIKIG LVRNKERFVKRRQ L+GP STLKA+E+LT CY+LVQ
Sbjct: 142 CDIIKIGGLVRNKERFVKRRQRLLGPKGSTLKAIELLTNCYVLVQGNTVAAMGPFKGLKD 201
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+EL KD L E+WDRFLPKFKK+NV+ K K
Sbjct: 202 VRRLILDCMKNIHPIYHIKELMIKRELAKDEKLKEESWDRFLPKFKKRNVQSSKKVKIVK 261
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K TPFPPP QP KID +ESGE+FLS+ ++++ Q+K+EKQ + + + R AFI
Sbjct: 262 KERTPFPPPQQPRKIDLQIESGEFFLSKTERDAAARQKKKEKQDANSLKKQEARQEAFIA 321
Query: 280 PEEPSRQNSCEAEDKTNDV 298
P EP R S ++ K +
Sbjct: 322 PAEPKRTKSESSQQKPQSI 340
>gi|213402313|ref|XP_002171929.1| 90S preribosome/SSU processome component KRR1 [Schizosaccharomyces
japonicus yFS275]
gi|211999976|gb|EEB05636.1| ribosomal RNA assembly protein mis3 [Schizosaccharomyces japonicus
yFS275]
Length = 334
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 174/307 (56%), Positives = 218/307 (71%), Gaps = 36/307 (11%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ + KPWD D +IDHWK++ F + G LE SSF+TLFP+YREKYL+E WP V AL
Sbjct: 19 RYRREKPWDTD-DIDHWKIDPFTKEESSGPFLEESSFATLFPKYREKYLREVWPHVTRAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+YG++C L+LVEGSMTV TTRK DPY I+KARDLI+LL+RSVP PQAIK++ D++ CD
Sbjct: 78 DKYGIACVLDLVEGSMTVKTTRKAYDPYSILKARDLIKLLARSVPFPQAIKVMQDDVACD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKIGNLVRNK+RF+KRRQ L+G N TLKALE+LT CYILVQ
Sbjct: 138 VIKIGNLVRNKDRFIKRRQRLIGNNGQTLKALELLTQCYILVQGTTVAAMGGFKGLKEVR 197
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKK 220
LM+K+EL KDPALA E+WDRFLP+FKK+NV ++K K +EKK
Sbjct: 198 RVVIDCMNNIHPIYHIKELMIKRELAKDPALATESWDRFLPQFKKRNVARRKPAKVREKK 257
Query: 221 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 280
YTPFPP QPSKID +ESGEYFL++ ++E KK QEK+EKQAEK E + +R+ AFIPP
Sbjct: 258 DYTPFPPAQQPSKIDLQIESGEYFLNKEERERKKRQEKKEKQAEKQKERQAEREKAFIPP 317
Query: 281 EEPSRQN 287
E + Q
Sbjct: 318 TESAPQT 324
>gi|398397527|ref|XP_003852221.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
gi|339472102|gb|EGP87197.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
Length = 887
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 205/316 (64%), Gaps = 40/316 (12%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREK 62
N + ++ K + K KPWD D +ID WK E F P N GG E SSFSTLFP+YRE
Sbjct: 539 NAPQEMHSKMPSTYKKDKPWDTD-DIDKWKEEAFTPEQNAGGTFSEESSFSTLFPKYREA 597
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YL+ +WPM+ L++YG++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAP
Sbjct: 598 YLKASWPMITRQLEKYGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAP 657
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--- 179
QA+KIL+D M CD+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 658 QAVKILEDGMACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTV 717
Query: 180 -------------------------------LMVKKELEKDPALANENWDRFLPKFKKKN 208
LM+K+EL KDP L NENWDRFLP FKK+N
Sbjct: 718 SVMGGYKSLKEVRRVVEDCMDNIHPIYHVKELMIKRELAKDPELKNENWDRFLPHFKKRN 777
Query: 209 VKQKK----VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 264
+ +++ V K KK YTPFPPP + SK+D +ESGEYFL+ KE + +++ E
Sbjct: 778 LSKRRVPRNVSDKSKKVYTPFPPPQEKSKVDLQIESGEYFLNNAAKERVAKERREDAMKE 837
Query: 265 KTAENKRKRDAAFIPP 280
K E KRKR+ AF P
Sbjct: 838 KMEERKRKREEAFEAP 853
>gi|303310074|ref|XP_003065050.1| 90S preribosome/SSU processome component KRR1 [Coccidioides
posadasii C735 delta SOWgp]
gi|240104709|gb|EER22905.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033237|gb|EFW15186.1| ribosomal RNA assembly protein mis3 [Coccidioides posadasii str.
Silveira]
Length = 349
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 209/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFVSLFPKYREVYLKETWPIITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGTACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE ++ + F
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKMKEIEKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|115384518|ref|XP_001208806.1| 90S preribosome/SSU processome component KRR1 [Aspergillus terreus
NIH2624]
gi|114196498|gb|EAU38198.1| ribosomal RNA assembly protein mis3 [Aspergillus terreus NIH2624]
Length = 360
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 208/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD P+ID WKVE F P N G E SSF+TLFP+YRE YL+EAWP++ AL
Sbjct: 5 YKRDKPWD-TPDIDKWKVEPFKPEDNAAGSFAEESSFATLFPKYREVYLKEAWPVITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ ++GP+ STLKALE+LTG YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVNDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E EKQ +K E ++R +F
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERARKEEVMEKQRQKREEKMQERAKSF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|242787818|ref|XP_002481093.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
stipitatus ATCC 10500]
gi|218721240|gb|EED20659.1| rRNA assembly protein Mis3, putative [Talaromyces stipitatus ATCC
10500]
Length = 348
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/303 (55%), Positives = 206/303 (67%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF TLFP+YRE YL+EAWPM+ L
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFMTLFPKYREVYLKEAWPMITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPA QAIKIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLSRSVPAQQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI +LV NKERFVKRRQ ++GP+ STLKALE+LTG YILVQ
Sbjct: 124 IIKIRSLVNNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVSTMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVIEDCMANIHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
+K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E ++R F
Sbjct: 244 SQKVYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKMKERQKDF 303
Query: 278 IPP 280
+PP
Sbjct: 304 VPP 306
>gi|119178764|ref|XP_001241021.1| 90S preribosome/SSU processome component KRR1 [Coccidioides immitis
RS]
gi|392867014|gb|EAS29799.2| ribosomal RNA assembly protein KRR1 [Coccidioides immitis RS]
Length = 349
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 208/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFVSLFPKYREVYLKETWPILTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGTACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE ++ + F
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKMKEIEKDF 303
Query: 278 IPPEE 282
IPP+E
Sbjct: 304 IPPKE 308
>gi|390600873|gb|EIN10267.1| ribosomal RNA assembly protein mis3 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 207/329 (62%), Gaps = 63/329 (19%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGA 74
+H K KPWD D +IDHWK++ F P N+GG E SSF+TLFP+YREKYLQE W V A
Sbjct: 16 RHRKDKPWDTD-DIDHWKIDPFTPEDNKGGTFTEESSFATLFPKYREKYLQEVWSAVTAA 74
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KIL D+M C
Sbjct: 75 LDSHGIACTLDLIHGSMSVKTTRKTYDPYIILKARDMIKLLARGVAVGQAVKILQDDMAC 134
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
DIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 135 DIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTRCYVLVQGSTVSVMGPYKSLKEV 194
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK---------- 210
LM+K+EL KDP LA E WDRFLP+F++K++K
Sbjct: 195 RRIVLDCMKNIHPIYRIKELMIKRELAKDPKLATEPWDRFLPQFRRKHLKTSEKTARKNA 254
Query: 211 -----------------QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 253
+ K K KK YTPFPP P K+D LESGEYFL +KE+K
Sbjct: 255 AVEAKKEARAAAGLDPEEMAKKDKAKKVYTPFPPAQLPRKVDLQLESGEYFLKPHEKEAK 314
Query: 254 KWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+ + ++EKQAE TA+ + +R AF+ P E
Sbjct: 315 EAKRRKEKQAEVTAKRRAERQEAFVAPAE 343
>gi|395330640|gb|EJF63023.1| hypothetical protein DICSQDRAFT_56643 [Dichomitus squalens LYAD-421
SS1]
Length = 386
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/344 (48%), Positives = 216/344 (62%), Gaps = 66/344 (19%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYR 60
G + VNK + H K KPWD D +IDHWK++ F P N+ G E SSF+TLFP+YR
Sbjct: 5 GSDAAPVVNKNKR--HRKDKPWDTD-DIDHWKIDPFQPDDNKAGPFTEESSFATLFPKYR 61
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL+E W V AL +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V
Sbjct: 62 EKYLREVWSAVTQALDPHGIACTLDLIHGSMAVRTTRKTYDPYIILKARDMIKLLARGVA 121
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI- 179
QA+KIL+D++ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 122 VAQAVKILNDDVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGN 181
Query: 180 ---------------------------------LMVKKELEKDPALANENWDRFLPKFKK 206
LM+K+EL KDP LA E+WDRFLPKF+K
Sbjct: 182 TVGVMGPYKGLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRK 241
Query: 207 KNVK--QKKVKSKEK--------------------------KPYTPFPPPPQPSKIDKLL 238
+++K +K + E+ K YTPFPPP QP K+D L
Sbjct: 242 RHLKTSEKTARKNERVQEKNEARKAAGLPTLEEAKKERKEKKVYTPFPPPQQPRKVDLQL 301
Query: 239 ESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
ESGEYFL +KE+++ ++++EKQ E TAE + KR AF+ PEE
Sbjct: 302 ESGEYFLKAHQKEAREAKKRKEKQEEVTAERQAKRAEAFVAPEE 345
>gi|320592210|gb|EFX04649.1| rRNA assembly protein [Grosmannia clavigera kw1407]
Length = 327
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD D +ID WKVE F P N GG LE SSFSTLFP+YRE YL+EAWP V AL
Sbjct: 5 HEKDKPWDTD-DIDKWKVEPFKPEDNVGGSFLEESSFSTLFPKYREVYLREAWPGVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++CEL+LV G+MTV TTR+T DP I+ ARDLIRLLSRSVPAPQA+++L++ + D
Sbjct: 64 QKHGIACELDLVTGTMTVKTTRRTYDPAAILNARDLIRLLSRSVPAPQALRVLEEGVAAD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI +LVRNKERFVKRRQ ++GP STLKALEILT YILVQ
Sbjct: 124 IIKIRSLVRNKERFVKRRQRILGPGGSTLKALEILTETYILVQGGTVAVMGPFRGLKDVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LMVK+EL KDP LA E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMANVHPIYMIKELMVKRELAKDPQLATESWDRFLPNFKKRTLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KPYT FPP P+ SK+D +E+GEYFLS+ K+ E+QEK +K + KR+R+ F
Sbjct: 244 AAKPYTAFPPAPEKSKVDLQIETGEYFLSKEAKKRATETERQEKAHQKKEDKKREREKDF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|296420562|ref|XP_002839838.1| 90S preribosome/SSU processome component KRR1 [Tuber melanosporum
Mel28]
gi|295636044|emb|CAZ84029.1| unnamed protein product [Tuber melanosporum]
Length = 344
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/305 (55%), Positives = 213/305 (69%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
HDK KPWD D +ID WK+E+F P N+ G +E SSF+TLFP+YRE YL+EAWP++ L
Sbjct: 5 HDKEKPWDTD-DIDKWKIEEFKPEDNKAGAFIEESSFATLFPKYRETYLREAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++ ++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQAIKIL+D + CD
Sbjct: 64 EKHHIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPVPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKIGNLVRNKERFVKRRQ ++GP STLKALE+LTGCYILVQ
Sbjct: 124 IIKIGNLVRNKERFVKRRQRILGPGGSTLKALELLTGCYILVQGSTVSAMGGYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNV----KQKKVKSK 217
LM+K+EL+KDP L NENWDRFLP+FKK+ + K +K+ K
Sbjct: 184 RVVEGCMDNIHPIYHIKELMIKRELQKDPELVNENWDRFLPQFKKRTLSKRKKPRKITDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SKID +ESGEYFLS++ KE E++EK+ EK E K++R+ F
Sbjct: 244 SKKTYTPFPPAPEKSKIDLQIESGEYFLSKQSKERAARDEREEKRKEKKEEKKKEREKDF 303
Query: 278 IPPEE 282
+PP E
Sbjct: 304 VPPLE 308
>gi|354546423|emb|CCE43153.1| hypothetical protein CPAR2_207960 [Candida parapsilosis]
Length = 363
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 163/309 (52%), Positives = 208/309 (67%), Gaps = 39/309 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
HDK KPWD P+ID W VE+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HDKDKPWD-TPDIDKWTVEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEG+MTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIRCELDLVEGAMTVKTTTKTFDPAMILKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK--E 218
LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKVK+ E
Sbjct: 184 RRVAEDCMKNIHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVKTSKVE 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP QP K+D +ESGEYFL +R++E KK QEK+ Q E + +++R ++
Sbjct: 244 KKVYTPFPPAQQPRKVDLQIESGEYFLGKRERELKKIQEKRALQEENSELKRQERAKGYV 303
Query: 279 PPEEPSRQN 287
PEE +N
Sbjct: 304 APEEEQYEN 312
>gi|299747151|ref|XP_001841248.2| 90S preribosome/SSU processome component KRR1 [Coprinopsis cinerea
okayama7#130]
gi|298407390|gb|EAU80543.2| ribosomal RNA assembly protein mis3 [Coprinopsis cinerea
okayama7#130]
Length = 392
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/367 (45%), Positives = 220/367 (59%), Gaps = 63/367 (17%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQY 59
M E E K H K KPWD D +IDHWK+E F P N+GG E SSF+TLFP+Y
Sbjct: 1 MAETTEAPKEKGKNKAHRKDKPWDTD-DIDHWKIEPFKPEDNKGGTFAEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+E W V AL+ +GV+C L+LV GSM+V TTRKT DPYII+KARD+I+L++R V
Sbjct: 60 REKYLREVWSAVTKALEVHGVACTLDLVHGSMSVRTTRKTYDPYIILKARDMIKLMARGV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI 179
QA+KIL D+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 120 ALNQAVKILQDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQG 179
Query: 180 ----------------------------------LMVKKELEKDPALANENWDRFLPKFK 205
LM+++EL KDP LA E+WDRFLP+F+
Sbjct: 180 STVSVMGPFKSLKEVRRIVLDCMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFR 239
Query: 206 KKNVKQKKVKS---------------------------KEKKPYTPFPPPPQPSKIDKLL 238
K+++K + + K+KK YTPFPPP P K+D L
Sbjct: 240 KRHLKTSEKTAKKNEKLKEKEEARKAAGLDPAEASKTEKKKKVYTPFPPPQLPRKVDLQL 299
Query: 239 ESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDV 298
ESGEYFL +K +K+ +++++KQ E T + K +R AF+ P E + E + +
Sbjct: 300 ESGEYFLKASEKAAKEAEKRKQKQMEVTEQRKAERAEAFVAPAEQAAPTVEEKKKRKRAA 359
Query: 299 AAMAKSL 305
A M K +
Sbjct: 360 AEMEKEM 366
>gi|358365716|dbj|GAA82338.1| ribosomal RNA assembly protein mis3 [Aspergillus kawachii IFO 4308]
Length = 368
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 207/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WKVE F P N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKVEPFQPDDNVAGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIINDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E ++R+ AF
Sbjct: 244 TKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKMKEREKAF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|225679901|gb|EEH18185.1| ribosomal RNA assembly protein mis3 [Paracoccidioides brasiliensis
Pb03]
gi|226291669|gb|EEH47097.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides brasiliensis
Pb18]
Length = 359
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPMV AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFISLFPKYREAYLKETWPMVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMANIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK R+ + F
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKARELEKDF 303
Query: 278 IPPEE 282
PP+E
Sbjct: 304 EPPKE 308
>gi|302500722|ref|XP_003012354.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
gi|291175912|gb|EFE31714.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
Length = 348
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 211/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RIVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|367002377|ref|XP_003685923.1| 90S preribosome/SSU processome component KRR1 [Tetrapisispora
phaffii CBS 4417]
gi|357524222|emb|CCE63489.1| hypothetical protein TPHA_0E04000 [Tetrapisispora phaffii CBS 4417]
Length = 316
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/312 (54%), Positives = 210/312 (67%), Gaps = 39/312 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD + +ID WK+E F P N GM E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKEKPWDTE-DIDKWKLEDFKPEDNASGMPFSEESSFMTLFPKYREVYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ V+C LNLV+GSMTVSTTRKT DPYII+KARDLI+LL+RSVP PQA+KILDD+M C
Sbjct: 64 LDKHHVACTLNLVDGSMTVSTTRKTYDPYIILKARDLIKLLARSVPFPQAVKILDDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKGLKEI 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K +++
Sbjct: 184 RRVVEDAMRNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKSKKPKRE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP P K+D +ESGEYFLS+++KE K+ E++++QAEK AE +R +I
Sbjct: 244 KKVYTPFPPSQLPRKVDLEIESGEYFLSKKEKEVKRLHERRDQQAEKQAEKDIERSKNYI 303
Query: 279 PPEEPSRQNSCE 290
P+E +S E
Sbjct: 304 APKEEKYVSSIE 315
>gi|326482313|gb|EGE06323.1| ribosomal RNA assembly protein mis3 [Trichophyton equinum CBS
127.97]
Length = 348
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 210/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RIVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE +++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQGKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|409050127|gb|EKM59604.1| hypothetical protein PHACADRAFT_191975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 390
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/350 (48%), Positives = 220/350 (62%), Gaps = 70/350 (20%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDH------WKVEKFDPFWNEGGML-EVSSFS 53
M E E V K+K +H K KPWD D +IDH W+++ F P N+GG E SSF+
Sbjct: 1 MAEAEEALVVNKNK-RHRKDKPWDTD-DIDHVSLWSAWQLDPFKPEDNKGGTFTEESSFA 58
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE+YL+E W V AL+ +G++C L+L+ GSM+V TTR+T DPYII+KARD+I+
Sbjct: 59 TLFPKYRERYLREVWSAVTKALETHGIACTLDLIHGSMSVRTTRRTYDPYIILKARDMIK 118
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+R V QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT C
Sbjct: 119 LLARGVNIGQAVKILDDAIACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQC 178
Query: 174 YILVQI----------------------------------LMVKKELEKDPALANENWDR 199
Y+LVQ LM+K+EL KDPALA E+WDR
Sbjct: 179 YVLVQGSTVSVMGPYKGLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPALATESWDR 238
Query: 200 FLPKFKKKNVK--QKKVKSKE-------------------------KKPYTPFPPPPQPS 232
FLP+F+KK++K +K K E KK YTPFPPP QP
Sbjct: 239 FLPQFRKKHLKTSEKTAKKNEKLAEKNTARETAGLPPIKLTKEEKRKKVYTPFPPPQQPR 298
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
K+D LESGEYFL ++KE+++ + ++EKQ E TAE + KR AF+ P E
Sbjct: 299 KVDVQLESGEYFLKSKEKEAREARRRKEKQEEVTAEKQAKRAEAFVAPAE 348
>gi|212543805|ref|XP_002152057.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066964|gb|EEA21057.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 349
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF TLFP+YRE YL+EAWP++ L
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEDNTGGTFAEESSFMTLFPKYREVYLKEAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVSAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVIEDCMANIHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
+K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E ++R F
Sbjct: 244 SQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKMKERQKDF 303
Query: 278 IPPEE 282
+PP E
Sbjct: 304 VPPTE 308
>gi|400593186|gb|EJP61181.1| rRNA assembly protein Mis3, putative [Beauveria bassiana ARSEF
2860]
Length = 320
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/308 (52%), Positives = 207/308 (67%), Gaps = 40/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
HD+ KPWD + ++D WK+EKF P N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HDRDKPWDTE-DVDKWKIEKFKPEDNAGGTFAEESSFMTLFPKYREVYLREAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKNGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLV NK+RFVKRRQ ++GP+ STLKALE+LT YILV
Sbjct: 124 VIKIRNLVGNKDRFVKRRQRILGPDGSTLKALELLTETYILVHGNTVSVMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 217
LM+K+EL KDP L NE+WDRFLP FK+K + +++ + K
Sbjct: 184 RVVEDCMANIHPIYYIKELMIKRELAKDPELKNESWDRFLPNFKRKTLSRRRTPHNITDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFLS++ K+ E+ EKQ + E ++R+A F
Sbjct: 244 TKKVYTPFPPAPEKSKVDKQIESGEYFLSKQAKQQAARTERLEKQKLRKTEKAKEREADF 303
Query: 278 IPPEEPSR 285
+PPEE R
Sbjct: 304 VPPEEGER 311
>gi|326476732|gb|EGE00742.1| rRNA assembly protein Mis3 [Trichophyton tonsurans CBS 112818]
Length = 348
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 210/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RIVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE +++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQGKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|301119295|ref|XP_002907375.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
gi|262105887|gb|EEY63939.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
Length = 395
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 179/374 (47%), Positives = 239/374 (63%), Gaps = 62/374 (16%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE-------------GGMLEVSSFSTLFP 57
++ K H K KPWD D +IDHWK+ DP+ +E G+LE SSF+TLFP
Sbjct: 18 REEKKNHRKDKPWDSD-DIDHWKI---DPWQDELEDEKDTGKKIKMPGLLEESSFATLFP 73
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YREKYL+E WP+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+R
Sbjct: 74 KYREKYLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLAR 133
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
S+P QA+KILDD++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LV
Sbjct: 134 SIPVNQAVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLV 193
Query: 178 QI----------------------------------LMVKKELEKDPALANENWDRFLPK 203
Q LM+K+EL KDP L +ENW+RFLP
Sbjct: 194 QGNTVSAMGSYHGLRNLRKIVEDCFANVHPIYNVKRLMIKRELAKDPKLKDENWERFLPT 253
Query: 204 FKKKNVK-QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQ 262
FKK+NV+ +K K +EKK YTPFPP P SK+DK +ESGEYF+ E ++++ K +K E +
Sbjct: 254 FKKQNVQTKKPKKVREKKDYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKAKKHEDK 313
Query: 263 AEKTAENKRKRDAAFIPPEEPS-----RQNSCEAEDKTNDVAAMAKSLKEK--AKKLRKQ 315
+ + K + A + P E ++ EA+++ N A ++LK+K +K
Sbjct: 314 LQVLQKRKADKMAEYAAPSEKETSKKRKKQKAEAQEE-NKRATSVEALKQKFLNQKTSDS 372
Query: 316 KFAENINPEEYIAA 329
K A ++N +Y+A
Sbjct: 373 KTAASVN--DYLAV 384
>gi|448511533|ref|XP_003866553.1| Krr1 protein [Candida orthopsilosis Co 90-125]
gi|380350891|emb|CCG21114.1| Krr1 protein [Candida orthopsilosis Co 90-125]
Length = 364
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/310 (52%), Positives = 208/310 (67%), Gaps = 40/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWAIEEFKPEHNASGLHFTEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK--- 217
LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKV K
Sbjct: 184 RRVVEDCMKNIHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVSKKNKA 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP QP K+D +ESGEYFL +R+KE KK QEK+ +Q E + +++R +
Sbjct: 244 EKKVYTPFPPAQQPRKVDLQIESGEYFLGKREKELKKLQEKRAQQEENSELKRQERAKDY 303
Query: 278 IPPEEPSRQN 287
+ PEE +N
Sbjct: 304 VAPEEEDYEN 313
>gi|440790291|gb|ELR11574.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 406
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/374 (49%), Positives = 249/374 (66%), Gaps = 44/374 (11%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T KK+ K+ K KPWD D +IDHWKV+ F P N+ G LE SSF+TLFP+YRE YL+E
Sbjct: 15 TPQKKNHKKYRKDKPWDND-SIDHWKVDAFKPEDNKAGSFLEESSFATLFPKYRESYLRE 73
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
+W + ALK+ G+ C LNL+EGSMTV TTRKT DPY+I+KARD+I+LL+RSVP PQA++
Sbjct: 74 SWAAITKALKDVGIDCTLNLIEGSMTVRTTRKTWDPYMILKARDMIKLLARSVPFPQAVR 133
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
+L D++ CD+IKIG +V NKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQ
Sbjct: 134 VLGDDVACDVIKIGGMVHNKERFVKRRQRLIGPNGATLKAIELLTECYVLVQGNTVSVMG 193
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDP LA ENWDRFLPKFKK NVK+K
Sbjct: 194 PYKGLKQVRNIVEDCMNNIHPIYNIKALMIKRELAKDPQLATENWDRFLPKFKKNNVKKK 253
Query: 213 KVKSK-EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 271
K K EKK YTPFPP QPSK+D LESGEY+L+E +K+ +K +EK +K+ E + K
Sbjct: 254 AAKPKREKKEYTPFPPAQQPSKLDMQLESGEYWLTEAEKKKQKDKEKAQKKWEAKMQKKA 313
Query: 272 KRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASG 331
+R+ AF+ P+E ++ + E+ T ++AA +K++ RK++ A+ E+++ S
Sbjct: 314 EREKAFVAPKEEPKKKEAQKEETTMELAA---KVKQQHANKRKREGAKQAKAEDFVLGSS 370
Query: 332 ----EKPSKKKKSK 341
+ P+ KK+ K
Sbjct: 371 SSKVDAPAAKKQKK 384
>gi|71018315|ref|XP_759388.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
gi|46099113|gb|EAK84346.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
Length = 364
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 209/314 (66%), Gaps = 48/314 (15%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD+D I+HW+V KF +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDDD-TINHWEVPKFSADEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DPYI++KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 EKHGIACTLDLVEGSMTVKTTRKTYDPYIVLKARDMIRLLSRSVPFPQAVKILEDGIECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQ
Sbjct: 138 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVCAMGQFKNLKEVR 197
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKK-------------N 208
LM+K+EL KDP LA ENW+RFLPKFKK+
Sbjct: 198 RIVIDCLKNIHPIYHIKELMIKRELAKDPKLAQENWERFLPKFKKQNQKKKPTTTDAEGE 257
Query: 209 VKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
++ K + K YTPFPPP QPSKID LESGEYFL R+K+ +K KQA+ +
Sbjct: 258 ARKNDKKVIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKQAAEAQKLAKQADHKEK 317
Query: 269 NKRKRDAAFIPPEE 282
+++R AF+PP E
Sbjct: 318 REQERQKAFVPPTE 331
>gi|322706650|gb|EFY98230.1| rRNA assembly protein Mis3, putative [Metarhizium anisopliae ARSEF
23]
Length = 320
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H + KPWD D +ID WK++ F N GG E SSF TLFP+YRE YL+EAWP+V +L
Sbjct: 5 HQQDKPWDTD-DIDKWKIDTFTSKDNVGGTFAEESSFVTLFPKYREVYLKEAWPLVTKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 VIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYKGLKDLR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP L NE+WDRFLP FKKK + + KV K
Sbjct: 184 RIIEDCMANIHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSHRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SKIDK +ESGEYFL++ K+ +E+ EKQ + E ++R+A F
Sbjct: 244 TKKAYTPFPPAPEQSKIDKQIESGEYFLAKGAKDRAAREERNEKQKLRKEEKTKEREAEF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|110289174|gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
Length = 292
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/282 (61%), Positives = 212/282 (75%), Gaps = 38/282 (13%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DEM CDIIKIG+++RNKERFV
Sbjct: 1 MTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------- 179
KRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVEDCIKNIKHPVY 120
Query: 180 ----LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 235
L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +KEKKPYTPFPPP QPSKID
Sbjct: 121 HIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPITKEKKPYTPFPPPQQPSKID 180
Query: 236 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ--NSCEAED 293
LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AAF+PP+E + S ++
Sbjct: 181 LELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAAFVPPKEDTATPYESAKSTS 240
Query: 294 KTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEKP 334
+++A MAKSLK+KAK+ RK + EN+ E Y+A++ G +P
Sbjct: 241 NNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEGSRP 282
>gi|121715638|ref|XP_001275428.1| 90S preribosome/SSU processome component KRR1 [Aspergillus clavatus
NRRL 1]
gi|119403585|gb|EAW14002.1| rRNA assembly protein Mis3, putative [Aspergillus clavatus NRRL 1]
Length = 354
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/305 (53%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD + +ID WK++ F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTE-DIDKWKIDPFKPDDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+K RDLI+LLSRSVP QA+KILDDE+ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKGRDLIKLLSRSVPVQQALKILDDEVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI + VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQ
Sbjct: 124 IIKIRSQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVINDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R AF
Sbjct: 244 SKKAYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRVKREEKMQERAKAF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|366991194|ref|XP_003675363.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
gi|342301227|emb|CCC68994.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
Length = 327
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/316 (53%), Positives = 211/316 (66%), Gaps = 39/316 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P++D W +E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWD-TPDVDKWHIEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LNKHNLGCVLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFQGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K K+
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVRKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK AE + +R+ +I
Sbjct: 244 KKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLHERREQQAEKQAEKEVERNKNYI 303
Query: 279 PPEEPSRQNSCEAEDK 294
PEE + ++S + E K
Sbjct: 304 APEEETYKSSLKKEHK 319
>gi|348690682|gb|EGZ30496.1| hypothetical protein PHYSODRAFT_477367 [Phytophthora sojae]
Length = 396
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 210/314 (66%), Gaps = 46/314 (14%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVE----KFDPFWNEG------GMLEVSSFSTLFPQYREKY 63
K H K KPWD + +IDHWK++ + D N G +LE SSF+TLFP+YREKY
Sbjct: 21 KKNHRKDKPWDSE-DIDHWKIDPWQDEIDDNKNAGKKIKMPNLLEESSFATLFPKYREKY 79
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
L+E WP+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+RS+P Q
Sbjct: 80 LREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQ 139
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----- 178
A+KILDD++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LVQ
Sbjct: 140 AVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVS 199
Query: 179 -----------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL KDP L +ENW+RFLP FKK+NV
Sbjct: 200 AMGSYHGLRNVRKIVEDCFANIHPIYNVKRLMIKRELAKDPKLKDENWERFLPNFKKQNV 259
Query: 210 KQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
+ KK K +K YTPFPP P SK+DK +ESGEYF+ E ++++ K Q+K E++ +
Sbjct: 260 QTKKPKKVREKKEYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKQKKHEEKLRVLQK 319
Query: 269 NKRKRDAAFIPPEE 282
K + A ++ P E
Sbjct: 320 RKADKMAEYVAPSE 333
>gi|345560274|gb|EGX43399.1| hypothetical protein AOL_s00215g135 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 211/305 (69%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID WK+++F P N+GG L+ S F LFP+YRE+YL+EAWP++ L
Sbjct: 5 HNVDKPWDTE-DIDKWKIDEFKPEDNKGGAFLQESDFKVLFPRYREQYLREAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G++ L++VEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ CD
Sbjct: 64 AKSGINAILDVVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKIG+LV N+++F KRRQ +VGPN STLKALE+LTGCYILVQ
Sbjct: 124 IIKIGSLVPNRQKFAKRRQRMVGPNGSTLKALELLTGCYILVQGTTVSAMGGYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDPALANE+WDRFLP+FKKK + ++ KV K
Sbjct: 184 RVVEDCMKNIHPIYHIKELMIKRELAKDPALANESWDRFLPQFKKKTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
+K YTPFPP + SK+D +ESGEYFLS+ +KE ++K+E Q EK + +++R+ F
Sbjct: 244 SRKVYTPFPPAQEKSKVDLQIESGEYFLSKPQKEQAAAEKKEEAQREKKEQRQKEREQDF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|71001580|ref|XP_755471.1| rRNA assembly protein Mis3 [Aspergillus fumigatus Af293]
gi|66853109|gb|EAL93433.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus Af293]
gi|159129540|gb|EDP54654.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus A1163]
Length = 358
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 164/303 (54%), Positives = 206/303 (67%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPEDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVNDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E ++R +F
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKMKERAKSF 303
Query: 278 IPP 280
IPP
Sbjct: 304 IPP 306
>gi|380492294|emb|CCF34707.1| ribosomal RNA assembly protein KRR1 [Colletotrichum higginsianum]
Length = 323
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK++ F P N GG E SSF+ +FP+YRE YL+EAWP+V AL
Sbjct: 5 YKKEKPWDTD-DIDKWKIDTFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + + KV K
Sbjct: 184 RVVEDCMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSSRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+ +
Sbjct: 244 TKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKVERLREREKEY 303
Query: 278 IPPEE 282
IPPEE
Sbjct: 304 IPPEE 308
>gi|145232010|ref|XP_001399471.1| 90S preribosome/SSU processome component KRR1 [Aspergillus niger
CBS 513.88]
gi|134056381|emb|CAK47615.1| unnamed protein product [Aspergillus niger]
gi|350634424|gb|EHA22786.1| hypothetical protein ASPNIDRAFT_55540 [Aspergillus niger ATCC 1015]
Length = 367
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 164/305 (53%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WKVE F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKVEPFQAEDNVAGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIINDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E ++R+ AF
Sbjct: 244 TKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKMKEREKAF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|259479960|tpe|CBF70657.1| TPA: rRNA assembly protein Mis3, putative (AFU_orthologue;
AFUA_2G11380) [Aspergillus nidulans FGSC A4]
Length = 358
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/303 (54%), Positives = 206/303 (67%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 NNKDKPWDTD-DIDKWKIEEFKPEDNAGGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA+E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIVDDCMANIHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R+ AF
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKMKEREKAF 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|119481157|ref|XP_001260607.1| 90S preribosome/SSU processome component KRR1 [Neosartorya fischeri
NRRL 181]
gi|119408761|gb|EAW18710.1| rRNA assembly protein Mis3, putative [Neosartorya fischeri NRRL
181]
Length = 358
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 206/303 (67%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPDDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVNDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E ++R +F
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKMKERAKSF 303
Query: 278 IPP 280
+PP
Sbjct: 304 VPP 306
>gi|67539410|ref|XP_663479.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
gi|40739194|gb|EAA58384.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
Length = 348
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/303 (54%), Positives = 206/303 (67%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 NNKDKPWDTD-DIDKWKIEEFKPEDNAGGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQ
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA+E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIVDDCMANIHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R+ AF
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKMKEREKAF 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|336386044|gb|EGO27190.1| hypothetical protein SERLADRAFT_381537 [Serpula lacrymans var.
lacrymans S7.9]
Length = 386
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 214/343 (62%), Gaps = 64/343 (18%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYRE 61
E E VNK + H K KPWD D +ID WK++ F P N+GG+ E SSF+TLFP+YRE
Sbjct: 2 EGEEPVVNKNKR--HRKDKPWDTD-DIDQWKIDAFQPIDNKGGVFTEESSFATLFPKYRE 58
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V
Sbjct: 59 KYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAI 118
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
QA+K+L D++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 119 SQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGST 178
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+++EL KDP LA E+WDRFLP+F+K+
Sbjct: 179 VSVMGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKR 238
Query: 208 NVKQ--------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLESG 241
++K +K KK YTPFPPP P K+D LESG
Sbjct: 239 HLKTSEKTAKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLESG 298
Query: 242 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
EYFL ++E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 299 EYFLKPHEREAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 341
>gi|302668490|ref|XP_003025816.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
gi|291189945|gb|EFE45205.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
Length = 348
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 210/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG+MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGNMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RIVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK E ++++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRVEKMKEQEKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|327298894|ref|XP_003234140.1| 90S preribosome/SSU processome component KRR1 [Trichophyton rubrum
CBS 118892]
gi|326463034|gb|EGD88487.1| rRNA assembly protein Mis3 [Trichophyton rubrum CBS 118892]
Length = 347
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 210/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFAEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ ++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSCITCTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RIVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKDF 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|295667095|ref|XP_002794097.1| 90S preribosome/SSU processome component KRR1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226286203|gb|EEH41769.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 356
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E W MV AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWLMVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMANIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK R+ F
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKTRELQKDF 303
Query: 278 IPPEE 282
PP+E
Sbjct: 304 EPPKE 308
>gi|430812870|emb|CCJ29739.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 329
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/295 (56%), Positives = 201/295 (68%), Gaps = 35/295 (11%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWK+E F N + SSF+TLFP+YREKYLQE WP V L YG+S
Sbjct: 28 PWDSE-EIDHWKIEPFVEDKNAPSFTDESSFATLFPKYREKYLQEIWPHVTQNLNNYGIS 86
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C L+L+ GSMTV TTRKT+DP I+KARDLI+LL+RSVP PQAIKI+DD M CDIIKIG
Sbjct: 87 CVLDLIVGSMTVKTTRKTKDPCSILKARDLIKLLARSVPFPQAIKIMDDSMACDIIKIGG 146
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------------- 179
+RNKERF+KRRQ ++GPN STLKALE+LT CYI+VQ
Sbjct: 147 FLRNKERFIKRRQRILGPNGSTLKALELLTQCYIMVQGNTVSVMGNYKGLKEVRKIVEDC 206
Query: 180 ------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 227
LM+K+EL KDP L NE+WDRFLP FKK+NV ++K K + K YTPFPP
Sbjct: 207 MKNIHPIYHIKELMIKRELAKDPVLKNESWDRFLPHFKKRNVARRKPKQIKIKEYTPFPP 266
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
P QPSKID +ESGEYF+S+R KE KK +E +EKQA + E ++R AF PP+E
Sbjct: 267 PQQPSKIDLQIESGEYFMSKRAKEKKKREENKEKQARISKERSKERQKAFEPPKE 321
>gi|322700928|gb|EFY92680.1| rRNA assembly protein Mis3, putative [Metarhizium acridum CQMa 102]
Length = 320
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/305 (52%), Positives = 207/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD + +I+ WKV+ F N GG L E SSF+TLFP+YRE YL+EAWP++ +L
Sbjct: 5 HQKDKPWDTE-DINKWKVDTFTSEDNVGGTLAEESSFATLFPKYREVYLKEAWPLITKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 VIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP L NE+WDRFLP FKKK + ++ KV K
Sbjct: 184 RIVEDCMANIHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSRRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFL + K+ +E++EKQ + E ++R+A F
Sbjct: 244 SKKVYTPFPPAPEQSKVDKQIESGEYFLGKEAKDRAAKEERKEKQKLRKEEKTKEREAEF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|319411597|emb|CBQ73641.1| probable KRR1-required for 40S ribosome biogenesis [Sporisorium
reilianum SRZ2]
Length = 354
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/314 (54%), Positives = 206/314 (65%), Gaps = 48/314 (15%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD+D I+HW V KF +G +LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDDD-TINHWDVPKFTADEIKGPLLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++G++C L+LVEGSMTV TTRKT DPY I+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 DKHGIACTLDLVEGSMTVKTTRKTYDPYSILKARDMIRLLSRSVPFPQAVKILEDGVECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQ
Sbjct: 138 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVSAMGQFKNLKEVR 197
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK-- 219
LM+K+EL KDP LA ENWDRFLPKFKK+N K+K S +
Sbjct: 198 RIVIDCLKNIHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKQNQKKKPTASTSEAA 257
Query: 220 -----------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
K YTPFPPP QPSKID LESGEYFL R K+ + +K KQAE
Sbjct: 258 PVPAKKQKPKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRAKKQAEEAKKLAKQAEHKER 317
Query: 269 NKRKRDAAFIPPEE 282
+ R AF+PP E
Sbjct: 318 READRAKAFVPPTE 331
>gi|19112865|ref|NP_596073.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe 972h-]
gi|26396376|sp|O74777.1|KRR1_SCHPO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein mis3
gi|3738208|emb|CAA21263.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe]
gi|5578744|dbj|BAA82594.1| Mis3 [Schizosaccharomyces pombe]
Length = 327
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 174/313 (55%), Positives = 217/313 (69%), Gaps = 38/313 (12%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E W
Sbjct: 14 VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
P V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71 PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------- 179
D + CDIIKIGN++RNKERFVKRRQ L+G N TLKALE+LT CYILVQ
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190
Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 213
LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 191 KGLKEVRRIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKP 250
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
K +E K YTPFPP PSK+D +ESGEYFL + +KE KK EK+E+Q EK E +++R
Sbjct: 251 AKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKER 310
Query: 274 DAAFIPPEEPSRQ 286
AFIPPEE S++
Sbjct: 311 MKAFIPPEESSKK 323
>gi|315052040|ref|XP_003175394.1| 90S preribosome/SSU processome component KRR1 [Arthroderma gypseum
CBS 118893]
gi|311340709|gb|EFQ99911.1| ribosomal RNA assembly protein KRR1 [Arthroderma gypseum CBS
118893]
Length = 327
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 209/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPASILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTSTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFL+++ KE + +E EKQ EK AE ++++ F
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLTKQAKERARKEEIMEKQREKRAEKVKEQEKDF 303
Query: 278 IPPEE 282
IPP+E
Sbjct: 304 IPPKE 308
>gi|425781142|gb|EKV19124.1| RRNA assembly protein Mis3, putative [Penicillium digitatum PHI26]
gi|425783173|gb|EKV21033.1| RRNA assembly protein Mis3, putative [Penicillium digitatum Pd1]
Length = 376
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 203/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K K WD D +ID WK+E+F P N G E SSF TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 HNKEKAWDTD-DIDKWKIEEFKPEHNAAGSFAEESSFMTLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+K+RDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKSRDLIKLLARSVPVTQAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIIDDCMANIHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRRVPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E R+R+ F
Sbjct: 244 EKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKMREREKDF 303
Query: 278 IPPEE 282
+ PEE
Sbjct: 304 VAPEE 308
>gi|389628494|ref|XP_003711900.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|351644232|gb|EHA52093.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|440470939|gb|ELQ39978.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae Y34]
gi|440488292|gb|ELQ68023.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae P131]
Length = 320
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/310 (53%), Positives = 206/310 (66%), Gaps = 40/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID WKV+ F P N GG E SSF TLFP+YRE YL+++WP+V AL
Sbjct: 5 HNVDKPWDTE-DIDKWKVDPFTPSDNAGGTFAEESSFMTLFPKYREVYLRQSWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKYGIATTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERF+KRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 IIKIRNLVRNKERFIKRRQRILGPNGSTLKALELLTSTYILVHGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LMVK+EL KDPALANE+WDRFLP FKK+++ + KV K
Sbjct: 184 RVVEDCMNNVHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YT FPP P+ SK+D +ESGEYFL + K+ E+QE+ K E KR+R+ F
Sbjct: 244 SKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKKRAAETERQEQAKVKKEERKREREKDF 303
Query: 278 IPPEEPSRQN 287
+PPEEP Q
Sbjct: 304 VPPEEPGTQT 313
>gi|392568645|gb|EIW61819.1| hypothetical protein TRAVEDRAFT_143946 [Trametes versicolor
FP-101664 SS1]
Length = 393
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 211/331 (63%), Gaps = 65/331 (19%)
Query: 16 KHDKPKPWDEDPNIDH-WKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDH WK+++F P N+ G E SSF+TLFP+YREKYL+E W V
Sbjct: 17 RHRKEKPWDTD-DIDHSWKIDQFKPEDNKAGPFTEESSFATLFPKYREKYLREVWSAVTQ 75
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL +G+SC L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KI+ D++
Sbjct: 76 ALDTHGISCTLDLIHGSMSVRTTRKTYDPYIILKARDMIKLLARGVAIGQAVKIMSDDIA 135
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CDIIKIGN+VRNKERF+KRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 136 CDIIKIGNVVRNKERFIKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSVMGPYKGLKE 195
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSK 217
LM+K+EL KDP LA E+WDRFLPKF+K+++K +K K
Sbjct: 196 VRRIVLDCMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKTAKKN 255
Query: 218 EK--------------------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 251
E+ K YTPFPPP QP K+D LESGEYFL +KE
Sbjct: 256 ERIQEKDESRKAAGLPTVEEAKKEKKEKKVYTPFPPPQQPRKVDLQLESGEYFLKAHEKE 315
Query: 252 SKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+++ ++++EKQ E TAE + KR F+ PEE
Sbjct: 316 ARENRKRKEKQEEVTAERRAKRAEVFVAPEE 346
>gi|296817933|ref|XP_002849303.1| 90S preribosome/SSU processome component KRR1 [Arthroderma otae CBS
113480]
gi|238839756|gb|EEQ29418.1| ribosomal RNA assembly protein mis3 [Arthroderma otae CBS 113480]
Length = 349
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 210/307 (68%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKNGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPQLAEESWDRFLPQLKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++ +
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKDY 303
Query: 278 IPPEEPS 284
IPP+E +
Sbjct: 304 IPPKEDT 310
>gi|346319385|gb|EGX88987.1| rRNA assembly protein Mis3, putative [Cordyceps militaris CM01]
Length = 363
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 202/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG + SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 47 HKKEKPWDTD-DIDKWKIEQFKPEDNLGGTFTDESSFMTLFPKYREVYLKEAWPLITKAL 105
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 106 EKTGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 165
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
++KI NLV NK RFVKRRQ ++GP STLKALE+LT YILV
Sbjct: 166 VVKIRNLVGNKVRFVKRRQRILGPEGSTLKALELLTETYILVHGNTVSVMGPYKGLKEVR 225
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 217
LM+K+EL KDP L NE+WDRFLP F++K + +++ + K
Sbjct: 226 RIIEDCMANIHPIYHIKELMIKRELAKDPELKNESWDRFLPNFRRKTLSKRRTPHAITDK 285
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +E+GEYFL ++ K E+QE+Q E+ E ++R A F
Sbjct: 286 TKKTYTPFPPAPEKSKVDKQIETGEYFLGKQAKLQAARAERQEQQKERKVEKAKERAADF 345
Query: 278 IPPEE 282
+PPEE
Sbjct: 346 VPPEE 350
>gi|440639323|gb|ELR09242.1| hypothetical protein GMDG_03815 [Geomyces destructans 20631-21]
Length = 386
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 205/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK++ F P N+ G E S+F+TLFP+YRE YL+EAWP+V +L
Sbjct: 5 HKKEKPWDTD-DIDKWKIDAFKPEDNKAGTFTEESTFATLFPKYREVYLREAWPLVTRSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + D
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAPQAVKILEDGVASD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CYILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYILVQGNTVSAMGPYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+N+ ++ KV K
Sbjct: 184 RIIEDCMSNIHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK TPFPPP + SK+D +ESGEYFL++ KE +++ E+Q EK E KR+ F
Sbjct: 244 SKKVRTPFPPPQEKSKVDLQIESGEYFLNKSAKERAVQEDRLERQKEKKIEKLAKREKEF 303
Query: 278 IPPEE 282
P+E
Sbjct: 304 KAPDE 308
>gi|260941444|ref|XP_002614888.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
gi|238851311|gb|EEQ40775.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
Length = 373
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 166/308 (53%), Positives = 206/308 (66%), Gaps = 38/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID WKVE+F P N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWD-TPDIDKWKVEEFKPEDNASGQPFAEESSFMTLFPKYRETYLRSIWSEVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDSHHIACQLDLVEGSMTVKTTRKTFDPAMILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVSNKERFTKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K+P LA+E+W RFLP FKKKNV ++K K+K
Sbjct: 184 RRVVEDCMKNVHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFKKKNVARKKTAIEKKK 243
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPP P K+D +ESGEYFL +R+K K+ QEK+ KQAE T + K +R+ AF
Sbjct: 244 KVYTPFPPAQTPRKVDLQIESGEYFLGKREKHLKELQEKRAKQAEVTEQRKEERNQAFEA 303
Query: 280 PEEPSRQN 287
PEE + +N
Sbjct: 304 PEEEAYEN 311
>gi|365981169|ref|XP_003667418.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
gi|343766184|emb|CCD22175.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
Length = 317
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 165/310 (53%), Positives = 209/310 (67%), Gaps = 39/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + I+ WK+E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTE-EINKWKIEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D+M C
Sbjct: 64 LNTHNLACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILEDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K+
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK E + +R+ ++
Sbjct: 244 KKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLNERREQQAEKQVEKETERNKDYV 303
Query: 279 PPEEPSRQNS 288
P EP+ ++S
Sbjct: 304 APSEPTYKSS 313
>gi|255938969|ref|XP_002560254.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584876|emb|CAP82913.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 372
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 202/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K K WD D +ID WK+E+F P N G E SSF TLFP+YRE+YL+EAWP++ AL
Sbjct: 5 HNKEKAWDTD-DIDKWKIEEFKPEHNAAGSFAEESSFMTLFPKYREQYLKEAWPVITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKARDLIKLLARSVPVTQAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RIIDDCMANIHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRHVPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E R+R+ F
Sbjct: 244 TKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKMREREKDF 303
Query: 278 IPPEE 282
+ PEE
Sbjct: 304 VAPEE 308
>gi|409082561|gb|EKM82919.1| hypothetical protein AGABI1DRAFT_82619 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 388
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 161/333 (48%), Positives = 209/333 (62%), Gaps = 68/333 (20%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +IDHWK++ F N+GG E SSF+TLFP+YREKYL+E W V AL
Sbjct: 15 HRKDKPWDTD-DIDHWKIDPFKQDDNKGGAFTEESSFATLFPKYREKYLREVWSAVTRAL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D+M CD
Sbjct: 74 ETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILEDDMACD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 134 IIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKSLKEVR 193
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-------- 213
LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 194 RIVLDCMKNIHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNER 253
Query: 214 ------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERK 249
K K+KK YTPFPP QP KID LESGEYFL R+
Sbjct: 254 LEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEYFLKARE 313
Query: 250 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
KE+++ ++++Q E T + K++R AFI P E
Sbjct: 314 KEAREVGRRKQEQLEMTTKRKKERAKAFIAPIE 346
>gi|449550042|gb|EMD41007.1| hypothetical protein CERSUDRAFT_103362 [Ceriporiopsis subvermispora
B]
Length = 395
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/348 (47%), Positives = 220/348 (63%), Gaps = 69/348 (19%)
Query: 1 MGENMEKT--VNKKHKGKHDKPKPWDEDPNIDH-WKVEKFDPFWNEGGML-EVSSFSTLF 56
MG+ +E+T VNK + + K KPWD D +IDH WK++ F N+GG E SSF+TLF
Sbjct: 1 MGDVVEETPIVNKNKRFR--KEKPWDTD-DIDHFWKIDPFKVEDNKGGAFTEESSFATLF 57
Query: 57 PQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS 116
P+YREKYL+E W V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+
Sbjct: 58 PKYREKYLREVWSAVTKALESHGIACTLDLIHGSMSVRTTRKTYDPYIILKARDMVKLLA 117
Query: 117 RSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYIL 176
R V QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+L
Sbjct: 118 RGVAIGQAVKILDDTVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVL 177
Query: 177 VQI----------------------------------LMVKKELEKDPALANENWDRFLP 202
VQ LM+K+EL KDP LA E+WDRFLP
Sbjct: 178 VQGSTVSVMGPYKGLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPQLATESWDRFLP 237
Query: 203 KFKKKNVK--QKKVKSKE--------------------------KKPYTPFPPPPQPSKI 234
KF+K+++K +K K E KK YTPFPP QP K+
Sbjct: 238 KFRKRHLKTSEKTAKKNERIQEKNEARQAAGLPTIQEAQKEKPAKKVYTPFPPAQQPRKV 297
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
D LESGEYFL +K++++ ++++EKQ E TAE + KR AF+ P E
Sbjct: 298 DLQLESGEYFLKAHEKQAREDRKRKEKQEEVTAERRAKRAEAFVAPTE 345
>gi|344233678|gb|EGV65550.1| eukaryotic type KH-domain (KH-domain type I) [Candida tenuis ATCC
10573]
gi|344233679|gb|EGV65551.1| hypothetical protein CANTEDRAFT_113171 [Candida tenuis ATCC 10573]
Length = 338
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/307 (51%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W ++F P N G E S+F TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWD-TPDIDKWHQDEFQPEHNASGQPFTEESNFMTLFPKYREQYLRSIWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C+L+LVEGSMTV TT KT DP II+KARDLI+LL+RSVP PQA+K+L D+ C
Sbjct: 64 LDKHHIACQLDLVEGSMTVRTTGKTFDPAIILKARDLIKLLARSVPFPQAVKVLQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
++IKIGN+V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 EVIKIGNVVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYSGLKTV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLPKFKK+NV++KK +EKK
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKQELSKKPELANEDWSRFLPKFKKQNVQRKKAPKREKK 243
Query: 221 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 280
YTPFPP QP KID +ESGEYFL + +K+ K+ EK+EKQ E + +++R + P
Sbjct: 244 VYTPFPPQQQPRKIDMQIESGEYFLRKSEKKQKQMDEKKEKQEEALSAKQQQRQQDYEAP 303
Query: 281 EEPSRQN 287
EE S +N
Sbjct: 304 EEESYEN 310
>gi|254584874|ref|XP_002498005.1| 90S preribosome/SSU processome component KRR1 [Zygosaccharomyces
rouxii CBS 732]
gi|186928977|emb|CAQ43302.1| Ribosomal RNA assembly protein KRR1 [Zygosaccharomyces rouxii]
gi|238940898|emb|CAR29072.1| ZYRO0F18458p [Zygosaccharomyces rouxii]
Length = 314
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 202/304 (66%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD ID W ++F N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTG-EIDKWHQDEFKEEDNASGLPFAEESSFMTLFPKYREAYLKSIWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y V+C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D C
Sbjct: 64 LNKYHVACVLDLVEGSMTVKTTRKTCDPAIILKARDLIKLLARSVPFPQAVKILEDNTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNTVANKERFQKRRQRLVGPNGNTLKALELLTKCYILVQGNTVAAMGNYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--SKE 218
LM+K+EL K P LANE+W RFLP FKK+NV +KK KE
Sbjct: 184 RRVVEDTMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPNFKKRNVARKKPMKIRKE 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP P K+D +ESGEYFL++R+KE+KK +E++EKQAEK E +++R F+
Sbjct: 244 KKVYTPFPPAQTPRKVDLEIESGEYFLNKREKEAKKLEERREKQAEKQEERQKERRKDFL 303
Query: 279 PPEE 282
PP+E
Sbjct: 304 PPKE 307
>gi|307106027|gb|EFN54274.1| hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis]
Length = 424
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/296 (57%), Positives = 208/296 (70%), Gaps = 41/296 (13%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWK+E F N G+LE SSF+TLFP+YREKYL+E WP V ALKE G++
Sbjct: 34 PWDHE-GIDHWKIEPFKKEDNPSGLLEESSFATLFPKYREKYLREVWPAVTKALKEQGIA 92
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
CELNLVEGSMTV TTRKT DP+II+KARDLI+LL+RS A+K+L+DE+QCD+IKIG
Sbjct: 93 CELNLVEGSMTVRTTRKTYDPFIILKARDLIKLLARS-----ALKVLEDEVQCDVIKIGG 147
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
+VRNKE+FVKRRQ L+GPN +TLKALE+LTGCYILVQ
Sbjct: 148 IVRNKEKFVKRRQRLIGPNGATLKALELLTGCYILVQGNTVSAMGDYKGLKQVRRIVEDC 207
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKKPYTPFP 226
LM+K+EL KDPALA ENW+RFLP FKKKNV++KK K +E+K YTPFP
Sbjct: 208 VRNVHPIYHIKTLMIKRELAKDPALAEENWERFLPNFKKKNVQRKKPKKVRERKDYTPFP 267
Query: 227 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
PP PSK D +LESGEYFLS +K ++ + +QA + E +R+R+AAF P E
Sbjct: 268 PPQPPSKEDLMLESGEYFLSAEQKAARAAAAQATRQAARVEERQRQREAAFQAPAE 323
>gi|406865668|gb|EKD18709.1| ribosomal RNA assembly protein KRR1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 350
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/281 (55%), Positives = 195/281 (69%), Gaps = 40/281 (14%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP++ +L
Sbjct: 5 HKKEKPWDTD-DIDKWKIEEFKPDDNAGGTFAEESSFATLFPKYREIYLREAWPLITRSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+LVEGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKYGIACSLDLVEGSMTVKTTRKTFDPAAVLNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKE+FVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 IIKIRNLVRNKEKFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA E+WDRFLP FKK+N+ ++ KV K
Sbjct: 184 RIIEDCMNNIHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 258
KK YTPFPP + SKIDK LESGEYF+ + +E + +E+
Sbjct: 244 SKKVYTPFPPKQEESKIDKQLESGEYFMGKMARERAQREER 284
>gi|149247984|ref|XP_001528379.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448333|gb|EDK42721.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 363
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 203/310 (65%), Gaps = 40/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+ KPWD P+ID W +E+F N G E S F TLFP+YRE+YL+ W V A
Sbjct: 5 HNADKPWDT-PDIDKWAIEEFKEEHNASGEHFAEESLFMTLFPKYREQYLRNIWSYVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+K+L D++ C
Sbjct: 64 LDKHHIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKVLQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK--- 217
LM+K+EL K+P LANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKNIHPIYYIKELMIKQELSKNPELANEDWSRFLPSFKKRNVARKKKTSKKDG 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP QP KID +ESGEYFL ++++E KK QEK+ KQ E + +++R +
Sbjct: 244 EKKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKIQEKRSKQEENSELKRQERAKDY 303
Query: 278 IPPEEPSRQN 287
+ PEE +N
Sbjct: 304 VAPEESEYEN 313
>gi|50304523|ref|XP_452216.1| 90S preribosome/SSU processome component KRR1 [Kluyveromyces lactis
NRRL Y-1140]
gi|49641349|emb|CAH01067.1| KLLA0C00506p [Kluyveromyces lactis]
Length = 330
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 205/303 (67%), Gaps = 38/303 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD D +D W +E+F P N+ G+ E SSF TLFP+YRE YL+ W V +
Sbjct: 5 HNKDKPWDTD-EVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++CELNLVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL+D++ C
Sbjct: 64 LDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K P LA E+W RFLP FKK+NV ++K K KEK
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFKKRNVARKKPKKIKEK 243
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QA K AE + +R FI
Sbjct: 244 KIYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKDFIA 303
Query: 280 PEE 282
P+E
Sbjct: 304 PKE 306
>gi|320163346|gb|EFW40245.1| ribosomal RNA assembly protein mis3 [Capsaspora owczarzaki ATCC
30864]
Length = 363
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 175/312 (56%), Positives = 219/312 (70%), Gaps = 37/312 (11%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T K K + K KPWD D IDHWK+E F N+GG +LE SSF+TLFP+YREKYL+E
Sbjct: 12 TGETKVKRNYRKDKPWDND-TIDHWKIETFTNEDNKGGSLLEESSFATLFPKYREKYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP V AL + G++CEL+L+EGSMTV TT+KT DP+II+KARDLI+LL+RSVP QA+K
Sbjct: 71 VWPHVTKALDDVGIACELDLIEGSMTVRTTKKTFDPFIILKARDLIKLLARSVPLAQALK 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL+D++ CDIIKIGN+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY++VQ
Sbjct: 131 ILEDDVVCDIIKIGNIVRNKERFVKRRQRLLGPNGATLKAIELLTDCYVMVQGNTVAAMG 190
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDPALA E+WDRFLP+FKKKNVKQK
Sbjct: 191 GYKGLKEVRRIVEDCLHNVHPIYNIKTLMIKRELAKDPALATESWDRFLPQFKKKNVKQK 250
Query: 213 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
K K +K+ TPFPP PQPSKID LESGEYFL E + ++ QE++E+QAE + +
Sbjct: 251 KPKITKKE-KTPFPPLPQPSKIDLQLESGEYFLKEDDRRAQLRQEREERQAEAAEAKRSQ 309
Query: 273 RDAAFIPPEEPS 284
R+ AF P EP+
Sbjct: 310 REKAFEAPAEPA 321
>gi|310792085|gb|EFQ27612.1| ribosomal RNA assembly protein KRR1 [Glomerella graminicola M1.001]
Length = 324
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/305 (53%), Positives = 205/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK++ F P N GG E SSF+ +FP+YRE YL+EAWP+V AL
Sbjct: 5 YKKEKPWDTD-DIDKWKIDAFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKKK + Q+ KV K
Sbjct: 184 RVVEDCMANIHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSQRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+ F
Sbjct: 244 SKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKEERLREREKEF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|451848013|gb|EMD61319.1| hypothetical protein COCSADRAFT_201760 [Cochliobolus sativus
ND90Pr]
Length = 344
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 160/303 (52%), Positives = 203/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N+ G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNKAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ D
Sbjct: 64 QRLGIGCELNLVEGSMTVWTTKKTYDPAAILNARDLIKLLARSVPAPQAIKILEDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYKGLKQVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+KKEL KDP LANE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIIEDTMHNIHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +++R A +
Sbjct: 244 SKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKRKERMAEY 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|414880760|tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 294
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 210/283 (74%), Gaps = 43/283 (15%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILDDEM CDIIKIG LVRNKERFV
Sbjct: 1 MTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------- 179
KRR+ L+GPN STLKA+EILTGCYILVQ
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYRGRGLKQVRRIVEDCMKNVKHP 120
Query: 180 ------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 233
L++K+EL K+PALANENWDRFLPKFKKKNVKQKK ++KEKKPYTPFPPP QPSK
Sbjct: 121 VYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQKKPQTKEKKPYTPFPPPQQPSK 180
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE----PSRQNSC 289
ID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRKR+AAF+PP+E PS+ +
Sbjct: 181 IDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRKREAAFVPPKENTAGPSKSDKN 240
Query: 290 EAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 332
+++ +++A +AKSLK KAK+ RK + E++ E YIA++ E
Sbjct: 241 ASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIASNDE 281
>gi|256270959|gb|EEU06085.1| Krr1p [Saccharomyces cerevisiae JAY291]
Length = 316
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEA 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>gi|6319791|ref|NP_009872.1| Krr1p [Saccharomyces cerevisiae S288c]
gi|140400|sp|P25586.1|KRR1_YEAST RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548400|sp|B3LU25.1|KRR1_YEAS1 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548401|sp|B5VEQ2.1|KRR1_YEAS6 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548402|sp|C8Z430.1|KRR1_YEAS8 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548403|sp|E7LRT8.1|KRR1_YEASV RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548404|sp|E7QBZ1.1|KRR1_YEASZ RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|5300|emb|CAA42386.1| KRR1 [Saccharomyces cerevisiae]
gi|51013297|gb|AAT92942.1| YCL059C [Saccharomyces cerevisiae]
gi|151943775|gb|EDN62075.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406389|gb|EDV09656.1| ribosomal RNA assembly protein mis3 [Saccharomyces cerevisiae
RM11-1a]
gi|207347410|gb|EDZ73592.1| YCL059Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259144881|emb|CAY78146.1| Krr1p [Saccharomyces cerevisiae EC1118]
gi|285810642|tpg|DAA07426.1| TPA: Krr1p [Saccharomyces cerevisiae S288c]
gi|323338580|gb|EGA79798.1| Krr1p [Saccharomyces cerevisiae Vin13]
gi|323356023|gb|EGA87829.1| Krr1p [Saccharomyces cerevisiae VL3]
gi|365766811|gb|EHN08304.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 316
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>gi|349576691|dbj|GAA21861.1| K7_Krr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 314
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>gi|302413862|ref|XP_003004763.1| 90S preribosome/SSU processome component KRR1 [Verticillium
albo-atrum VaMs.102]
gi|261355832|gb|EEY18260.1| ribosomal RNA assembly protein KRR1 [Verticillium albo-atrum
VaMs.102]
Length = 319
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/303 (53%), Positives = 201/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD + +ID WKVE F P N GG +E SSFS LFP+YRE YL+EAWP+V +L
Sbjct: 4 HEKDKPWDTE-DIDKWKVETFKPTDNVGGSFVEESSFSVLFPKYREVYLKEAWPLVTKSL 62
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 63 EKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILEDGVACD 122
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV
Sbjct: 123 IIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEVR 182
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP F KK + + KV K
Sbjct: 183 RIAIQTMDNIHPIYAIKQLMIKRELAKDPELANESWDRFLPDFGKKTLSHRRVPHKVSDK 242
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFL + K QE+ E Q +K E +KR+ +
Sbjct: 243 SKKVYTPFPPAPEKSKVDKQIESGEYFLGKEAKARAVAQERVESQKQKKEEKLQKREREY 302
Query: 278 IPP 280
+ P
Sbjct: 303 VAP 305
>gi|392300798|gb|EIW11888.1| Krr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 316
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
+ PEE
Sbjct: 304 VAPEE 308
>gi|156847828|ref|XP_001646797.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117478|gb|EDO18939.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 338
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 164/322 (50%), Positives = 212/322 (65%), Gaps = 39/322 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD + +ID WKVE+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTE-DIDKWKVEEFKPEDNASGLPFAEESSFMTLFPKYREIYLKSVWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DPY I+KARDLI+LL+RSVP PQAIKIL+D+M C
Sbjct: 64 LDKRHIACTLDLVEGSMTVKTTRKTFDPYAILKARDLIKLLARSVPFPQAIKILEDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSCMGPFKGLKEI 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LA+E+W RFLP FKK+NV +KK +K+
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELAKRPELADEDWSRFLPMFKKRNVARKKAAKPKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP QP K+D +ESGEYFLS+++KE K+ QE++E+Q++K E +++R ++
Sbjct: 244 KKVYTPFPPAQQPRKVDLEIESGEYFLSKKEKEVKRLQERREEQSQKQIEKEKERSKDYV 303
Query: 279 PPEEPSRQNSCEAEDKTNDVAA 300
P E +++ K ++
Sbjct: 304 APMEEEYKSTITKSSKKRSIST 325
>gi|46123651|ref|XP_386379.1| hypothetical protein FG06203.1 [Gibberella zeae PH-1]
Length = 426
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 203/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID W++E F P N GG E SSF+TLFP+YRE YL+E WP++ AL
Sbjct: 111 HNVAKPWDTE-DIDKWRIEPFLPKDNVGGPFTEESSFATLFPKYRESYLKEVWPLITRAL 169
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSM V T+ +T DP I+KARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 170 EKLGIACSLDLIEGSMVVKTSLRTHDPSSILKARDLIKLLARSVPAPQAIKILEDGIACD 229
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI N V +KERFVKRRQ L+GPN +TLKALE+LT YILV
Sbjct: 230 IIKIRNQVASKERFVKRRQRLLGPNGTTLKALELLTKTYILVHGNTVSVMGPYKGLKEIR 289
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
M+K+EL KDP LANE+WDRFLP FK+K + Q+ KV K
Sbjct: 290 RVVEDCMANIHPIYHIKEAMIKQELAKDPELANESWDRFLPNFKRKTLSQRRVPHKVNDK 349
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E ++R+A F
Sbjct: 350 AKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKAKEREADF 409
Query: 278 IPPEE 282
I PEE
Sbjct: 410 IAPEE 414
>gi|50285113|ref|XP_444985.1| 90S preribosome/SSU processome component KRR1 [Candida glabrata CBS
138]
gi|49524288|emb|CAG57885.1| unnamed protein product [Candida glabrata]
Length = 337
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/311 (53%), Positives = 207/311 (66%), Gaps = 41/311 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD + +ID WK+E+F P N+ G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 YNKDKPWDTE-DIDKWKIEEFKPEDNKSGQPFAEESSFMTLFPKYREAYLKSIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIGCTLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNTVANKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEI 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK---KVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV +K KVK+
Sbjct: 184 RRVVLDCMKNVHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPSKVKA- 242
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+++KE KK E++EKQAEK +R +
Sbjct: 243 EKKVYTPFPPAQLPRKVDLQIESGEYFLSKKEKEIKKLHEQREKQAEKQILKDEERRKDY 302
Query: 278 IPPEEPSRQNS 288
I P+E ++S
Sbjct: 303 IAPKEDEYKSS 313
>gi|325187444|emb|CCA21982.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 408
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 213/323 (65%), Gaps = 47/323 (14%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 32 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 89
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 90 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 149
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 150 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 209
Query: 175 ILVQI----------------------------------LMVKKELEKDPALANENWDRF 200
ILVQ LM+K+EL KD AL NENWDRF
Sbjct: 210 ILVQGNTVAAMGSYQGLRSVRNIVEDCFANIHPIYNVKRLMIKRELAKDEALRNENWDRF 269
Query: 201 LPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQ 259
LP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+
Sbjct: 270 LPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKK 329
Query: 260 EKQAEKTAENKRKRDAAFIPPEE 282
+ E + K ++ A F+ P +
Sbjct: 330 ASKEEVIQQRKSEKKAGFVAPSD 352
>gi|325187445|emb|CCA21983.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 417
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 213/323 (65%), Gaps = 47/323 (14%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 41 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 98
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 99 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 158
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 159 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 218
Query: 175 ILVQI----------------------------------LMVKKELEKDPALANENWDRF 200
ILVQ LM+K+EL KD AL NENWDRF
Sbjct: 219 ILVQGNTVAAMGSYQGLRSVRNIVEDCFANIHPIYNVKRLMIKRELAKDEALRNENWDRF 278
Query: 201 LPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQ 259
LP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+
Sbjct: 279 LPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKK 338
Query: 260 EKQAEKTAENKRKRDAAFIPPEE 282
+ E + K ++ A F+ P +
Sbjct: 339 ASKEEVIQQRKSEKKAGFVAPSD 361
>gi|325187446|emb|CCA21984.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 377
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 213/323 (65%), Gaps = 47/323 (14%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 1 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 58
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 59 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 118
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 119 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 178
Query: 175 ILVQ----------------------------------ILMVKKELEKDPALANENWDRF 200
ILVQ LM+K+EL KD AL NENWDRF
Sbjct: 179 ILVQGNTVAAMGSYQGLRSVRNIVEDCFANIHPIYNVKRLMIKRELAKDEALRNENWDRF 238
Query: 201 LPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQ 259
LP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK+
Sbjct: 239 LPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREKK 298
Query: 260 EKQAEKTAENKRKRDAAFIPPEE 282
+ E + K ++ A F+ P +
Sbjct: 299 ASKEEVIQQRKSEKKAGFVAPSD 321
>gi|426200426|gb|EKV50350.1| hypothetical protein AGABI2DRAFT_190677 [Agaricus bisporus var.
bisporus H97]
Length = 392
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/335 (47%), Positives = 209/335 (62%), Gaps = 68/335 (20%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK++ F N+GG E SSF+TLFP+YREKYL+E W V AL
Sbjct: 15 HRKDKPWDTD-DIDQWKIDPFKQDDNKGGAFTEESSFATLFPKYREKYLREVWSAVTRAL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D+M CD
Sbjct: 74 ETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILEDDMACD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 134 IIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKSLKEVR 193
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-------- 213
LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 194 RIVLDCMKNIHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNER 253
Query: 214 ------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERK 249
K K+KK YTPFPP QP KID LESGEYFL R+
Sbjct: 254 LEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEYFLKARE 313
Query: 250 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
KE+++ ++++Q E T + K++R AF+ P E +
Sbjct: 314 KEAREVGRRKQEQLEMTNKRKKERAKAFVAPIETA 348
>gi|254565757|ref|XP_002489989.1| 90S preribosome/SSU processome component KRR1 [Komagataella
pastoris GS115]
gi|238029785|emb|CAY67708.1| Essential nucleolar protein required for the synthesis of 18S rRNA
[Komagataella pastoris GS115]
gi|328350400|emb|CCA36800.1| Ribosomal RNA assembly protein KRR1 [Komagataella pastoris CBS
7435]
Length = 314
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/308 (52%), Positives = 207/308 (67%), Gaps = 38/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P++D W+ ++F N G E SSF TLFP+YRE+YL++AW V A
Sbjct: 4 HEKDKPWDT-PDVDKWRQDEFKEEDNVSGQPFAEESSFVTLFPKYREQYLKQAWGDVAKA 62
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + + CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 63 LNAHHIGCELNLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPLPQAVKILQDDISC 122
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIG + NKERF KRRQ LVGPN +TLKALE+LTGCYILVQ
Sbjct: 123 DVIKIGGNLDNKERFTKRRQRLVGPNGNTLKALELLTGCYILVQGNTVSVMGPFKGLKEV 182
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K P L NE+W RFLP F+K+NV ++ K+ KEK
Sbjct: 183 RRVVEDCMKNVHPIYHIKELMIKRELAKKPELVNEDWSRFLPMFRKRNVARKNKISKKEK 242
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
KPYTPFPP +P K+D +ESGEYFL +R K++K+ QEK++KQ E T + + R+ ++
Sbjct: 243 KPYTPFPPQQKPRKVDLQIESGEYFLGDRAKKAKELQEKRDKQQEVTDKKRDDRNKGYVA 302
Query: 280 PEEPSRQN 287
PEE R+N
Sbjct: 303 PEEEHRKN 310
>gi|298708603|emb|CBJ26090.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 398
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/276 (55%), Positives = 200/276 (72%), Gaps = 35/276 (12%)
Query: 41 WNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTR 100
+ + G+LE SSF+TLFP+YREKYL+E WP+V AL++ GVSCEL+L+EGSMTV TTRKTR
Sbjct: 27 FAQSGLLEESSFATLFPKYREKYLREVWPIVTKALQKRGVSCELDLIEGSMTVRTTRKTR 86
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPN 160
DPY+IVKARDLI+LL+RS+PA QA+++L+D++ CDIIKIG +VRNKERFVKRR LVGP+
Sbjct: 87 DPYVIVKARDLIKLLARSIPAQQALRVLEDDVNCDIIKIGGMVRNKERFVKRRARLVGPD 146
Query: 161 SSTLKALEILTGCYILVQ----------------------------------ILMVKKEL 186
STLKALE+LTGCY+LVQ LM+++EL
Sbjct: 147 GSTLKALELLTGCYVLVQGNTVSAMGSYQGLKQVRKVVTDCMNNVHPVYNIKTLMIRREL 206
Query: 187 EKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
KDP L +ENW+RFLP+F KKNVK+KK +EKK YTPFPP P K+D+ LESGE+FL
Sbjct: 207 AKDPNLKDENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFL 266
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
+ER++++KK EK+ K AE +A ++ R+ P E
Sbjct: 267 NERQRKAKKRAEKKAKSAELSAAKRKNREQDLEPTE 302
>gi|239614293|gb|EEQ91280.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ER-3]
gi|327356334|gb|EGE85191.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 210/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA++IL+D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALQILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ + F
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKKKELEKDF 303
Query: 278 IPPEE 282
+PP+E
Sbjct: 304 VPPKE 308
>gi|365761869|gb|EHN03495.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840079|gb|EJT43000.1| KRR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 316
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 203/307 (66%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNREKPWDTD-DIDKWKIEEFKEEDNGSGQPFAEESSFMTLFPKYREGYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKRDKQVKKLNEQKEKQMERELERQEERAKDF 303
Query: 278 IPPEEPS 284
PEE S
Sbjct: 304 TAPEEES 310
>gi|225559135|gb|EEH07418.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus G186AR]
Length = 352
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 209/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ + F
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKDF 303
Query: 278 IPPEE 282
+PP+E
Sbjct: 304 VPPKE 308
>gi|321477353|gb|EFX88312.1| hypothetical protein DAPPUDRAFT_305506 [Daphnia pulex]
Length = 343
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 157/321 (48%), Positives = 210/321 (65%), Gaps = 40/321 (12%)
Query: 29 IDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 86
++ WK++ +F N G+LE SSF+TLFP+YRE YL+E WP+VK AL EY + EL++
Sbjct: 17 VNAWKMKLPEFKQEHNPHGLLEESSFATLFPKYREIYLRECWPLVKKALGEYNIKAELDV 76
Query: 87 VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNK 146
+EGSMTV T+RKT DPYII+KARD+++LL+RSVP QA+KIL+D++ CDIIKIG +NK
Sbjct: 77 IEGSMTVKTSRKTWDPYIILKARDMVKLLARSVPYEQAVKILNDDVACDIIKIGTQTQNK 136
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQ---------------------------- 178
+RFVKRRQ L+GPN STLKALE+LT CYILVQ
Sbjct: 137 DRFVKRRQRLIGPNGSTLKALELLTNCYILVQGNTVSAVGPYRGLQQVRRVVEDTMENIH 196
Query: 179 ------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQ 230
LM+K+EL +D L NE+W+RFLP KN ++K K + KK YTPFPP P
Sbjct: 197 PIYHIKALMIKRELARDEKLKNESWERFLPTIPHKNTSKRKQPAKKRAKKEYTPFPPAPP 256
Query: 231 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCE 290
SK+DKLL +GEYFL E +++ +K E QEKQ + K +R++AFIPP+EPS + +
Sbjct: 257 ESKVDKLLATGEYFLKEDQRKQRKKNENQEKQEQAEVRRKERRESAFIPPQEPSTSSGAK 316
Query: 291 AEDKTNDVAAMAKSLKEKAKK 311
T+D+ + LK K +K
Sbjct: 317 EFTSTSDIN--VEELKNKIRK 335
>gi|330919489|ref|XP_003298637.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora teres f.
teres 0-1]
gi|311328077|gb|EFQ93271.1| hypothetical protein PTT_09405 [Pyrenophora teres f. teres 0-1]
Length = 343
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 202/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 QKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKQVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIVEDTMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +R+R +
Sbjct: 244 TKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREDKMKDKMDAKRRERMQEY 303
Query: 278 IPPEE 282
+ P+E
Sbjct: 304 VAPDE 308
>gi|402226410|gb|EJU06470.1| hypothetical protein DACRYDRAFT_45074 [Dacryopinax sp. DJM-731 SS1]
Length = 397
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 217/359 (60%), Gaps = 80/359 (22%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQY 59
M + + VNK + + DKP WD D +IDHWKV+ F+ N+GG L+ SSF+TLFP+Y
Sbjct: 1 MSDTEQVEVNKNKRFRKDKP--WDTD-DIDHWKVDTFEAADNKGGTFLQESSFATLFPKY 57
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+E W +V +L+ +G++C L+L+ GSM+V TTRKT DPYII KARD+I+LL+R V
Sbjct: 58 REKYLREVWGVVTTSLEAHGIACMLDLIHGSMSVRTTRKTFDPYIIFKARDMIKLLARGV 117
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI 179
QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 118 AVGQAVKILDDAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 177
Query: 180 ----------------------------------LMVKKELEKDPALANENWDRFLPKFK 205
LM+++EL KDP LANE+WDRFLPKF+
Sbjct: 178 NTVSVMGPYKSLKEVRRIVIDCMNNIHPIYRIKELMIRRELAKDPKLANESWDRFLPKFR 237
Query: 206 KKNVKQKKVKSKEK------------------------------------------KPYT 223
K+N+ + +K++ K YT
Sbjct: 238 KRNLTSAEKSAKKRARDEGEEAQNGAQEAFPKEEDQAESSTAPPKEEKKEKKEKKKKTYT 297
Query: 224 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
PFPP PSK+D LE+GEYFL + +K ++ Q+++E Q E + KR+R+ AF+ P+E
Sbjct: 298 PFPPAQLPSKVDIALETGEYFLKKHEKVRREVQKREEVQQEVVRKRKREREEAFVAPKE 356
>gi|342883805|gb|EGU84227.1| hypothetical protein FOXB_05184 [Fusarium oxysporum Fo5176]
Length = 320
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 208/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H++PKPWD ++D WK++ F P N GG LE SSFS LFP+YRE YL+EAWP+V AL
Sbjct: 5 HERPKPWDTG-DVDKWKIDAFTPKDNVGGTFLEESSFSLLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMAVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI L +KE FVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 VIKIRGLCGSKESFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+K+EL KDP LANE+WDRFLP FKK+++ + KV K
Sbjct: 184 RVVEDCMQNVHPIYHIKEMMIKRELAKDPELANESWDRFLPNFKKRSLSHRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +E+GEYFL++ K+ +E++EKQ+++ E ++R+A F
Sbjct: 244 TKKTYTPFPPAPEKSKVDKQIETGEYFLAKGDKKRALHEERKEKQSKRKEEKAKEREAEF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|240282060|gb|EER45563.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H143]
gi|325088198|gb|EGC41508.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H88]
Length = 351
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 209/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFRPEHNAGGTFTEQSSFVSLFPKYREAYLKEIWPMITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ + F
Sbjct: 244 RKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKDF 303
Query: 278 IPPEE 282
+PP+E
Sbjct: 304 VPPKE 308
>gi|169774963|ref|XP_001821949.1| 90S preribosome/SSU processome component KRR1 [Aspergillus oryzae
RIB40]
gi|83769812|dbj|BAE59947.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 201/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEPFKSEDNVAGSFAEESSFATLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 IIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 KVVNDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E ++R AF
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKMKERAKAF 303
Query: 278 IPP 280
+PP
Sbjct: 304 VPP 306
>gi|238496401|ref|XP_002379436.1| 90S preribosome/SSU processome component KRR1 [Aspergillus flavus
NRRL3357]
gi|220694316|gb|EED50660.1| rRNA assembly protein Mis3, putative [Aspergillus flavus NRRL3357]
gi|391868875|gb|EIT78084.1| rRNA processing protein [Aspergillus oryzae 3.042]
Length = 361
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 201/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEPFKSEDNVAGSFAEESSFATLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 IIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 KVVNDCMANIHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E ++R AF
Sbjct: 244 SKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKMKERAKAF 303
Query: 278 IPP 280
+PP
Sbjct: 304 VPP 306
>gi|357120775|ref|XP_003562100.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 349
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 171/300 (57%), Positives = 207/300 (69%), Gaps = 52/300 (17%)
Query: 21 KPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGV 80
KPWD+DP+I WK+EKFDP WN+GGMLEVSSFST FP+Y EKYLQEAWP V+GAL+++GV
Sbjct: 18 KPWDDDPDIGRWKMEKFDPSWNKGGMLEVSSFSTRFPRYEEKYLQEAWPTVQGALRDFGV 77
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
+CELNLV+ +TVSTTRKTRDPYII+KARDLI LL+R VPAPQAIKILDDEM CDIIKI
Sbjct: 78 TCELNLVKECITVSTTRKTRDPYIIIKARDLIVLLARGVPAPQAIKILDDEMTCDIIKIR 137
Query: 141 NLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------------- 179
N++RN ERFV+RR+ ++GPN ST KA+EILTGCYILVQ
Sbjct: 138 NIIRNNERFVRRRRRILGPNLSTRKAIEILTGCYILVQGGTVAAMGPSNGRGLKQVRRIV 197
Query: 180 ----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY- 222
L++K+E K+ +ANE+WDR +K+KKPY
Sbjct: 198 EDCMKNIKHPMYHIKDLLIKREQAKNATVANESWDR--------------TNAKQKKPYA 243
Query: 223 TPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
P PP PSKID LES EYFLS+ K +K+ QEK KQ+EK NKRKR+AA +PP+E
Sbjct: 244 APSLPPQTPSKIDLELESEEYFLSDENKSAKERQEKLGKQSEKVHGNKRKREAALVPPKE 303
>gi|170106401|ref|XP_001884412.1| 90S preribosome/SSU processome component KRR1 [Laccaria bicolor
S238N-H82]
gi|164640758|gb|EDR05022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 410
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 166/366 (45%), Positives = 216/366 (59%), Gaps = 82/366 (22%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDH----------------WKVEKFDPFWNEG 44
M ++ E V+K H K KPWD D +IDH WKV+ F P N+
Sbjct: 1 MSDSGEPVVSKNKA--HRKDKPWDTD-DIDHVSYLLPRVGSSRTYWQWKVDPFQPTDNKA 57
Query: 45 GML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
G E SSF+TLFP+YREKYL+E W V AL +GV+C L+LV GSM+V TTRKT DPY
Sbjct: 58 GAFTEESSFATLFPKYREKYLREVWSAVTRALDTHGVACTLDLVHGSMSVKTTRKTYDPY 117
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KARD+I+LL+R V QA+KILDD + CDIIKIG LVRNKERFVKRRQ ++GP+ ST
Sbjct: 118 IILKARDMIKLLARGVAVSQAVKILDDAVACDIIKIGTLVRNKERFVKRRQRIIGPDGST 177
Query: 164 LKALEILTGCYILVQI----------------------------------LMVKKELEKD 189
LKA+E+LT CY+LVQ LM+++EL KD
Sbjct: 178 LKAIELLTNCYVLVQGSTVSVMGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIRRELAKD 237
Query: 190 PALANENWDRFLPKFKKKNVK--QKKVKSKE--------------------------KKP 221
P LA E+WDRFLP+F+K+++K +K K E KK
Sbjct: 238 PKLATESWDRFLPQFRKRHLKTSEKTAKKNEKLEGKKEAWKAAGMGAEEIAKKEKPAKKV 297
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPP QP K+D LESGEYFL ++E+++ +++++KQAE T + + +R AFI P
Sbjct: 298 YTPFPPAQQPRKVDLQLESGEYFLKATEREAQETEKRKQKQAETTEKRRAERAEAFIAPV 357
Query: 282 EPSRQN 287
E + Q
Sbjct: 358 EKAEQT 363
>gi|189189298|ref|XP_001930988.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972594|gb|EDU40093.1| ribosomal RNA assembly protein mis3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 159/303 (52%), Positives = 200/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 QKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKQVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIVEDTMHNVHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +R+R +
Sbjct: 244 TKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKRRERMQEY 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|402083986|gb|EJT79004.1| ribosomal RNA assembly protein KRR1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 320
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 203/307 (66%), Gaps = 40/307 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WKV+ F P N GG E SSF TLFP+YRE YL++ WP+V AL
Sbjct: 5 YKKDKPWDTD-DIDKWKVDPFTPADNTGGTFAEESSFVTLFPKYREVYLRQCWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 ERHGIATTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
I+KI NLV NKERFVKRRQ ++GPN STLKALE+LT YILV
Sbjct: 124 IVKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTSTYILVHGNTVSVMGPFKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LMVK+EL KDPALANE+WDRFLP FKK+++ + KV K
Sbjct: 184 RVVEDCMANIHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YT FPP P+ SK+D +ESGEYFL + K+ E+QEK E+ E KR+R+ F
Sbjct: 244 SKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKQRAAEAERQEKAKERKEERKREREKDF 303
Query: 278 IPPEEPS 284
+PPEEP
Sbjct: 304 VPPEEPG 310
>gi|429849292|gb|ELA24695.1| rRNA assembly protein [Colletotrichum gloeosporioides Nara gc5]
Length = 323
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 206/305 (67%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WKV+ F P N GG E SSF+ +FP+YRE YL+EAWP+V +L
Sbjct: 5 YKKDKPWDTD-DIDKWKVDPFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILDD + CD
Sbjct: 64 EKHGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI +LVRNKER+VKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRSLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPYKGLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP LA+E+WDRFLP FKKK + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKELMIKRELAKDPELASESWDRFLPNFKKKTLSKRRVPLKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+ F
Sbjct: 244 AKKTYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERIEQQKQKKEEKLREREKDF 303
Query: 278 IPPEE 282
+PPEE
Sbjct: 304 VPPEE 308
>gi|403339159|gb|EJY68829.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
gi|403343284|gb|EJY70967.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
Length = 383
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 208/311 (66%), Gaps = 38/311 (12%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD DP +D WKV++F P N G+LE SSF+ LFPQYREKY++E WP+VK AL
Sbjct: 29 KYRKEKPWDNDPTLDKWKVDQFKPEDNPSGVLEESSFAVLFPQYREKYIKEVWPLVKKAL 88
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQC 134
++ + EL+L+EGSMTV TT++T DPY I+KARDLI+LL+RSVP QA+KIL DD M C
Sbjct: 89 SKFKIIGELDLIEGSMTVKTTKQTWDPYSIIKARDLIKLLARSVPYQQAVKILEDDNMFC 148
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
DIIKIG LVRNKE+FVKRRQ L+GPN TLKALE+LT CYILVQ
Sbjct: 149 DIIKIGGLVRNKEKFVKRRQRLIGPNGMTLKALELLTNCYILVQGNTVSSMGYFRELKSV 208
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K+P +A ENWDRFLP FKK+NVK+K+ K KK
Sbjct: 209 RRIVLDTMRNTHPIYNIKELMIKRELAKNPEMAGENWDRFLPHFKKQNVKRKQKKIDTKK 268
Query: 221 P---YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
YTPFPP Q K D + +GEYFLSE+ K++ ++++K+ + +K E +++ F
Sbjct: 269 KGDNYTPFPPEQQLRKEDYQMMTGEYFLSEQAKKNIEFEKKRGIKEQKKQEKIDQKNKQF 328
Query: 278 IPPEEPSRQNS 288
+ P+E + S
Sbjct: 329 VAPDEDQEKES 339
>gi|346472733|gb|AEO36211.1| hypothetical protein [Amblyomma maculatum]
Length = 349
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 195/278 (70%), Gaps = 36/278 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+L S+F+TLFP+YREKYL+E WP+VK L E+G++ EL+++EGSMTV+TTRK D
Sbjct: 30 NPHGVLCESAFATLFPKYREKYLRECWPLVKKTLAEHGITAELDVIEGSMTVTTTRKMWD 89
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D++ CDI+KIG LVRN+ERFVKRRQ L+GPN
Sbjct: 90 PYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIVKIGRLVRNRERFVKRRQRLIGPNG 149
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLKA+E+LT CY+LVQ LM+K+EL
Sbjct: 150 TTLKAIELLTNCYVLVQGNTVSALGPYKGLQHVRKIVEDTMKNIHPVYNIKALMIKRELA 209
Query: 188 KDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
KDP L NENWDRFLP FK + + ++K K + K YTPFPPP SK+DK L SGEYFL
Sbjct: 210 KDPNLRNENWDRFLPHFKAQTLSKRKKPKKQRTKGEYTPFPPPQPESKMDKELASGEYFL 269
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 283
E ++++KK QEKQ+ +AE + + +R+ +F PP+EP
Sbjct: 270 KEHERKAKKAQEKQQAKAEAEVKRQERRNKSFQPPQEP 307
>gi|261204337|ref|XP_002629382.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
dermatitidis SLH14081]
gi|239587167|gb|EEQ69810.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis
SLH14081]
Length = 352
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/305 (53%), Positives = 209/305 (68%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPA QA++IL+D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPALQALQILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQ
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K
Sbjct: 184 RVVEDCMNNIHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ + F
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKKKELEKDF 303
Query: 278 IPPEE 282
+PP+E
Sbjct: 304 VPPKE 308
>gi|255715898|ref|XP_002554230.1| 90S preribosome/SSU processome component KRR1 [Lachancea
thermotolerans CBS 6340]
gi|238935613|emb|CAR23793.1| KLTH0F00506p [Lachancea thermotolerans CBS 6340]
Length = 332
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/311 (53%), Positives = 207/311 (66%), Gaps = 40/311 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P+ID WK+E+F P N GM E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDT-PDIDKWKIEEFKPEDNVSGMPFAEESSFMTLFPKYREAYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTR+T DP II+KARDLI+LL+RSVP PQA+KIL D+ C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRRTYDPAIILKARDLIKLLARSVPFPQAVKILQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK---VKSK 217
LM+K+EL K P LA E+W RFLP FKK+NV +KK +K K
Sbjct: 184 RRVVEDCMRNIHPIYHIKELMIKRELAKRPDLAEEDWSRFLPMFKKRNVARKKPKNIKPK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
E K YTPFPP QP KID +ESGEYFL++++KE+KK +E++ +QAEK E ++R +
Sbjct: 244 ENKVYTPFPPAQQPRKIDLQIESGEYFLTKKEKEAKKLEERKREQAEKQVEKNKERAKDY 303
Query: 278 IPPEEPSRQNS 288
+ P E + S
Sbjct: 304 VAPIEKGYEGS 314
>gi|401626633|gb|EJS44561.1| krr1p [Saccharomyces arboricola H-6]
Length = 316
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 203/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W++E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTN-DIDKWRIEEFKEEDNASGQPFAEESSFMTLFPKYREGYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ +VGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRMVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
PEE
Sbjct: 304 TAPEE 308
>gi|340960838|gb|EGS22019.1| hypothetical protein CTHT_0039040 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 322
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 207/304 (68%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F P + G LE SSF TLFP+YRE+YL++ WP+V AL+
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFLPEHSSGPFLEESSFMTLFPKYRERYLKDCWPLVTKALE 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L++VEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D M CDI
Sbjct: 64 KHGIAATLDIVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI ++VRNKERFVKRRQ L+G N +TLKALE+LT YILV
Sbjct: 124 IKIRSMVRNKERFVKRRQRLLGQNGTTLKALELLTQTYILVHGNTVSVMGGYKGLKEVRR 183
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKE 218
LM+K+EL KDPALA+E+W R+LP+FKK+ + ++ K+ K
Sbjct: 184 VVEDTMNNIHPIYLIKELMIKRELAKDPALAHEDWSRYLPQFKKRTLSKRRKPFKINDKS 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KKPYTPFPP P+ SKID +ESGEYFLS+ K+ E+ EK +K E KR+R+ F+
Sbjct: 244 KKPYTPFPPAPEKSKIDLQIESGEYFLSKEAKQRAAEAERAEKARQKKEEKKREREKEFV 303
Query: 279 PPEE 282
PPEE
Sbjct: 304 PPEE 307
>gi|159465269|ref|XP_001690845.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279531|gb|EDP05291.1| predicted protein [Chlamydomonas reinhardtii]
Length = 319
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 171/319 (53%), Positives = 202/319 (63%), Gaps = 55/319 (17%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+H + KPWD D IDHWKV+ F P N G+LE SSF+TLFP+YREKYL+E WP V AL
Sbjct: 1 QHRREKPWDHD-GIDHWKVDAFKPEDNPNGLLEESSFATLFPKYREKYLREVWPAVTKAL 59
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS-VPAPQ---------AI 125
K+ G+ CELNLVEGSMTV TTRKT DPY I+KARDLI+LL+RS VP+ +I
Sbjct: 60 KDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSEVPSADVLSACALAVSI 119
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------- 178
D+MQCDIIKI ++RNKE+FVKRRQ L+GPN STLKALE+LTGCY+LVQ
Sbjct: 120 STQQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVSAM 179
Query: 179 ---------------------------ILMVKKELEKDPALANENWDRFLPKF------- 204
LM+K+EL KDPALA ENWDRFLPKF
Sbjct: 180 GPYKGLKQLRRIVEDCIKNVHPIYHIKTLMIKRELAKDPALAEENWDRFLPKFKKKNVKR 239
Query: 205 ---KKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 261
+ K + K KK YTPFPPP PSK+D LESGEYFLSE +K + K
Sbjct: 240 KKPEAKPADEAGGKEAAKKVYTPFPPPMPPSKMDLQLESGEYFLSEEQKRERARAAKDAA 299
Query: 262 QAEKTAENKRKRDAAFIPP 280
Q KTAE KR+R+AAF+ P
Sbjct: 300 QEAKTAERKRQREAAFVAP 318
>gi|363747734|ref|XP_003644085.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887717|gb|AET37268.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
Length = 336
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/313 (51%), Positives = 209/313 (66%), Gaps = 38/313 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P+ID WK+E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDT-PDIDKWKIEEFKPEDNASGLPFAEESSFMTLFPKYREAYLKSTWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D++ C
Sbjct: 64 LDKHHLACELNLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILEDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFSSNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K P LA+++W RFLP FKK+N+ ++K K KEK
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELAKKPELADQDWSRFLPMFKKRNIARKKPKKIKEK 243
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPP P K+D +E+GEYFLS+ +K+ KK +E + +Q EK E ++R +I
Sbjct: 244 KVYTPFPPAQLPRKVDLEIETGEYFLSKNEKKMKKLEEHRNRQTEKQLEKAKERAEDYIA 303
Query: 280 PEEPSRQNSCEAE 292
P+E +N+ ++
Sbjct: 304 PDEKEYKNALNSQ 316
>gi|50422687|ref|XP_459920.1| 90S preribosome/SSU processome component KRR1 [Debaryomyces
hansenii CBS767]
gi|49655588|emb|CAG88162.1| DEHA2E14146p [Debaryomyces hansenii CBS767]
Length = 360
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 205/311 (65%), Gaps = 41/311 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V
Sbjct: 5 HNRDKPWDTE-DIDKWSIEEFKPEDNASGLHFTEESSFMTLFPKYREQYLRTIWSDVTRN 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y + C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKYFIDCQLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K+P LA+E+W RFLP F+K+NV +KK K +K
Sbjct: 184 RRVVEDCMNNVHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFRKRNVARKKSKKIGEK 243
Query: 221 P----YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
YTPFPP P K+D +ESGEYFL +++KE KK QEK++KQ E T K++R
Sbjct: 244 KEKKVYTPFPPAQLPRKVDLQIESGEYFLGKKEKERKKLQEKRDKQEEATEVKKQERLKD 303
Query: 277 FIPPEEPSRQN 287
F PEE S +N
Sbjct: 304 FEAPEENSYEN 314
>gi|50557280|ref|XP_506048.1| 90S preribosome/SSU processome component KRR1 [Yarrowia lipolytica
CLIB122]
gi|49651918|emb|CAG78861.1| YALI0F30393p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/302 (50%), Positives = 200/302 (66%), Gaps = 37/302 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD+ P+ID W ++F N G+ E SSF+TLFP+YRE YL+E W V A
Sbjct: 5 HNKDKPWDQ-PHIDKWAEDEFTEKDNASGLPFAEESSFATLFPKYREGYLKEIWDDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KIL+D + C
Sbjct: 64 LDQKGIACVLDLVEGSMTVKTTRKTYDPYAIMNARDLIKLLARSVPFPQAVKILEDGIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN NKERFVKRRQ L+GPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFTSNKERFVKRRQRLLGPNGNTLKALELLTQCYILVQGNTVSVMGPYTHMKTL 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LA E+W RFLP+FKK+NV +KK K+ + K
Sbjct: 184 RRVIEDCMMNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPQFKKRNVARKKPKTIKNK 243
Query: 221 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 280
T FPP P K+D +ESGE+FL +K + +EK+++QA ++AE + +R+ AFI P
Sbjct: 244 VRTAFPPAQLPRKVDLQIESGEFFLGADEKRRRADEEKRQQQAARSAEKQAQRELAFIAP 303
Query: 281 EE 282
+E
Sbjct: 304 DE 305
>gi|367033049|ref|XP_003665807.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
gi|347013079|gb|AEO60562.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
Length = 320
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/304 (52%), Positives = 205/304 (67%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F + G LE SSF TLFP+YRE+YL++AWP+V AL+
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFTKEQSSGPFLEESSFMTLFPKYRERYLKDAWPLVTKALE 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGIAATLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI NLVRNKERFVKRRQ ++G N +TLKALE+LT YILV
Sbjct: 124 IKIRNLVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYKGLKEVRR 183
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKE 218
LM+K+EL KDPALA+E+W R+LP FKK+ + ++ K+ K
Sbjct: 184 VVEDTMRNIHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPYKITDKS 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KKPYTPFPP P+ SK+D +E+GEYFLS+ K+ E+ EK +K E KR+R+ ++
Sbjct: 244 KKPYTPFPPAPEKSKVDMQIETGEYFLSKEAKQRAAEAERAEKAKQKKEEKKREREREYV 303
Query: 279 PPEE 282
PPEE
Sbjct: 304 PPEE 307
>gi|367053715|ref|XP_003657236.1| 90S preribosome/SSU processome component KRR1 [Thielavia terrestris
NRRL 8126]
gi|347004501|gb|AEO70900.1| hypothetical protein THITE_2122753 [Thielavia terrestris NRRL 8126]
Length = 321
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 164/310 (52%), Positives = 205/310 (66%), Gaps = 39/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F + G LE SSF TLFP+YRE+YL++AWP+V AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFTKEDSSGPFLEESSFMTLFPKYRERYLKDAWPLVTKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G+ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGIKATLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI N+VRNKERFVKRRQ ++G N +TLKALE+LT YILV
Sbjct: 124 IKIRNMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYKGLKEVRR 183
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKE 218
LM+K+EL KDPALA+E+W R+LP FKK+ + ++ KV K
Sbjct: 184 VVEDTMQNIHPIYLIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPFKVTDKS 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KKPYTPFPP P+ SK+D +ESGEYFLS+ K+ E+ EK +K E KR+R+ F+
Sbjct: 244 KKPYTPFPPAPEKSKVDMQIESGEYFLSKEAKQRAAEAERAEKAKQKKEEKKREREREFV 303
Query: 279 PPEEPSRQNS 288
PPEE + S
Sbjct: 304 PPEESTGGKS 313
>gi|187469407|gb|AAI67117.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 353
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 206/312 (66%), Gaps = 39/312 (12%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDP L +++W+RFLP+FK KNV ++
Sbjct: 191 PFSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKR 250
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + +
Sbjct: 251 KEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQ 310
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 311 EERNKAFIPPKE 322
>gi|156382113|ref|XP_001632399.1| predicted protein [Nematostella vectensis]
gi|156219454|gb|EDO40336.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/299 (53%), Positives = 208/299 (69%), Gaps = 35/299 (11%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD + IDHW+V+KF N G++E SSF+TLFP+YREKYL+E WP+V+ LKE+ + C
Sbjct: 1 WDHE-GIDHWRVDKFSADDNPYGVVEESSFATLFPKYREKYLKEVWPLVEKELKEHNLKC 59
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
+L+L+EGSMTV TTRKT DPYII+KARD+I+L++RSV QA +IL+DE+ CDIIKI +L
Sbjct: 60 QLDLIEGSMTVFTTRKTFDPYIIIKARDMIKLMARSVQFEQAKRILEDEVACDIIKIASL 119
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------ 178
VRNKERFVKRRQ L+GPN +TLKALE+LT CYI+VQ
Sbjct: 120 VRNKERFVKRRQRLIGPNCATLKALELLTECYIMVQGNTVSALGPYKGLKQVRKVVEETM 179
Query: 179 ----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPP 228
LM+K+EL KDP L NE+WDRFLPKF+KK VK+KK K KK YTPFPPP
Sbjct: 180 KNVHPIYNIKTLMIKRELAKDPDLKNESWDRFLPKFRKKAVKKKKKVPKTKKEYTPFPPP 239
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
SK+DK L SGEYFL E++++++ E++++QA + K R+ A+IPP E +N
Sbjct: 240 QPESKMDKELASGEYFLKEKERKAQAQHERKQRQAAAAEKRKVTREQAYIPPVETVPKN 298
>gi|301621305|ref|XP_002939993.1| PREDICTED: KRR1 small subunit processome component homolog [Xenopus
(Silurana) tropicalis]
gi|159155304|gb|AAI54861.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 373
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 206/312 (66%), Gaps = 39/312 (12%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDP L +++W+RFLP+FK KNV ++
Sbjct: 191 PFSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKR 250
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + +
Sbjct: 251 KEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQ 310
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 311 EERNKAFIPPKE 322
>gi|113197682|gb|AAI21623.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 371
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 206/312 (66%), Gaps = 39/312 (12%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 9 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 68
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 69 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 128
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 129 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 188
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDP L +++W+RFLP+FK KNV ++
Sbjct: 189 PFSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKR 248
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE + +
Sbjct: 249 KEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKRQ 308
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 309 EERNKAFIPPKE 320
>gi|452823541|gb|EME30551.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Galdieria
sulphuraria]
Length = 350
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/327 (49%), Positives = 218/327 (66%), Gaps = 38/327 (11%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+ K+ K KPWD + +IDHWKVE+F P + LE SSFSTLFPQYRE YL++ WP V
Sbjct: 15 RNKYRKDKPWDSE-DIDHWKVEEFTPEQSSFPFLEESSFSTLFPQYREAYLRQVWPTVTK 73
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
+L Y +SCEL+LV+G+M V TT KT DPYII KARDLI+LL+RSVP QA+KIL D+MQ
Sbjct: 74 SLDTYSISCELDLVKGAMVVRTTAKTWDPYIIFKARDLIKLLARSVPVQQALKILRDDMQ 133
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIKI N RNKERFVKRRQ L+G N +TLKA+E+LT CY+LVQ
Sbjct: 134 CDIIKISNFTRNKERFVKRRQRLIGSNGATLKAIELLTQCYVLVQGSTVAAMGSYKGLKQ 193
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK---S 216
LM+K+EL KDP L+ E+WDRFLPKFKKKN K+K+ +
Sbjct: 194 VRRIVEDCMRNIHPIYNIKTLMIKRELAKDPILSKESWDRFLPKFKKKNPKKKRKVPKNT 253
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
K+ + PFPPP P KID +ESGEYFL E++K+ ++ QE+++++ EK E +++++
Sbjct: 254 KKDESDNPFPPPQMPRKIDLEMESGEYFLHEKQKQLRQRQERKKREEEKQLEKRKQKERE 313
Query: 277 FIPPEEPSRQNSCEAEDKTNDVAAMAK 303
+IPP+E + +S + K +D ++ K
Sbjct: 314 YIPPKEDNVNDSQVYKRKQSDNDSVRK 340
>gi|126132748|ref|XP_001382899.1| 90S preribosome/SSU processome component KRR1 [Scheffersomyces
stipitis CBS 6054]
gi|126094724|gb|ABN64870.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 356
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 205/309 (66%), Gaps = 39/309 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD +ID W +E+F P N G E SSF TLFP+YRE+YL+ W V +
Sbjct: 5 HNRDKPWD-TADIDKWALEEFKPEHNASGQHFTEESSFMTLFPKYREQYLRSIWADVTKS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ + CEL+LVEG+MTV TT KT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LEKHFIKCELDLVEGAMTVKTTTKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS--KE 218
LM+K+EL K P LA E+W RFLP FKK+NV +KK KS +E
Sbjct: 184 RRVVEDCMRNVHPIYYIKELMIKQELSKKPELAEEDWSRFLPSFKKRNVARKKAKSSKRE 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP P K+D +ESGEYFL +++K KK +EK+EKQ E + K++R+ ++
Sbjct: 244 KKVYTPFPPAQTPRKVDLQVESGEYFLGKKEKAMKKLKEKREKQEEASVARKQEREKDYV 303
Query: 279 PPEEPSRQN 287
PEE +N
Sbjct: 304 APEEEKYEN 312
>gi|327272856|ref|XP_003221200.1| PREDICTED: KRR1 small subunit processome component homolog [Anolis
carolinensis]
Length = 385
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 197/289 (68%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 32 DGWKEPAFKREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINAALDLIEG 91
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTVSTT+KT DPYII++ARDLI+LL+RSVP QA++IL+D++ CDIIKIG LVRN+ERF
Sbjct: 92 SMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAVRILEDDVACDIIKIGTLVRNRERF 151
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
+KRRQ L+GPN STLKALE+LT CYILVQ
Sbjct: 152 IKRRQRLIGPNGSTLKALELLTSCYILVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 211
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KDP L +NW+RFLPKFK KN+ ++K K+ YTPFPPP S+
Sbjct: 212 NIKTLMIKRELSKDPELRAQNWERFLPKFKHKNLNKRKEPKKKNVKKEYTPFPPPQPESQ 271
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+DK L SGE+FL E +K+ K+ +E + KQA ++ + +R+ AFIPP+E
Sbjct: 272 VDKELASGEFFLKESQKKRKRVEEIKAKQAAAISKRQEERNKAFIPPKE 320
>gi|241949981|ref|XP_002417713.1| 90S preribosome/SSU processome component KRR1 [Candida dubliniensis
CD36]
gi|223641051|emb|CAX45425.1| ribosomal RNA assembly protein, putative [Candida dubliniensis
CD36]
Length = 370
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/310 (53%), Positives = 207/310 (66%), Gaps = 40/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK--- 217
LM+K+EL K+PALANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKNIHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKSI 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++R F
Sbjct: 244 EKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQERAKDF 303
Query: 278 IPPEEPSRQN 287
PEE +N
Sbjct: 304 EAPEEEVYEN 313
>gi|68484447|ref|XP_713834.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|68484528|ref|XP_713795.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435308|gb|EAK94692.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435349|gb|EAK94732.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|238878458|gb|EEQ42096.1| ribosomal RNA assembly protein mis3 [Candida albicans WO-1]
Length = 358
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/310 (53%), Positives = 207/310 (66%), Gaps = 40/310 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK--- 217
LM+K+EL K+PALANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKNIHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKSV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++R F
Sbjct: 244 EKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQERAKDF 303
Query: 278 IPPEEPSRQN 287
PEE +N
Sbjct: 304 EAPEEEVYEN 313
>gi|342320728|gb|EGU12667.1| Hypothetical Protein RTG_01217 [Rhodotorula glutinis ATCC 204091]
Length = 394
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 167/345 (48%), Positives = 210/345 (60%), Gaps = 73/345 (21%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGM----LEVSSFSTLFPQYREKYL 64
K K H K KPWD + DHWKV DP W EG M LE SSF+TLF +YRE YL
Sbjct: 35 AGKSKKQMHRKDKPWDVE-GTDHWKV---DP-WAEGEMRGPLLEESSFATLFAKYRETYL 89
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W V AL+++G+ L+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP PQA
Sbjct: 90 REIWGHVTAALEKHGIVATLDLVEGSMTVKTTRKTHDPYIILKARDMIKLLARSVPFPQA 149
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----- 179
++IL+D M CDIIKIGN++RN ERFVKRRQ ++GP STLKA+E+LT CY+LVQ
Sbjct: 150 VRILEDGMDCDIIKIGNIIRNTERFVKRRQRILGPGGSTLKAIELLTQCYVLVQGNTVAA 209
Query: 180 -----------------------------LMVKKELEKDPALANENWDRFLPKFKKKN-- 208
LM+K+EL KDP LA+ENWDRFLPKF+++
Sbjct: 210 MGGHKGLKEVRKIVIDCMKNIHPIYHIKELMIKRELAKDPKLASENWDRFLPKFRRRREK 269
Query: 209 ----------------VKQKKVKSKEKK-----------PYTPFPPPPQPSKIDKLLESG 241
V S E + PYTPFPP QPSKID LESG
Sbjct: 270 KRGPPAAEGSGVNGIPVNGDASTSAEAQPPAKKQKKEKKPYTPFPPAQQPSKIDLQLESG 329
Query: 242 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE-PSR 285
EYFL R+K+ ++ ++++ KQAE TA + +R AF+ P+E P+R
Sbjct: 330 EYFLKPREKQQREEEKRKAKQAEATAARQEERAKAFVAPDEAPAR 374
>gi|260786115|ref|XP_002588104.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
gi|229273262|gb|EEN44115.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
Length = 370
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 214/322 (66%), Gaps = 43/322 (13%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK F N GMLE SSF+TLFP+YRE+YL+E WP+VK L E+GV L+++EGSM
Sbjct: 27 WKEPGFSKEDNPHGMLEESSFATLFPKYREQYLRECWPLVKKKLAEFGVRAVLDVIEGSM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV+TTRKT DP+I+++ARDLI+LL+RSVP QA++ILDD++ CDIIKIG +VRNKERFVK
Sbjct: 87 TVATTRKTWDPFIVIRARDLIKLLARSVPYEQAVRILDDDVFCDIIKIGGMVRNKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ L+GPN TLKA+E+LT CY+LVQ
Sbjct: 147 RRQRLIGPNGQTLKAVELLTQCYVLVQGNTVAAIGTHKGLRDVRKIVVDTMKNIHPVYNI 206
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKID 235
+M+K+EL KDP L NE+WDRFLPKF+ K + ++K K +EKK YTPFPPP SK+D
Sbjct: 207 KAMMIKRELAKDPVLKNESWDRFLPKFQHKQLSKRKQPFKKREKKEYTPFPPPQPQSKVD 266
Query: 236 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ------NSC 289
+ L +GE+F+ E++K+ +K Q++Q ++ E + +R+ AFIPPEEP+ + +S
Sbjct: 267 QELATGEFFMKEKEKKQRKRQQQQVREVEAKKAQQERRNKAFIPPEEPAHKVKAHSTSSA 326
Query: 290 EAEDKTNDVAAMAKSLKEKAKK 311
E+ K DV A+ + + KK
Sbjct: 327 ESNSKV-DVEALKRKINRSGKK 347
>gi|148223443|ref|NP_001084288.1| KRR1, small subunit (SSU) processome component, homolog [Xenopus
laevis]
gi|47937628|gb|AAH72210.1| HRB2 protein [Xenopus laevis]
Length = 372
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/289 (52%), Positives = 195/289 (67%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + V EL+L+EG
Sbjct: 33 DGWKEEPFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG+LVRN+ERF
Sbjct: 93 SMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 153 IKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFGGLKEVRKVVSDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPSK 233
LM+K+EL KDP L +++W+RFLP+FK KNV ++ K KK YTPFPPP S+
Sbjct: 213 NIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKEPKKKNVKKAYTPFPPPQPESQ 272
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGE+FL E K KK +E + KQAE + + +R+ AFIPP+E
Sbjct: 273 IDKELASGEFFLKESHKRRKKLEEVKAKQAEAVTKRQEERNKAFIPPKE 321
>gi|451998791|gb|EMD91254.1| hypothetical protein COCHEDRAFT_1135572 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/303 (53%), Positives = 203/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N+ G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNKAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ D
Sbjct: 64 QRLGIGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAIKILEDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYKGLKQVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+KKEL KDP LANE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIIEDTMHNIHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK EK +++R A +
Sbjct: 244 SKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAQEEREEKMKEKMDAKRKERMAEY 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|195996143|ref|XP_002107940.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
gi|190588716|gb|EDV28738.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
Length = 348
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 206/299 (68%), Gaps = 36/299 (12%)
Query: 19 KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
KP WD + IDHWK++ FD N G+LE SSF+TLFP+YREKYL+EAWP+V+ LK++
Sbjct: 16 KPSAWDHE-GIDHWKIDTFDEKDNPQGLLEESSFATLFPKYREKYLREAWPLVEEVLKQH 74
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
+ C+L+++EGSMTVSTTRKT DPY+I+KARDLI+LL+RSVP QA +IL+D M C+IIK
Sbjct: 75 NIKCKLDVIEGSMTVSTTRKTWDPYVIIKARDLIKLLARSVPVEQAKRILEDGMACEIIK 134
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------------- 178
IG+LVRN++RF+KRRQ L+GPN +TLKALE+LTGCY+++Q
Sbjct: 135 IGSLVRNRQRFIKRRQRLIGPNGATLKALELLTGCYLMIQGNTVACLGTYKGLKQAKKVI 194
Query: 179 --------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTP 224
+M+K+EL +P +ANE+WDRFLPK KK +KK EKK YTP
Sbjct: 195 IDTMNNVHPIYNIKAMMIKRELANNPDMANESWDRFLPK-FKKVNIKKKKVKIEKKEYTP 253
Query: 225 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 283
FPPP KIDK + SGEYFL ++++ K +E+Q KQAE + K KR+ F PP EP
Sbjct: 254 FPPPQTERKIDKEMASGEYFLKKKERHFMKRKERQVKQAEAKEKRKAKREKLFTPPSEP 312
>gi|154290221|ref|XP_001545709.1| 90S preribosome/SSU processome component KRR1 [Botryotinia
fuckeliana B05.10]
gi|347840709|emb|CCD55281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 349
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/281 (53%), Positives = 192/281 (68%), Gaps = 40/281 (14%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E F P N GG E SSF+TLFP+YRE YL+ WP++ +L
Sbjct: 5 YNKEKPWDTD-DIDKWKIEAFTPADNAGGTFTEESSFATLFPKYREVYLKTVWPLIMKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 VIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 217
LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++ V K
Sbjct: 184 RIIEDCMANIHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLNKRRVPRNVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 258
KK YTPFPP + SK+D +ESGEYFL ++ KE K +E+
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLGKQAKERKVQEER 284
>gi|146415907|ref|XP_001483923.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
gi|146391048|gb|EDK39206.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
Length = 340
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/308 (50%), Positives = 204/308 (66%), Gaps = 38/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W V++F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWHVDEFKPEDNASGLPFAEESSFMTLFPKYREQYLRTIWSEVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+K+L D++ C
Sbjct: 64 LDKHNIACQLDLVEGSMTVKTTRKTYDPAIIIKARDLIKLLARSVPFPQAVKVLQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTNCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK + +KK
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKQELSKKPELANEDWSRFLPMFKKRNVARKKKAAPDKK 243
Query: 221 P-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
YTPFPP P K+D +ESGEYFL +R+K+ Q+K++KQ E + + +++ +
Sbjct: 244 KVYTPFPPAQTPRKVDLQIESGEYFLGKREKKQNDLQKKRDKQEEVSEQKNKEKLRGYEA 303
Query: 280 PEEPSRQN 287
PEE +N
Sbjct: 304 PEEQLHEN 311
>gi|294898650|ref|XP_002776320.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239883230|gb|EER08136.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 337
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 201/312 (64%), Gaps = 36/312 (11%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
K K K+ + KPWD + IDHWK E F N G+LE SSF+TLFPQYRE YL++ WP
Sbjct: 25 KTKKNKYRRDKPWDHE-GIDHWKYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPD 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------- 179
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQ
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQKK 263
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + + KR+R+
Sbjct: 264 IAKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQRKREREEM 323
Query: 277 FI-PPEEPSRQN 287
+ PP E R++
Sbjct: 324 YSQPPPEKIRKS 335
>gi|302309082|ref|NP_986293.2| 90S preribosome/SSU processome component KRR1 [Ashbya gossypii ATCC
10895]
gi|299790936|gb|AAS54117.2| AFR744Wp [Ashbya gossypii ATCC 10895]
gi|374109527|gb|AEY98433.1| FAFR744Wp [Ashbya gossypii FDAG1]
Length = 343
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/304 (53%), Positives = 210/304 (69%), Gaps = 38/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P++D W +E+F+P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWD-TPDVDKWAIEEFNPEDNASGLPFAEESSFMTLFPKYRETYLKSIWKEVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ ++CELNLVEGSM+V TTRKT DP II+KARDLI+LL+RSVP PQAIKIL D++ C
Sbjct: 64 LEKHHIACELNLVEGSMSVKTTRKTYDPAIILKARDLIKLLARSVPLPQAIKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN+V +KERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNIVASKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K P LA E+W RFLP FKK+NV ++K K KEK
Sbjct: 184 RRVVEDCMRNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPKKIKEK 243
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPP P K+D +E+GEYFLS+++KE+KK + ++ +QAEK +E +++R +I
Sbjct: 244 KVYTPFPPAQLPRKVDLEIETGEYFLSKKEKEAKKLEARRAQQAEKQSEKEKERAKDYIA 303
Query: 280 PEEP 283
P EP
Sbjct: 304 PAEP 307
>gi|389747153|gb|EIM88332.1| ribosomal RNA assembly protein mis3 [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 210/348 (60%), Gaps = 65/348 (18%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQY 59
M E+TV + K KPWD D +IDHWKV+ F N+GG E SSF+TLFP+Y
Sbjct: 1 MASEGEETVVVNSNKRFRKEKPWDTD-DIDHWKVDAFTAADNKGGTFAEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+EAW V AL +G++C L+L+ GSM+V TTRK DPY+I+KARDLI+LL+R V
Sbjct: 60 REKYLREAWSAVTRALDPHGIACTLDLIHGSMSVRTTRKAFDPYMILKARDLIKLLARGV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI 179
QA+KILDD + CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 120 AVTQAVKILDDNVACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 179
Query: 180 ----------------------------------LMVKKELEKDPALANENWDRFLPKFK 205
LM+K+EL KDP LA E+WDRFLP+F+
Sbjct: 180 STVSVMGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPKLATESWDRFLPQFR 239
Query: 206 KKNVKQKK-----------------------------VKSKEKKPYTPFPPPPQPSKIDK 236
+K++ + + KEKK YTPFPP QP K+D
Sbjct: 240 RKHLSTSEKTARKNERMETKNDARQAAGLEPDKAPSAMAKKEKKVYTPFPPAQQPRKVDL 299
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
LESGEYFL +K+ ++ +E+++KQ E T + + +R FI P E +
Sbjct: 300 QLESGEYFLKPHEKKRREEKERKQKQEETTEKRRAERAEPFIAPVETA 347
>gi|395541221|ref|XP_003772545.1| PREDICTED: KRR1 small subunit processome component homolog
[Sarcophilus harrisii]
Length = 381
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 196/289 (67%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 40 DGWKEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEG 99
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTVSTT+KT DPYII++ARDLI+LL+RSVP QAI+IL D+ CDIIKIG+LVRNKERF
Sbjct: 100 SMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILQDDTACDIIKIGSLVRNKERF 159
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 160 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 219
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L ++NW+RFLP+FK KN+ ++K K+ YTPFPPP S+
Sbjct: 220 NIKTLMIKRELSKDSELRSQNWERFLPQFKHKNLNKRKEPKKKTVKKEYTPFPPPQPESQ 279
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL E +K+ ++ ++ + KQAE ++ + +R+ AFIPP+E
Sbjct: 280 IDKELASGEYFLKESQKKQQRMEQIKAKQAEAISKRQTERNKAFIPPKE 328
>gi|392593127|gb|EIW82453.1| ribosomal RNA assembly protein mis3, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 355
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/320 (46%), Positives = 205/320 (64%), Gaps = 64/320 (20%)
Query: 29 IDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLV 87
+ WKV+ F+P N+GG+L E SSF+TLFP+YREKYL+E W V AL+ +G++C L+LV
Sbjct: 1 LSQWKVDPFEPTDNKGGVLTEESSFATLFPKYREKYLREVWSAVTRALESHGIACTLDLV 60
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
GSM+V TTRKT DPY+I+KARDL++LL+R V QA+K+L D++ CDIIKIG+LVRNKE
Sbjct: 61 HGSMSVRTTRKTFDPYVILKARDLVKLLARGVAINQAVKVLQDDVACDIIKIGSLVRNKE 120
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------------------- 179
RFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 121 RFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKSLKEVRRIVLDCMKNIHP 180
Query: 180 ------LMVKKELEKDPALANENWDRFLPKFKKKNVK---------QKKVKSKE------ 218
LM+++EL KDP LA E+WDRFLP+F+K+++K + KV +E
Sbjct: 181 IYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTARKNEAKVAKEEARKAAG 240
Query: 219 -------------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 265
KK YTPFPP P K+D LESGEYFL +KE+++ +++++KQ EK
Sbjct: 241 LDPVESSRKDGPSKKTYTPFPPAQMPRKVDLQLESGEYFLKAHEKEAREAEKRKQKQNEK 300
Query: 266 TAENKRKRDAAFIPP-EEPS 284
TA + +R F+ P EEP+
Sbjct: 301 TALRQAERAEVFVAPVEEPA 320
>gi|406604799|emb|CCH43784.1| Ribosomal RNA assembly protein KRR1 [Wickerhamomyces ciferrii]
Length = 355
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/315 (50%), Positives = 205/315 (65%), Gaps = 45/315 (14%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID WK+E+F P N G E SSF TLFP+YRE YL++ WP V A
Sbjct: 5 HNRDKPWDT-PDIDKWKLEEFKPEDNVSGQPFAEESSFMTLFPKYREVYLKQIWPDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEG+M+V TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIACTLDLVEGAMSVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF KRRQ LVGP+ +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKDRFTKRRQRLVGPSGNTLKALELLTKCYILVQGNTVSAMGPFRGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS---- 216
LM+K+EL+K P LANE+W R+LP+FKKKNV +KK K
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELQKKPELANEDWSRYLPQFKKKNVARKKPKQVRDD 243
Query: 217 ----KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
KEKK YTPFPP P K+D +ESGEYFL++++K K+ Q K+EKQ E +
Sbjct: 244 QEKKKEKKVYTPFPPAQLPRKVDLQIESGEYFLNKKEKRVKELQAKKEKQEEHKITRDEE 303
Query: 273 RDAAFIPPEEPSRQN 287
R ++ PEE +N
Sbjct: 304 RAKDYVAPEEDKYEN 318
>gi|116194448|ref|XP_001223036.1| 90S preribosome/SSU processome component KRR1 [Chaetomium globosum
CBS 148.51]
gi|88179735|gb|EAQ87203.1| hypothetical protein CHGG_03822 [Chaetomium globosum CBS 148.51]
Length = 291
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 201/275 (73%), Gaps = 10/275 (3%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLKDSWPLVTKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+L+EGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGITATLDLIEGSMTVKTTKKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-----ILMVKKELEKDPA 191
+KI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV ++ +K+EL KDP
Sbjct: 124 LKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTETYILVHGNTVSVMGIKRELAKDPE 183
Query: 192 LANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSE 247
LA+E+W R+LP FKK+ + ++ KV K KK YTPFPP P+ SK+D+ +E+GEYFL +
Sbjct: 184 LAHEDWSRYLPNFKKRTLSKRRTPFKVTDKAKKTYTPFPPAPEKSKVDQQIETGEYFLGK 243
Query: 248 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
K E+ EK +K E KR+R+ ++PPEE
Sbjct: 244 EAKHRAAEAERAEKAKQKKEEKKREREREYVPPEE 278
>gi|367012591|ref|XP_003680796.1| 90S preribosome/SSU processome component KRR1 [Torulaspora
delbrueckii]
gi|359748455|emb|CCE91585.1| hypothetical protein TDEL_0C06960 [Torulaspora delbrueckii]
Length = 350
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 209/314 (66%), Gaps = 39/314 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W+VE+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTE-DIDKWQVEEFKPEDNASGLPFAEESSFMTLFPKYREPYLKSIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+L+EGSMTV TTRKT DP II++ARDLI+LL+RSVP QA+KIL++++ C
Sbjct: 64 LNAHHIACVLDLMEGSMTVKTTRKTFDPAIILRARDLIKLLARSVPFAQAVKILEEDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNVVANKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--SKE 218
LM+K+EL K P LA E+W RFLP FKK+NV +KK K E
Sbjct: 184 RRVVEDTMRNVHPIYQIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPKKIRAE 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP QP KID +ESGEYFLS+++KE K +E++EKQAEK E + R +I
Sbjct: 244 KKVYTPFPPAQQPRKIDLEIESGEYFLSKKEKEINKLKERREKQAEKQEEKEEARSKDYI 303
Query: 279 PPEEPSRQNSCEAE 292
P+E ++S E E
Sbjct: 304 APKEDVYKSSLEPE 317
>gi|302833165|ref|XP_002948146.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
gi|300266366|gb|EFJ50553.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
Length = 442
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 181/349 (51%), Positives = 213/349 (61%), Gaps = 70/349 (20%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKH + KPWD + IDHWKVE F P N G+LE SSF+TLFP+YREKYL+E WP V
Sbjct: 21 KKKGKHRRDKPWDHE-GIDHWKVEPFKPEDNPSGLLEESSFATLFPKYREKYLREVWPAV 79
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
ALK+ G+ CELNLVEGSMTV TTRKT DP+ I+KARDLI+LL+RSVPAPQA+KIL
Sbjct: 80 TKALKDVGIGCELNLVEGSMTVRTTRKTWDPFAIIKARDLIKLLARSVPAPQALKIL--- 136
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------- 178
+E+FVKRRQ L+GPN STLKALE+LTGCY+LVQ
Sbjct: 137 --------------QEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVAAMGPYKGL 182
Query: 179 ---------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----- 212
LM+K+EL KDPALA ENWDRFLPKFKKKNVK+K
Sbjct: 183 KQIRKVVEDCIKNIHPIYHIKTLMIKRELAKDPALATENWDRFLPKFKKKNVKRKKPEEA 242
Query: 213 --KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K + KK YTPFPPP PSK+D LESGEYFLSE +K + K Q +TAE
Sbjct: 243 ANKAGEEAKKVYTPFPPPMPPSKLDLALESGEYFLSEEQKRERARAAKDAAQEARTAERL 302
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKT-----------NDVAAMAKSLKEK 308
R+R AAFI P+E + DV +A+SLK+K
Sbjct: 303 RQRQAAFIAPKENGPSTTGRGSGGVQQQQEQSKQGGEDVRVLAESLKKK 351
>gi|195437492|ref|XP_002066674.1| GK24616 [Drosophila willistoni]
gi|378548398|sp|B4N0P7.1|KRR1_DROWI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194162759|gb|EDW77660.1| GK24616 [Drosophila willistoni]
Length = 347
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/309 (50%), Positives = 204/309 (66%), Gaps = 39/309 (12%)
Query: 24 DEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+ DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ A+ E+ +
Sbjct: 13 NTDPVDNAWSLKIPAFKETDNPHGMIEESSFATLFPKYREKYLKEVWPLVEQAVGEHHLK 72
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+LVEGSM V TTRKT DPYII+KARD+I+L++RSVP QA ++L DE+ CDIIKIGN
Sbjct: 73 AELDLVEGSMVVKTTRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDEIGCDIIKIGN 132
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LV+ KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 133 LVQKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLET 192
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPF
Sbjct: 193 MNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNLSKRKQPKVKKPKKEYTPF 252
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPS 284
PP SKIDK L SGEYFL++ +K++K+ QE+Q KQAE + +R+ FIPP EEP
Sbjct: 253 PPAQPESKIDKQLASGEYFLNKEQKQAKRQQERQTKQAEAAKKQDERRNKDFIPPTEEPP 312
Query: 285 RQNSCEAED 293
+ +A D
Sbjct: 313 TGSKRKAND 321
>gi|156550594|ref|XP_001604019.1| PREDICTED: KRR1 small subunit processome component homolog [Nasonia
vitripennis]
Length = 339
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 195/286 (68%), Gaps = 36/286 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N +LE SSF+TLFP+YREKYL+E WP+V+ AL E+ V EL+L+EGSMT
Sbjct: 22 KIPEFKPEDNPNRLLEESSFATLFPKYREKYLRECWPLVQKALSEHHVKAELDLIEGSMT 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V +TRKT DPYII+KARD+I+L+SRSVP QA+++L D++ DIIKI + VRNKE+FVKR
Sbjct: 82 VKSTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGADIIKISSFVRNKEKFVKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN TLK++E+LT CY+LVQ
Sbjct: 142 RQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYKGLQQVRRIAEDTMKNIHPIYNIK 201
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL KDP L +ENW+RFLPKF KNV ++ KEKKPYTPFPPP Q SKIDK
Sbjct: 202 ALMIKRELAKDPKLKSENWERFLPKFNSKNVSKRKQPKNKKEKKPYTPFPPPQQESKIDK 261
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
L +GEYFL E +K +KK +E++ + E T + + +R AF+PPEE
Sbjct: 262 QLATGEYFLKEEQKRAKKRKEQEARHEEATKKREERRAQAFVPPEE 307
>gi|395820180|ref|XP_003783452.1| PREDICTED: KRR1 small subunit processome component homolog
[Otolemur garnettii]
Length = 380
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 212/332 (63%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K ++ KPKP D+D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KRSFRNQKPKPEDQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKAHQKKRQKMEAIKAKQAEALSKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA +
Sbjct: 315 EERNKAFIPPKEKPVVKPKEASTETKIDVATI 346
>gi|336373198|gb|EGO01536.1| hypothetical protein SERLA73DRAFT_70716 [Serpula lacrymans var.
lacrymans S7.3]
Length = 381
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 207/343 (60%), Gaps = 69/343 (20%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYRE 61
E E VNK + H K KPWD D + +E+ GG+ E SSF+TLFP+YRE
Sbjct: 2 EGEEPVVNKNKR--HRKDKPWDTDDIDQSYSLEQ------AGGVFTEESSFATLFPKYRE 53
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V
Sbjct: 54 KYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAI 113
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
QA+K+L D++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 114 SQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGST 173
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+++EL KDP LA E+WDRFLP+F+K+
Sbjct: 174 VSVMGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRKR 233
Query: 208 NVKQ--------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLESG 241
++K +K KK YTPFPPP P K+D LESG
Sbjct: 234 HLKTSEKTAKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLESG 293
Query: 242 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
EYFL ++E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 294 EYFLKPHEREAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 336
>gi|156045189|ref|XP_001589150.1| 90S preribosome/SSU processome component KRR1 [Sclerotinia
sclerotiorum 1980 UF-70]
gi|154694178|gb|EDN93916.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 349
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 188/276 (68%), Gaps = 40/276 (14%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD +ID WK+E F P N GG E SSF TLFP+YRE YL+ WP++ +L
Sbjct: 5 YNKEKPWDTG-DIDKWKIEAFTPADNVGGTFAEESSFVTLFPKYREVYLKTVWPLIMKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQ
Sbjct: 124 VIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 217
LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++ V K
Sbjct: 184 RIIEDCMANIHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLSKRRVPRNVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 253
KK YTPFPPP + SK+D +ESGEYFL ++ KE K
Sbjct: 244 AKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKERK 279
>gi|85106412|ref|XP_962180.1| 90S preribosome/SSU processome component KRR1 [Neurospora crassa
OR74A]
gi|28923778|gb|EAA32944.1| ribosomal RNA assembly protein mis3 [Neurospora crassa OR74A]
gi|336471628|gb|EGO59789.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2508]
gi|350292741|gb|EGZ73936.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2509]
Length = 320
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/304 (51%), Positives = 203/304 (66%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP++ AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLRDSWPLITKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGITAVLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV
Sbjct: 124 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 183
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSKE 218
LM+K+EL KDPALA+E+W R+LP FKK+ + +++ V K
Sbjct: 184 VVEDTMNNVHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVNDKT 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E KR+R+ ++
Sbjct: 244 KKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKQKKEEKKREREKEYV 303
Query: 279 PPEE 282
PPEE
Sbjct: 304 PPEE 307
>gi|320583574|gb|EFW97787.1| ribosomal RNA assembly protein mis3 [Ogataea parapolymorpha DL-1]
Length = 356
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 205/308 (66%), Gaps = 38/308 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD P+ID W + +F P N G LE SSF TLFP+YRE+YL++ W V A
Sbjct: 5 YNKDKPWD-TPDIDKWAIPEFKPEDNASGSPFLEESSFMTLFPKYREEYLRQIWGDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL D+ C
Sbjct: 64 LNKHHIACTLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPFPQAVKILQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
+IIKIGN+V NKERF+KRRQ L+GPN +TLKALE+LTGCY+LVQ
Sbjct: 124 EIIKIGNIVANKERFIKRRQRLIGPNGNTLKALELLTGCYMLVQGNTVAVMGPHKGLKVL 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKEK 219
LM+K+EL K P LA E+W RFLP FKK+NV ++K K +EK
Sbjct: 184 RRVIEDCMHNIHPIYHIKELMIKRELAKRPELAEEDWSRFLPNFKKRNVARKKPKKVREK 243
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
K YTPFPP P KID +ESGEYFL +++K +K+ QEK+EKQ E +++R ++
Sbjct: 244 KEYTPFPPVQTPRKIDLQIESGEYFLGKKEKRAKELQEKREKQEEMKELKEQERAKDYVA 303
Query: 280 PEEPSRQN 287
PEE R+N
Sbjct: 304 PEEDVREN 311
>gi|452979973|gb|EME79735.1| hypothetical protein MYCFIDRAFT_156958 [Pseudocercospora fijiensis
CIRAD86]
Length = 341
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/305 (52%), Positives = 201/305 (65%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK E F P N GG E SSF+TLFP+YRE+YL+ +WP + L
Sbjct: 5 YKKDKPWDTD-DIDKWKEEAFTPDQNAGGTFSEESSFATLFPKYREQYLKSSWPTITKQL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPTPQALKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYKNLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 217
LM+K+EL KDP L NENW+RFLP FKK+N+ +++ V K
Sbjct: 184 RVVEDCMANIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLAKRRKPFNVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGEYFL+ KE K + ++E EK E K+KR+ AF
Sbjct: 244 SKKVYTPFPPAQEKSKVDLQIESGEYFLNNAAKERAKKERREEAMKEKMEERKKKREEAF 303
Query: 278 IPPEE 282
P+E
Sbjct: 304 EAPQE 308
>gi|126339445|ref|XP_001371361.1| PREDICTED: KRR1 small subunit processome component homolog
[Monodelphis domestica]
Length = 383
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 195/289 (67%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 40 DGWKEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEG 99
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSVP QAI+IL+D CDIIKIG+LVRNKERF
Sbjct: 100 SMTVCTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILEDNNACDIIKIGSLVRNKERF 159
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 160 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 219
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L ++NW+RFLP+FK KN+ ++K K+ YTPFPPP S+
Sbjct: 220 NIKTLMIKRELSKDAELRSQNWERFLPQFKHKNLNKRKEPKKKTVKKEYTPFPPPQPESR 279
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL E +K+ +K ++ + KQAE ++ + +R+ AF+PP+E
Sbjct: 280 IDKELASGEYFLKESQKKQQKMEQIKAKQAEAVSKRQAERNKAFVPPKE 328
>gi|403214636|emb|CCK69136.1| hypothetical protein KNAG_0C00230 [Kazachstania naganishii CBS
8797]
Length = 349
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/304 (51%), Positives = 199/304 (65%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD D +ID W +E+F P N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTD-DIDKWHIEEFKPEDNASGQPFAEESSFMTLFPKYRETYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL ++ C
Sbjct: 64 LDSHHIACTLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQEDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN+V NKERFVKRRQ LVGP+ +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNIVTNKERFVKRRQRLVGPDGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEL 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K+
Sbjct: 184 RRVVEDCMHNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP P K+D +ESGEYFL++++K+ KK +E++E QAEK +R +
Sbjct: 244 KKVYTPFPPAQLPRKVDLEIESGEYFLNKKEKQFKKLEERKEIQAEKQRVKDEERRKDYT 303
Query: 279 PPEE 282
P+E
Sbjct: 304 APKE 307
>gi|332375012|gb|AEE62647.1| unknown [Dendroctonus ponderosae]
Length = 347
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/321 (48%), Positives = 202/321 (62%), Gaps = 37/321 (11%)
Query: 18 DKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE 77
D KP N K+ F P N GMLE SSF+TLFPQYRE+YL++ WP+V+ L
Sbjct: 8 DDDKPTGPLENAWEMKIPGFKPEHNPHGMLEESSFATLFPQYREQYLKQVWPLVQKTLLA 67
Query: 78 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 137
+ V EL+LVEGSMTV TTRKT DPYII+KARD+I+L++RSVP A ++L+D + DII
Sbjct: 68 HSVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMARSVPFEHAKRVLEDNVGSDII 127
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------- 178
KIG + RNKERFVKRRQ L+GPN TL ++E+++ CYILVQ
Sbjct: 128 KIGTITRNKERFVKRRQRLIGPNGCTLNSMELISNCYILVQGNTVAAVGPYKGLQQVRKI 187
Query: 179 ---------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKP 221
L+VKK+L K+P L NENWDRFLPK+ KN+ ++ KEKKP
Sbjct: 188 VEDTMRNIHPMYTLKALLVKKQLLKNPELRNENWDRFLPKYANKNLSKRKQPKNKKEKKP 247
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP K+DK +E+GEYFL++ ++ +KK +E+ EK AE + KR AF+PPE
Sbjct: 248 YTPFPPPQLERKVDKEIETGEYFLNKEQRRAKKKKEQDEKHAEASKRRDEKRSQAFVPPE 307
Query: 282 EPSRQNSCEAEDKTN-DVAAM 301
EP S E T D+AA+
Sbjct: 308 EPHASTSKETAASTKVDIAAI 328
>gi|156085547|ref|XP_001610183.1| Ribosomal RNA assembly protein mis3 [Babesia bovis T2Bo]
gi|154797435|gb|EDO06615.1| Ribosomal RNA assembly protein mis3, putative [Babesia bovis]
Length = 342
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/314 (49%), Positives = 202/314 (64%), Gaps = 36/314 (11%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+K+ K+ + KPWD D IDHWKVE F N+ +LE SSF TLFP+YREKY+Q W
Sbjct: 4 RKNHNKYRRDKPWD-DETIDHWKVESFTEEDNKPPLLEESSFVTLFPKYREKYIQSIWGD 62
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK AL Y + CEL+LVEGSM+V TT+KT DPYII+KARD+I+L++RSVP QA +IL+D
Sbjct: 63 VKRALGNYHIKCELDLVEGSMSVLTTKKTWDPYIIIKARDMIKLIARSVPFHQAKRILED 122
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------- 179
+ CDI+KIG ++RNK++F+KRRQ LVGP STLKALE+LT CYIL Q
Sbjct: 123 GVYCDIVKIGGMLRNKDKFIKRRQRLVGPGGSTLKALELLTQCYILTQGQTVSIIGSIKG 182
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
LM+K+ELEKD L ENWDRFLP+FKK++VK++K +
Sbjct: 183 IKIARRIVEDCMKNIHPVYHIKELMIKRELEKDEKLKGENWDRFLPQFKKRSVKRRKTQV 242
Query: 217 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
K+KK P P K D LLESGEYFL E +++ + K +Q K EN++K+ AA
Sbjct: 243 KKKKSSGLLLPEQTPRKEDLLLESGEYFLLEEERQRRNRMNKLAEQHSKGLENRKKKAAA 302
Query: 277 FIPPEEPSRQNSCE 290
+ PE+ + S E
Sbjct: 303 Y-DPEQNTTSESVE 315
>gi|449297121|gb|EMC93139.1| hypothetical protein BAUCODRAFT_36810 [Baudoinia compniacensis UAMH
10762]
Length = 331
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/305 (51%), Positives = 203/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK E F P N GG E SSF+TLFP+YRE YL+++WPM+ L
Sbjct: 5 YKKDKPWDTD-DIDKWKEEAFTPDQNAGGTFSEESSFATLFPKYREIYLKQSWPMITRVL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP+PQA+KI++D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPSPQAVKIMEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI LVRNKERFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 124 VIKIRGLVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGAYKSLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP L NENWDRFLP FKK+N+ ++ KV K
Sbjct: 184 RVIEDCMANIHPIYHIKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRKPFKVVDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP + SK+D +ESGE+FL+++ KE + ++E K E +++R+ AF
Sbjct: 244 AKKVYTPFPPEREKSKVDLQIESGEFFLNKQAKERAGRERREENMRAKMEERRKRREEAF 303
Query: 278 IPPEE 282
+ P E
Sbjct: 304 VAPGE 308
>gi|171683573|ref|XP_001906729.1| hypothetical protein [Podospora anserina S mat+]
gi|170941746|emb|CAP67400.1| unnamed protein product [Podospora anserina S mat+]
Length = 413
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/309 (50%), Positives = 204/309 (66%), Gaps = 39/309 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D ++D WKV+ F + G LE SSF TLFP+YRE+YL+++WP+V +L+
Sbjct: 98 HKKEKPWDTD-DVDKWKVDPFTKEDSSGAFLEESSFMTLFPKYRERYLKDSWPLVTKSLE 156
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+YG+ L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 157 KYGIDAVLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 216
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV
Sbjct: 217 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 276
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSKE 218
LM+K+EL KDPALA E+W R+LP FKK+ + ++ V K
Sbjct: 277 VVEDTMQNVHPIYLIKELMIKRELAKDPALAQEDWSRYLPNFKKRTLSKRHKPHVVTDKS 336
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E KR+R+ ++
Sbjct: 337 KKTYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRMAEQERAEKSKQKKEEKKREREKEYV 396
Query: 279 PPEEPSRQN 287
PPEE + ++
Sbjct: 397 PPEESASKS 405
>gi|312375637|gb|EFR22967.1| hypothetical protein AND_13898 [Anopheles darlingi]
Length = 352
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/320 (49%), Positives = 210/320 (65%), Gaps = 39/320 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSFS LFP+YREKY++E W +V+ AL + + EL+L++G+MT
Sbjct: 29 KIPEFQPSDNPNGLLEESSFSCLFPKYREKYVKECWSLVEKALSSHFIKAELDLIQGNMT 88
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DP+II+KARDLI+LLSRSVP QA+K+L+DE+ CDIIKI NLVRNK++FVKR
Sbjct: 89 VKTTRKTWDPFIILKARDLIKLLSRSVPYEQAVKVLEDEISCDIIKIKNLVRNKDKFVKR 148
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
R L+GPN TLK+LE+LT CY+LVQ
Sbjct: 149 RSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGLQCVRKVVEETMKNIHPIYNIK 208
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL KD L ENW+RFLP+F+ KN ++ K+KK YTPFPPP SK+DK
Sbjct: 209 ALMIKRELMKDENLREENWERFLPRFQSKNTSKRAKPKVVKKKKDYTPFPPPLLESKVDK 268
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED-KT 295
L SGEYFL++ +K +KK QE + K+ E KR+R+ F+ PEEPSR++S + + K
Sbjct: 269 QLASGEYFLTDEQKTAKKKQEMKAKEKRNETEQKRRREQDFVAPEEPSRKHSTKNDSGKG 328
Query: 296 NDVAAMAKSLKEKAKKLRKQ 315
N++ KSLK K K K+
Sbjct: 329 NELN--IKSLKGKIAKANKR 346
>gi|241111418|ref|XP_002399277.1| rRNA processing protein, putative [Ixodes scapularis]
gi|215492943|gb|EEC02584.1| rRNA processing protein, putative [Ixodes scapularis]
Length = 352
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/294 (52%), Positives = 199/294 (67%), Gaps = 39/294 (13%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+L S+F+TLFP+YREKYL+E WP+VK L E+GV+ EL+++EGSMTVSTT+K D
Sbjct: 36 NPHGVLCESAFATLFPKYREKYLRECWPLVKKTLSEHGVNGELDVIEGSMTVSTTKKMWD 95
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D++ CDIIKIG++VRN+ERFVKRRQ LVGPN
Sbjct: 96 PYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIIKIGSMVRNRERFVKRRQRLVGPNG 155
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLKA+E+LT CY+LVQ LM+K+EL
Sbjct: 156 TTLKAIELLTNCYVLVQGNTVAALGPYKGLQHVRKIAEETMKNIHPIYNIKALMIKRELA 215
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KDP L +ENW+RFLPKFK K + ++K K + YTPFPP SK+DK L SGEYFL
Sbjct: 216 KDPKLKDENWERFLPKFKSKTLSKRKKPKKRRTKGEYTPFPPEQPESKMDKELASGEYFL 275
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP---SRQNSCEAEDKTN 296
ER+K+ KK Q+K EK+ E + +R+ F PPEEP S++ EAE +
Sbjct: 276 KEREKKDKKMQQKNEKKVEAEVRRQERRNKPFEPPEEPKYVSKKRPAEAESAVD 329
>gi|426373503|ref|XP_004053641.1| PREDICTED: KRR1 small subunit processome component homolog [Gorilla
gorilla gorilla]
Length = 381
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPTVKPKEASTETKIDVASI 346
>gi|91081317|ref|XP_969842.1| PREDICTED: similar to dribble CG4258-PA [Tribolium castaneum]
Length = 350
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 212/322 (65%), Gaps = 44/322 (13%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSF+TLFPQYRE+YL++ WP+V+ LKE+ ++ EL++VEGSMT
Sbjct: 23 KIPEFKPEDNPHGLLEESSFATLFPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMT 82
Query: 93 ----VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
V TTRKT DPYII+KARD+I+L+SRSVP QA ++L+D++ CDIIKIG + RNKE+
Sbjct: 83 GCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVGCDIIKIGKITRNKEK 142
Query: 149 FVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------ 178
FVKRRQ L+GPN TLK++E+LT CY+LVQ
Sbjct: 143 FVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYKGLQQVRKIVEDTMKNMHPI 202
Query: 179 ----ILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEKKPYTPFPPPPQPS 232
LM+KKEL KDP L NENWDRFLP+F KN+ ++ K KEKKPYTPFPPP S
Sbjct: 203 YNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNISKRKQPKKKKEKKPYTPFPPPQTES 262
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 292
KIDK L SGEYFL++ +K KK +EK EK A + + KR+ AF+PPEEPS
Sbjct: 263 KIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKKREEKRNEAFVPPEEPSTSKQSPNV 322
Query: 293 DKTNDVAAMAKSLKEKAKKLRK 314
+ D+A SLKEK K RK
Sbjct: 323 NTKVDIA----SLKEKIMKARK 340
>gi|380809140|gb|AFE76445.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|384945036|gb|AFI36123.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKKQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|417399949|gb|JAA46955.1| Putative rrna processing protein [Desmodus rotundus]
Length = 381
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/338 (47%), Positives = 213/338 (63%), Gaps = 42/338 (12%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+ T K + + KPKP + D + D WK F N G+LE SSF+TLFP+YR
Sbjct: 9 QATAAGKREFHNQKPKPDNHDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYR 68
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
E YL+E WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV
Sbjct: 69 EAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVS 128
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-- 178
QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 129 FEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGN 188
Query: 179 --------------------------------ILMVKKELEKDPALANENWDRFLPKFKK 206
LM+K+EL KD L +++W+RFLP+FK
Sbjct: 189 TVSAIGPFRGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKH 248
Query: 207 KNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 264
KNV ++K K+ YTPFPPP S+IDK L +GEYFL +K+ +K + + KQAE
Sbjct: 249 KNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELATGEYFLKASQKKRQKMEAIKAKQAE 308
Query: 265 KTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+ + +R+ AFIPP+E EA +T DVAA+
Sbjct: 309 ALTKRQEERNKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|194853811|ref|XP_001968227.1| GG24622 [Drosophila erecta]
gi|378548393|sp|B3N899.1|KRR1_DROER RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190660094|gb|EDV57286.1| GG24622 [Drosophila erecta]
Length = 345
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 209/328 (63%), Gaps = 38/328 (11%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + E
Sbjct: 14 DPVDNAWAMKIPTFREEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAE 73
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 74 LDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 133
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------- 178
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 134 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 193
Query: 179 ---------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPP 227
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP
Sbjct: 194 NVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPP 253
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S +
Sbjct: 254 SQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESASS 313
Query: 288 SCEAEDKTNDVAAMAKSLKEKAKKLRKQ 315
S + ED + K+LK K K K+
Sbjct: 314 SLKKEDGFSSSKVDVKALKAKLIKANKK 341
>gi|19913489|gb|AAH26107.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVALDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|452836496|gb|EME38440.1| hypothetical protein DOTSEDRAFT_92479 [Dothistroma septosporum
NZE10]
Length = 349
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 204/310 (65%), Gaps = 44/310 (14%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFD----PFWNEGGML-EVSSFSTLFPQYREKYLQEAWPM 70
K++ K WD + +ID W EK+D P N GG E SSF+TLFP+YRE YL+ +WPM
Sbjct: 6 KNNDAKTWDTE-DIDKWDSEKYDAPLKPAENLGGTFSEESSFATLFPKYREAYLKASWPM 64
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 65 ITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLSRSVPAPQAIKILED 124
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------- 179
CD+IKI LVRNK+RFVKRRQ ++GPN STLKALE+LT YILVQ
Sbjct: 125 GTACDVIKIRGLVRNKDRFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYKS 184
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK--- 213
LM+K+EL KDP L NENW+RFLP FKK+N+ +++
Sbjct: 185 LKEVRRVVEDCMANIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVPR 244
Query: 214 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
V K KK YTPFPPP + SK+D +ESGEYFL+ KE +++++ EK E K+K
Sbjct: 245 VVNDKSKKVYTPFPPPQEQSKVDLQIESGEYFLNNAAKERATKEKREDAMKEKMEERKKK 304
Query: 273 RDAAFIPPEE 282
R+ AF P+E
Sbjct: 305 REEAFKAPKE 314
>gi|117676403|ref|NP_008974.5| KRR1 small subunit processome component homolog [Homo sapiens]
gi|50400303|sp|Q13601.4|KRR1_HUMAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Rev-interacting protein 1; Short=Rip-1
gi|119617715|gb|EAW97309.1| HIV-1 Rev binding protein 2 [Homo sapiens]
Length = 381
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|410220502|gb|JAA07470.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261984|gb|JAA18958.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261986|gb|JAA18959.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410305048|gb|JAA31124.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410351423|gb|JAA42315.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
Length = 381
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|408398153|gb|EKJ77287.1| hypothetical protein FPSE_02562 [Fusarium pseudograminearum CS3096]
Length = 320
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/305 (50%), Positives = 198/305 (64%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID W++E F P N G E SSF LFP+YRE L+E+WP+V AL
Sbjct: 5 HNVAKPWDTE-DIDKWRIEPFTPKDNLAGPFTEESSFQVLFPRYRESALKESWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG+MTV T+ KT DP I+KARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKLGIACTLDLVEGAMTVKTSLKTSDPSAILKARDLIKLLARSVPAPQALKILEDGIACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV + ++FVKRRQ L+G N +TLK LE+LT YILV
Sbjct: 124 IIKIRNLVGSAQKFVKRRQRLLGHNGATLKTLELLTKTYILVHGNTVSAMGPYKGLKEIR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
M+K+EL KDP LANE+WDRFLP FK K + Q+ KV K
Sbjct: 184 RVVEDCMVNIHPIYHIKEAMIKQELAKDPKLANESWDRFLPNFKSKALSQRRVPHKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E ++R+A F
Sbjct: 244 AKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKAKEREADF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>gi|301770537|ref|XP_002920686.1| PREDICTED: KRR1 small subunit processome component homolog
[Ailuropoda melanoleuca]
Length = 380
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/340 (47%), Positives = 214/340 (62%), Gaps = 42/340 (12%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQ 58
N T + K + + KPKP + D + D WK F N G+LE SSF+TLFP+
Sbjct: 7 NGPGTADGKSEFRSKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPK 66
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YRE YL+E WP+V+ AL E+ +S L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RS
Sbjct: 67 YREAYLKECWPLVQKALNEHHISATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARS 126
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
V QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 127 VSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
Query: 179 ----------------------------------ILMVKKELEKDPALANENWDRFLPKF 204
LM+K+EL KD L +++W+RFLP+F
Sbjct: 187 GNTVSVIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQF 246
Query: 205 KKKNVKQ--KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQ 262
K KNV + + K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQ
Sbjct: 247 KHKNVNKCKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQ 306
Query: 263 AEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
AE ++ + +R+ AFIPP+E EA + DVAA+
Sbjct: 307 AEALSKRQEERNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|189053929|dbj|BAG36436.1| unnamed protein product [Homo sapiens]
Length = 381
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEKSSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|332220930|ref|XP_003259610.1| PREDICTED: KRR1 small subunit processome component homolog
[Nomascus leucogenys]
Length = 381
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|297692480|ref|XP_002823579.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pongo abelii]
Length = 381
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASAETKIDVASI 346
>gi|397526018|ref|XP_003832938.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pan paniscus]
Length = 381
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|453082814|gb|EMF10861.1| eukaryotic type KH-domain (KH-domain type I) [Mycosphaerella
populorum SO2202]
Length = 342
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/303 (50%), Positives = 196/303 (64%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK E F N GG E S+FSTLFP+YRE YL+ WP + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKEEPFTADQNLGGTFSEESTFSTLFPKYRELYLKTHWPRITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP +A+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPLDEAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
+IKI +VRNKERFVKRRQ ++GPN STLKAL +LT YILVQ
Sbjct: 124 VIKIRGMVRNKERFVKRRQRILGPNGSTLKALSLLTQTYILVQGNTVSIMGGYKNLKEVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+K+EL KDP L NENW+RFLP FKK+N+ ++ KV K
Sbjct: 184 RVVEDCMQNIHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVPFKVNDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
K+ YTPFPPP + SK+D +ESGEYFL++ K+ K + +++ +K E KRKR+ AF
Sbjct: 244 AKRVYTPFPPPQEKSKVDLQIESGEYFLNKAAKDRAKKERREDVMKDKMEERKRKREEAF 303
Query: 278 IPP 280
P
Sbjct: 304 DAP 306
>gi|21707899|gb|AAH33887.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 205/312 (65%), Gaps = 41/312 (13%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPGSQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 315 EERNKAFIPPKE 326
>gi|148689797|gb|EDL21744.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_c [Mus musculus]
Length = 380
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 200/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 277 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAST 336
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 337 ETKIDVAAI 345
>gi|410965126|ref|XP_003989103.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Felis catus]
Length = 381
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 212/332 (63%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA + DVAA+
Sbjct: 315 EERNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|125985977|ref|XP_001356752.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
gi|54645077|gb|EAL33817.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 207/323 (64%), Gaps = 40/323 (12%)
Query: 24 DEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+ DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ +
Sbjct: 11 NTDPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLK 70
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGN
Sbjct: 71 AELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGN 130
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 131 LVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLET 190
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPF
Sbjct: 191 MNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKAKKPKKEYTPF 250
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--P 283
PP SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E P
Sbjct: 251 PPAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAP 310
Query: 284 SRQNSCEAEDKTNDVAAMAKSLK 306
SR+ E K + A AK +K
Sbjct: 311 SRKRQAEDSSKVDVKALKAKLVK 333
>gi|226442952|ref|NP_848725.2| KRR1 small subunit processome component homolog [Mus musculus]
gi|50400505|sp|Q8BGA5.1|KRR1_MOUSE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2 homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|26326557|dbj|BAC27022.1| unnamed protein product [Mus musculus]
gi|26334765|dbj|BAC31083.1| unnamed protein product [Mus musculus]
gi|59809046|gb|AAH89510.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Mus musculus]
gi|74219882|dbj|BAE40525.1| unnamed protein product [Mus musculus]
gi|148689796|gb|EDL21743.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_b [Mus musculus]
Length = 380
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 200/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 277 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAST 336
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 337 ETKIDVAAI 345
>gi|195148176|ref|XP_002015050.1| GL18627 [Drosophila persimilis]
gi|378548396|sp|B4G9L6.1|KRR1_DROPE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194107003|gb|EDW29046.1| GL18627 [Drosophila persimilis]
Length = 340
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 207/323 (64%), Gaps = 40/323 (12%)
Query: 24 DEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+ DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ +
Sbjct: 11 NTDPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLK 70
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGN
Sbjct: 71 AELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGN 130
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 131 LVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLET 190
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPF
Sbjct: 191 MNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKSKKPKKEYTPF 250
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--P 283
PP SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E P
Sbjct: 251 PPAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAP 310
Query: 284 SRQNSCEAEDKTNDVAAMAKSLK 306
SR+ E K + A AK +K
Sbjct: 311 SRKRQAEDSSKVDVKALKAKLVK 333
>gi|403271960|ref|XP_003927864.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Saimiri boliviensis boliviensis]
Length = 388
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 278 IDKELASGEYFLKANQKKRQKMEAIKAKQAEAVSKRQEERNKAFIPPKE 326
>gi|17137346|ref|NP_477240.1| dribble [Drosophila melanogaster]
gi|74870304|sp|Q9VPU8.1|KRR1_DROME RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|7296147|gb|AAF51440.1| dribble [Drosophila melanogaster]
gi|17862394|gb|AAL39674.1| LD24634p [Drosophila melanogaster]
gi|220944572|gb|ACL84829.1| dbe-PA [synthetic construct]
gi|220954446|gb|ACL89766.1| dbe-PA [synthetic construct]
Length = 345
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 203/310 (65%), Gaps = 36/310 (11%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLK++E+LT CY+LVQ LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELM 211
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYFL
Sbjct: 212 KDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYFL 271
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSL 305
++ +K++K+ QE+ EKQ E +R+ F+PP E S +S + ED ++ K+L
Sbjct: 272 NQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSSSKVDVKAL 331
Query: 306 KEKAKKLRKQ 315
K K K K+
Sbjct: 332 KAKLIKANKK 341
>gi|195032987|ref|XP_001988598.1| GH10489 [Drosophila grimshawi]
gi|378548394|sp|B4JDU5.1|KRR1_DROGR RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193904598|gb|EDW03465.1| GH10489 [Drosophila grimshawi]
Length = 341
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 197/298 (66%), Gaps = 40/298 (13%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 15 EPVDNAWSLKIPTFKAEDNPHGMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L DE CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------- 178
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVLETMN 194
Query: 179 ---------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---YTPFP 226
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K + K +KP YTPFP
Sbjct: 195 NVHPIYNIKALMIKRELMKDPQLANEDWSRFLPKFKNKNISKRK-QPKSRKPKGEYTPFP 253
Query: 227 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
P SKIDK L SGEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E S
Sbjct: 254 PAQPESKIDKQLASGEYFLNKEQKQAKRQQERVAKQAEAAKKQDERRNKDFMPPTEDS 311
>gi|340712796|ref|XP_003394941.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
terrestris]
Length = 340
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 197/290 (67%), Gaps = 36/290 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N +LE SSF+TLFP+YRE+YL+E WP+++ +L+E+ + EL+L+EGSM+
Sbjct: 23 KIPSFKPEDNPHRLLEESSFATLFPKYREQYLKEHWPLIQKSLEEHAIKAELDLIEGSMS 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D++ DIIKI + VRN+E+FVKR
Sbjct: 83 VKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDIIKISSFVRNREKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GP TLK++E+LT CY++VQ
Sbjct: 143 RQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYKGLIQVRRIVEDTMKNIHPIYNIK 202
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL KDP L NENW+RFLPKF KN+ ++K KEKKPYTPFPPP Q SK+DK
Sbjct: 203 ALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQPKNRKEKKPYTPFPPPQQESKVDK 262
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
++ SGEYFL E +K +K+ +E+ + E + + +R AF+PPEE S++
Sbjct: 263 MIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQERRAEAFVPPEEQSKE 312
>gi|117938813|gb|AAH05225.1| KRR1 protein [Homo sapiens]
Length = 362
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|344266385|ref|XP_003405261.1| PREDICTED: KRR1 small subunit processome component homolog
[Loxodonta africana]
Length = 381
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 202/309 (65%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFDQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE ++ + +R AFIPP+E EA +
Sbjct: 278 IDKELASGEYFLKASQKKRQKMEAIKAKQAEAVSKRQEERKKAFIPPKEKPVVKPKEASN 337
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 338 ETKIDVAAI 346
>gi|167533103|ref|XP_001748232.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773352|gb|EDQ86993.1| predicted protein [Monosiga brevicollis MX1]
Length = 1010
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 165/324 (50%), Positives = 215/324 (66%), Gaps = 40/324 (12%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD + IDHWK+E F +G M++ +SF TLFP+YRE+YL+E W + L
Sbjct: 651 RYRKDKPWDHE-GIDHWKIEPFTEEMGQGLMVDETSFCTLFPKYREQYLREHWSRITSEL 709
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
K ++CEL+L+EGSMTV TTRKT DPYII+KARDLI+LL+RSVP AIKIL D++ CD
Sbjct: 710 KRLHIACELDLIEGSMTVRTTRKTWDPYIILKARDLIKLLARSVPFEHAIKILQDDVACD 769
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------- 178
IIKI LVRNKERFVKRRQ L+GPN +TLKA+E+LT CYILVQ
Sbjct: 770 IIKINGLVRNKERFVKRRQRLIGPNGATLKAIELLTECYILVQGNTVACMGPFKGLKQAR 829
Query: 179 -----------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP 221
+M+K+EL + AL +WDRFLPKFK N+K+KK K K+K+
Sbjct: 830 RVVLDCMNNIHPVYNIKAMMIKRELMANDALKEASWDRFLPKFKTSNIKRKKPKFKKKE- 888
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPP PQPSK D +LESGEYFL ++++ Q+K+++ A+K A N+ KR +A+ P
Sbjct: 889 YTPFPPAPQPSKKDLMLESGEYFLKPEERQAALTQKKKDQAAQKAAANQAKRQSAYETPA 948
Query: 282 E---PSRQNSCEA-EDKTNDVAAM 301
E P+++N A E K DVAA
Sbjct: 949 EADRPAKRNRASAPESKHVDVAAF 972
>gi|62825895|gb|AAH94236.1| Krr1 protein [Mus musculus]
Length = 379
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 200/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 36 DVWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 96 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 215
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 216 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 275
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 276 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAST 335
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 336 ETKIDVAAI 344
>gi|383847545|ref|XP_003699413.1| PREDICTED: KRR1 small subunit processome component homolog
[Megachile rotundata]
Length = 338
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 199/303 (65%), Gaps = 36/303 (11%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K D+PK N K+ F P N +LE SSF+TLFP+YRE+YL+E WP+V+ AL
Sbjct: 6 KDDEPKVTGPVDNAWSLKIPAFKPEDNPNRLLEESSFATLFPKYREQYLKEHWPLVQKAL 65
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V EL+LVEGSMTV TTRKT DPYII+KARD+I+L+SRSVP QA+++L D++ D
Sbjct: 66 AEHAVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGSD 125
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------- 178
IIKI + VRN+E+FVKRRQ L+GPN TLK++E+LT CY+LVQ
Sbjct: 126 IIKISSFVRNREKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYKGLQQVR 185
Query: 179 -----------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEK 219
LM+K+EL KDP L NENW+RFLP+F KN+ ++ K KEK
Sbjct: 186 RIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPRFSSKNISKRKQPKKKKEK 245
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
KPYTPFPPP SKIDK++ SGEYFL E +K +K +E++ + E + + +R AFIP
Sbjct: 246 KPYTPFPPPQTESKIDKMIASGEYFLKEEQKRAKLKKEQEARHQEAEKKRQERRAQAFIP 305
Query: 280 PEE 282
PEE
Sbjct: 306 PEE 308
>gi|410918454|ref|XP_003972700.1| PREDICTED: KRR1 small subunit processome component homolog
[Takifugu rubripes]
Length = 380
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 205/322 (63%), Gaps = 39/322 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + ++L+EG
Sbjct: 36 DGWKEPSFTREDNLHGLLEESSFATLFPKYREAYLKECWPLVEKALADVHIKATMDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TTRKT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG LVRNKERF
Sbjct: 96 SMTVHTTRKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDIACDIIKIGTLVRNKERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGSFSGLKEVRKVVMDTMKNIHPIY 215
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE--KKPYTPFPPPPQPSK 233
LM+K+EL KDP L +NW+RFLPKF++KN+ +++ K+ KK YTPFPP SK
Sbjct: 216 NIKTLMIKRELAKDPELRAQNWERFLPKFRRKNLAKRREPKKKAVKKEYTPFPPSQPESK 275
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA- 291
+D+ L +GE+FL E K+ KK + + KQAE ++ K +R+ FIPP E+P + S E
Sbjct: 276 VDQELATGEFFLRESVKKRKKMEAIKVKQAEVLSKKKEERNKHFIPPKEKPLMKKSTEGP 335
Query: 292 -EDKTNDVAAMAKSLKEKAKKL 312
E K + A K + K KKL
Sbjct: 336 TESKLDIEAIKMKVKRAKTKKL 357
>gi|350408959|ref|XP_003488565.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
impatiens]
Length = 340
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 200/305 (65%), Gaps = 36/305 (11%)
Query: 18 DKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE 77
D PK N K+ F P N +LE SSF+TLFP+YRE+YL+E WP+++ +L E
Sbjct: 8 DGPKVTGPVDNAWSLKIPSFKPEDNPHRLLEESSFATLFPKYREQYLKEHWPLIQKSLDE 67
Query: 78 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 137
+ + EL+L+EGSM+V TTRKT DPYII+KARD+++L+SRSVP QA+++L D++ DII
Sbjct: 68 HAIKAELDLIEGSMSVKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDII 127
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------- 178
KI + VRN+E+FVKRRQ L+GP TLK++E+LT CY++VQ
Sbjct: 128 KISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYKGLIQVRRI 187
Query: 179 ---------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KSKEKKP 221
LM+K+EL KDP L NENW+RFLPKF KN+ ++K KEKKP
Sbjct: 188 VEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQPRNKKEKKP 247
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP Q SK+DK++ SGEYFL E +K +K+ +E+ + E + + +R AF+PPE
Sbjct: 248 YTPFPPPQQESKVDKMIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQERRAEAFVPPE 307
Query: 282 EPSRQ 286
E S++
Sbjct: 308 EQSKE 312
>gi|195118158|ref|XP_002003607.1| GI18007 [Drosophila mojavensis]
gi|378548395|sp|B4KF66.1|KRR1_DROMO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193914182|gb|EDW13049.1| GI18007 [Drosophila mojavensis]
Length = 344
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 208/322 (64%), Gaps = 43/322 (13%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N G++E SSF+TLFP+YREKYL+E WP+V+ L E+ + EL+L+EGSM
Sbjct: 24 KIPAFKPEDNPHGLVEESSFATLFPKYREKYLKEVWPLVEQCLAEHHLKAELDLIEGSMV 83
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D+ CDIIKIGNLV KE+FVKR
Sbjct: 84 VKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDTGCDIIKIGNLVHKKEKFVKR 143
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 144 RQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLDTMNNVHPIYNIK 203
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDK 236
LM+K+EL KDP LA E+W RFLPKFK KN+ ++K +K YTPFPP SKIDK
Sbjct: 204 ALMIKRELMKDPKLAGEDWSRFLPKFKNKNISKRKQPKNKKPKKEYTPFPPQQPESKIDK 263
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE----PSRQNSCEAE 292
L +GEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E PSR+ + AE
Sbjct: 264 QLATGEYFLNKEQKQAKRQQERTAKQAEAAKKQDERRNKDFVPPTEDTPGPSRKRA--AE 321
Query: 293 DKTNDVAAM-AKSLKEKAKKLR 313
D DV A+ AK +K KK R
Sbjct: 322 DNKVDVQALKAKLMKANKKKER 343
>gi|355786322|gb|EHH66505.1| HIV-1 Rev-binding protein 2 [Macaca fascicularis]
Length = 381
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKKQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|355564479|gb|EHH20979.1| HIV-1 Rev-binding protein 2 [Macaca mulatta]
Length = 381
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKKQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|291389602|ref|XP_002711307.1| PREDICTED: HIV-1 rev binding protein 2 [Oryctolagus cuniculus]
Length = 380
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 200/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L ++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRTQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 278 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEAST 337
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 338 ETKIDVAAI 346
>gi|390350177|ref|XP_786725.2| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Strongylocentrotus purpuratus]
Length = 352
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 213/334 (63%), Gaps = 42/334 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+ SSF+TLFP+YREKYL+E W +V+ L E+G+ L+L+EGSMTV TTR+T D
Sbjct: 23 NPHGLAGESSFATLFPKYREKYLKECWLLVQKTLSEHGIKANLDLIEGSMTVKTTRQTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
P+II+KARD+I+LL+RSVP QA++IL+D++ ++IKIG +VRN+ERFVKRRQ L+GPN
Sbjct: 83 PFIIIKARDMIKLLARSVPFEQAMRILEDDVSAEVIKIGRMVRNRERFVKRRQRLIGPNG 142
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
STLKA+E+LT CYI+VQ +LM+K+EL
Sbjct: 143 STLKAIELLTNCYIMVQGNTVSAVGPHKGLRDVNKIVTDTLNNVHPIYNIKVLMIKRELM 202
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSK--EKKPYTPFPPPPQPSKIDKLLESGEYFL 245
KD L +E+WDRFLPKF+ KN+K++K K +KK YTPFPP +KIDK L +GEYFL
Sbjct: 203 KDDKLKSESWDRFLPKFRTKNLKKRKRPQKIGKKKEYTPFPPQQPETKIDKELATGEYFL 262
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA--EDKTNDVAAMAK 303
E +K++K QEK+ KQAE + K KR+ FIPP+EP+ + A D DV A
Sbjct: 263 RENQKKAKVRQEKRIKQAEAEVKRKDKREKPFIPPKEPTISETKPAPKPDSKIDVNA--- 319
Query: 304 SLKEKAKKLRKQKFAENINPEEYIAASGEKPSKK 337
K K K+ + +KF +++ K KK
Sbjct: 320 -FKAKIKQSQSKKFRQSVTKSTLTTPGSTKKKKK 352
>gi|427780601|gb|JAA55752.1| Putative rrna processing protein [Rhipicephalus pulchellus]
Length = 318
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 195/278 (70%), Gaps = 36/278 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++ S+F+TLFP+YREKYL+E WP+VK L E+GV+ EL+++EGSMTV+TTRK D
Sbjct: 23 NPHGVMCESAFATLFPKYREKYLRECWPLVKKTLSEHGVNAELDVIEGSMTVTTTRKMWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D + CDI+KIG LVRN+ERF+KRRQ L+GPN
Sbjct: 83 PYIILKARDMIKLLSRSVPYEQAIRVLEDGVGCDIVKIGRLVRNRERFIKRRQRLLGPNG 142
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLKA+E+LT CY+LVQ LM+K+EL
Sbjct: 143 TTLKAIELLTNCYVLVQGNTVAALGPYKGLQHVRKIVEDTMKNIHPVYNIKALMIKRELA 202
Query: 188 KDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
KDP L NENWDRFLP FK + + ++K K + K YTPFPPP SK+DK L SGEYFL
Sbjct: 203 KDPKLRNENWDRFLPHFKAQTLSKRKKPKKQRVKGEYTPFPPPQPESKMDKELASGEYFL 262
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 283
ER++++KK EK++ +AE A+ + +R+ +F PPEEP
Sbjct: 263 KERERKAKKKHEKEQSKAEAEAKRQERRNKSFQPPEEP 300
>gi|388452386|ref|NP_001252643.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|387273299|gb|AFJ70144.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKKQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|311255954|ref|XP_003126436.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Sus scrofa]
Length = 375
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/328 (48%), Positives = 210/328 (64%), Gaps = 42/328 (12%)
Query: 16 KHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E WP+
Sbjct: 13 RRQKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPL 72
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D
Sbjct: 73 VQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQD 132
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------ 178
++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 133 DVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSG 192
Query: 179 ----------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKV 214
LM+K+EL KD L +++W+RFLP+FK KNV +++
Sbjct: 193 LKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPK 252
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+
Sbjct: 253 KKTTKKEYTPFPPPQPESQIDKELASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEERN 312
Query: 275 AAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
AFIPP+E EA +T DVA +
Sbjct: 313 KAFIPPKEKPVVKPKEASTETKIDVATI 340
>gi|16877011|gb|AAH16778.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
gi|123993753|gb|ABM84478.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993755|gb|ABM84479.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993757|gb|ABM84480.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|124000011|gb|ABM87514.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
Length = 381
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YR YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYRGAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|380809138|gb|AFE76444.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 349
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 205/312 (65%), Gaps = 41/312 (13%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKKQ 314
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 315 EERNKAFIPPKE 326
>gi|402886888|ref|XP_003906847.1| PREDICTED: KRR1 small subunit processome component homolog [Papio
anubis]
Length = 381
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVRTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKQQKMEAIKAKQAEAISKKQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEAATETKIDVASI 346
>gi|448082190|ref|XP_004195077.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359376499|emb|CCE87081.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/313 (48%), Positives = 206/313 (65%), Gaps = 39/313 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
+++ KPWD D +ID W ++F N G+ E S+F TLFP+YRE+YL++ W V
Sbjct: 5 YNRDKPWDTD-DIDKWHTDEFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDVTRE 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LSKHHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQ
Sbjct: 124 DVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKGLKVV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL +P LA+E+W RFLP+FKK+NV +KK+K +K+
Sbjct: 184 RRVVEDCMNNIHPIYHIKELMLKQELASNPDLAHEDWSRFLPQFKKRNVARKKLKQSKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPPP QP K+D +ESGEYFL ++++ +K +EK+E Q E + K+ R F
Sbjct: 244 KKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALEEKREHQKEASETRKQDRMKDFE 303
Query: 279 PPEEPSRQNSCEA 291
PEE + +N A
Sbjct: 304 APEEETYKNELVA 316
>gi|307214181|gb|EFN89298.1| KRR1 small subunit processome component-like protein [Harpegnathos
saltator]
Length = 342
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/291 (51%), Positives = 199/291 (68%), Gaps = 36/291 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F N +LE SSF+TLFP+YRE+YL+E W +++ AL+E+ ++ EL+LVEGSMT
Sbjct: 22 KIPQFKKEDNPHRLLEESSFATLFPKYREQYLKEHWSLIQKALEEHAITAELDLVEGSMT 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+I+LLSRSVP QA+K+L DE+ DIIKI +L+R+KE+FVKR
Sbjct: 82 VKTTRKTWDPYIIIKARDMIKLLSRSVPYEQAMKVLQDEISADIIKISSLIRDKEKFVKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN STLKA+E+LT CY+LVQ
Sbjct: 142 RQRLIGPNGSTLKAIELLTNCYVLVQGQTVAALGPYKGLQQVRRIAEDTMKNIHPIYNIK 201
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL KDP L NENWDRFLPKF KN+ +++ K KEKKPYT FPP PQ SK+DK
Sbjct: 202 ALMIKRELAKDPKLTNENWDRFLPKFNNKNINKRKQPRKKKEKKPYTTFPPLPQESKLDK 261
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
+ +GEYFL+E +K +K+ +E+ + E T + +R AF+PPEE +N
Sbjct: 262 QIATGEYFLNEEQKRAKRKKEQDARHEEATKRRQERRAQAFVPPEEKPVEN 312
>gi|410046996|ref|XP_003952293.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Pan troglodytes]
Length = 381
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 213/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYF +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFXKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|300175390|emb|CBK20701.2| unnamed protein product [Blastocystis hominis]
Length = 327
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 210/314 (66%), Gaps = 41/314 (13%)
Query: 9 VNKKHKGK---HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
N+K +GK + K KPWD D ++ W++E++ + +LE SSF+T+FP+YRE+YL+
Sbjct: 13 TNEKKQGKKRNYRKDKPWD-DGTVNKWEIEEWKEEYMPSSLLEESSFATMFPRYREQYLR 71
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAI
Sbjct: 72 EVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAI 131
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------- 178
KILDD MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQ
Sbjct: 132 KILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVM 191
Query: 179 ---------------------------ILMVKKELEKDPALANENWDRFLPKFKKKN-VK 210
LM+K+EL KDPAL NENWDRFLPKFKK+N
Sbjct: 192 GSYQGLKTVRRIIIDCMKNIHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSS 251
Query: 211 QKKVKSKEKKPYTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
+ K ++K YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K
Sbjct: 252 KTKKVVVKEKKYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKAGI 311
Query: 269 NKRKRDAAFIPPEE 282
+++R F+PP+E
Sbjct: 312 KEQERQKKFVPPKE 325
>gi|348580525|ref|XP_003476029.1| PREDICTED: KRR1 small subunit processome component homolog [Cavia
porcellus]
Length = 381
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/341 (46%), Positives = 214/341 (62%), Gaps = 42/341 (12%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFP 57
EN +K + + KPKP + D + D WK F N G+LE SSF+TLFP
Sbjct: 6 ENGRSPAPEKSEFRSRKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFP 65
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+E WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+R
Sbjct: 66 KYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLAR 125
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
SV QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+V
Sbjct: 126 SVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMV 185
Query: 178 Q----------------------------------ILMVKKELEKDPALANENWDRFLPK 203
Q LM+K+EL KD L +++W+RFLP+
Sbjct: 186 QGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQ 245
Query: 204 FKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 261
FK KNV ++K K+ YTPFPPP S+IDK L SGEYF+ +K+ +K + + K
Sbjct: 246 FKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFMKANQKKRQKMEAIKAK 305
Query: 262 QAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
QAE ++ + +R+ AFIPP+E EA +T DVA +
Sbjct: 306 QAEALSKRQEERNKAFIPPKEKPAAKPKEAPTETKIDVATI 346
>gi|328856064|gb|EGG05187.1| hypothetical protein MELLADRAFT_48934 [Melampsora larici-populina
98AG31]
Length = 428
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 167/373 (44%), Positives = 209/373 (56%), Gaps = 103/373 (27%)
Query: 4 NMEKTVNKKHKGK---HDKPKPWDEDPNIDHWKVE-------KFDPFWNEGGMLEVSSFS 53
N+ + +N + K K H K KPWD D +IDHWK+E KF PF E SSF+
Sbjct: 14 NINEEINLERKSKKQQHRKDKPWDTD-DIDHWKIEPFEMDPIKFKPFTEE------SSFA 66
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE YL+E W + L+ +GV+C L+LVEGSMTV TTRKT DP+II+KARDLI+
Sbjct: 67 TLFPKYREVYLREIWSHLTKVLETHGVACVLDLVEGSMTVKTTRKTCDPFIILKARDLIK 126
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+RSVP QA+KIL+D + CD++KIGN++RNKERFVKRRQ ++GP+ STLKA+E+LTGC
Sbjct: 127 LLARSVPITQAVKILEDGVACDVVKIGNIIRNKERFVKRRQRILGPSGSTLKAIELLTGC 186
Query: 174 YILVQI----------------------------------LMVKKELEKDPALANENWDR 199
YILVQ LM+K+EL KDP L NENWDR
Sbjct: 187 YILVQGTTVSVMGPYRGLKTVRRIVIDCMKNIHPVYHIKELMIKRELAKDPKLVNENWDR 246
Query: 200 FLPKF-KKKNVKQKKVKSKE---------------------------------------- 218
FLP F ++K KQK +
Sbjct: 247 FLPNFSQRKKAKQKTTAEHQAIEESSHSNSNPNPQASSSKSTVLQTSQSDAFNESIAQQK 306
Query: 219 -------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 271
KK YTPFPPP PSKID+ LESGEYFL R+K K E + K+ ++ N R
Sbjct: 307 QKPKKIEKKKYTPFPPPQLPSKIDQQLESGEYFLKSREK--KTILETKRKEGQEAISNLR 364
Query: 272 K--RDAAFIPPEE 282
K + F PP E
Sbjct: 365 KLNKQTVFNPPME 377
>gi|83715980|ref|NP_001032908.1| KRR1 small subunit processome component homolog [Bos taurus]
gi|78174356|gb|AAI07551.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Bos taurus]
Length = 382
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSVLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 278 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|358055242|dbj|GAA98750.1| hypothetical protein E5Q_05438 [Mixia osmundae IAM 14324]
Length = 355
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/332 (49%), Positives = 200/332 (60%), Gaps = 66/332 (19%)
Query: 16 KHDKPKPWDEDPNIDH--WKVEKFDPFWNEGG---MLEVSSFSTLFPQYREKYLQEAWPM 70
KH K KPWD + +IDH W V KF+ + LE SSFSTLFP+YRE YL+E W
Sbjct: 25 KHRKDKPWDTE-DIDHLQWAVAKFEAPASTSDHKPFLEESSFSTLFPKYREVYLREVWAG 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V L ++G+ C L+LVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP PQAIKILDD
Sbjct: 84 VTSQLDKHGIGCTLDLVEGSMTVRTTRKTFDPYIILKARDLIKLLARSVPFPQAIKILDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------- 179
+ CDIIKIGN+VRNKERFVKRRQ ++GP STLKALE+LT CYILVQ
Sbjct: 144 SVACDIIKIGNIVRNKERFVKRRQRILGPGGSTLKALELLTNCYILVQGNTVAAMGPYKG 203
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKVK 215
+M+K+EL KDP LA E+W RFLP+F K+K K+ +V+
Sbjct: 204 LKEVRRVVLDCLANVHPIYHIKEMMIKRELAKDPKLAEEDWSRFLPQFTKRKQKKRAEVR 263
Query: 216 -------SKEKKP------------------YTPFPPPPQPSKIDKLLESGEYFLSERKK 250
E+ P YTPFPP QP KID LESGEYFL +++
Sbjct: 264 PNGEGGNGYEEHPLESAAGKAPKKPKIIKKPYTPFPPAQQPRKIDLQLESGEYFLKPKEQ 323
Query: 251 ESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+ K E +++ A+ K KR AF+ P E
Sbjct: 324 KQKSKDELSKREEAARAQRKAKRAEAFVAPPE 355
>gi|384500400|gb|EIE90891.1| ribosomal RNA assembly protein mis3 [Rhizopus delemar RA 99-880]
Length = 290
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/290 (54%), Positives = 201/290 (69%), Gaps = 37/290 (12%)
Query: 1 MGENMEKTVNKKHKGK-HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQY 59
M E + V ++ K K KPWD D +IDHWKVE+F P + E E SSF+TLFP+Y
Sbjct: 1 MSETGQPEVQQQRNNKRFRKDKPWDTD-DIDHWKVEEFKPEYMEKPFTEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
RE YL+E WP+V AL+++G++C L+LVEGSMTV TTRK+ DPY I+KARDLI+LL+RSV
Sbjct: 60 REAYLKECWPLVTKALEKWGIACVLDLVEGSMTVKTTRKSWDPYSILKARDLIKLLARSV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI 179
P PQAIKI+DD + CDIIKIGN+ RNKERFVKRRQ L+GPN STLKA+E+LT CY+++Q
Sbjct: 120 PFPQAIKIMDDGVACDIIKIGNITRNKERFVKRRQRLIGPNGSTLKAIELLTKCYMMIQG 179
Query: 180 ----------------------------------LMVKKELEKDPALANENWDRFLPKFK 205
LM+K+EL KDP LA E+WDRFLPKFK
Sbjct: 180 NTVSAMGPYKGLKDLRRIVLDCMKNIHPIYHIKELMIKRELAKDPKLATESWDRFLPKFK 239
Query: 206 KKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 254
KKN+K KK ++ K YTPFPP P SK+D LESGEYF++++KK+ +K
Sbjct: 240 KKNIKSKKKVIEKPKKEYTPFPPAPVKSKVDLQLESGEYFMNKQKKKQEK 289
>gi|374095412|sp|Q3B7L9.2|KRR1_BOVIN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|296488009|tpg|DAA30122.1| TPA: KRR1 small subunit processome component homolog [Bos taurus]
gi|440893371|gb|ELR46169.1| KRR1 small subunit processome component-like protein [Bos grunniens
mutus]
Length = 382
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 278 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|198418943|ref|XP_002125952.1| PREDICTED: similar to KRR1 protein [Ciona intestinalis]
Length = 333
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 169/319 (52%), Positives = 213/319 (66%), Gaps = 37/319 (11%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK +F P N+ GML+ SSF+TLFP+YREKYLQE W +VK L EY + L+L+EGSM
Sbjct: 14 WKEPEFKPEDNKHGMLDESSFATLFPKYREKYLQECWTIVKNKLSEYKIEGILDLIEGSM 73
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV T+R+T DPY I+ ARDLI++L+RSVP QA++I +D CDIIKIG++VRN+ERFVK
Sbjct: 74 TVKTSRRTWDPYAILNARDLIKMLARSVPIEQAVRIFEDNTFCDIIKIGSMVRNRERFVK 133
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ LVGPN +TLKALE+LTGCYILVQ
Sbjct: 134 RRQRLVGPNGATLKALELLTGCYILVQGNTTTVLGSHAGLKEARKVILDTMKNIHPVYNI 193
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKL 237
LM+K+EL KDP L NE+WDRFLPKFK+KNVKQK+ KEKKPYTPFPPP SK+DK
Sbjct: 194 KSLMIKRELSKDPNLKNESWDRFLPKFKRKNVKQKRKPRKEKKPYTPFPPPQPESKVDKE 253
Query: 238 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTND 297
+ SGEYFL E +++ KK +E++EKQ T+E K+KR + IPP+E + E T D
Sbjct: 254 IASGEYFLKEAERKRKKDEERKEKQGVATSERKQKRARSLIPPQEKKVE---EKTSVTKD 310
Query: 298 VAAMAKSLKEKAKKLRKQK 316
V +K K KL+ +K
Sbjct: 311 VDVEILKMKVKQSKLKTRK 329
>gi|149742864|ref|XP_001488486.1| PREDICTED: KRR1 small subunit processome component homolog [Equus
caballus]
Length = 380
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 209/332 (62%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + + KP D D + D WK F N G+LE SSF+TLFP+YRE YL++
Sbjct: 15 KSESRRQNAKPEDRDESELLTVPDGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKD 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAVKAKQAEALSKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R AFIPP+E EA +T DVAA+
Sbjct: 315 EERKKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|336258379|ref|XP_003344005.1| 90S preribosome/SSU processome component KRR1 [Sordaria macrospora
k-hell]
gi|380087230|emb|CCC14406.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 323
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/304 (51%), Positives = 202/304 (66%), Gaps = 39/304 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H+K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP++ AL
Sbjct: 5 HNKDKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLRDSWPLITKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KQGITAVLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------------- 179
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV
Sbjct: 124 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 183
Query: 180 -----------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSKE 218
LM+K+EL KDPALA+E+W R+LP FKK+ + +++ V K
Sbjct: 184 VVEDTMNNVHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVSDKA 243
Query: 219 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK K E KR+R+ ++
Sbjct: 244 KKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKAKKEEKKREREKEYV 303
Query: 279 PPEE 282
PPEE
Sbjct: 304 PPEE 307
>gi|66359348|ref|XP_626852.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
gi|46228137|gb|EAK89036.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
Length = 358
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 206/321 (64%), Gaps = 42/321 (13%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 6 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 64
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 65 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 124
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 125 FHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 182
Query: 176 LVQI----------------------------------LMVKKELEKDPALANENWDRFL 201
LVQ LM+K+ELEKD L ENWDRFL
Sbjct: 183 LVQGQTVSVIGSYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFL 242
Query: 202 PKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 261
PKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+ +
Sbjct: 243 PKFKNKCVKRKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERISE 302
Query: 262 QAEKTAENKRKRDAAFIPPEE 282
Q EK E +R+ +IPP E
Sbjct: 303 QKEKKNEKHMEREKMYIPPNE 323
>gi|73977410|ref|XP_851876.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Canis lupus familiaris]
Length = 380
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 153/306 (50%), Positives = 200/306 (65%), Gaps = 39/306 (12%)
Query: 16 KHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVK 72
K KP+ DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+
Sbjct: 21 KQPKPEKRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQ 80
Query: 73 GALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++
Sbjct: 81 KALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDV 140
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 141 ACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFSGLK 200
Query: 179 --------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 218
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+
Sbjct: 201 EVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKK 260
Query: 219 KKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 276
YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ A
Sbjct: 261 TVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKA 320
Query: 277 FIPPEE 282
FIPP+E
Sbjct: 321 FIPPKE 326
>gi|154273703|ref|XP_001537703.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
capsulatus NAm1]
gi|150415311|gb|EDN10664.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus NAm1]
Length = 334
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 155/288 (53%), Positives = 197/288 (68%), Gaps = 39/288 (13%)
Query: 34 VEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL+++G++C L+LVEGSMT
Sbjct: 3 IEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITKALEKHGIACTLDLVEGSMT 62
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CDIIKI NLVRNKERFVKR
Sbjct: 63 VKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACDIIKIRNLVRNKERFVKR 122
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQI--------------------------------- 179
RQ ++GP+ STLKALE+LT YILVQ
Sbjct: 123 RQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIRRVVEDCMNNIHPIYHIK 182
Query: 180 -LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSKI 234
+M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K KK YTPFPPP + SK+
Sbjct: 183 EMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVYTPFPPPQEKSKV 242
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
D +ESGEYFLS++ +E K +E E+Q EK E K++ + F+PP+E
Sbjct: 243 DLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKDFVPPKE 290
>gi|426224177|ref|XP_004006250.1| PREDICTED: KRR1 small subunit processome component homolog [Ovis
aries]
Length = 382
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+DK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 278 VDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|118789667|ref|XP_317574.3| AGAP007912-PA [Anopheles gambiae str. PEST]
gi|116123327|gb|EAA12217.4| AGAP007912-PA [Anopheles gambiae str. PEST]
Length = 348
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/338 (46%), Positives = 207/338 (61%), Gaps = 49/338 (14%)
Query: 24 DEDPNIDHW----------KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
D+ I+H+ K+ +F P N G+LE SSFS LFP+YREKY++E WP+V
Sbjct: 10 DQTAGIEHFDGPVENAWLLKIPEFKPEDNPNGLLEESSFSCLFPKYREKYIKECWPLVVK 69
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL + + +L+L+ G+MTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+L+DE+
Sbjct: 70 ALSTHHIKADLDLILGNMTVRTTRKTWDPYIILKARDLIKLLSRSVPFEQAVKVLEDEIG 129
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIK+ NLV NKE+FVKRR L+GPN TLK+LE+LT CY+LVQ
Sbjct: 130 CDIIKVKNLVANKEKFVKRRSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGLQC 189
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 219
LM+K+EL KD L ENW+RFLP+F+ KN ++ K
Sbjct: 190 VRKVVEETMKNIHPIYNIKALMIKRELMKDENLREENWERFLPRFQSKNTTKRNKPKVVK 249
Query: 220 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
K YTPFPPP Q SKIDK L SGEYFL++ +K SKK QE+ +K+ K +R+ F
Sbjct: 250 KKKEYTPFPPPLQDSKIDKQLASGEYFLTDEQKRSKKRQEQVDKEKRDATVQKERRERDF 309
Query: 278 IPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 315
+ PEE +R+ A+ + D KSLK K K K+
Sbjct: 310 VAPEETNRRT---AKANSADTPLDVKSLKGKIAKANKR 344
>gi|344240571|gb|EGV96674.1| KRR1 small subunit processome component-like [Cricetulus griseus]
Length = 711
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/295 (50%), Positives = 195/295 (66%), Gaps = 37/295 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSIKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQN 287
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP E+P+ Q+
Sbjct: 278 IDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAEQD 332
>gi|326911590|ref|XP_003202141.1| PREDICTED: KRR1 small subunit processome component homolog
[Meleagris gallopavo]
Length = 375
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 195/289 (67%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 33 DGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG+LVRN+E F
Sbjct: 93 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRNRESF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRR L+GP STLKALE+LT CYI+VQ
Sbjct: 153 VKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KDP L +NW+RFLPKFK+KN+K++K K+ YTPFPPP S+
Sbjct: 213 NIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKKRKEPKKKNIKKEYTPFPPPQPESQ 272
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL E +K+ K+ +E + KQA+ + + +R+ AFIPP+E
Sbjct: 273 IDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKRQEERNKAFIPPKE 321
>gi|157823697|ref|NP_001101564.1| KRR1 small subunit processome component homolog [Rattus norvegicus]
gi|118763785|gb|AAI28769.1| Hrb2 protein [Rattus norvegicus]
gi|149066984|gb|EDM16717.1| rCG48818, isoform CRA_a [Rattus norvegicus]
Length = 380
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+DK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 277 VDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 325
>gi|354480544|ref|XP_003502466.1| PREDICTED: KRR1 small subunit processome component homolog
[Cricetulus griseus]
Length = 381
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSIKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 278 IDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 326
>gi|26328295|dbj|BAC27888.1| unnamed protein product [Mus musculus]
Length = 380
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 153/309 (49%), Positives = 199/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFL +FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLQQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 277 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAST 336
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 337 ETKIDVAAI 345
>gi|78395091|gb|AAI07827.1| LOC553525 protein, partial [Danio rerio]
Length = 347
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SK
Sbjct: 213 NIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESK 272
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 273 IDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|109150093|gb|AAI17594.1| Zgc:136398 [Danio rerio]
Length = 376
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SK
Sbjct: 213 NIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESK 272
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 273 IDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|323456010|gb|EGB11877.1| hypothetical protein AURANDRAFT_12957, partial [Aureococcus
anophagefferens]
Length = 272
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/270 (55%), Positives = 192/270 (71%), Gaps = 36/270 (13%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD D ++DHWK+E++ P + G LE SSF+TLFP+YRE Y++EAWP+V L
Sbjct: 2 RYRKDKPWDTD-DVDHWKLEEWKPEHSPGAFLEESSFATLFPRYREGYIREAWPIVTRTL 60
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ GV+CELNL+EGSMTV+TTRKT DPY+I+KARDLI+LL+RS+PA QA+KILDD + CD
Sbjct: 61 GKVGVACELNLIEGSMTVATTRKTSDPYVILKARDLIKLLARSIPAAQAMKILDDGVHCD 120
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------- 178
+IKIG LVRN++RFV+RRQ LVGP+ +TLKALE+LT CY+LVQ
Sbjct: 121 VIKIGGLVRNRDRFVRRRQRLVGPDGATLKALELLTECYVLVQGNTVACMGGIKGLKTCR 180
Query: 179 -----------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKK 220
ILM+K+EL DP L E+W+RFLPKF KKNV+ KK +K++ K
Sbjct: 181 KVVEECFRNVHPIYNIKILMIKRELANDPELKEEDWERFLPKFAKKNVQTKKPLKTRPTK 240
Query: 221 PYTPFPPPPQPSKIDKLLESGEYFLSERKK 250
YTPFPP QPSK+D +ESGEYF E K
Sbjct: 241 AYTPFPPAQQPSKVDLQIESGEYFAPESAK 270
>gi|325974458|ref|NP_001038790.2| KRR1 small subunit processome component homolog [Danio rerio]
Length = 376
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SK
Sbjct: 213 NIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESK 272
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 273 IDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|431892069|gb|ELK02516.1| KRR1 small subunit processome component like protein [Pteropus
alecto]
Length = 380
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 202/312 (64%), Gaps = 41/312 (13%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP D D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSELRNQKPKPDDRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+ DK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQTDKELASGEYFLKASQKKRQKMEAIKAKQAEVLSKRQ 314
Query: 271 RKRDAAFIPPEE 282
+R AFIPP+E
Sbjct: 315 EERKKAFIPPKE 326
>gi|169607927|ref|XP_001797383.1| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
gi|160701520|gb|EAT85679.2| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
Length = 509
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 160/303 (52%), Positives = 200/303 (66%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++GV CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 AKHGVGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT Y+LVQ
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFKGLKTVR 183
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIIEDTMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +R+R A +
Sbjct: 244 AKKVYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAREEREDKMKDKMDAKRRERMAEY 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|300121233|emb|CBK21614.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 154/315 (48%), Positives = 209/315 (66%), Gaps = 42/315 (13%)
Query: 9 VNKKHKGK---HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
++K +GK + K KPWD D ++ W++E++ + +LE SSF+T+FP+YRE+YL+
Sbjct: 13 TDEKKQGKKRNYRKDKPWD-DGTVNKWEIEEWKEEYMPSSLLEESSFATMFPRYREQYLR 71
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAI
Sbjct: 72 EVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAI 131
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------- 178
KILDD MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQ
Sbjct: 132 KILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVM 191
Query: 179 ---------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 211
LM+K+EL KDPAL NENWDRFLPKFKK+N
Sbjct: 192 GSYQGLKTVRRIIIDCMKNIHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKSS 251
Query: 212 KKVKSKEKKP--YTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 267
K K K+ YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K
Sbjct: 252 KTKKVVVKEKNRYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKAG 311
Query: 268 ENKRKRDAAFIPPEE 282
+++R F+PP+E
Sbjct: 312 IKEQERQKKFVPPKE 326
>gi|270005203|gb|EFA01651.1| hypothetical protein TcasGA2_TC007222 [Tribolium castaneum]
Length = 537
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 172/359 (47%), Positives = 220/359 (61%), Gaps = 63/359 (17%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSF+TLFPQYRE+YL++ WP+V+ LKE+ ++ EL++VEGSMT
Sbjct: 23 KIPEFKPEDNPHGLLEESSFATLFPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMT 82
Query: 93 -------------------VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
V TTRKT DPYII+KARD+I+L+SRSVP QA ++L+D++
Sbjct: 83 TLKEHHINAELDVVEGCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVG 142
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
CDIIKIG + RNKE+FVKRRQ L+GPN TLK++E+LT CY+LVQ
Sbjct: 143 CDIIKIGKITRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYKGLQQ 202
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSK 217
LM+KKEL KDP L NENWDRFLP+F KN+ ++ K K
Sbjct: 203 VRKIVEDTMKNMHPIYNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNISKRKQPKKKK 262
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKKPYTPFPPP SKIDK L SGEYFL++ +K KK +EK EK A + + KR+ AF
Sbjct: 263 EKKPYTPFPPPQTESKIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKKREEKRNEAF 322
Query: 278 IPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 336
+PPEEPS + D+A SLKEK K RK + +E IA G P +
Sbjct: 323 VPPEEPSTSKQSPNVNTKVDIA----SLKEKIMKARK----DEDESQERIAVKGGFPVR 373
>gi|432959058|ref|XP_004086167.1| PREDICTED: KRR1 small subunit processome component homolog [Oryzias
latipes]
Length = 381
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 204/322 (63%), Gaps = 39/322 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + L+L+EG
Sbjct: 36 DGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGDSHIKASLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG +VRN+ERF
Sbjct: 96 SMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGTMVRNRERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYNGLKEVRKVVMDTMKNIHPIY 215
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL +DP L +NW+RF+PKF+ KN+ ++K K+ YTPFPP SK
Sbjct: 216 NIKTLMIKQELSRDPELRTQNWERFMPKFRHKNLSKRKEPKKKSVKKEYTPFPPSQPESK 275
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA- 291
IDK L +GE+FL E K+ KK +E + KQAE + + +R+ AFIPP E+P + S +A
Sbjct: 276 IDKELATGEFFLRESVKKRKKMEEIKVKQAEVLTKRQEERNKAFIPPKEKPLMKKSAKAS 335
Query: 292 -EDKTNDVAAMAKSLKEKAKKL 312
E K + A K K K K+L
Sbjct: 336 TEAKLDIEAIKDKVRKAKTKRL 357
>gi|224094097|ref|XP_002193046.1| PREDICTED: KRR1 small subunit processome component homolog
[Taeniopygia guttata]
Length = 386
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 204/309 (66%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 43 DGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALGEHYVNAALDLIEG 102
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG+LVR +E F
Sbjct: 103 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRKRETF 162
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
+KRR L+GP STLKALE+LT CYI+VQ
Sbjct: 163 IKRRARLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKNIHPIY 222
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KDP L ++W+RFLPKFK+KN+K++K K+ YTPFPPP S+
Sbjct: 223 NIKTLMIKRELAKDPELRTQSWERFLPKFKRKNLKKRKEPKKKNTKKEYTPFPPPQPESQ 282
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEAE 292
+DK L SGEYFL ER+K+ K+ +E + KQA+ + +R+ AFIPP E+P+ + +
Sbjct: 283 VDKELASGEYFLKERQKKRKQMEEIKAKQADAVKRRQEERNKAFIPPKEKPAVKTKKAST 342
Query: 293 DKTNDVAAM 301
+K D+ A+
Sbjct: 343 EKKIDIEAI 351
>gi|344304899|gb|EGW35131.1| hypothetical protein SPAPADRAFT_58320 [Spathaspora passalidarum
NRRL Y-27907]
Length = 351
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 202/309 (65%), Gaps = 39/309 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +++F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWVIDEFKPEDNASGLHFAEESSFMTLFPKYREEYLRNIWSQVTQA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CELNL+EGSMTV TT KT DP +I+KARDLI+LL+RSVP QA+KIL D++ C
Sbjct: 64 LDKHFIKCELNLIEGSMTVKTTPKTFDPAMILKARDLIKLLARSVPFGQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVNNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K K+
Sbjct: 184 RRVVEDCMRNIHPIYYIKELMIKQELSKKPELANEDWSRFLPSFKKRNVVRKKKKMANKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP QP KID +ESGEYFL ++++E KK QEK++KQ E + K++R F
Sbjct: 244 KKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKLQEKRDKQEEVSESRKQERMKDFE 303
Query: 279 PPEEPSRQN 287
P E +N
Sbjct: 304 APTEEKHEN 312
>gi|281351734|gb|EFB27318.1| hypothetical protein PANDA_009447 [Ailuropoda melanoleuca]
Length = 306
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ +S L+L+EG
Sbjct: 10 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLIEG 69
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 70 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 129
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 130 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFSGLKEVRKVVLDTMKNIHPIY 189
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQ--KKVKSKEKKPYTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV + + K KK YTPFPPP S+
Sbjct: 190 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKCKEPKKKTVKKEYTPFPPPQPESQ 249
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 250 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 298
>gi|74147291|dbj|BAE27537.1| unnamed protein product [Mus musculus]
Length = 389
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 191/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 277 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 325
>gi|291230085|ref|XP_002735003.1| PREDICTED: dribble-like, partial [Saccoglossus kowalevskii]
Length = 336
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/315 (47%), Positives = 205/315 (65%), Gaps = 38/315 (12%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK F N GM+ SSF+TLFP+YREKYLQE WP V+ L ++ + L+++EGSM
Sbjct: 19 WKETPFTKDDNPHGMVSESSFATLFPKYREKYLQECWPFVEKTLSDHNIKASLDVIEGSM 78
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV+TTRKT DP+IIVKARD+I+LL+RSVPA QA+++L+D M +IIKIG+LVRNKERFVK
Sbjct: 79 TVTTTRKTWDPFIIVKARDMIKLLARSVPAEQAVRVLEDGMAAEIIKIGSLVRNKERFVK 138
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ L+GPN STLKA+E+LTGCY++VQ
Sbjct: 139 RRQRLIGPNGSTLKAIELLTGCYVMVQGNTVAALGPYNGLKHVRKLATDTMKNVHPIYNI 198
Query: 179 -ILMVKKELEKDPALANENWDRFLPKF--KKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 235
LM+K+EL KD L NE+WDRFLP F K ++ +++ K + KK YTPFPPP SK+D
Sbjct: 199 KTLMIKRELSKDEQLKNESWDRFLPNFHPKSQSKRKQPKKKRTKKQYTPFPPPQPESKLD 258
Query: 236 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP--SRQNSCEAED 293
K + SGEYF+ E ++++K +E++++ E + + +R+ FIPP+EP +Q S + E
Sbjct: 259 KEIASGEYFMKEHQRKAKLREERKQRHVEADVKRQERRNKPFIPPKEPVVKKQKSEQPEK 318
Query: 294 KTNDVAAMAKSLKEK 308
+ + A LK K
Sbjct: 319 TSTKIDIEALKLKIK 333
>gi|448086732|ref|XP_004196171.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359377593|emb|CCE85976.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 372
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 206/313 (65%), Gaps = 39/313 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
+++ KPWD D +ID W+ ++F N G+ E S+F TLFP+YRE+YL++ W +
Sbjct: 5 YNRDKPWDTD-DIDKWQTDEFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDMTRE 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL +++ C
Sbjct: 64 LSKYHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQEDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQ
Sbjct: 124 DVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKGLKVV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL +P +A+E+W RFLP+FKK+NV +KK+K +K+
Sbjct: 184 RRVVEDCMNNVHPIYHIKELMLKQELASNPDIAHEDWSRFLPQFKKRNVARKKLKQSKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPPP QP K+D +ESGEYFL ++++ +K + K+E Q E + K+ R F
Sbjct: 244 KKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALETKREHQKEASETRKQDRMKDFE 303
Query: 279 PPEEPSRQNSCEA 291
PEE + +N A
Sbjct: 304 APEEENYRNELVA 316
>gi|212543807|ref|XP_002152058.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066965|gb|EEA21058.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 309
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/267 (54%), Positives = 180/267 (67%), Gaps = 38/267 (14%)
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE YL+EAWP++ L++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+
Sbjct: 2 TLFPKYREVYLKEAWPLITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIK 61
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+RSVP QA+KIL+D + CDIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT
Sbjct: 62 LLARSVPVQQALKILEDGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTST 121
Query: 174 YILVQI----------------------------------LMVKKELEKDPALANENWDR 199
YILVQ LM+K+EL KDP LA E+WDR
Sbjct: 122 YILVQGNTVSAMGPFKGLKEVRRVIEDCMANIHPIYHIKELMIKRELAKDPTLATESWDR 181
Query: 200 FLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 255
FLP FKK+ + ++ KV K +K YTPFPPP + SKIDK LESGEYFLS++ KE +
Sbjct: 182 FLPNFKKRTLSKRRVPHKVTDKSQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRK 241
Query: 256 QEKQEKQAEKTAENKRKRDAAFIPPEE 282
+E QEKQ EK E ++R F+PP E
Sbjct: 242 EEIQEKQREKREEKMKERQKDFVPPTE 268
>gi|294894848|ref|XP_002774982.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239880765|gb|EER06798.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 526
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 155/291 (53%), Positives = 188/291 (64%), Gaps = 36/291 (12%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
K K K+ + KPWD + IDHWK E F N G+LE SSF+TLFPQYRE YL++ WP
Sbjct: 25 KMKKNKYRRDKPWDHE-GIDHWKYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPD 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----------- 179
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQ
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 180 -----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 216
LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQKK 263
Query: 217 KEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKT 266
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q ++
Sbjct: 264 IAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQRA 314
>gi|331252066|ref|XP_003338607.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317597|gb|EFP94188.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 208/355 (58%), Gaps = 83/355 (23%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFD-------PFWNEGGMLEVSSFSTLFPQYRE 61
+ K K KH K KPWD D +IDHWK+E F+ PF E SSF+TLFP+YRE
Sbjct: 22 IQKSKKQKHRKDKPWDTD-DIDHWKIEPFELEKEKIKPFTEE------SSFATLFPKYRE 74
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
YL+E W + L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP
Sbjct: 75 VYLKEIWSHLTKVLEQHGVTCVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPI 134
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
QA+KILDD + CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 135 TQAVKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTT 194
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPK---- 203
LM+K+EL K+P LA ENWDRFLP
Sbjct: 195 VSAMGPYKGLKVVRRIVIDCMKNIHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTKR 254
Query: 204 ------------------------------FKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 233
F+ + KQK ++ K+KK YTPFPPP P K
Sbjct: 255 KRAKQAKAAKVSEEQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPRK 314
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 287
ID LESGEYF + + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 315 IDLELESGEYFKKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|258577481|ref|XP_002542922.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
gi|237903188|gb|EEP77589.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
Length = 368
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 166/362 (45%), Positives = 216/362 (59%), Gaps = 69/362 (19%)
Query: 17 HDKPKPWDEDPNIDHWKV----------------------EKFDPFWNEGGML-EVSSFS 53
H K KPWD D +ID WKV E+F P N G E SSF
Sbjct: 5 HKKEKPWDTD-DIDKWKVRSWPAPCPVWVNVMLTIFTDQIEEFKPDDNVAGTFAEESSFV 63
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
+LFP+YRE YL+E WP++ AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+
Sbjct: 64 SLFPKYREVYLKETWPIITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIK 123
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL------ 167
LL+RSVP PQA+KIL+D + CDIIKI NLVRNKERFVKRRQ ++GP+ STLKAL
Sbjct: 124 LLARSVPTPQALKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTET 183
Query: 168 ----------------------EILTGCY------ILVQILMVKKELEKDPALANENWDR 199
++ C V+ LM+K+EL KDP LANE+WDR
Sbjct: 184 YLLVQGNTVAAMGPFKGLKEVRRVVEDCMNNIHPIYHVKELMIKRELAKDPKLANESWDR 243
Query: 200 FLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 255
FLP FKK+ + ++ KV K KK YTPFPPP + SK+D +ESGEYFLS++ KE +
Sbjct: 244 FLPHFKKRTLNKRKQPFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQAKERARK 303
Query: 256 QEKQEKQAEKTAENKRKRDAAFIPPEEPS-------RQNSCEAEDKTNDVAAMAKSLKEK 308
+E E+Q +K E ++ D F+PP+E + R+ + DK +D ++K K K
Sbjct: 304 EEVMERQRQKRDEKMKELDKDFVPPKEDTGEQKKKKRKRPEDMTDKVSDGEKLSKKRKSK 363
Query: 309 AK 310
K
Sbjct: 364 EK 365
>gi|195470375|ref|XP_002087483.1| GE15854 [Drosophila yakuba]
gi|378548399|sp|B4P2Y8.1|KRR1_DROYA RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194173584|gb|EDW87195.1| GE15854 [Drosophila yakuba]
Length = 344
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 202/309 (65%), Gaps = 39/309 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGVVEESSFATLFPKYRERYLKEVWPLVEQCLSEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLK++E+LT CY+LVQ LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELM 211
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYFL
Sbjct: 212 KDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYFL 271
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN---DVAAMA 302
++ +K++K+ Q + EKQ E +R+ F+PP E S +S + ED ++ DV A+
Sbjct: 272 NQEQKQAKRNQGRTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSTKVDVKALK 331
Query: 303 KSLKEKAKK 311
L + KK
Sbjct: 332 AKLIKANKK 340
>gi|289740429|gb|ADD18962.1| rRNA processing protein [Glossina morsitans morsitans]
Length = 341
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/283 (51%), Positives = 188/283 (66%), Gaps = 38/283 (13%)
Query: 37 FDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTT 96
F P N ++E S F+T+FP+YREKYL+E WP+V+ L E+ + ELNL+EGSMTV TT
Sbjct: 25 FKPEHNTQSLIEESCFATVFPKYREKYLKEVWPLVQQCLTEHFLKAELNLIEGSMTVKTT 84
Query: 97 RKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHL 156
RKT DPYII+KARD+I+L++RSVP Q+ ++L DE+ CDIIKIG+LVR KE+F+KRRQ L
Sbjct: 85 RKTWDPYIIIKARDMIKLMARSVPFEQSKRVLQDEIGCDIIKIGSLVRKKEKFIKRRQRL 144
Query: 157 VGPNSSTLKALEILTGCYILVQ----------------------------------ILMV 182
+GPN +TLK++E+LT CY+LVQ LM+
Sbjct: 145 IGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQHVRDIVLDTMNNVHPIYNVKALMI 204
Query: 183 KKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 239
K+EL KD LA+E+W RFLPKFK KNV +Q K+K K K Y+PFPP SKIDK L
Sbjct: 205 KRELMKDAQLAHEDWSRFLPKFKNKNVSKRQQPKLK-KGKDDYSPFPPQRLESKIDKKLA 263
Query: 240 SGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
SGEYFL++ ++ +K E+ KQAE + K KR A FIPP E
Sbjct: 264 SGEYFLNKEQQYQRKQHERAAKQAETVQKQKEKRQANFIPPAE 306
>gi|449272282|gb|EMC82271.1| KRR1 small subunit processome component like protein, partial
[Columba livia]
Length = 353
Score = 276 bits (706), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 150/309 (48%), Positives = 204/309 (66%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 11 DGWKEPAFTREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALDEHYVNATLDLIEG 70
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP Q +IL D++ CDIIKIG+LVR ++ F
Sbjct: 71 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQVFRILQDDVACDIIKIGSLVRKRDTF 130
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
+KRR L+GP STLKALE+LT CYI+VQ
Sbjct: 131 IKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKNIHPIY 190
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KDP L +++W+RFLPKFK+KN+K++K K+ YTPFPPP S+
Sbjct: 191 NIKTLMIKRELAKDPELRSQSWERFLPKFKRKNLKKRKEPKKKNTKKEYTPFPPPQPESQ 250
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEAE 292
IDK L SGEYFL ER+K+ K+ +E + KQA+ T + + +R+ AFIPP E+P + +
Sbjct: 251 IDKELASGEYFLKERQKKRKRMEEIKAKQADATKKRQEERNKAFIPPKEKPVVKTKKAST 310
Query: 293 DKTNDVAAM 301
+K D+ A+
Sbjct: 311 EKKVDIEAI 319
>gi|331249379|ref|XP_003337307.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316297|gb|EFP92888.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 206/352 (58%), Gaps = 77/352 (21%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG----MLEVSSFSTLFPQYREKYL 64
+ K K KH K KPWD D +IDHWK+E PF E + E SSF+TLFP+YRE YL
Sbjct: 22 IQKSKKQKHRKEKPWDTD-DIDHWKIE---PFELEKEKIKPLTEESSFATLFPKYREVYL 77
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W + L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP QA
Sbjct: 78 KEIWSHLTKVLEQHGVACVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPITQA 137
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI----- 179
+KILDD + CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 138 VKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTTVSA 197
Query: 180 -----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK 210
LM+K+EL K+P LA ENWDRFLP F K+
Sbjct: 198 MGPYKGLKVVRRIVIDCMKNIHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTKRKRA 257
Query: 211 QKKVKS--KEKKP--------------------------------YTPFPPPPQPSKIDK 236
++ + E++P YTPFPPP P KID
Sbjct: 258 KQAKAAKVSEQQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPRKIDL 317
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 287
LESGEYF + + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 318 ELESGEYFKKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|296212420|ref|XP_002752822.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Callithrix jacchus]
Length = 380
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 202/309 (65%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E +A
Sbjct: 278 IDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPVVKPKKAST 337
Query: 294 KTN-DVAAM 301
+T DVA++
Sbjct: 338 ETKIDVASI 346
>gi|353239326|emb|CCA71242.1| probable KRR1-required for 40S ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 350
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/350 (44%), Positives = 206/350 (58%), Gaps = 85/350 (24%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
GE VNK + H K KPWD D +IDH K +L+ T +YRE
Sbjct: 4 GETPTTVVNKNKR--HRKDKPWDTD-DIDHGK----------SNLLQ-----TRTTRYRE 45
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V
Sbjct: 46 KYLREVWGAVTRALEPHGIACTLDLINGSMSVRTTRKTFDPYIILKARDMIKLLARGVAV 105
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-- 179
QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LTGCY+LVQ
Sbjct: 106 GQAVKILDDAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNT 165
Query: 180 --------------------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+K+EL KDP LA E+WDRFLPKF+K+
Sbjct: 166 VSAMGPYKSLKEVRRIVLDCMKNIHPIYRIKELMIKRELAKDPKLATESWDRFLPKFRKR 225
Query: 208 NVK--QKKVKSKE-------------------------------KKPYTPFPPPPQPSKI 234
++ +K K +E KK YTPFPPP P K+
Sbjct: 226 HLTSAEKSAKKREAAATKAEARQAAAASSGQPMDVDVHEPPKKKKKVYTPFPPPQLPRKV 285
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
D LESGEYFL +KE+++ +++++QAE TA+++ KR A++ PEE +
Sbjct: 286 DLQLESGEYFLKSSEKEAREAIKRKQQQAEVTAQHQAKRAEAYVAPEETA 335
>gi|71896953|ref|NP_001025915.1| KRR1 small subunit processome component homolog [Gallus gallus]
gi|53131247|emb|CAG31803.1| hypothetical protein RCJMB04_11h12 [Gallus gallus]
Length = 381
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 200/312 (64%), Gaps = 39/312 (12%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N + GK K DE + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 10 NVRRPGKKKAVKAVDESELLTVPDGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKE 69
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++
Sbjct: 70 CWPLVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVR 129
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRN+E FVK +GP STLKALE+LT CYI+VQ
Sbjct: 130 ILQDDVACDIIKIGSLVRNRESFVKEEDDFLGPKGSTLKALELLTNCYIMVQGNTVSALG 189
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KDP L +NW+RFLPKFK+KN+K++
Sbjct: 190 PFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKKR 249
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL E +K+ K+ +E + KQA+ + +
Sbjct: 250 KEPKKKNIKKEYTPFPPPQPESQIDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKRQ 309
Query: 271 RKRDAAFIPPEE 282
+R+ AFIPP+E
Sbjct: 310 EERNKAFIPPKE 321
>gi|194758793|ref|XP_001961643.1| GF14827 [Drosophila ananassae]
gi|378548392|sp|B3MM49.1|KRR1_DROAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190615340|gb|EDV30864.1| GF14827 [Drosophila ananassae]
Length = 343
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 189/286 (66%), Gaps = 36/286 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N GM+E SSF+TLFP+YRE+YL+E WP+V+ + E+ + EL+LVEGSM
Sbjct: 23 KIPSFKPEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCVAEHHLKAELDLVEGSMV 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKR
Sbjct: 83 VKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 143 RQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVVETMNNVHPIYNIK 202
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDK 236
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFPP SK+ K
Sbjct: 203 ALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKAKKEYTPFPPAQPESKVGK 262
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
L SGEYFL++ +K++K+ QE+ KQA+ +R+ F+PP E
Sbjct: 263 QLASGEYFLNKEQKQAKRQQERSAKQADAAKRQDERRNKDFVPPTE 308
>gi|401887035|gb|EJT51041.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 366
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 206/334 (61%), Gaps = 56/334 (16%)
Query: 2 GENM--EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDP--FWNEGGMLEVSSFSTLFP 57
GE++ E+ VNK + H K KPWD + +IDHWK+E + LE SSF+ LFP
Sbjct: 16 GEDVAVEEQVNKNKR--HRKDKPWDTE-DIDHWKIEPMTAPDAASHTPFLEESSFTLLFP 72
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+ W + L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R
Sbjct: 73 KYREPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLAR 132
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
V APQA+K+L D + CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LV
Sbjct: 133 GVSAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLV 192
Query: 178 QI----------------------------------LMVKKELEKDPALANENWDRFLPK 203
Q LM+++EL KDP LANE+WDRFLPK
Sbjct: 193 QGNTVSCMGSYKGLKEVRRIIIDCMHNIHPIYRIKELMIRRELAKDPKLANESWDRFLPK 252
Query: 204 FKKKNVKQKKVKSKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSER 248
F+KK++K + +K+ K YTPFPP P SK+D L++GEYFL +
Sbjct: 253 FQKKHLKTSEKTAKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKPK 312
Query: 249 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+KE+ E++E+ AEKT + + +R+ AF+ PEE
Sbjct: 313 EKEAAARAEREERHAEKTEKKRAQREEAFVAPEE 346
>gi|406695196|gb|EKC98508.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 8904]
Length = 366
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 206/334 (61%), Gaps = 56/334 (16%)
Query: 2 GENM--EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDP--FWNEGGMLEVSSFSTLFP 57
GE++ E+ VNK + H K KPWD + +IDHWK+E + LE SSF+ LFP
Sbjct: 16 GEDVAVEEQVNKNKR--HRKDKPWDTE-DIDHWKIEPMTAPDAASHTPFLEESSFALLFP 72
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+ W + L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R
Sbjct: 73 KYREPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLAR 132
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
V APQA+K+L D + CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LV
Sbjct: 133 GVSAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLV 192
Query: 178 QI----------------------------------LMVKKELEKDPALANENWDRFLPK 203
Q LM+++EL KDP LANE+WDRFLPK
Sbjct: 193 QGNTVSCMGSYKGLKEVRRIIIDCMHNIHPIYRIKELMIRRELAKDPKLANESWDRFLPK 252
Query: 204 FKKKNVKQKKVKSKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSER 248
F+KK++K + +K+ K YTPFPP P SK+D L++GEYFL +
Sbjct: 253 FQKKHLKTSEKTAKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKPK 312
Query: 249 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+KE+ E++E+ AEKT + + +R+ AF+ PEE
Sbjct: 313 EKEAAARAEREERHAEKTEKKRAQREEAFVAPEE 346
>gi|444314297|ref|XP_004177806.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
gi|387510845|emb|CCH58287.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
Length = 316
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 164/312 (52%), Positives = 211/312 (67%), Gaps = 39/312 (12%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+I+ W++++F P N G+ E SSF TLFP+YRE YL+E W V +
Sbjct: 5 HNRDKPWDT-PDINKWEIQEFKPEDNASGLPFTEESSFMTLFPKYRETYLREVWGDVTKS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y V+C L+L+EGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAI+IL D++ C
Sbjct: 64 LDKYHVACTLDLIEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPYPQAIRILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNVVNNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K+
Sbjct: 184 RRVVEDCMKNVHPIYHIKELMIKRELSKRPELANEDWSRFLPMFKKRNVARKKSKKPKKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 278
YTPFPP P K+D +ESGEYFLS+++KE KK +E++EKQ EK E +++R FI
Sbjct: 244 KKVYTPFPPAQLPRKVDLEIESGEYFLSKKEKEIKKLKERREKQEEKQVEKEKERRKDFI 303
Query: 279 PPEEPSRQNSCE 290
P E ++S +
Sbjct: 304 APSEKEYKSSLQ 315
>gi|348524604|ref|XP_003449813.1| PREDICTED: KRR1 small subunit processome component homolog
[Oreochromis niloticus]
Length = 386
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 188/289 (65%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E + L+L+EG
Sbjct: 36 DGWKEPPFTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGEVHIKPSLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL D+ CDIIKIG +VR++ERF
Sbjct: 96 SMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQDDTACDIIKIGTMVRSRERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYSGLKEVRKVVLDTMKNIHPIY 215
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KDP L +NW+RFLPKF+ KN+ ++K K+ YTPFPPP SK
Sbjct: 216 NIKTLMIKRELSKDPELRMQNWERFLPKFRHKNLAKRKEPKKKSVKKEYTPFPPPQPESK 275
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+D+ L +GE+FL E K+ KK +E + KQA + + +R+ AFIPP+E
Sbjct: 276 VDQELATGEFFLRESVKKRKKMEEIKVKQATALTKKQEERNKAFIPPKE 324
>gi|332020472|gb|EGI60887.1| KRR1 small subunit processome component-like protein [Acromyrmex
echinatior]
Length = 336
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/308 (48%), Positives = 206/308 (66%), Gaps = 42/308 (13%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N +L SSF+T+FP+YRE+YL+E WP+++ AL EY + EL+L+EGSMTV TTRKT D
Sbjct: 29 NPHRLLVESSFATMFPKYREQYLKEHWPLIQKALDEYHIKAELDLIEGSMTVKTTRKTWD 88
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA+K+L D++ DIIKI + VRNKE+FVKRRQ L+GPN
Sbjct: 89 PYIIIKARDVIKLMARSVPFEQAVKVLQDDITADIIKISSFVRNKEKFVKRRQRLIGPNG 148
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
LK++E+LT CY++VQ LM+K+EL
Sbjct: 149 CNLKSIELLTNCYVVVQGQTVSALGPYKGVQQVRKIVQDTMKNVHPVYSLKTLMLKRELS 208
Query: 188 KDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
K+P L +ENW+R+LPK+ KN+ +++ K KEKKPYTPFPPP Q SKIDK + SGEYFL
Sbjct: 209 KNPKLKDENWERYLPKYTSKNISKRKEPKKKKEKKPYTPFPPPQQESKIDKAMASGEYFL 268
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED-KTN-DVAAMAK 303
E +K +K+ +E + K E T + + +R AF+PPEE E+E KTN D+A + +
Sbjct: 269 KEEQKRAKRKKELEAKHEEATKKRQERRAQAFVPPEE----KPVESETGKTNIDIAEIKR 324
Query: 304 SLKEKAKK 311
++++ KK
Sbjct: 325 KVQQRLKK 332
>gi|225713566|gb|ACO12629.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 215/334 (64%), Gaps = 39/334 (11%)
Query: 25 EDPNIDH-WKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+D +D+ W +E +F P N GM E S F+TLFP+YREKYL+++WP++ L EY +
Sbjct: 16 QDGIVDNAWAMEVPEFKPEHNPKGMSEESKFATLFPKYREKYLKDSWPLILKTLGEYNLK 75
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+DE DIIKIGN
Sbjct: 76 GELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGN 135
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
++ ++RFVKRRQ L+GPN STLK++E+LT CYILVQ
Sbjct: 136 IIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYILVQGNTVSAVGPYQGLKQVRRIVIDT 195
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KD L NENW+RFLPKF+ +N+ ++K K+KK YTPF
Sbjct: 196 MNNIHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQPLKKKKKKEYTPF 255
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
PPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + KR A+I PEE
Sbjct: 256 PPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEKRSKAYIAPEEKEP 315
Query: 286 QNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 319
+ ED D+ +++K KK +K+K+ E
Sbjct: 316 KKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|393246490|gb|EJD53999.1| hypothetical protein AURDEDRAFT_110662 [Auricularia delicata
TFB-10046 SS5]
Length = 390
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/355 (43%), Positives = 210/355 (59%), Gaps = 68/355 (19%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQE 66
VNK + + DKP WD D +ID WK++ F P N G + SSF+TLFP+YREKYL+E
Sbjct: 10 VVNKNKRFRKDKP--WDTD-DIDRWKIDPFKPEDNVAGSFVRESSFATLFPRYREKYLRE 66
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
W AL+ +GV+C L+LV+GSM+V TT KT DPY++ KARD+I+LL+R V QA++
Sbjct: 67 IWGTATRALEGHGVACTLDLVQGSMSVKTTPKTYDPYVLFKARDMIKLLARGVAINQALR 126
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------- 179
+L+D + CDIIKIG +VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 127 VLEDGVACDIIKIGGMVRNKERFVKRRQRIIGPDGSTLKAIELLTECYVLVQGNTVSVLG 186
Query: 180 ---------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK-- 210
LM+K+EL KDP LA E+WDRFLP+F+K+++
Sbjct: 187 PHKKLKEVRRIVEDCMKNIHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRKRHLSSA 246
Query: 211 QKKVKSKE----------------------------KKPYTPFPPPPQPSKIDKLLESGE 242
QK K +E KK YTPFPPP QP K+D LESGE
Sbjct: 247 QKSAKKRELVAHKEEVQVQAGASTSAGTEGKKEKPKKKVYTPFPPPQQPRKVDLQLESGE 306
Query: 243 YFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTND 297
YFL +++E++ E+++KQ E + +R AF+ PEE + E K D
Sbjct: 307 YFLKPKEREARVAAERRKKQEEAGERRREERAQAFVAPEEAKERTVDEKRKKRKD 361
>gi|195388432|ref|XP_002052884.1| GJ19628 [Drosophila virilis]
gi|378548397|sp|B4LTY6.1|KRR1_DROVI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194149341|gb|EDW65039.1| GJ19628 [Drosophila virilis]
Length = 343
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 210/336 (62%), Gaps = 40/336 (11%)
Query: 18 DKPKPWDEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
D P +P + W K+ F N G++E SSF+TLFP+YREKYL+E WP+V+ +
Sbjct: 7 DGPTKQSTEPVDNAWSLKIPTFKAEDNPHGLVEESSFATLFPKYREKYLKEVWPLVQQCV 66
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CD
Sbjct: 67 AEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCD 126
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------- 178
IIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 127 IIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVR 186
Query: 179 -----------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP 221
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K
Sbjct: 187 DIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKNKKPK 246
Query: 222 --YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
YTPFPP SKIDK L +GEYFL++ +K++KK QE+ KQAE + +R+ F+P
Sbjct: 247 KEYTPFPPAQPESKIDKQLATGEYFLNKEQKQAKKQQERSVKQAEAAKKQDERRNKDFVP 306
Query: 280 PEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 313
P E PS+ AE DV A+ L + KK R
Sbjct: 307 PTEDAPSQSRKRPAETSKVDVDALKAKLMKANKKNR 342
>gi|290562854|gb|ADD38821.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 215/334 (64%), Gaps = 39/334 (11%)
Query: 25 EDPNIDH-WKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+D +D+ W +E +F P N GM E S F+TLFP+YREKYL+++WP++ L EY +
Sbjct: 16 QDGIVDNAWAMEVPEFKPEHNPKGMSEESKFATLFPKYREKYLKDSWPLILKTLGEYNLK 75
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+DE DIIKIGN
Sbjct: 76 GELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGN 135
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
++ ++RFVKRRQ L+GPN STLK++E+LT CY+LVQ
Sbjct: 136 IIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQGNTVSAVGPYQGLKQVRRIVIDT 195
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KD L NENW+RFLPKF+ +N+ ++K K+KK YTPF
Sbjct: 196 MNNIHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQPLKKKKKKEYTPF 255
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
PPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + KR A+I PEE
Sbjct: 256 PPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEKRSKAYIAPEEKEP 315
Query: 286 QNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 319
+ ED D+ +++K KK +K+K+ E
Sbjct: 316 KKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|449019223|dbj|BAM82625.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Cyanidioschyzon
merolae strain 10D]
Length = 351
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/322 (46%), Positives = 210/322 (65%), Gaps = 45/322 (13%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K ++ KPKPWD D +IDHWK + F + G LE SSF+TLFP YRE+YL++ WP+V
Sbjct: 21 KNRYRKPKPWDSD-DIDHWKEDPFSEKDSSGPFLEESSFATLFPAYREQYLRQIWPLVTQ 79
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-M 132
L++ G++CELNL+EG+MTV TTRKT DP+ + +ARD I+LL+RSVP QA +IL DE +
Sbjct: 80 HLQKTGIACELNLIEGTMTVRTTRKTYDPFAVFRARDFIKLLARSVPVQQAARILYDEKL 139
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDIIKI VR+++RF++RR+ L+GPN STLKA+E+LT CY+LVQ
Sbjct: 140 YCDIIKISGYVRSRDRFLRRRERLIGPNGSTLKAIELLTNCYVLVQGNTVAAMGDHKGLK 199
Query: 179 --------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 218
LM+K+EL KDP LA ENW+RFLP+FKK+N K+++ K +
Sbjct: 200 QVRRIVEECMQNVHPIYNIKRLMIKRELAKDPELAKENWERFLPQFKKRNQKRRRGKHQT 259
Query: 219 ------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 272
K Y PFPPP +P KID ++ESGEYFL+E++++ K+ E+ E+++E A +RK
Sbjct: 260 DQQEGGSKAYEPFPPPQRPRKIDLMIESGEYFLTEQQRDQKRKTER-ERKSEAVALERRK 318
Query: 273 RDAAFIPPEEPSRQNSCEAEDK 294
A + PS + +A +K
Sbjct: 319 ERAKVW--DAPSHEQMAQAREK 338
>gi|145542859|ref|XP_001457116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424931|emb|CAK89719.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 187/284 (65%), Gaps = 38/284 (13%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
M E E N K K+ K KPWD DP ID WK+ + P G +L SSF+TLFP+YR
Sbjct: 1 MSEQQEGVKNHK---KYRKDKPWDNDPTIDKWKIPEIQPGEMNGSLLAESSFATLFPKYR 57
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKY+QE + MVK ++K++G+ ELNL+EGS+TV TT KT DP+ I+KARD+I+LL+RSVP
Sbjct: 58 EKYIQEVFGMVKKSMKDHGIRAELNLMEGSLTVKTTNKTWDPWAIMKARDIIKLLARSVP 117
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI- 179
Q +++L+D CDIIKI + RNKE+FVKRRQ L+GPN +TLKALE+LT CYI+VQ
Sbjct: 118 VQQCLRLLEDGTFCDIIKIRSYTRNKEKFVKRRQRLIGPNGATLKALELLTDCYIMVQGS 177
Query: 180 ---------------------------------LMVKKELEKDPALANENWDRFLPKFKK 206
LM+K+EL KD + NENWDRFLP FKK
Sbjct: 178 TVSVIGNWKNLKTVRKVVVDTMQNVHPIYSIKELMIKRELSKDENMQNENWDRFLPHFKK 237
Query: 207 KNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 250
+N +++K K+KK YTPFPP QP K D L+ SGEYFL+E+++
Sbjct: 238 QN-QKRKKVIKKKKEYTPFPPEQQPRKEDLLMASGEYFLNEKQR 280
>gi|410078430|ref|XP_003956796.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
gi|372463381|emb|CCF57661.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
Length = 344
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 149/268 (55%), Positives = 179/268 (66%), Gaps = 39/268 (14%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD + +ID W+ E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 YNKEKPWDTE-DIDKWQTEEFKPEDNASGLPFAEESSFMTLFPKYRESYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAIKIL+D M C
Sbjct: 64 LEKHHIACILDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAIKILEDNMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 220
LM+K+EL K P LANE+W RFLP FKK+NV +KK K K+
Sbjct: 184 RRVVEDCMLNVHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIRKE 243
Query: 221 P--YTPFPPPPQPSKIDKLLESGEYFLS 246
YTPFPP P K+D +ESGEYFLS
Sbjct: 244 KKVYTPFPPTQLPRKVDLEIESGEYFLS 271
>gi|240849184|ref|NP_001155707.1| KRR1 small subunit processome component homolog [Acyrthosiphon
pisum]
gi|239788163|dbj|BAH70773.1| ACYPI007346 [Acyrthosiphon pisum]
Length = 291
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 198/289 (68%), Gaps = 36/289 (12%)
Query: 30 DHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLV 87
+ WK E +F P N G+LE S+F+TLFP+YRE YL+E WP+V+ +L +Y + +L+L+
Sbjct: 3 NAWKTEIPEFRPEDNPHGLLEESAFATLFPKYRETYLKECWPLVQNSLSKYHIKADLDLL 62
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
EGSM+V TTRKT DP I+KARDLI+LLSRSVP A+++++D+M DIIKIG++VRN++
Sbjct: 63 EGSMSVRTTRKTWDPASILKARDLIKLLSRSVPYEHAVRVMEDDMAADIIKIGSMVRNRD 122
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------------- 178
+FVKRRQ L+GP TLK++E+LT CY+LVQ
Sbjct: 123 KFVKRRQRLIGPGGCTLKSIELLTNCYMLVQGQTVAALGPFKGLQQVRRIVTDTMKNVHP 182
Query: 179 -----ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 233
LM+K+ELE++P L NENWDRFLP FK KNV +KK K KKPYTPFPP P SK
Sbjct: 183 IYNIKALMIKRELERNPKLKNENWDRFLPNFKPKNVPKKKSTKKPKKPYTPFPPAPAESK 242
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDKLLESGEYFL E +K+ +K + K++KQ E + + KR+ AFIPP E
Sbjct: 243 IDKLLESGEYFLKEDEKQKRKKKVKEDKQKEAKIKREAKRNMAFIPPVE 291
>gi|67607248|ref|XP_666799.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657852|gb|EAL36562.1| hypothetical protein Chro.30334, partial [Cryptosporidium hominis]
Length = 343
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 207/321 (64%), Gaps = 42/321 (13%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 3 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 61
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 62 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 121
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 122 FHQAVRILGDGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 179
Query: 176 LVQI----------------------------------LMVKKELEKDPALANENWDRFL 201
LVQ LM+K+ELEKD L ENWDRFL
Sbjct: 180 LVQGQTVSVIGSYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFL 239
Query: 202 PKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 261
PKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+ +
Sbjct: 240 PKFKNKCVKRKVKKQMKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERISE 299
Query: 262 QAEKTAENKRKRDAAFIPPEE 282
Q EK E ++R+ ++PP E
Sbjct: 300 QKEKKNEKHKEREKIYVPPNE 320
>gi|322785487|gb|EFZ12156.1| hypothetical protein SINV_05919 [Solenopsis invicta]
Length = 339
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/315 (45%), Positives = 205/315 (65%), Gaps = 38/315 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F N +LE SSF+T+FP+YRE YL+E WP+++ AL E+ + E++L+EGSMT
Sbjct: 23 KIPEFKETDNPHRLLEESSFATMFPKYREHYLKEHWPLIQKALAEHHIKVEMDLIEGSMT 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYI++KARD+I+L++RSVP QA+K+L D++ D+IKI + VRNKE+FVKR
Sbjct: 83 VKTTRKTWDPYIVIKARDMIKLMARSVPFEQAVKVLQDDIAADVIKISSFVRNKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN LK++E+LT CY++VQ
Sbjct: 143 RQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYKGVQQVRKLVQDTMKNIHPVYSLK 202
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL K+P L NENW+RFLPK+ KN+ +++ K KEKKPYTPFPPP Q SK+DK
Sbjct: 203 TLMLKRELAKNPTLKNENWERFLPKYNSKNISKRKEPKKKKEKKPYTPFPPPQQESKLDK 262
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN 296
+ SGE+FL E +K +K+ +E++ K E T + +R F+PPEE ++ D
Sbjct: 263 AMASGEFFLKEEQKRAKRKKEQEAKHEEATKRRQERRAQVFMPPEEKPVESETAKTD--I 320
Query: 297 DVAAMAKSLKEKAKK 311
D+A + K +++ KK
Sbjct: 321 DIAEIKKKVQQGLKK 335
>gi|157108481|ref|XP_001650245.1| hiv-1 rev binding protein [Aedes aegypti]
gi|108884005|gb|EAT48230.1| AAEL000708-PA [Aedes aegypti]
Length = 349
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/298 (49%), Positives = 196/298 (65%), Gaps = 39/298 (13%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+ E SSFS LFP+YREKY++E WP+V+ AL + + EL+L++G+MTV TTR T D
Sbjct: 38 NPQGLAEESSFSCLFPKYREKYIKECWPLVEKALDGHHLKAELDLIQGNMTVKTTRNTWD 97
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
P+II+KARDLI+LLSRSVP QA+K+LDDE+ CDIIKI NLVRNK +FVKRR L+GPN
Sbjct: 98 PFIILKARDLIKLLSRSVPFEQAVKVLDDEISCDIIKIKNLVRNKAKFVKRRNRLIGPNG 157
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
TLK+LE+LT CY+LVQ LM+K+EL
Sbjct: 158 CTLKSLELLTNCYVLVQGATVSAIGPYKGLQCVRKVVEETMKNIHPIYNIKALMIKRELM 217
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KD L ENW+RFLPKF+ KN ++K ++KK YTPFPPP SK+DK L SGEYFL
Sbjct: 218 KDDKLKEENWERFLPKFQSKNTTKRKKPKEQKKKKEYTPFPPPLLESKVDKELASGEYFL 277
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAM 301
+E +K++K+ QE++EK+ + + K++R+ F+ P+E P + DK DV A+
Sbjct: 278 TEAQKKAKRMQERREKEQKSSNVQKQRREKDFVAPDESKPKPKGDARNSDKV-DVKAL 334
>gi|399217414|emb|CCF74301.1| unnamed protein product [Babesia microti strain RI]
Length = 367
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/296 (51%), Positives = 188/296 (63%), Gaps = 39/296 (13%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQE 66
TVNK K + DKP WD D NIDHW+++ F P N GG E SSF+TLFP+YREKY+Q
Sbjct: 21 TVNKNKKYRRDKP--WD-DENIDHWEIQPFKPEDNLGGHFAEESSFATLFPKYREKYIQS 77
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
W VK L E+ + C L+LVEGSM+V T++KT DPYII+KARD+I+LL+RSVP QA K
Sbjct: 78 IWADVKKCLGEHNIRCNLDLVEGSMSVYTSKKTWDPYIIIKARDMIKLLARSVPFAQARK 137
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------- 179
IL D + CDI+KIG L+RNKE+FVKRRQ LVGP +TLKALEILT CYIL Q
Sbjct: 138 ILLDGVYCDIVKIGGLIRNKEKFVKRRQRLVGPGGTTLKALEILTECYILTQGQTVSIMG 197
Query: 180 ---------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L NENWDRFLP+FKK+NV Q+
Sbjct: 198 PFKGVKLARRIVEDCMRNIHPVYHIKELMIKRELNKDENLKNENWDRFLPQFKKRNV-QR 256
Query: 213 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
K +KK P P K D +LE+GEYFL E ++ K +EK+ ++ K E
Sbjct: 257 KKFKSKKKNSNSIIPDQTPRKEDIMLETGEYFLKEHVRKEKALKEKKRRKTIKLEE 312
>gi|209880169|ref|XP_002141524.1| KH domain-containing protein [Cryptosporidium muris RN66]
gi|209557130|gb|EEA07175.1| KH domain-containing protein [Cryptosporidium muris RN66]
Length = 369
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/325 (50%), Positives = 211/325 (64%), Gaps = 44/325 (13%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K ++ K KPWD D IDHWKV + P N G+LE SSF+ LFP+YREKYL++ WP VK
Sbjct: 24 KKRYRKDKPWDND-TIDHWKVPRLCPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDVKN 82
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL----- 128
ALKEY + CEL+LVEGSMTV TT KT DP+II++ARDLIRLL+RSVP QA++IL
Sbjct: 83 ALKEYQIKCELDLVEGSMTVRTTGKTWDPFIIIRARDLIRLLARSVPFHQAVRILGYGED 142
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------- 179
D+ + CDIIKIG+ RNKE+F+KRRQ LVGPN STLKA+E+LT CYILVQ
Sbjct: 143 DNNLGCDIIKIGH--RNKEKFIKRRQRLVGPNGSTLKAIELLTNCYILVQGQTVSVIGPY 200
Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 214
LM+K+ELEKD L NENWDRF+PKFK K ++K
Sbjct: 201 KGLKQVYRIVEDCMNNIHPIYHIKELMIKRELEKDEKLRNENWDRFIPKFKNK-CIKRKE 259
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
K + KK + FPP P K D L+ESGEYF +E +++S K E+ +Q EK + K++R+
Sbjct: 260 KKRIKKEKSLFPPEQLPRKEDILIESGEYFANEMERKSIKMNERISRQKEKREQKKKERE 319
Query: 275 AAFIPPEEPSRQNSCEAEDKTNDVA 299
FI P++ S++N E ++ V
Sbjct: 320 KLFI-PQDNSKKNLDEYKEDIKSVV 343
>gi|242024225|ref|XP_002432529.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
gi|212517981|gb|EEB19791.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
Length = 341
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 190/286 (66%), Gaps = 36/286 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
KV +F N +LE SSF+TLFP+YRE YL++ WP ++ L EYG+ EL+++EGSM
Sbjct: 22 KVPEFKKEDNPHRLLEESSFATLFPKYREPYLRQYWPQIQKVLNEYGIKGELDVIEGSMK 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+I+LLSRSVP QAI++L+D++ CDIIKIG+LVRN+E+F+KR
Sbjct: 82 VKTTRKTWDPYIIIKARDMIKLLSRSVPFEQAIRVLEDDIFCDIIKIGSLVRNREKFIKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQI--------------------------------- 179
RQ ++GP TLK++E+LT CY+LVQ
Sbjct: 142 RQRIIGPGGCTLKSIELLTNCYVLVQGQTVAALGPYKGLMEVRSIVEKTMFNMHPIYKIK 201
Query: 180 -LMVKKELEKDPALANENWDRFLPKF--KKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDK 236
LM+K+EL KDP L NENW+RFLPKF K K+K KEKKPYTPFPPP SKIDK
Sbjct: 202 ELMIKRELAKDPILKNENWERFLPKFKNKHLPKKKKPKNKKEKKPYTPFPPPQTESKIDK 261
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
LESGEYF++E +K+ K+ +E E+ E + KR FIPPEE
Sbjct: 262 QLESGEYFMTEAQKQQKRKREINERHEEAKKRREEKRKLPFIPPEE 307
>gi|225709722|gb|ACO10707.1| KRR1 small subunit processome component homolog [Caligus
rogercresseyi]
Length = 353
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/320 (48%), Positives = 207/320 (64%), Gaps = 41/320 (12%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQ 58
M ++ + N + G ++PK + + W +E +F P N GMLE S F+TLFP+
Sbjct: 1 MSDSEDSYGNHREDGHEEQPKSGVVE---NAWAMEVPEFKPEHNPRGMLEESKFATLFPK 57
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YREKYL+E+WP+V L E+ + EL+L+EGSM V TTRKT DP+II+KARD+++LL+RS
Sbjct: 58 YREKYLKESWPLVVKTLGEHHLKAELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARS 117
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VP AIKILDD+ D+IKIGNLV ++RFVKRRQ L+GPN STLK++E+LT CY+LVQ
Sbjct: 118 VPYEHAIKILDDQFGSDVIKIGNLVPKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQ 177
Query: 179 ----------------------------------ILMVKKELEKDPALANENWDRFLPKF 204
LM+K+EL KD L NENW+RFLPKF
Sbjct: 178 GNTVAAVGPYQGLKQVRRIVLDTLNNIHPIYNIKSLMIKRELMKDENLKNENWERFLPKF 237
Query: 205 KKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQ 262
+ KN+ ++K K+KK YTPFPPP SK+DK L SGEYFL E +K+ KK QE++EKQ
Sbjct: 238 ENKNISKRKQPLKKKKKKEYTPFPPPMPESKLDKELASGEYFLKESEKKLKKLQERREKQ 297
Query: 263 AEKTAENKRKRDAAFIPPEE 282
AE + + KR A+I P+E
Sbjct: 298 AEAALKREAKRSKAYIAPDE 317
>gi|307183875|gb|EFN70489.1| KRR1 small subunit processome component-like protein [Camponotus
floridanus]
Length = 305
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/277 (50%), Positives = 186/277 (67%), Gaps = 36/277 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N +LE SSF+T+FP+YRE+YL+E W +V+ AL E+ V EL+LVEGSMTV TTRKT D
Sbjct: 24 NPHRLLEESSFATMFPKYREQYLKEHWALVQKALAEHHVKAELDLVEGSMTVKTTRKTWD 83
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD+I+L++RSVP QA+++L D++ D+IKI +LVRNK +FVKRRQ L+GPN
Sbjct: 84 PYIIVKARDMIKLMARSVPFEQAVRVLQDDIAADVIKISSLVRNKAKFVKRRQRLIGPNG 143
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
LK++E+LT CY++VQ LM+K+EL
Sbjct: 144 CNLKSIELLTNCYVVVQGQTVSALGPYKGLQQVRKVVEDTMRNIHPVYSLKALMLKRELA 203
Query: 188 KDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
K+P L NENW+++LPK+ KN+ +++ K K KKPYTPFPPP Q SKIDK + SGEYFL
Sbjct: 204 KNPKLKNENWEQYLPKYNSKNISKRKEPKKKKVKKPYTPFPPPQQESKIDKEMASGEYFL 263
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
E +K +K+ +E Q K E + +R AFIPPEE
Sbjct: 264 KEEQKRAKRRKEYQAKHEEAAKRREERRAQAFIPPEE 300
>gi|323509785|dbj|BAJ77785.1| cgd3_2950 [Cryptosporidium parvum]
Length = 302
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 193/297 (64%), Gaps = 42/297 (14%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 6 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 64
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 65 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 124
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 125 FHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 182
Query: 176 LVQI----------------------------------LMVKKELEKDPALANENWDRFL 201
LVQ LM+K+ELEKD L ENWDRFL
Sbjct: 183 LVQGQTVSVIGSYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWDRFL 242
Query: 202 PKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 258
PKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+
Sbjct: 243 PKFKNKCVKRKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKER 299
>gi|328909187|gb|AEB61261.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 324
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/302 (48%), Positives = 191/302 (63%), Gaps = 41/302 (13%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + + KP D D + D WK F N G+LE SSF+TLFP+YRE YL++
Sbjct: 19 KSESRRQNAKPEDRDESELLTVPDGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKD 78
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 79 CWPLVQKALNEHHVNAALDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 138
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 139 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 198
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 199 PFNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 258
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L S EYFL +K+ +K + + KQ +++ K
Sbjct: 259 KEPKKKTVKKEYTPFPPPQPESQIDKELASCEYFLKASQKKRQKMEAVKAKQQKRSVRGK 318
Query: 271 RK 272
RK
Sbjct: 319 RK 320
>gi|170593983|ref|XP_001901743.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
gi|158590687|gb|EDP29302.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
Length = 350
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 208/324 (64%), Gaps = 47/324 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+++ +E+ + +L+++EG++
Sbjct: 27 WDISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLIQKVFEEHFLKADLDVLEGTV 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQDDTASEIIKISSMVANKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G +TLKA+E+LT CYI+VQ
Sbjct: 147 RRARLIGNEGATLKAIELLTKCYIMVQGSTVAAVGPYEGLKHVRMIVEDCMNNIHPIYNI 206
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
LM+K+EL KD L NENWDRFLPKFKKK K+K + K+K YTPFPPP
Sbjct: 207 KTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQSTNQAKKKKAARWKKKAEYTPFPPP 266
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR-QN 287
P SKIDK LESGEYFLSE+ ++ +K EK+ KQ EKTAE K++R + ++PP+ +R +N
Sbjct: 267 PVMSKIDKQLESGEYFLSEKTRQMEKRNEKRTKQMEKTAERKKQRASEYMPPDGKTRPKN 326
Query: 288 SCEAEDKTNDVAAMAKSLKEKAKK 311
S + + N+V ++LK+K +K
Sbjct: 327 SYK---RANEVPIDIENLKKKVRK 347
>gi|324517589|gb|ADY46864.1| KRR1 small subunit processome component [Ascaris suum]
Length = 358
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 187/297 (62%), Gaps = 43/297 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF++LFP+YREKYL+E WP+V+ + E+ + EL+++EG+M
Sbjct: 34 WDISTFSREDNPSGLVCESSFASLFPKYREKYLRECWPLVQKTMDEHFLKAELDVLEGTM 93
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYI++KARD+++LL+RSVP QAI++L+D++ CDIIKI ++V +KERFVK
Sbjct: 94 VVRTTRKTWDPYILIKARDVLKLLARSVPYEQAIRVLNDDISCDIIKISSMVSSKERFVK 153
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR LVG N +TLKA+E+LT CY+++Q
Sbjct: 154 RRARLVGNNGATLKAIELLTQCYVMIQGGTVAAVGPYQGLKNVHTIVEDCMHNIHPIYNI 213
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---------YTPFPPP 228
LM+K+EL KD L NENWDRFLPKFKKK + +KK YTPFPPP
Sbjct: 214 KTLMIKRELMKDDKLKNENWDRFLPKFKKKMQSSQSTNQAKKKKAARWKRKAEYTPFPPP 273
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
P SKIDK LE+GEYF++ER + +K K+ +Q EK E ++ R + F P EE R
Sbjct: 274 PTMSKIDKQLETGEYFMNERTRLLEKRNAKRARQNEKAVERQQTRASLFTPGEEKPR 330
>gi|403222226|dbj|BAM40358.1| ribosomal RNA assembly protein [Theileria orientalis strain
Shintoku]
Length = 396
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/264 (53%), Positives = 175/264 (66%), Gaps = 35/264 (13%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD D IDHWK+E F NE ++E SSFS LFP+YREKY+Q W VK L
Sbjct: 9 KYRKDKPWD-DETIDHWKIEPFTQEDNEPSLVEESSFSVLFPKYREKYIQSVWGDVKKCL 67
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+Y + CEL+L+EGSM V T+ KT DPYII+KARD+I+LL+RSVP PQA K+LDD + CD
Sbjct: 68 SQYHIKCELDLLEGSMAVITSSKTWDPYIIIKARDMIKLLARSVPFPQARKVLDDGVFCD 127
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
I+KIG ++RNK++FVKRRQ LVGP STLKALE+LTGCYIL Q
Sbjct: 128 IVKIGGILRNKDKFVKRRQRLVGPGGSTLKALELLTGCYILTQGQTVSIVGPIQGIKVAR 187
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP 221
LM+K+EL+KD L NENW+RFLP+FKK+ VK+KK K +KK
Sbjct: 188 RIVEDCMKNIHPVYHIKELMIKRELQKDEKLKNENWERFLPQFKKRCVKRKKTKIVKKKS 247
Query: 222 YTPFPPPPQPSKIDKLLESGEYFL 245
T P P K D LLE+GEYF+
Sbjct: 248 PTLLLPVQTPRKEDILLETGEYFM 271
>gi|380015443|ref|XP_003691711.1| PREDICTED: KRR1 small subunit processome component homolog [Apis
florea]
Length = 340
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 196/303 (64%), Gaps = 40/303 (13%)
Query: 16 KHDKPKPWDEDPNIDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K D PK P + W +E F P N +L+ SSF+TLFP+YRE+YL+E WP+++
Sbjct: 6 KEDAPK--TTGPVDNAWSLEIPSFKPEDNPNRLLQESSFATLFPKYREQYLKEHWPLIQK 63
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL EY + EL+ +EGSMTV TTRKT DPYII+KARD+I+L+SRSVP QAI++L D++
Sbjct: 64 ALDEYAIKAELDFIEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAIRVLQDDIS 123
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------- 178
DIIKI + VRN+E+FVKRRQ L+GP TLK++E+LT CY+LVQ
Sbjct: 124 SDIIKISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVLVQGQTVAALGPYRSLPL 183
Query: 179 -------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSK 217
LM+K+EL KDP L NENW+RFLPKF KN+ ++ K
Sbjct: 184 VRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNINKRKQPKNKK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKKPYTPFPPP Q SKIDK++ +GEYFL+E +K +KK +E+ K E + +R AF
Sbjct: 244 EKKPYTPFPPPQQESKIDKMISTGEYFLNEEQKRAKKKREQDIKHQEAEKRRQERRAQAF 303
Query: 278 IPP 280
+PP
Sbjct: 304 VPP 306
>gi|405964866|gb|EKC30308.1| KRR1 small subunit processome component-like protein [Crassostrea
gigas]
Length = 885
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 188/289 (65%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK N G++ SSF+TLFP+YRE Y+ E WP+VK L ++ + EL+LVEG
Sbjct: 26 DGWKEPGIAKEQNPHGVVSESSFATLFPKYRENYINECWPLVKKTLGDHNIKAELDLVEG 85
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII+KARDL++LL+RSVP QA+++L+D+ CDIIKIG+L RNKERF
Sbjct: 86 SMTVRTTKKTWDPYIIIKARDLLKLLARSVPYEQAVRVLEDDTACDIIKIGSLTRNKERF 145
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GPN STLKA+EILT CYILVQ
Sbjct: 146 VKRRQRLIGPNGSTLKAIEILTDCYILVQGNTVSALGPYKGLREVRKIVEDTMKNIHPIY 205
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQP--SK 233
LM+KKEL KDP L NENW+RF+PKFK KN+ ++K K++ P PP SK
Sbjct: 206 NIKTLMIKKELAKDPELRNENWERFIPKFKSKNISKRKQPKKKRVKKPYTPFPPPQPESK 265
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+DK L SGEYFL +K++K QEK+EKQ + +++ KR AF+ P+E
Sbjct: 266 VDKELASGEYFLKPHQKKAKIQQEKKEKQLKAVQKSQEKRAKAFVAPKE 314
>gi|312080672|ref|XP_003142700.1| dribble-PA [Loa loa]
gi|307762133|gb|EFO21367.1| hypothetical protein LOAG_07118 [Loa loa]
Length = 382
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 190/297 (63%), Gaps = 43/297 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+V+ A +E+ + +L+L+EG+M
Sbjct: 27 WDISTFSKEDNPNGLICESSFAILFPKYREKYIRECWPLVQKAFEEHFLKVDLDLLEGTM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QAI++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAIRVLQDDTASEIIKISSMVANKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G +TLKA+E+LT CY++VQ
Sbjct: 147 RRARLIGNEGATLKAIELLTKCYVMVQGSTVAAVGPYEGLKHVRVIVEDCMNNIHPIYNI 206
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
LM+K+EL KD L NENWDRFLPKFKKK K+K + K+K YTPFPPP
Sbjct: 207 KTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQLTNQAKKKKAARWKKKAGYTPFPPP 266
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
P SKID+ LESGEYFLSER K+ +K EK+ KQ EKT E K++R + F P+ +R
Sbjct: 267 PVMSKIDRQLESGEYFLSERTKQMEKRNEKRTKQLEKTVERKKQRASEFTLPDGKAR 323
>gi|391344944|ref|XP_003746754.1| PREDICTED: KRR1 small subunit processome component homolog
[Metaseiulus occidentalis]
Length = 280
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 142/274 (51%), Positives = 177/274 (64%), Gaps = 42/274 (15%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
P D DP WKV F N G++ SSF+ LFP+YREKYL+E WP+VK L E+GV
Sbjct: 11 PEDADP----WKVPDFTKDDNPSGVVCESSFAMLFPKYREKYLKEVWPLVKKTLGEHGVE 66
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+++EGSM V TT++ DPYII+KARDLI+LLSRSVP QA +IL+D++ CDIIKIG
Sbjct: 67 AELDVIEGSMIVKTTKQMWDPYIIIKARDLIKLLSRSVPFEQAARILEDDIACDIIKIGG 126
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
+VR K+RFVKRRQ LVGPN +TLKA+EILT CY+LVQ
Sbjct: 127 MVRRKDRFVKRRQRLVGPNGATLKAMEILTDCYVLVQGNTVSTLGPYRGLKQVRKIVEDC 186
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSKEKKPYTP 224
+M+K+EL KDP L +ENW+RFLPK KN+ KQ +VK + K Y P
Sbjct: 187 MNNIHPIYHIKTMMIKRELAKDPELKDENWERFLPKLVNKNISKRKQPRVK-RTKGEYNP 245
Query: 225 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 258
FPP P SKID LE+GEYFL E K +K +E+
Sbjct: 246 FPPAPPKSKIDTELETGEYFLKEVDKRKRKRKEQ 279
>gi|340504633|gb|EGR31059.1| ribosomal RNA assembly, putative [Ichthyophthirius multifiliis]
Length = 359
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 195/307 (63%), Gaps = 35/307 (11%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
K K K+ K KPWD DP +D WK+E+F + E SSF+TLFPQYREKY+QE++
Sbjct: 10 TKSKKNKYRKDKPWDNDPTLDKWKIEEFKKGDMPYTLSEESSFATLFPQYREKYIQESFG 69
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+K L +YG+ +LNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++
Sbjct: 70 NIKKTLNDYGIKADLNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVME 129
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------- 179
D + D++KI NLVRNKE+F+KRRQ L+GPN TLKALE+LT CYI+VQ
Sbjct: 130 DGVFSDVVKIRNLVRNKEKFIKRRQRLIGPNGQTLKALELLTECYIMVQGSTVSCIGGWK 189
Query: 180 ------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 215
LM+KKEL KD L +ENWDRFLP+FKK N K+K+ K
Sbjct: 190 QLKVLRRIIEDTMHNIHPIYNIKELMIKKELMKDDKLKDENWDRFLPQFKKINAKKKQKK 249
Query: 216 SKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
K +K YTPFPP QP KID +++GEYFL E +K+ ++K KQ K + ++
Sbjct: 250 QKVQKKEYTPFPPEQQPRKIDIEIQTGEYFLKESEKKQNNLKQKIIKQENKIQQKMDQKS 309
Query: 275 AAFIPPE 281
+ PE
Sbjct: 310 KLYEAPE 316
>gi|388583024|gb|EIM23327.1| ribosomal RNA assembly protein mis3 [Wallemia sebi CBS 633.66]
Length = 382
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/345 (45%), Positives = 206/345 (59%), Gaps = 82/345 (23%)
Query: 16 KHDKPKPWDEDPNIDH----WKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQEA 67
++ K K WD + IDH WKV D F NE G E SSF+TLFP+YREKYL+E
Sbjct: 16 RYRKEKAWDHE-GIDHCHYKWKV---DTFTNEDNPAGSFAEESSFATLFPKYREKYLREV 71
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
WP V AL+++G++C L++VEGSMTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+
Sbjct: 72 WPHVTRALEKHGINCVLDMVEGSMTVKTTRKTYDPYIILKARDLIKLLSRSVPFSQAVKV 131
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------- 179
L+DE DIIKIG LVRNK+RFVKRRQ ++GPN +TLKA+E+LT CYILVQ
Sbjct: 132 LEDEYAADIIKIGGLVRNKDRFVKRRQRIIGPNGNTLKAIELLTECYILVQGNTVSVMGP 191
Query: 180 --------------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---- 209
LM+K++L +DP LA E+WDRFLP FKK+N
Sbjct: 192 FKGLKNVRRIILDCMNNVHPIYHIKELMIKRQLAEDPNLAGESWDRFLPSFKKRNQTTSE 251
Query: 210 --------------------------------KQKKVKSKEKKPYTPFPPPPQPSKIDKL 237
++ +K+ ++K YTPFPPP QP KID
Sbjct: 252 KTASKNRKLEHRAEARGMDVDALRQEDAAKERERSHIKADKQKVYTPFPPPQQPKKIDLQ 311
Query: 238 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+ESGEYFL +K+SK+ +E++ Q E + + K +R + P+E
Sbjct: 312 IESGEYFLKPYEKKSKEREERKHTQEENSKKRKAERAKDLVAPDE 356
>gi|118348580|ref|XP_001007765.1| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|89289532|gb|EAR87520.1| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 1028
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 186/286 (65%), Gaps = 43/286 (15%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGM----LEVSSFSTLFPQYREKYLQEAWP 69
K K+ K KPWD DP +D WK+E F N+G M E SSF+TLFPQYREKY+QE +
Sbjct: 684 KNKYRKDKPWDNDPTLDKWKIEPF----NKGDMSEPLAEESSFATLFPQYREKYIQECFG 739
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
VK L EYG+ ELNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++
Sbjct: 740 NVKKVLSEYGIKAELNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVME 799
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------- 179
D + D++KI +LV+NKE+F+KRRQ L+GPN TLKALE+LT CYI+VQ
Sbjct: 800 DGVFSDVVKIRSLVKNKEKFIKRRQRLIGPNGQTLKALELLTNCYIMVQGSTVSCIGDWR 859
Query: 180 ------------------------LMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKV 214
LM+K+EL KD L NENWDRFLP+F K K+ K
Sbjct: 860 QLKILRRIVEDTMFNIHPIYNIKELMIKRELAKDEKLKNENWDRFLPQFKKMNVKKKAKK 919
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 260
+ EKK YTPFPP QP K D +E+GEYF++E++K++K + K +
Sbjct: 920 QKVEKKEYTPFPPEQQPRKEDIAMETGEYFMTEKEKKTKDLRNKMQ 965
>gi|396463320|ref|XP_003836271.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
gi|312212823|emb|CBX92906.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/303 (49%), Positives = 195/303 (64%), Gaps = 40/303 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEPFKPEDNVAGAFTDESRFSTLFPKYREQYLKGSWKFITSAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDD++ D
Sbjct: 64 AKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL---------------------------- 167
IIKI NLV NK+RFVKRRQ ++GPN STLKAL
Sbjct: 124 IIKIRNLVGNKDRFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFKGLKTVR 183
Query: 168 ----EILTGCYILVQI--LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 217
+ + + + I LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV K
Sbjct: 184 RIIEDTMHNIHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTDK 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
KK YTPFPPP + SK+D +ESGE+FL + KE K +E++EK +K +++R A +
Sbjct: 244 SKKVYTPFPPPQEKSKVDLQIESGEFFLGKHAKERKAREEREEKMKDKMDAKRKERMAEY 303
Query: 278 IPP 280
+ P
Sbjct: 304 VAP 306
>gi|84994724|ref|XP_952084.1| ribosomal RNA assembly protein [Theileria annulata strain Ankara]
gi|65302245|emb|CAI74352.1| ribosomal RNA assembly protein, putative [Theileria annulata]
Length = 355
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/298 (51%), Positives = 190/298 (63%), Gaps = 41/298 (13%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ + KPWD D IDHWK+E F NE ++E SSF LFP+YREKY+Q W VK L
Sbjct: 10 KYRRDKPWDND-TIDHWKIEPFTSEENEPSLVEESSFRILFPKYREKYIQSVWGDVKRCL 68
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +IL+D + CD
Sbjct: 69 SQYHINCELDLLEGSMTVITTNKTWDPYIIIKARDLIKLLARSVPFPQAKRILEDGVYCD 128
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKIG L+RNKE+F+KRRQ LVGP STLKALE+LT CYIL Q
Sbjct: 129 IIKIGGLIRNKEKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSAIGSIKGIKTVR 188
Query: 180 ------------------LMVKKELEKDPALAN-----ENWDRFLPKFKKKNVKQKKVKS 216
L++K+EL K+ L N ENWDRFLP FKK+ VK+KK K
Sbjct: 189 KIVEDCIYNIHPVYYIKELIIKRELNKNEKLKNVPNPIENWDRFLPHFKKRCVKRKKTKV 248
Query: 217 KEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
+KK P QP K D LLE+GEYF+ E +++ K+ E++EKQ K E K K+
Sbjct: 249 VKKKSENALLIPIQQPRKEDILLETGEYFMREEERKRKQQFERREKQKLKHQEKKLKK 306
>gi|349806193|gb|AEQ18569.1| hypothetical protein [Hymenochirus curtipes]
Length = 271
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/253 (52%), Positives = 171/253 (67%), Gaps = 35/253 (13%)
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E WP+V+ AL E V EL+L+EGSMTVSTT+KT DPY I++ARDLI+LL+RSVP QA
Sbjct: 1 KECWPLVQKALGESFVKAELDLIEGSMTVSTTKKTYDPYSIIRARDLIKLLARSVPFDQA 60
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------ 178
++IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 61 VRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSA 120
Query: 179 ----------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV- 209
LM+K+EL KDP L ++W+RFLP FK KN+
Sbjct: 121 LGPFNGLKEIRKVVLETMKNIHPIYNIKALMIKRELAKDPELRTKSWERFLPTFKHKNIS 180
Query: 210 KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 269
K+K+ K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE +
Sbjct: 181 KRKEPKKSVKREYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEIKAKQAEAVTKR 240
Query: 270 KRKRDAAFIPPEE 282
+ +R+ AFIPP+E
Sbjct: 241 QEERNKAFIPPKE 253
>gi|392575468|gb|EIW68601.1| hypothetical protein TREMEDRAFT_31674 [Tremella mesenterica DSM
1558]
Length = 395
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 197/340 (57%), Gaps = 74/340 (21%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKF--DPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHWK++ F P + E SSFS LFP+YRE L+ W +
Sbjct: 37 RHRKEKPWDTD-DIDHWKIDPFPPPPVTSHTPFAEESSFSLLFPKYREPKLRTWWGEITS 95
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
LK + CEL+LV+G MTV TTRKT DPY+++K RD+++LL+R V PQ KIL D++
Sbjct: 96 KLKTVELDCELDLVQGKMTVKTTRKTWDPYVVLKGRDMLKLLARGVDPPQVYKILQDDIA 155
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CD+I IG LVRNKERFVKRR ++GPN STLKA+E+LT CY+LVQ
Sbjct: 156 CDVIPIGGLVRNKERFVKRRARILGPNGSTLKAIELLTECYVLVQGNTVSAMGSYKGLKE 215
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK--------- 210
LM+++EL KDP L NENWDRFLPKF+K+++K
Sbjct: 216 VRRIIVDCMNNIHPIYRIKELMIRRELAKDPKLVNENWDRFLPKFQKRHLKTSEKTARKN 275
Query: 211 -------------------------QKKVKSKE---KKPYTPFPPPPQPSKIDKLLESGE 242
++K+ E KK YTPFPPP QPSK+D + SGE
Sbjct: 276 AKLSHPQLNNTNPNAIVIQNDESSQSSQLKTTEKPKKKIYTPFPPPQQPSKLDLQMASGE 335
Query: 243 YFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
YFL +++E+ + + + EKQAEK + K +R+ AFI P E
Sbjct: 336 YFLKPKEREALEKKRRLEKQAEKAEKKKSEREEAFIAPPE 375
>gi|71031110|ref|XP_765197.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352153|gb|EAN32914.1| hypothetical protein, conserved [Theileria parva]
Length = 349
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/274 (52%), Positives = 182/274 (66%), Gaps = 37/274 (13%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+H+ K+ + KPWD+D IDHWK+E F NE ++E SSF LFP+YREKY+Q W V
Sbjct: 7 RHR-KYRRDKPWDDD-TIDHWKIEPFTKEENEPSLVEESSFRILFPKYREKYIQSVWGDV 64
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K L +Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +ILDD
Sbjct: 65 KNCLSQYHINCELDLLEGSMTVITTDKTWDPYIIIKARDLIKLLARSVPFPQAKRILDDG 124
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------------ 179
+ CDIIKIG L+RNK++F+KRRQ LVGP STLKALE+LT CYIL Q
Sbjct: 125 VYCDIIKIGGLIRNKDKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSVIGSIKGI 184
Query: 180 ----------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK 217
L++K+EL K+ L NENWDRFLP+FKK+ VK++KVK
Sbjct: 185 KTVRKIVEDCIYNIHPVYYIKELIIKRELSKNEKLKNENWDRFLPQFKKRCVKRRKVKVV 244
Query: 218 EKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKK 250
KK + P QP K D LLE+GEYF+ E ++
Sbjct: 245 RKKKENSLLIPEQQPRKEDILLETGEYFMREEER 278
>gi|405119935|gb|AFR94706.1| ribosomal RNA assembly protein mis3 [Cryptococcus neoformans var.
grubii H99]
Length = 406
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/231 (54%), Positives = 156/231 (67%), Gaps = 37/231 (16%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHW +E+F E LE SSF+ LFP+YRE YL+ W +
Sbjct: 26 RHRKDKPWDTD-DIDHWALEEFKAPNPEAHKPFLEESSFALLFPKYREPYLRSVWSSITS 84
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL+ YG++CEL+LV+G MTV TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D +
Sbjct: 85 ALEAYGLACELDLVQGKMTVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILEDGIA 144
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQ
Sbjct: 145 CDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKGLKE 204
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK 210
LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 205 VRRIILDCMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 326 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEIAQERRAVREEAFVAPP 385
Query: 282 E 282
E
Sbjct: 386 E 386
>gi|58265972|ref|XP_570142.1| rRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110418|ref|XP_776036.1| 90S preribosome/SSU processome component KRR1 [Cryptococcus
neoformans var. neoformans B-3501A]
gi|50258704|gb|EAL21389.1| hypothetical protein CNBD0850 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226375|gb|AAW42835.1| rRNA processing-related protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 402
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 128/237 (54%), Positives = 157/237 (66%), Gaps = 49/237 (20%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFD--------PFWNEGGMLEVSSFSTLFPQYREKYLQEA 67
+H K KPWD D +IDHW +E+F PF LE SSF+ LFP+YRE YL+
Sbjct: 26 RHRKDKPWDTD-DIDHWAMEEFKAPNPETHKPF------LEESSFALLFPKYREPYLRSV 78
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
W + AL+ YG++CEL+LV+G MTV TTRKT DPYII K RDL++LL+R V APQAIKI
Sbjct: 79 WSSITSALEAYGLACELDLVQGKMTVKTTRKTWDPYIIFKGRDLLKLLARGVNAPQAIKI 138
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------- 179
L+D + CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQ
Sbjct: 139 LEDGIACDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGS 198
Query: 180 --------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK 210
LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 199 YKGLKEVRRIILDCMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 322 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEVAQERRAVREEAFVAPP 381
Query: 282 E 282
E
Sbjct: 382 E 382
>gi|229367208|gb|ACQ58584.1| KRR1 small subunit processome component homolog [Anoplopoma
fimbria]
Length = 347
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 183/294 (62%), Gaps = 39/294 (13%)
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+E WP+V+ AL E + L+L+EGS+TV TT+KT DPY I++AR LI+LL+R
Sbjct: 27 KYREAYLKECWPLVEKALGESHIKTTLDLIEGSITVCTTKKTYDPYAILRARGLIKLLAR 86
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
SVP QA++IL D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++V
Sbjct: 87 SVPFEQAVRILQDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMV 146
Query: 178 Q----------------------------------ILMVKKELEKDPALANENWDRFLPK 203
Q LM+K+EL KDP L ++W+RFLPK
Sbjct: 147 QGNTVSALGPFNGLKEVRKVVMDTMRNIHPIYNIKTLMIKQELSKDPDLRMQSWERFLPK 206
Query: 204 FKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 261
F+ KN+ +++ K KK YTPFPP S +DK L +GE+FL E K+ KK +E + K
Sbjct: 207 FRHKNLAKRREPKKKSTKKEYTPFPPSQPESTVDKELATGEFFLRESVKKRKKMEEIKVK 266
Query: 262 QAEKTAENKRKRDAAFIPPEEP---SRQNSCEAEDKTNDVAAMAKSLKEKAKKL 312
QAE + + +R+ AFIPP+E + N E K + A K K K KKL
Sbjct: 267 QAEALTKKQEERNKAFIPPKEKPLMKKTNKAPTEGKLDIEAIKEKVRKAKTKKL 320
>gi|321262677|ref|XP_003196057.1| rRNA processing-related protein [Cryptococcus gattii WM276]
gi|317462532|gb|ADV24270.1| rRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 404
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 155/231 (67%), Gaps = 37/231 (16%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHW +++F E LE SSF+ LFP+YRE YL+ W +
Sbjct: 26 RHRKDKPWDTD-DIDHWAMDEFKAPNPEAHKPFLEESSFALLFPKYREPYLRSVWSSITS 84
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL+ YG++CEL+LV+G M V TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D +
Sbjct: 85 ALEAYGLACELDLVQGKMIVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILEDGIA 144
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------- 179
CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQ
Sbjct: 145 CDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKGLKE 204
Query: 180 --------------------LMVKKELEKDPALANENWDRFLPKFKKKNVK 210
LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 205 VRRIILDCMNNIHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 324 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEVAQERRAVREEAFVAPP 383
Query: 282 E 282
E
Sbjct: 384 E 384
>gi|68531923|ref|XP_723647.1| RNA-binding protein [Plasmodium yoelii yoelii 17XNL]
gi|23478009|gb|EAA15212.1| RNA-binding protein [Plasmodium yoelii yoelii]
Length = 301
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 175/278 (62%), Gaps = 41/278 (14%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ VNK ++ K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKYLQ
Sbjct: 7 EENVNKN--KRYRKEKPWDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQ 63
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ +K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A
Sbjct: 64 QFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 123
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------ 179
++L+DE+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V
Sbjct: 124 RVLNDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVI 183
Query: 180 ----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ 211
L+ K+ELEK+ L NENW+++LP FKK+NV++
Sbjct: 184 GNFKSLKIVRRIVIDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQR 243
Query: 212 KKVK----SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
KK+K +K K + FPP P KID +E+GEYF+
Sbjct: 244 KKIKQKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFI 281
>gi|313246422|emb|CBY35332.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 189/309 (61%), Gaps = 35/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E+F P N G LE S FSTLFP+YREKYL+E WP+V+ L Y + CEL+L+EG
Sbjct: 15 DGWKPEEFKPEHNPNGCLEESKFSTLFPKYREKYLKEVWPLVEKFLTPYFLKCELDLIEG 74
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K DDE +++KI LVRN ERF
Sbjct: 75 SMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFDDENAVEVVKIKGLVRNLERF 134
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------ 179
KRRQ L+GP TLK +E LTGCYI VQ
Sbjct: 135 AKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHRGLKECRKIVVDTMNNKHPAH 194
Query: 180 ----LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 235
LM+K+E K+PAL NENW RFLPK+K K VK++K KEKK YTPFPP P SKID
Sbjct: 195 NIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKKDIKEKKEYTPFPPAPVSSKID 254
Query: 236 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF-IPPEEPSRQNSCEAEDK 294
K LESGEYF+ +++ KK Q K EKQ E +KR A+F P E+ ++N E +
Sbjct: 255 KELESGEYFIKANEQKKKKKQLKAEKQEAANEERSKKRAASFQAPKEKQVKKNDSEVREA 314
Query: 295 TNDVAAMAK 303
MAK
Sbjct: 315 PKKKKKMAK 323
>gi|313229458|emb|CBY18272.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 190/309 (61%), Gaps = 35/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E+F P N G LE S FSTLFP+YREKYL+E WP+V+ L Y + CEL+L+EG
Sbjct: 15 DGWKPEEFKPEHNPNGCLEESKFSTLFPKYREKYLKEVWPLVEKFLTPYFLKCELDLIEG 74
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K DDE +++KI LVRN ERF
Sbjct: 75 SMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFDDENAVEVVKIKGLVRNLERF 134
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------ 179
KRRQ L+GP TLK +E LTGCYI VQ
Sbjct: 135 AKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHRGLKECRKIVVDTMNNKHPAH 194
Query: 180 ----LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 235
LM+K+E K+PAL NENW RFLPK+K K VK++K KEKK YTPFPP P SKID
Sbjct: 195 NIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKKDIKEKKEYTPFPPAPVSSKID 254
Query: 236 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF-IPPEEPSRQNSCEAEDK 294
K LESGEYF+ ++++ KK Q K EKQ E +KR A+F P E+ ++N E +
Sbjct: 255 KELESGEYFIKAKEQKKKKKQLKAEKQEAANEERSKKRAASFQAPKEKQVKKNDSEVREA 314
Query: 295 TNDVAAMAK 303
MAK
Sbjct: 315 PKKKKKMAK 323
>gi|66813724|ref|XP_641041.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
gi|74855697|sp|Q54UU6.1|KRR1_DICDI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|60469063|gb|EAL67060.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
Length = 374
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 176/276 (63%), Gaps = 36/276 (13%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+ + SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L+EGSMTV+TT+K DP I
Sbjct: 54 LYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAI 113
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLK
Sbjct: 114 LKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLK 173
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
A+E+LT CY+LVQ LM+K+ELEKD
Sbjct: 174 AIELLTKCYVLVQGNTVSSIGPWNGLVQVRKIVEDCLKNIHPIYNIKELMIKRELEKDET 233
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERK 249
L NENW+R+LP+FKK N +KK K+K + PF PP P K D +ESGEYF SE K
Sbjct: 234 LKNENWERYLPQFKKTNQNKKKKVQKKKKDRDAAPFAPPQLPRKEDLAMESGEYFASEEK 293
Query: 250 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
K K +++ K AE + K +R + I P E R
Sbjct: 294 KRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDR 329
>gi|340378663|ref|XP_003387847.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Amphimedon
queenslandica]
Length = 269
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 153/215 (71%), Gaps = 35/215 (16%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD D +IDHW +E+F P N +L+ SSF+TLFP+YREKYLQ+ WP+V+ L ++G+
Sbjct: 23 PWDND-SIDHWTIEEFKPEHNPHSLLDESSFATLFPKYREKYLQKVWPLVQKCLNDHGIK 81
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
+L+L+EGSMTVSTTRKT DPYIIVKARD+I+LL+RSVP QAIKILDD+ CDIIKI +
Sbjct: 82 SQLDLIEGSMTVSTTRKTFDPYIIVKARDMIKLLARSVPYEQAIKILDDDKACDIIKIRS 141
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LVRNK+RFV+RRQ L+GP+ +TLKA+E+LT CYI+VQ
Sbjct: 142 LVRNKDRFVRRRQRLIGPDGATLKAIELLTQCYIMVQGATVSAIGPFTGLKQLRRVVEDT 201
Query: 179 -----------ILMVKKELEKDPALANENWDRFLP 202
+M+K+EL KDP+L NE+WDRFLP
Sbjct: 202 MKNIHPVYHIKTMMIKRELMKDPSLKNESWDRFLP 236
>gi|440462064|gb|ELQ32475.1| hypothetical protein OOU_Y34scaffold01139g1, partial [Magnaporthe
oryzae Y34]
Length = 251
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/210 (58%), Positives = 150/210 (71%), Gaps = 34/210 (16%)
Query: 34 VEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTV 93
V KF P +G LE SSF+TLFP+YRE+YL+E W V AL ++G++C L+LVEGSMTV
Sbjct: 2 VPKFTPDEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSALDKHGIACTLDLVEGSMTV 61
Query: 94 STTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRR 153
TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD+IKIGNL+RNKERFVKRR
Sbjct: 62 KTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILEDGIECDVIKIGNLLRNKERFVKRR 121
Query: 154 QHLVGPNSSTLKALEILTGCYILVQI---------------------------------- 179
Q ++GPN STLKA+E+LTGCY+LVQ
Sbjct: 122 QRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKSLKEVRRIVIDCLKNVHPIYHIKE 181
Query: 180 LMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL KDP LA ENW+RFLPKFKK+N+
Sbjct: 182 LMIKRELAKDPKLAEENWERFLPKFKKRNM 211
>gi|443689552|gb|ELT91925.1| hypothetical protein CAPTEDRAFT_183647 [Capitella teleta]
Length = 330
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/294 (45%), Positives = 191/294 (64%), Gaps = 38/294 (12%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
M + SSF+TLFP+Y+EKY++E WP+V+ LK + + +L++VEGSM+V TTR+T DPYII
Sbjct: 1 MADESSFATLFPKYQEKYIKECWPLVQEKLKSFNIKADLDVVEGSMSVKTTRQTWDPYII 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
++ARDLI+LLSRSVP +A+++LDD++ C+II I N+V KER+VKRRQ L+GPN STLK
Sbjct: 61 IRARDLIKLLSRSVPYDKAVRVLDDDVACEIISIKNMVSPKERYVKRRQRLIGPNGSTLK 120
Query: 166 ALEILTGCYILVQ----------------------------------ILMVKKELEKDPA 191
A+E+LT CY+ VQ M+K ELEKDP
Sbjct: 121 AIELLTSCYVTVQGSTVAAIGKYSGLKFVRSIVTDCMKNVHPIYNIKCAMIKNELEKDPE 180
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKP----YTPFPPPPQPSKIDKLLESGEYFLSE 247
L ++W+RFLPKFKK+NV KK K++K YTPFPPP SK+DK L SGE+FL+E
Sbjct: 181 LNKDSWERFLPKFKKQNVSNKKKAKKKEKSKKKEYTPFPPPMPESKVDKELASGEFFLTE 240
Query: 248 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAM 301
++K+ KK E++ + + K + ++IPP+E + +D T D+ ++
Sbjct: 241 KQKKKKKEDERKTNETSHRKTHAEKHEKSYIPPKETDGKKKKVKKDDTIDIDSL 294
>gi|339234355|ref|XP_003382294.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978714|gb|EFV61660.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 276
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/251 (50%), Positives = 165/251 (65%), Gaps = 33/251 (13%)
Query: 25 EDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCEL 84
E NI WK+ F N G+L S+F+TLFP+YREKYL+E +P+++ AL E+G+ E+
Sbjct: 9 ESSNI--WKIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEM 66
Query: 85 NLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR 144
+ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+D+ CDIIKI LVR
Sbjct: 67 DALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILEDDTACDIIKISGLVR 126
Query: 145 NKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------- 178
N+ RFVKRRQ L+GPN TLKA+E+LT CY+++Q
Sbjct: 127 NRVRFVKRRQRLIGPNGCTLKAIELLTNCYVMIQGNTVSAVGPYSGLRDVRKIVEDCMNN 186
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 235
LM+KKEL KDP LA ENWDRFLPKF+KK QKK SK + P K+D
Sbjct: 187 IHPTLMLKKELMKDPKLATENWDRFLPKFRKKLTSQKKKSSKRVE--HPKQTVNAQCKLD 244
Query: 236 KLLESGEYFLS 246
+ LE+GEYFL+
Sbjct: 245 QQLETGEYFLN 255
>gi|68069899|ref|XP_676861.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56496746|emb|CAH98323.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 291
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 175/279 (62%), Gaps = 42/279 (15%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ VNK + + DKP WD + NIDHWK+EKF N+ LE SSF LFP+YRE YLQ
Sbjct: 7 EENVNKNKRYRKDKP--WDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYRE-YLQ 62
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ +K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A
Sbjct: 63 QFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 122
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------ 179
++LDDE+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V
Sbjct: 123 RVLDDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVI 182
Query: 180 ----------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ 211
L+ K+ELEK+ L NENW+++LP FKK+NV++
Sbjct: 183 GNFKSLKIVRRIVIDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQR 242
Query: 212 KKVK----SKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 246
KK+K +K K + FPP P KID +E+GEYF++
Sbjct: 243 KKIKQKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFMN 281
>gi|195350218|ref|XP_002041638.1| GM16638 [Drosophila sechellia]
gi|194123411|gb|EDW45454.1| GM16638 [Drosophila sechellia]
Length = 314
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 188/285 (65%), Gaps = 17/285 (5%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVRTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV---G 158
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV +RR++ V G
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVH------RRRRNTVSALG 145
Query: 159 PNSSTLK----ALEILTGCYILVQI--LMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
P + LE + + + I LM+K+EL KDP LANE+W RFLPKFK KN+ ++
Sbjct: 146 PYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKR 205
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K +K+ YTPFPP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +
Sbjct: 206 KQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEASKRQD 265
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 315
+R+ F+PP E S +S + ED + K+LK K K K+
Sbjct: 266 ERRNKDFVPPTEESAASSRKKEDGSTSNKVDVKALKAKLIKANKK 310
>gi|268558824|ref|XP_002637403.1| Hypothetical protein CBG19110 [Caenorhabditis briggsae]
gi|268558832|ref|XP_002637407.1| Hypothetical protein CBG19114 [Caenorhabditis briggsae]
Length = 371
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 194/310 (62%), Gaps = 45/310 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 45 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHHLKADLDLLEGTM 104
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++++LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 105 CVRTTRKTWDPYIIMKAREVLKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 164
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 165 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVTDCMKNIHPIYNI 224
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD +LPK++KK K+K K K K YTPFPP
Sbjct: 225 KSMMIKRELAKNDELKDTNWDPYLPKYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPPA 284
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNS 288
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 285 PVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPREK- 343
Query: 289 CEAEDKTNDV 298
+ + + NDV
Sbjct: 344 -QTKKRANDV 352
>gi|341902510|gb|EGT58445.1| hypothetical protein CAEBREN_10565 [Caenorhabditis brenneri]
Length = 368
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/298 (44%), Positives = 189/298 (63%), Gaps = 43/298 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHPIYNI 222
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD +LPK++KK K+K K K KK YTP+PP
Sbjct: 223 KTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMKPKKEYTPYPPA 282
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 283 PVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|341883487|gb|EGT39422.1| hypothetical protein CAEBREN_11963 [Caenorhabditis brenneri]
Length = 368
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/298 (44%), Positives = 189/298 (63%), Gaps = 43/298 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHPIYNI 222
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD +LPK++KK K+K K K KK YTP+PP
Sbjct: 223 KTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMKPKKEYTPYPPA 282
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 283 PVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|308450342|ref|XP_003088263.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
gi|308248562|gb|EFO92514.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
Length = 368
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 188/298 (63%), Gaps = 43/298 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVSDCMKNIHPIYNI 222
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD++LP ++KK K+K K K K YTPFPP
Sbjct: 223 KTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPPA 282
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 283 PVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|308470857|ref|XP_003097661.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
gi|308239962|gb|EFO83914.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
Length = 368
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 188/298 (63%), Gaps = 43/298 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVSDCMKNIHPIYNI 222
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD++LP ++KK K+K K K K YTPFPP
Sbjct: 223 KTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPPA 282
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 283 PVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|17557644|ref|NP_504837.1| Protein C05C8.2 [Caenorhabditis elegans]
gi|351021075|emb|CCD63088.1| Protein C05C8.2 [Caenorhabditis elegans]
Length = 370
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/298 (44%), Positives = 188/298 (63%), Gaps = 43/298 (14%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 45 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 104
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 105 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 164
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G + +TLKALE+LT CY+ VQ
Sbjct: 165 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHPIYNI 224
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPPP 228
+M+K+EL K+ L + NWD +LP ++KK K+K K K KK +TPFPP
Sbjct: 225 KTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMKPKKEFTPFPPA 284
Query: 229 PQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 286
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 285 PVMSKIDKQIESGEYFIRENERKMNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 342
>gi|355698774|gb|AES00908.1| KRR1, small subunit processome component,-like protein [Mustela
putorius furo]
Length = 274
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 172/269 (63%), Gaps = 42/269 (15%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQ 58
N + + K + + KPKP + D + D WK F N G+LE SSF+TLFP+
Sbjct: 4 NGQAIADGKSEFRKKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPK 63
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YRE YL+E WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RS
Sbjct: 64 YREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARS 123
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
V QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 124 VSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ 183
Query: 179 ----------------------------------ILMVKKELEKDPALANENWDRFLPKF 204
LM+K+EL KD L +++W+RFLP+F
Sbjct: 184 GNTVSVIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWERFLPQF 243
Query: 205 KKKNVKQKKVKSKEKKP--YTPFPPPPQP 231
K KNV ++K K+ YTPF PPPQP
Sbjct: 244 KHKNVNKRKEPKKKTVKKEYTPF-PPPQP 271
>gi|2208950|emb|CAB09659.1| dribble [Drosophila melanogaster]
Length = 327
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 161/237 (67%), Gaps = 36/237 (15%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLK++E+LT CY+LVQ LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELM 211
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGE 242
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SG+
Sbjct: 212 KDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGD 268
>gi|402594910|gb|EJW88836.1| dribble protein [Wuchereria bancrofti]
Length = 315
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 190/315 (60%), Gaps = 64/315 (20%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+++ +E+ + +L+++EG+M
Sbjct: 27 WDISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLLQKVFEEHFLKADLDVLEGTM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQDDTASEIIKISSMVTNKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RR L+G +TLKA+E+LT CYI+VQ
Sbjct: 147 RRARLIGNEGATLKAVELLTKCYIMVQGSTVAAVGPYEGLKHVRMIVEDCMNNIHPIYNI 206
Query: 179 -ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKL 237
LM+K+EL KD L NENWDRFLPKFKK KIDK
Sbjct: 207 KTLMIKRELMKDENLKNENWDRFLPKFKK--------------------------KIDKQ 240
Query: 238 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR-QNSCEAEDKTN 296
LESGEYFLSE+ ++ +K EK+ KQ EK AE K++R + ++PP+ R +NS + +TN
Sbjct: 241 LESGEYFLSEKTRQMEKRNEKRTKQMEKIAERKKQRASEYVPPDGKIRPKNSYK---RTN 297
Query: 297 DVAAMAKSLKEKAKK 311
+V ++LK+K +K
Sbjct: 298 EVPIDIENLKKKVRK 312
>gi|255729762|ref|XP_002549806.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
gi|240132875|gb|EER32432.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
Length = 233
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 153/227 (67%), Gaps = 37/227 (16%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNTSGLHFAEESSFMTLFPKYREQYLRGIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ + CELNLVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LEKHFIKCELNLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKK 207
LM+K+EL K+P LANE+W RFLP FKK+
Sbjct: 184 RRVVEDCMKNIHPIYYIKELMIKQELSKNPDLANEDWSRFLPSFKKR 230
>gi|397526020|ref|XP_003832939.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Pan paniscus]
Length = 324
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 185/296 (62%), Gaps = 27/296 (9%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKEL 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ-------- 186
Query: 187 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 246
N + F +K V K + P KIDK L SGEYFL
Sbjct: 187 --------GNTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLK 233
Query: 247 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+K+ +K + + KQAE ++ + +R+ AFIPP+E EA +T DVA++
Sbjct: 234 ANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASTETKIDVASI 289
>gi|395744608|ref|XP_003778133.1| PREDICTED: KRR1 small subunit processome component homolog [Pongo
abelii]
Length = 324
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 185/296 (62%), Gaps = 27/296 (9%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKEL 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ-------- 186
Query: 187 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 246
N + F +K V K + P KIDK L SGEYFL
Sbjct: 187 --------GNTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLK 233
Query: 247 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+K+ +K + + KQAE ++ + +R+ AFIPP+E EA +T DVA++
Sbjct: 234 ANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASAETKIDVASI 289
>gi|403271962|ref|XP_003927865.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Saimiri boliviensis boliviensis]
Length = 331
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 170/267 (63%), Gaps = 24/267 (8%)
Query: 19 KPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KP+ DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL
Sbjct: 24 KPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKAL 83
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CD
Sbjct: 84 NEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQDDVACD 143
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANE 195
IIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 144 IIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ----------------G 187
Query: 196 NWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 255
N + F +K V K + P KIDK L SGEYFL +K+ +K
Sbjct: 188 NTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLKANQKKRQKM 242
Query: 256 QEKQEKQAEKTAENKRKRDAAFIPPEE 282
+ + KQAE ++ + +R+ AFIPP+E
Sbjct: 243 EAIKAKQAEAVSKRQEERNKAFIPPKE 269
>gi|221053157|ref|XP_002257953.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193807785|emb|CAQ38490.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 298
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/283 (46%), Positives = 170/283 (60%), Gaps = 44/283 (15%)
Query: 6 EKTVNKKHKGK--HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
E + NK GK + K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKY
Sbjct: 5 EASHNKGQAGKRKYRKEKPWDNE-NIDHWKIEKFTREDNKNHFLEESSFKVLFPKYREKY 63
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
LQ+ +K L + + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP
Sbjct: 64 LQQFSTDIKNVLNNHFIKFEINLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFSH 123
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---- 179
A ++LDDE CDIIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V
Sbjct: 124 AKRVLDDETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVS 183
Query: 180 ------------------------------LMVKKELEKDPALANENWDRFLPKFKKKNV 209
L+ K+EL+K+ NENW++FLP FKK+NV
Sbjct: 184 VIGYFKALKVVRRIIVDCMKNIHPVYHIKELIAKRELQKNEEFKNENWEKFLPNFKKRNV 243
Query: 210 KQ-------KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
++ +K K +K+ + FPP P KID +E+GEYF+
Sbjct: 244 QRKKIKQKLEKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|410965128|ref|XP_003989104.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Felis catus]
Length = 324
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/276 (48%), Positives = 175/276 (63%), Gaps = 26/276 (9%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKEL 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ-------- 186
Query: 187 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 246
N + F +K V K + P KIDK L SGEYFL
Sbjct: 187 --------GNTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLK 233
Query: 247 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 234 ASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 269
>gi|335288274|ref|XP_003355571.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Sus scrofa]
Length = 318
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 180/292 (61%), Gaps = 27/292 (9%)
Query: 16 KHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E WP+
Sbjct: 13 RRQKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPL 72
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D
Sbjct: 73 VQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQD 132
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDP 190
++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 133 DVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ------------ 180
Query: 191 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 250
N + F +K V K + P KIDK L SGEYFL +K
Sbjct: 181 ----GNTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLKSSQK 231
Query: 251 ESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+ +K + + KQAE ++ + +R+ AFIPP+E EA +T DVA +
Sbjct: 232 KRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEASTETKIDVATI 283
>gi|115530772|emb|CAL49409.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Xenopus (Silurana) tropicalis]
Length = 249
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 158/237 (66%), Gaps = 37/237 (15%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 191 PFSGLKEVRKVVWDTMKNIHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 247
>gi|27371283|gb|AAH41273.1| HRB2 protein, partial [Xenopus laevis]
Length = 257
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/214 (54%), Positives = 148/214 (69%), Gaps = 34/214 (15%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + V EL+L+EG
Sbjct: 33 DGWKEEPFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG+LVRN+ERF
Sbjct: 93 SMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
+KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 153 IKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFGGLKEVRKVVSDTMKNIHPIY 212
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNV 209
LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 213 NIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 246
>gi|116292726|gb|ABJ97679.1| HRB2 variant B [Homo sapiens]
Length = 324
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/276 (48%), Positives = 175/276 (63%), Gaps = 26/276 (9%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKEL 186
IL D++ CDIIKIG+LVRNKERFVKR Q LVGP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRGQRLVGPKGSTLKALELLTNCYIMVQ-------- 186
Query: 187 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 246
N + F +K V K + P KIDK L SGEYFL
Sbjct: 187 --------GNTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLK 233
Query: 247 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
+K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 234 ANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKE 269
>gi|326429404|gb|EGD74974.1| hypothetical protein PTSG_07198 [Salpingoeca sp. ATCC 50818]
Length = 318
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/275 (49%), Positives = 179/275 (65%), Gaps = 39/275 (14%)
Query: 16 KHDKPKPWDEDPNIDHW-KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++ K KPWD + IDHW + E ++E SSFSTLFP+YRE+YL+E WP ++
Sbjct: 34 RYRKDKPWDHE-GIDHWANIPYTKDEAGENTLVEESSFSTLFPKYREQYLREWWPHIERE 92
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
LK++ + EL+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP A ++L DE+ C
Sbjct: 93 LKKHHIVAELDLVEGSMTVRTTRKTWDPYIIIKARDVIKLLARSVPFQHAKRVLQDEIAC 152
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ---------------- 178
++IKI N+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQ
Sbjct: 153 EVIKIANIVRNKERFVKRRQRLIGPNGATLKAIELLTDCYMLVQGNTVSCIGPYKGLKQV 212
Query: 179 ------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-EK 219
LM+K+EL K L E+WDRFLPKFKK N K+KK ++ K
Sbjct: 213 RKVVLDCMNNIHPVYNIKTLMIKRELMKREDLKGESWDRFLPKFKKTNQKKKKSNTQIVK 272
Query: 220 KPYTPFPPPPQPSKIDKLLESGEYFL--SERKKES 252
K + PP P K+DK +ESGEYFL S ++K+S
Sbjct: 273 KEPSHLPPEQLPRKVDKEIESGEYFLKPSGKRKQS 307
>gi|1326184|gb|AAB00557.1| Rev interacting protein Rip-1 [Homo sapiens]
Length = 288
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 157/236 (66%), Gaps = 39/236 (16%)
Query: 16 KHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E WP+
Sbjct: 19 RNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPL 78
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D
Sbjct: 79 VQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQD 138
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------ 178
++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 139 DVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSG 198
Query: 179 ----------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 199 LKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
>gi|156093946|ref|XP_001613011.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148801885|gb|EDL43284.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 301
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/271 (46%), Positives = 164/271 (60%), Gaps = 42/271 (15%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+ +K L
Sbjct: 17 KYRKEKPWDNE-NIDHWKVEKFTREDNKHHFLEESSFKVLFPKYREKYLQQFSTDIKNVL 75
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP A ++L+DE CD
Sbjct: 76 NNHFIKFEMNLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFTHAKRVLEDETFCD 135
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V
Sbjct: 136 IIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTSCYICVHGKTVSVIGFFKALKVVR 195
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK-------KV 214
L+ K+EL+K+ NENW+++LP FKK+N +++ K
Sbjct: 196 RIIIDCMKNIHPVYHIKELIAKRELQKNEEFKNENWEKYLPNFKKRNAQRRKIKQKLEKK 255
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
K +K+ + FPP P KID +E+GEYF+
Sbjct: 256 KGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|124801035|ref|XP_001349592.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|3845166|gb|AAC71863.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 300
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 164/262 (62%), Gaps = 39/262 (14%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+ +K L ++ +
Sbjct: 20 PWDNE-NIDHWKVEKFTQEDNKHHFLEESSFKVLFPKYREKYLQQFSSDIKNVLNKHFIK 78
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++L+EG M V TT+KT DPYII+K+RD+I LLSRSVP A ++L+DE CDIIKI
Sbjct: 79 FEIDLIEGYMCVKTTKKTFDPYIIIKSRDMISLLSRSVPFVHAKRVLEDETYCDIIKISG 138
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------------- 179
VRNK +F+KRRQ L+G N++TLKALEILT CYI +
Sbjct: 139 YVRNKNKFIKRRQRLLGSNATTLKALEILTNCYICIHGKTVSVIGHFKSLKVVRRIIIDC 198
Query: 180 ------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ----KKVKSKEKKPYT 223
L+ K+ELEK+ NENW++FLP FKK+NV++ +K+ K+KK +
Sbjct: 199 MKNIHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNVQRKKIKEKLDKKKKKNKS 258
Query: 224 PFPPPPQPSKIDKLLESGEYFL 245
FPP P KID +E+GEYFL
Sbjct: 259 VFPPDQLPRKIDIQMETGEYFL 280
>gi|296212422|ref|XP_002752823.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Callithrix jacchus]
Length = 323
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/287 (47%), Positives = 178/287 (62%), Gaps = 25/287 (8%)
Query: 19 KPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KP DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL
Sbjct: 24 KPDNQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKAL 83
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CD
Sbjct: 84 IEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQDDVACD 143
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANE 195
IIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 144 IIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ----------------G 187
Query: 196 NWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 255
N + F +K V K + P KIDK L SGEYFL +K+ +K
Sbjct: 188 NTVSAIGPFSGLKEVRKVVLDTMKNIH-----PIYNIKIDKELASGEYFLKANQKKRQKM 242
Query: 256 QEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+ + KQAE ++ + +R+ AFIPP+E +A +T DVA++
Sbjct: 243 EAIKAKQAEAISKRQEERNKAFIPPKEKPVVKPKKASTETKIDVASI 289
>gi|70949626|ref|XP_744206.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56524063|emb|CAH77733.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 297
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/268 (47%), Positives = 167/268 (62%), Gaps = 40/268 (14%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKYLQ+ +K L
Sbjct: 15 RYRKDKPWDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQQFSTDIKNTL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A ++L+DE CD
Sbjct: 74 HNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAKRVLEDETFCD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI---------------- 179
IKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V
Sbjct: 134 -IKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVSVIGNFKSLKIVR 192
Query: 180 ------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQ----KKVKSK 217
L+ K+ELEK+ L NENW+++LP FKK+NV++ +K++ K
Sbjct: 193 RIVIDCMKNIHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIKQKLEKK 252
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFL 245
K + FPP P KID +E+GEYF+
Sbjct: 253 NGKKKSIFPPDQLPRKIDIQMETGEYFM 280
>gi|29841357|gb|AAP06389.1| similar to GenBank Accession Number BC016778 HIV-1 rev binding
protein 2 in Homo sapiens [Schistosoma japonicum]
Length = 343
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 176/293 (60%), Gaps = 41/293 (13%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLSEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRR L+G + TLKALE+ T CYI+VQ
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 233
L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYNPFPPAPVPSK 282
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 285
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|189503038|gb|ACE06900.1| unknown [Schistosoma japonicum]
Length = 343
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 176/293 (60%), Gaps = 41/293 (13%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRR L+G + TLKALE+ T CYI+VQ
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 233
L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYNPFPPAPVPSK 282
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 285
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|226466630|emb|CAX69450.1| KRR1, small subunit (SSU) processome component, homolog
[Schistosoma japonicum]
Length = 343
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 176/293 (60%), Gaps = 41/293 (13%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRR L+G + TLKALE+ T CYI+VQ
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 233
L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKIRKKKEYNPFPPAPVPSK 282
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 285
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|281202375|gb|EFA76580.1| hypothetical protein PPL_10349 [Polysphondylium pallidum PN500]
Length = 368
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 195/308 (63%), Gaps = 46/308 (14%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
SSFSTLFP+YREKY++E WP+V+ L E+G+ C+L+L++GSM+V+TT+K DP I+KAR
Sbjct: 57 SSFSTLFPKYREKYIKEIWPLVEKELNEHGIVCKLDLIDGSMSVTTTKKCWDPVAILKAR 116
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
DLIRLLSRSVP A +I+ DE CDIIKIG VRNKERFVKRRQ L+GP+ +TLK++E+
Sbjct: 117 DLIRLLSRSVPFHHAKRIMLDENNCDIIKIGGSVRNKERFVKRRQRLIGPDGATLKSIEL 176
Query: 170 LTGCYILVQI----------------------------------LMVKKELEKDPALANE 195
LT CY+LVQ +M+++EL KD +L E
Sbjct: 177 LTRCYVLVQGTTVASIGPWDGLLQVNKIVEDCMKNIHPIYNIKEMMIRRELMKDESLKTE 236
Query: 196 NWDRFLPKFKKKNVKQKK----------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+WDRF+PKFKK NV+ + ++KK PF P P K D + SGEYFL
Sbjct: 237 SWDRFIPKFKKNNVQSSRDIAKIKQKKKQIKQKKKDTGPFAPAQLPRKEDLEMASGEYFL 296
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSL 305
SE KK KK +E++EKQAE A+ +++R ++ + P E R + + ++ N++ + +SL
Sbjct: 297 SEAKKAEKKKKEREEKQAEAVAKKQQERASSLVAPAEKERPHY--SNNQQNNLPSKEESL 354
Query: 306 KEKAKKLR 313
K+ + L+
Sbjct: 355 KKIQENLK 362
>gi|346975397|gb|EGY18849.1| ribosomal RNA assembly protein mis3 [Verticillium dahliae VdLs.17]
Length = 216
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/200 (58%), Positives = 146/200 (73%), Gaps = 7/200 (3%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD + +ID WKVE F P N GG +E SSFS LFP+YRE YL+EAWP+V +L
Sbjct: 4 HEKDKPWDTE-DIDKWKVETFKPTDNVGGSFVEESSFSVLFPKYREVYLKEAWPLVTKSL 62
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 63 EKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILEDGVACD 122
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVK-----KELEKDP 190
IIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV V K L++
Sbjct: 123 IIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEVR 182
Query: 191 ALANENWDRFLPKFKKKNVK 210
+A + D P + K V+
Sbjct: 183 RIAIQTMDNIHPIYAIKQVR 202
>gi|330801607|ref|XP_003288817.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
gi|325081153|gb|EGC34680.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
Length = 349
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/274 (50%), Positives = 174/274 (63%), Gaps = 40/274 (14%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
SSF+TLFP+YREKYLQE W +V+ LK++G+ C+L+L+EGSMT +TT K DP I+KAR
Sbjct: 53 SSFATLFPKYREKYLQEIWKLVENLLKDHGIECKLDLIEGSMTTTTTSKCWDPVAILKAR 112
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
DLI+LLSRSVP A KI+ D+ C++IKIG VRNKERFVKRRQ LVGP+ STLKA+E+
Sbjct: 113 DLIKLLSRSVPFEHAQKIMLDDYNCEVIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIEL 172
Query: 170 LTGCYILVQI----------------------------------LMVKKELEKDPALANE 195
LT CY+LVQ LM+K+ELEKD +L E
Sbjct: 173 LTKCYVLVQGNTVSCIGPWQGLLQVRKIVEDCMKNIHPIYNIKELMIKRELEKDESLKAE 232
Query: 196 NWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 253
+WD+FLP+FKKKN +KK K+K + PF P K D + SGEYFLSE KK
Sbjct: 233 SWDKFLPQFKKKNQNKKKKVQKKKKDRDAAPFAQDQLPRKEDIAMASGEYFLSEEKKRKL 292
Query: 254 KWQEKQEKQAEKTAENKRK--RDAAFIPPEEPSR 285
K +E++ K E +ENKR+ R I PEE R
Sbjct: 293 KEKEREAKHVE--SENKRQEERMKLSIAPEEKQR 324
>gi|444730114|gb|ELW70509.1| KRR1 small subunit processome component like protein [Tupaia
chinensis]
Length = 283
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/248 (49%), Positives = 158/248 (63%), Gaps = 37/248 (14%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERFV
Sbjct: 1 MTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFNGLKEVRKVVLDTMKNIHPIYN 120
Query: 179 --ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKI 234
LM+K+EL KD L +++W+RFLP FK KNV ++K K+ YTPFPPP S+I
Sbjct: 121 IKTLMIKRELAKDSELRSQSWERFLPHFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQI 180
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDK 294
DK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E S EA
Sbjct: 181 DKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKSVVKPKEASTD 240
Query: 295 TN-DVAAM 301
T DVAA+
Sbjct: 241 TKIDVAAI 248
>gi|323349604|gb|EGA83823.1| Krr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 217
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 127/164 (77%), Gaps = 3/164 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQ 167
>gi|403412462|emb|CCL99162.1| predicted protein [Fibroporia radiculosa]
Length = 294
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 168/294 (57%), Gaps = 62/294 (21%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M+V TTRKT DPYII+KARD+I+LL+R V A QA+KILDD + CDI+KIGNLVRNKERFV
Sbjct: 1 MSVRTTRKTFDPYIILKARDMIKLLARGVAAGQAVKILDDGVACDIVKIGNLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------- 179
KRRQ ++GP+ STLKA+E+LT CY+LVQ
Sbjct: 61 KRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKGLKEVRRIILDCMKNIHPIYR 120
Query: 180 ---LMVKKELEKDPALANENWDRFLPKFKKKNVKQK--------KVKSKE---------- 218
LM+K+EL KDP L NE+WDRFLPKF++ ++K ++K K
Sbjct: 121 IKELMIKRELAKDPQLVNESWDRFLPKFRRHHLKTSEKTERKNDRLKDKNEARKAAGLEP 180
Query: 219 ----------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 268
KK YTPFPPP P K+D LESGEYFL+ +K+ ++ + +++KQ + T E
Sbjct: 181 IGPGSKGQQTKKVYTPFPPPQMPRKVDMQLESGEYFLNSNEKQEREARRRKQKQDQVTEE 240
Query: 269 NKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENIN 322
+ KR AF+ P E + E + D + S + K RK+K E+ N
Sbjct: 241 RQAKRAEAFVAPVEEAAPTVEEKRKRRRDKESDNPSEESAHKTKRKKKRFEDTN 294
>gi|407916980|gb|EKG10307.1| K-like protein [Macrophomina phaseolina MS6]
Length = 262
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 149/230 (64%), Gaps = 38/230 (16%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KILDD CDIIKI NLVRNKERFV
Sbjct: 1 MTVKTTRKTWDPAAILKARDLIKLLARSVPAPQALKILDDGTACDIIKIRNLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------- 179
KRRQ ++GP+ STLKALE+LTGCYILVQ
Sbjct: 61 KRRQRILGPDGSTLKALELLTGCYILVQGNTVAAMGGYKGLKEVRRVVEDCMANIHPIYY 120
Query: 180 ---LMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPS 232
LM+K+EL KDP L NE+WDRFLP FKK++ ++ KV K KK YTPFPPP + S
Sbjct: 121 IKELMIKRELAKDPELVNESWDRFLPNFKKRHTAKRRVPHKVTDKSKKVYTPFPPPQEKS 180
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
K+D +ESGEYFL ++ KE K+ + ++ EK E ++ R F P+E
Sbjct: 181 KVDLQIESGEYFLGKQAKERKEKERREAAMREKMEEKRKARAKEFEAPKE 230
>gi|328870400|gb|EGG18774.1| hypothetical protein DFA_02513 [Dictyostelium fasciculatum]
Length = 389
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 173/273 (63%), Gaps = 44/273 (16%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
SSFST+FP+YREKY++E WP+V+ L E+G+ C+L+ +EG+MTV TT+K DP I+KAR
Sbjct: 62 SSFSTVFPKYREKYIKEIWPLVEKELVEHGIDCKLDFIEGTMTVVTTKKCWDPVAILKAR 121
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
DLI+LLSRSVP A KI++D+ CDIIKIG LVRNKERFVKRRQ L+GP+ +TLK++E+
Sbjct: 122 DLIKLLSRSVPFVHAKKIMEDDNNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKSIEL 181
Query: 170 LTGCYILVQI----------------------------------LMVKKELEKDPALANE 195
LT CY+L+Q LM+++EL K+ AL +E
Sbjct: 182 LTRCYVLIQGTTVASIGPWDGLEKVRKIVEDCMKNIHPIYNIKELMIRRELFKNDALKSE 241
Query: 196 NWDRFLPKFKKKNVKQKKVKSKEK------KPYTPFPPPPQPSKIDKLLESGEYFLSERK 249
+W RF+PKFKK+NV+ K K+K T F P K D +ESGEYF+S+
Sbjct: 242 DWSRFIPKFKKRNVQSKAPAPKKKKNRDAPSASTIF----TPRKEDLEMESGEYFMSKES 297
Query: 250 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
K+ KK E+++KQ E T ++ + +I P E
Sbjct: 298 KDKKKKVEREKKQEEATIRRQQAQAKHYIAPAE 330
>gi|62202255|gb|AAH92872.1| LOC553525 protein, partial [Danio rerio]
Length = 260
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 148/228 (64%), Gaps = 36/228 (15%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERFV
Sbjct: 1 MTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVPDTMKNIHPIYN 120
Query: 179 --ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKI 234
LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SKI
Sbjct: 121 IKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESKI 180
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
DK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 181 DKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 228
>gi|407039095|gb|EKE39456.1| RNA-binding protein, putative [Entamoeba nuttalli P19]
Length = 255
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 153/244 (62%), Gaps = 48/244 (19%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +AIK+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ LVGPN +T KA+EILTGC+IL+Q
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDNIHPIYNI 187
Query: 179 -ILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPYT 223
LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y+
Sbjct: 188 KALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNYS 247
Query: 224 PFPP 227
PFPP
Sbjct: 248 PFPP 251
>gi|67478464|ref|XP_654627.1| RNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56471694|gb|EAL49241.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701660|gb|EMD42436.1| RNA-binding protein, putative [Entamoeba histolytica KU27]
Length = 255
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 153/244 (62%), Gaps = 48/244 (19%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYRESYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +AIK+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ LVGPN +T KA+EILTGC+IL+Q
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDNIHPIYNI 187
Query: 179 -ILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPYT 223
LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y+
Sbjct: 188 KALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNYS 247
Query: 224 PFPP 227
PFPP
Sbjct: 248 PFPP 251
>gi|167379708|ref|XP_001735249.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902848|gb|EDR28568.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 255
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 153/244 (62%), Gaps = 48/244 (19%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +A+K+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAVKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQ--------------------------------- 178
RRQ LVGPN +T KA+EILTGC+IL+Q
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDNIHPIYNI 187
Query: 179 -ILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPYT 223
LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y+
Sbjct: 188 KALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNYS 247
Query: 224 PFPP 227
PFPP
Sbjct: 248 PFPP 251
>gi|432096558|gb|ELK27205.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 273
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
>gi|390371134|dbj|GAB65015.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 283
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 157/286 (54%), Gaps = 59/286 (20%)
Query: 10 NKKHKGK--HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEA 67
NK+ GK + K KPWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+
Sbjct: 9 NKREGGKRKYRKEKPWDNE-NIDHWKVEKFTREDNKNHFLEESSFKVLFPKYREKYLQQF 67
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
+K L + V E+NL+EG M ARD+I LLSRSVP A ++
Sbjct: 68 STDIKNVLNNHFVKFEMNLIEGYMC---------------ARDMISLLSRSVPFSHAKRV 112
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------- 179
LDDE CDIIKI VRNK +F+KRRQ L+G N +TLKALEILT CYI V
Sbjct: 113 LDDETFCDIIKISTYVRNKNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVSVIGY 172
Query: 180 --------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQK- 212
L+ K+ELEK+ NENW++FLP FKK+N +++
Sbjct: 173 FKALKVVRRIIVDCMKNIHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNAQRRK 232
Query: 213 ------KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 252
K K +K+ + FPP P KID +E+GEYF+ E+
Sbjct: 233 IKQKLDKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFMRRTGGEA 278
>gi|335775912|gb|AEH58730.1| KRR1 small subunit processome component-like protein [Equus
caballus]
Length = 220
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 120/149 (80%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL++ WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKDCWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
>gi|339234367|ref|XP_003382300.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978674|gb|EFV61623.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 167
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 120/154 (77%), Gaps = 2/154 (1%)
Query: 25 EDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCEL 84
E NI WK+ F N G+L S+F+TLFP+YREKYL+E +P+++ AL E+G+ E+
Sbjct: 9 ESSNI--WKIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEM 66
Query: 85 NLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR 144
+ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+D+ CDIIKI LVR
Sbjct: 67 DALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILEDDTACDIIKISGLVR 126
Query: 145 NKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
N+ RFVKRRQ L+GPN TLKA+E+LT CYI++Q
Sbjct: 127 NRVRFVKRRQRLIGPNGCTLKAIELLTNCYIMIQ 160
>gi|123455111|ref|XP_001315303.1| ribosomal RNA assembly protein mis3 [Trichomonas vaginalis G3]
gi|121897975|gb|EAY03080.1| ribosomal RNA assembly protein mis3, putative [Trichomonas
vaginalis G3]
Length = 298
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 139/234 (59%), Gaps = 34/234 (14%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 20 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 79
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 80 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 139
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT CYILVQ LMVK++L K+PA
Sbjct: 140 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPA 199
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+ANE+WDR+LPK K +K K + P PQ +++DK +ESGEYFL
Sbjct: 200 MANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVDKQIESGEYFL 253
>gi|311302994|gb|ADP89071.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303000|gb|ADP89074.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303004|gb|ADP89076.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 139/234 (59%), Gaps = 34/234 (14%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT CYILVQ LMVK++L K+PA
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPA 180
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+ANE+WDR+LPK K +K K + P PQ +++DK +ESGEYFL
Sbjct: 181 MANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVDKQIESGEYFL 234
>gi|385305422|gb|EIF49399.1| ribosomal rna assembly protein mis3 [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 130/208 (62%), Gaps = 44/208 (21%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KI+ D++ C+++KI LV NKERF+
Sbjct: 1 MTVKTTRKTYDPVQILNARDLIKLLARSVPFPQAVKIMQDDVACEVVKIDGLVSNKERFI 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQI------------------------------- 179
KRRQ L+GP+ +TLKALE+LT CY+LVQ
Sbjct: 61 KRRQRLIGPSGNTLKALELLTDCYMLVQGSTVSIMGPHQGLKVLRRVIIDCMKNVHPIYH 120
Query: 180 ---LMVKKELEKDPALANENWDRFLPKFKKKNVKQ----------KKVKSKEKKPYTPFP 226
LM+K+EL K P LANE+W RFLP+FKK+ V + K KS EKK YTPFP
Sbjct: 121 IKELMIKRELAKRPDLANEDWSRFLPQFKKRAVARRIPKQVKDAKKNGKSTEKKVYTPFP 180
Query: 227 PPPQPSKIDKLLESGEYFLSERKKESKK 254
P P KID +ESGEYFL+ +K+ KK
Sbjct: 181 PAQTPRKIDLZIESGEYFLNNNQKKLKK 208
>gi|311302998|gb|ADP89073.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 34/234 (14%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT CYILVQ LMVK++L K+PA
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPA 180
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 181 MANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|311302996|gb|ADP89072.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 34/234 (14%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT CYILVQ LMVK++L K+PA
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNICGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPA 180
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 181 MANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|311303002|gb|ADP89075.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 139/234 (59%), Gaps = 34/234 (14%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT CYIL+Q LMVK++L K+PA
Sbjct: 121 ALELLTQCYILIQGHTVSIIGNIRGINDASKVVVDCMNNIHPVYHIKRLMVKRDLMKNPA 180
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 245
+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 181 MANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|194387246|dbj|BAG59987.1| unnamed protein product [Homo sapiens]
Length = 177
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 120/161 (74%), Gaps = 5/161 (3%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVQ 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLK
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKVF 175
>gi|291000911|ref|XP_002683022.1| predicted protein [Naegleria gruberi]
gi|284096651|gb|EFC50278.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 168/280 (60%), Gaps = 39/280 (13%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE--YGVSCELNLVEGSMTVSTTRKT 99
N G+ + S F LFP+YRE+YL+E + +++ L + + LN EG + + TT +T
Sbjct: 12 NPNGLADRSDFVILFPEYREQYLKEHFTVIESTLGASPFYLKTTLNCKEGKIIIETTERT 71
Query: 100 RDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP+II K RD ++L+SR V +A ++L+D + +++KIGNL RNKE F KRRQ L GP
Sbjct: 72 FDPFIIFKGRDCLQLVSRGVAFEEAKRVLEDNVFSEVMKIGNLCRNKEVFTKRRQRLFGP 131
Query: 160 NSSTLKALEILTGCYILVQI----------------------------------LMVKKE 185
+ STLKAL++LTGC+I +Q LMVKKE
Sbjct: 132 DGSTLKALQLLTGCFIFIQGKTVSVIGEVNGIKLVSEVITDCMNNIHPIYHIKQLMVKKE 191
Query: 186 LEKDPALANENWDRFLPKFKK---KNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGE 242
L+ AN +WD++LPKFKK K++ +KK K +KK YTPFP P+ SK D +E+GE
Sbjct: 192 LKNSSEYANVSWDKYLPKFKKTVNKSIVKKKKKKIQKKEYTPFPNAPEKSKKDIEIETGE 251
Query: 243 YFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
YFLS+ +K+ K+ E+ EKQ EK E K+++D + P+E
Sbjct: 252 YFLSKEEKQLKQVSERTEKQKEKKEEKKKQQDKLYEAPKE 291
>gi|72390515|ref|XP_845552.1| ribosomal RNA assembly protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358823|gb|AAX79276.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei]
gi|70802087|gb|AAZ11993.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 325
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 143/261 (54%), Gaps = 51/261 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 59 GGACCVAETTFATQFPSYLESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWD 118
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RF+KRR L+GP +
Sbjct: 119 PYAIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKA 178
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 179 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNNIHPIYGLKQLLIKRELA 238
Query: 188 KDPALANENWDRFLPKFKK---------------KNVKQKKVKSKEKKPYTPFPPPPQPS 232
K L +E+W RF+P +KK K Q +K + K + FPP P
Sbjct: 239 KREDLKHEDWSRFIPVYKKTLQNKEKAKAVKKAKKEKLQASLKKQANKEKSVFPPAPPKR 298
Query: 233 KIDKLLESGEYFLSERKKESK 253
K D +ESG+ FL +K+ +
Sbjct: 299 KEDIAMESGKAFLVGQKRRKR 319
>gi|71650197|ref|XP_813801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878720|gb|EAN91950.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|407851896|gb|EKG05594.1| hypothetical protein TCSYLVIO_003331 [Trypanosoma cruzi]
Length = 292
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 144/268 (53%), Gaps = 60/268 (22%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNNIHPIYGLKQLLIKRELA 201
Query: 188 KDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPPP 229
K L +E+W RF+P +KK V KK KEK + FPP P
Sbjct: 202 KREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPAP 258
Query: 230 QPSKIDKLLESGEYFL---SERKKESKK 254
K D +ESG FL +R+++ K+
Sbjct: 259 PKRKEDIAMESGRAFLLRPQQRRQQPKR 286
>gi|407416655|gb|EKF37751.1| hypothetical protein MOQ_002048 [Trypanosoma cruzi marinkellei]
Length = 292
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 145/268 (54%), Gaps = 60/268 (22%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNNIHPIYGLKQLLIKRELA 201
Query: 188 KDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPPP 229
K L +E+W RF+P +KK V KK KEK + FPP P
Sbjct: 202 KREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPAP 258
Query: 230 QPSKIDKLLESGEYFL---SERKKESKK 254
K D +ESG+ FL +R+++ K+
Sbjct: 259 PKRKEDIAMESGKAFLLRPQQRRQQPKR 286
>gi|71422464|ref|XP_812143.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876887|gb|EAN90292.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 292
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 138/256 (53%), Gaps = 57/256 (22%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNNIHPIYGLKQLLIKRELA 201
Query: 188 KDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPPP 229
K L +E+W RF+P +KK V KK KEK + FPP P
Sbjct: 202 KREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPAP 258
Query: 230 QPSKIDKLLESGEYFL 245
K D +ESG+ FL
Sbjct: 259 PKRKEDLAMESGKAFL 274
>gi|261328960|emb|CBH11938.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 287
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 143/261 (54%), Gaps = 51/261 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 21 GGACCVAETTFATQFPSYLESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWD 80
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RF+KRR L+GP +
Sbjct: 81 PYAIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKA 140
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 141 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNNIHPIYGLKQLLIKRELA 200
Query: 188 KDPALANENWDRFLPKFKK---------------KNVKQKKVKSKEKKPYTPFPPPPQPS 232
K L +E+W RF+P +KK K Q +K + K + FPP P
Sbjct: 201 KREDLKHEDWSRFIPVYKKTLQNKEKAKAVKKAKKEKLQASLKKQANKEKSVFPPAPPKR 260
Query: 233 KIDKLLESGEYFLSERKKESK 253
K D +ESG+ FL +K+ +
Sbjct: 261 KEDIAMESGKAFLVGQKRRKR 281
>gi|154341947|ref|XP_001566925.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064250|emb|CAM40449.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 146/267 (54%), Gaps = 51/267 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L+++ + L+L+EGSM V+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLEQHQLVGRLDLMEGSMAVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IV ARD I+LL+R+VP QA KI ++ CDII IG + RFVKRR L+GP +
Sbjct: 83 PYAIVDARDFIKLLARNVPLAQAQKIFQTDITCDIINIGVKGGSVRRFVKRRDRLIGPKA 142
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNNIHPIYGLKQLLIKRELS 202
Query: 188 KDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQPS 232
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 203 KREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKDLKHKQAGKVKTIFPPAPPKR 262
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQ 259
D +ESG+ FL+ R++ K+ E Q
Sbjct: 263 LEDIAMESGQAFLAPRQRRPKEELELQ 289
>gi|308158862|gb|EFO61423.1| KRR1 [Giardia lamblia P15]
Length = 328
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 145/271 (53%), Gaps = 56/271 (20%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQ
Sbjct: 137 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTNTKIQVQGNTVAVMGASRGVG 196
Query: 179 ---------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 213
LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 244
K K +K SK+D+ L SGEYF
Sbjct: 257 AKRKREKQEAAI------SKVDQQLASGEYF 281
>gi|157872762|ref|XP_001684909.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127979|emb|CAJ06702.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 321
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 145/267 (54%), Gaps = 51/267 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNNIHPIYGLKQLLIKRELS 202
Query: 188 KDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQPS 232
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 203 KREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKESKRKQAGKEKTIFPPAPPKR 262
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQ 259
D +ESG+ FL+ R++ K E Q
Sbjct: 263 LEDIAMESGQAFLAPRQRRRKDELELQ 289
>gi|159112012|ref|XP_001706236.1| KRR1 [Giardia lamblia ATCC 50803]
gi|157434330|gb|EDO78562.1| KRR1 [Giardia lamblia ATCC 50803]
Length = 328
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 145/271 (53%), Gaps = 56/271 (20%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQ
Sbjct: 137 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 196
Query: 179 ---------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 213
LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 244
K K +K SK+D+ L SGEYF
Sbjct: 257 AKRKREKQEAAI------SKVDQQLASGEYF 281
>gi|401425923|ref|XP_003877446.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493691|emb|CBZ28981.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 321
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 145/267 (54%), Gaps = 51/267 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLETYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQADITCDIINISVKGGSVRRFVKRRDRLIGPKA 142
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNNIHPIYGLKQLLIKRELA 202
Query: 188 KDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQPS 232
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 203 KREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKESKRKQAGKEKTIFPPAPPRR 262
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQ 259
D +ESG+ FL+ R++ K E Q
Sbjct: 263 LEDIAMESGQAFLAPRQRRHKDELELQ 289
>gi|146094080|ref|XP_001467151.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071515|emb|CAM70204.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 321
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 151/283 (53%), Gaps = 51/283 (18%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNNIHPIYGLKQLLIKRELS 202
Query: 188 KDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQPS 232
K + +E+W RF+P +KK KQK V+ +K K + FPP P
Sbjct: 203 KREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKEAKRKQAGKEKSIFPPAPPKR 262
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 275
D +ESG+ FL+ R++ E Q + + + R R++
Sbjct: 263 LEDIAMESGQAFLAPRQRRHTDELELQSATSPSPSASARTRNS 305
>gi|22901766|gb|AAN10062.1| KRR1 [Giardia intestinalis]
Length = 305
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 145/271 (53%), Gaps = 56/271 (20%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 3 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 53
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 54 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 113
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQ
Sbjct: 114 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 173
Query: 179 ---------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 213
LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 174 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 233
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 244
K K +K SK+D+ L SGEYF
Sbjct: 234 AKRKREKQEAAI------SKVDQQLASGEYF 258
>gi|340054290|emb|CCC48586.1| putative ribosomal RNA assembly protein [Trypanosoma vivax Y486]
Length = 284
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/264 (39%), Positives = 142/264 (53%), Gaps = 57/264 (21%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 20 GGACCVAETTFATRFPSYLESYIRSVWPAVEAVLAQHQLTGQLDLLEGSMTVATTRRTWD 79
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY +VKARD IRLL+R+VP QA KI E+ CDII I ++ F+KRR LVGP +
Sbjct: 80 PYAVVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRCFIKRRDRLVGPKA 139
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 140 QTLKALEILTGCYVLVQGKTVSVMGPVKGCQQVRKIVDDCMNNIHPVYGLQQLLIKRELS 199
Query: 188 KDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPPP 229
K L +E+W RF+P +KK +K KEK + FPP P
Sbjct: 200 KREDLKHEDWSRFIPVYKKTVQTKEKAKAVRKAKKERLRASLEKQAGKEK---SIFPPAP 256
Query: 230 QPSKIDKLLESGEYFLSERKKESK 253
K D +ESGE FL +++ + +
Sbjct: 257 PKRKEDLAMESGEAFLVKKRHQKR 280
>gi|253744746|gb|EET00901.1| KRR1 [Giardia intestinalis ATCC 50581]
Length = 328
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 145/271 (53%), Gaps = 56/271 (20%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWSDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQ
Sbjct: 137 DCDIIRIKNMTPRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 196
Query: 179 ---------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 213
LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 244
K K +K SKID+ L SGEYF
Sbjct: 257 AKRKCEKQEAAI------SKIDQQLASGEYF 281
>gi|398019704|ref|XP_003863016.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501247|emb|CBZ36326.1| hypothetical protein, conserved [Leishmania donovani]
Length = 321
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 142/258 (55%), Gaps = 51/258 (19%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQI----------------------------------LMVKKELE 187
TLKALEILTGCY+LVQ L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNNIHPIYGLKQLLIKRELS 202
Query: 188 KDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQPS 232
K + +E+W RF+P +KK KQK V+ +K K + FPP P
Sbjct: 203 KREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKEAKRKQAGKEKSIFPPAPPKR 262
Query: 233 KIDKLLESGEYFLSERKK 250
D +ESG+ FL+ R++
Sbjct: 263 LEDIAMESGQAFLAPRQR 280
>gi|387597248|gb|EIJ94868.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm1]
Length = 294
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 149/259 (57%), Gaps = 37/259 (14%)
Query: 38 DPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
+PF +G LE SSF +FP++REKY++E ++ AL + ++ ++ E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
T TRDPY+I++ RD ++L+SR VP +AI++ +D + DII I RNKE F+KRR+
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 156 LVGPNSSTLKALEILTGCYIL----------------------------------VQILM 181
L+GP +T+K+LE+LT CYIL ++ LM
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKSLKEVRNVVTKCMENIHPIYEIKKLM 211
Query: 182 VKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESG 241
+++ELEKDPAL ENW+R++P++KK + K++KV EK FP P Q K DK + SG
Sbjct: 212 IRRELEKDPALKTENWERYMPQYKKTHSKKRKVTIVEKTYRNTFPEPEQ-RKQDKEMMSG 270
Query: 242 EYFLSERKKESKKWQEKQE 260
Y +R K++ K+E
Sbjct: 271 TYVHKDRPKKNSSPNTKKE 289
>gi|429327834|gb|AFZ79594.1| hypothetical protein BEWA_024430 [Babesia equi]
Length = 243
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 34/206 (16%)
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
ARDLI+LL+RSVP QA K+LDD + CDI+KIG ++RNK++F+KRRQ L+GP STLKAL
Sbjct: 3 ARDLIKLLARSVPFQQAKKVLDDGIFCDIVKIGGMLRNKDKFIKRRQRLIGPGGSTLKAL 62
Query: 168 EILTGCYILVQI----------------------------------LMVKKELEKDPALA 193
E+LT CYIL Q LM+K+ELEKDPAL
Sbjct: 63 ELLTECYILTQGQTVSIIGSIKGIKVARRIVEDCMKNVHPVYHIKELMIKRELEKDPALK 122
Query: 194 NENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 253
NENWDRFLP+FKK++VK KK K +KKP + P P K D LLESGEYF+ E +++ K
Sbjct: 123 NENWDRFLPQFKKRSVKHKKAKIVKKKPSSLLIPTQTPRKEDLLLESGEYFMLEEERKRK 182
Query: 254 KWQEKQEKQAEKTAENKRKRDAAFIP 279
K E++E Q +K+ E K++R+ F P
Sbjct: 183 KEIERREGQKKKSLEKKKRREEEFDP 208
>gi|387593593|gb|EIJ88617.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm3]
Length = 294
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 149/259 (57%), Gaps = 37/259 (14%)
Query: 38 DPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
+PF +G LE SSF +FP++REKY++E ++ AL + ++ ++ E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
T TRDPY+I++ RD ++L+SR VP +AI++ +D + DII I RNKE F+KRR+
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 156 LVGPNSSTLKALEILTGCYIL----------------------------------VQILM 181
L+GP +T+K+LE+LT CYIL ++ LM
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKSLKEVRNVVTMCMENIHPIYEIKKLM 211
Query: 182 VKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESG 241
+++ELEKDPAL ENW+R++P++KK + K++KV EK FP P Q K DK + SG
Sbjct: 212 IRRELEKDPALKTENWERYMPQYKKTHSKKRKVTIVEKTYRNTFPEPEQ-RKQDKEMMSG 270
Query: 242 EYFLSERKKESKKWQEKQE 260
Y +R K++ K+E
Sbjct: 271 TYVHKDRPKKNSSPNTKKE 289
>gi|378755182|gb|EHY65209.1| ribosomal RNA assembly protein mis3 [Nematocida sp. 1 ERTm2]
Length = 294
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 146/255 (57%), Gaps = 37/255 (14%)
Query: 36 KFDPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTV 93
K +PF +G LE SSF +FP++REKY+++ ++ AL + + ++ E + V
Sbjct: 30 KLEPFTEKGLKQFLETSSFEIMFPKHREKYIRDTEEYIRKALAQKTLLLAVDYHELVLKV 89
Query: 94 STTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRR 153
TT TRDPY++++ RD+++L+SR VP +AI++ +D + DII I RNKE F+KRR
Sbjct: 90 ETTPHTRDPYVVLQGRDMLKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRR 149
Query: 154 QHLVGPNSSTLKALEILTGCYIL----------------------------------VQI 179
+ L+GP +T+K+LE+LT CYIL ++
Sbjct: 150 ERLLGPRGNTIKSLELLTDCYILPFGNTVSAIGNYKSLKEVRTVVTKCMENIHPIYEIKR 209
Query: 180 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 239
LM+++ELEKDPAL ENW+R+LPK+KK + K++K EK T F P + K DK +
Sbjct: 210 LMIRRELEKDPALKTENWERYLPKYKKTHSKKRKTVIVEKTNRTTF-PEQEERKQDKEIM 268
Query: 240 SGEYFLSERKKESKK 254
SG Y +R S+K
Sbjct: 269 SGAYVPKDRPTRSEK 283
>gi|357625461|gb|EHJ75900.1| hypothetical protein KGM_05036 [Danaus plexippus]
Length = 243
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 152/246 (61%), Gaps = 43/246 (17%)
Query: 112 IRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT 171
++LLSRSVP QA+++LDDE+ CDIIKI + V KE F+KRRQ L+GPN TLK++E+LT
Sbjct: 1 MKLLSRSVPFEQAVRVLDDEIGCDIIKINSFVSKKETFLKRRQRLIGPNGVTLKSIELLT 60
Query: 172 GCYILVQI----------------------------------LMVKKELEKDPALANENW 197
CY+LVQ LM+K+EL KDP L NE+W
Sbjct: 61 DCYVLVQGNTVSTVGPYKGLLQVRRIVEDTMKNIHPMYNIKNLMIKRELMKDPKLKNESW 120
Query: 198 DRFLPKFKKKNV-KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQ 256
DRFLPKFK KNV +++ +KKPYTPFPPP SKIDK L SGEYFL + +K++K+
Sbjct: 121 DRFLPKFKSKNVPRKQPKNKIKKKPYTPFPPPQPESKIDKELASGEYFLKDEQKKAKRHH 180
Query: 257 EKQEKQ--AEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRK 314
EK+EKQ A+K + +RK+D FIPP EP+ ++ +E T D+ K K KK+ K
Sbjct: 181 EKEEKQMLAKKARQEERKKD--FIPPTEPASSHNKVSEQSTVDI----NQFKAKMKKVSK 234
Query: 315 QKFAEN 320
Q A N
Sbjct: 235 QNKALN 240
>gi|323305860|gb|EGA59597.1| Krr1p [Saccharomyces cerevisiae FostersB]
Length = 196
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/188 (52%), Positives = 118/188 (62%), Gaps = 37/188 (19%)
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI------------ 179
M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 1 MACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGL 60
Query: 180 ----------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKV 214
LM+K+EL K P LANE+W RFLP FKK+NV K KK+
Sbjct: 61 KEVRRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKI 120
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 121 RNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERA 180
Query: 275 AAFIPPEE 282
FI PEE
Sbjct: 181 KDFIAPEE 188
>gi|440296337|gb|ELP89164.1| hypothetical protein EIN_485560 [Entamoeba invadens IP1]
Length = 255
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 135/250 (54%), Gaps = 49/250 (19%)
Query: 27 PNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 86
P + W + F P N G++E S FS FP++RE Y++ P + L+E+ + +++
Sbjct: 2 PRTNIWTLTSFKPEDNPHGLVEESQFSVAFPKFREAYIKSILPALVAKLEEFKLKIDVDY 61
Query: 87 VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNK 146
++GS + TTRKT DP+II+K RD+++L+ R A KIL D+ CDIIKIGN+V ++
Sbjct: 62 LQGSFVIKTTRKTFDPFIIIKGRDMLKLIGRGADLELASKILLDDYWCDIIKIGNMVVDR 121
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQ---------------------------- 178
+R VKRRQ LVGPN +T KA+EILT C +VQ
Sbjct: 122 KRLVKRRQRLVGPNGATQKAIEILTECQFIVQGKTVAVIGKPEGLKLVRKIVEDCMNNIH 181
Query: 179 ------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP----------- 221
LM++KEL K+ + +E+WDR++PK+ KK +K + K +
Sbjct: 182 PVYNIKSLMIRKELAKNDKMKSESWDRYIPKYVKKYRPEKTEEEKLRIKKKKEIKRKIIE 241
Query: 222 ----YTPFPP 227
YTPFPP
Sbjct: 242 RKKNYTPFPP 251
>gi|160331564|ref|XP_001712489.1| rip1 [Hemiselmis andersenii]
gi|159765937|gb|ABW98164.1| rip1 [Hemiselmis andersenii]
Length = 283
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 117/203 (57%), Gaps = 34/203 (16%)
Query: 43 EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDP 102
+G ++ + +FP+Y+EK ++E+W ++K L + + L+L G + VSTT+ T DP
Sbjct: 19 KGSLVCATKMKIVFPKYQEKKIKESWKIIKKILNSFSIYSHLDLSFGFILVSTTKFTNDP 78
Query: 103 YIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSS 162
+ I+K RD ++L+SR VP QA KI +DE+ C+I+KI + +NK F+KRR+ L+G N S
Sbjct: 79 FSIIKGRDFLKLISRGVPVEQAAKIFEDEIICEILKISHFSKNKNIFLKRRRRLIGNNGS 138
Query: 163 TLKALEILTGCYILVQ----------------------------------ILMVKKELEK 188
T++A+E++T +ILVQ L++K+EL K
Sbjct: 139 TVRAIEMITKTFILVQGNTVSIMGNHSGLKQVRKIVQDCMNNIHPIFHIKNLIIKQELSK 198
Query: 189 DPALANENWDRFLPKFKKKNVKQ 211
D L ENWD++LP KKKN Q
Sbjct: 199 DKFLKKENWDQYLPLLKKKNFNQ 221
>gi|147791307|emb|CAN74500.1| hypothetical protein VITISV_013002 [Vitis vinifera]
Length = 97
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 10 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 68
Query: 65 QEAWPMVKGALKEYGVSCELNLVE 88
QEAWP V+GALKE+GV ELNLV+
Sbjct: 69 QEAWPTVRGALKEFGVKSELNLVQ 92
>gi|399949834|gb|AFP65491.1| Rev interacting protein Rip-1-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 282
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 36/204 (17%)
Query: 42 NEGGMLEVSS--FSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKT 99
N G + VS F +FP+Y+EKY++E+W ++ LK Y + L++ GS+T++TT+ T
Sbjct: 15 NFSGNVLVSDTFFYIIFPKYQEKYIRESWKIIYRILKSYFIKPFLDISNGSITITTTKFT 74
Query: 100 RDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
+DP +I+KAR + L+SRSVP QA KI DDE+ DIIKI + RNK+ F+KRR+ L+G
Sbjct: 75 KDPCVILKARAFLLLISRSVPVQQAAKIFDDEISFDIIKISSFTRNKKLFLKRRKRLIGL 134
Query: 160 NSSTLKALEILTGCYILVQ----------------------------------ILMVKKE 185
N ST++A+E+ T Y+LVQ ILM K+E
Sbjct: 135 NGSTIRAIEMATQTYMLVQGNTVSCMGTHAGIKQSRKIVEDCMKNVHPIFHIKILMTKQE 194
Query: 186 LEKDPALANENWDRFLPKFKKKNV 209
L KDP L +W++++P KKN+
Sbjct: 195 LSKDPTLQFVSWEKYIPFLNKKNL 218
>gi|19074128|ref|NP_584734.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19068770|emb|CAD25238.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 283
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 35/234 (14%)
Query: 48 EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
E+SS + +FP+YREKY+++ + AL+ +SC ++L + + V T R TRDP+I +K
Sbjct: 18 EMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIK 77
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
A + ++L+ R V +A+K+L+DE C++I I +V + + F KRR LVGP TLKA+
Sbjct: 78 AVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAI 137
Query: 168 EILTGCYILV--------------------------------QI--LMVKKELEKDPALA 193
+ILT CY+LV QI L+ K+++E D
Sbjct: 138 QILTRCYVLVHGKTVSIIGGFRGVEEAKKIVVDCMNNIHPMYQIKRLVEKRKMESDETKE 197
Query: 194 NENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSE 247
NE+W RFLP+ KK+ K+ K K +P P K D +E+GEYF+ +
Sbjct: 198 NEDWSRFLPQ-VKKSSKKSKKKKVVGRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|449328995|gb|AGE95270.1| hypothetical protein ECU04_0510 [Encephalitozoon cuniculi]
Length = 283
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 35/234 (14%)
Query: 48 EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
E+SS + +FP+YREKY+++ + AL+ +SC ++L + + V T R TRDP+I +K
Sbjct: 18 EMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIK 77
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
A + ++L+ R V +A+K+L+DE C++I I +V + + F KRR LVGP TLKA+
Sbjct: 78 AVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAI 137
Query: 168 EILTGCYILV--------------------------------QI--LMVKKELEKDPALA 193
+ILT CY+LV QI L+ K+++E D
Sbjct: 138 QILTRCYVLVHGKTVSIIGSFRGVEEAKKIVVDCMNNIHPMYQIKRLVEKRKMESDETKE 197
Query: 194 NENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSE 247
NE+W RFLP+ KK + K KK K +P P K D +E+GEYF+ +
Sbjct: 198 NEDWSRFLPQVKKSSKKSKKKKVA-GRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|303388924|ref|XP_003072695.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303301837|gb|ADM11335.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 282
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 38/242 (15%)
Query: 38 DPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTR 97
D F +E E+SS + +FP+YREKY+++ ++ AL+ +SC++++ E ++ V T R
Sbjct: 10 DDFKHE--FAEMSSETVMFPKYREKYIEQTQKYIEKALEAKKISCKIDMGERTIDVMTNR 67
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 157
TRDP+I VKA + ++L+SR V +A+K+L+DE C+++ I + +++ F KRR L+
Sbjct: 68 STRDPFIFVKAVNFVKLVSRGVGIEEAMKVLEDEYFCEVVDIKKMASSEKVFEKRRDRLI 127
Query: 158 GPNSSTLKALEILTGCYILV--------------------------------QI--LMVK 183
GP TLKA++ILT C++LV QI L+ K
Sbjct: 128 GPKEMTLKAIQILTKCHVLVHGKTVSIIGSFKGIEEVKKIVVDCMNNIHPMYQIRSLIEK 187
Query: 184 KELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEY 243
++LE+D + E+W RFLPK KK N K KK P P + I+ +E+GEY
Sbjct: 188 RKLEEDKSKEGEDWSRFLPKIKKSNKKSKKKVVGRPSGNMPLDVPKRKEDIE--METGEY 245
Query: 244 FL 245
F+
Sbjct: 246 FV 247
>gi|396081198|gb|AFN82816.1| putative RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 281
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 130/242 (53%), Gaps = 40/242 (16%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+E+SS + +FP+YREKY+++ + AL+ +SC+++L + + V T + TRDP+I
Sbjct: 16 FVEMSSEAVMFPKYREKYIEQTQKYIIKALEGKKISCKIDLEKRVIDVETNKSTRDPFIF 75
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KA + ++L+SR V +A+K+L+DE C++I I L + + F KRR L+GP TLK
Sbjct: 76 IKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKKLASSDKVFEKRRDRLIGPKEMTLK 135
Query: 166 ALEILTGCYILV--------------------------------QI--LMVKKELEKDPA 191
A++ILT CY+LV QI L+ K++LE D
Sbjct: 136 AIQILTKCYVLVHGKTVSIIGSFRGIEEVKKIVIDCMNNIHPMYQIKKLVEKRKLEGDIT 195
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYF----LSE 247
E+W RFLP+ KK N K KK P P + I+ +E+GEYF LS
Sbjct: 196 KEGEDWSRFLPEIKKSNKKSKKKIIGRHSGNMPSDIPKRKEDIE--METGEYFTDRELSG 253
Query: 248 RK 249
RK
Sbjct: 254 RK 255
>gi|401825966|ref|XP_003887077.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998235|gb|AFM98096.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 278
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 126/233 (54%), Gaps = 36/233 (15%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+EVSS S ++P+YREKY+++ + AL+ +SC ++L + + V+T + TRDP+I
Sbjct: 16 FVEVSSESVMYPKYREKYIEQTQKYIVKALEGKKISCNIDLEKRIIDVATNKSTRDPFIF 75
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KA + ++L+SR V +A+K+L+DE C++I I L + + F KRR L+GP TLK
Sbjct: 76 IKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKRLASSDKVFEKRRDRLIGPKEMTLK 135
Query: 166 ALEILTGCYILV--------------------------------QI--LMVKKELEKDPA 191
A++ILT CY+LV QI L+ K++LE D
Sbjct: 136 AIQILTKCYVLVHGKTVSIIGSFKGIEEVKKIVIDCMNNIHPMYQIKKLVEKRKLEGDKT 195
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 244
E+W RFLP+ KK N K KK +P P K D +E+GEYF
Sbjct: 196 KEGEDWSRFLPEIKKSNKKSKKKIV--GRPSGGMPSDIPKRKEDIEMETGEYF 246
>gi|256068106|ref|XP_002570691.1| hypothetical protein [Schistosoma mansoni]
Length = 180
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 102/178 (57%), Gaps = 43/178 (24%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ E+++ E +M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I
Sbjct: 2 IRVEIDVAESTMEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEI 61
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ--------------------- 178
+ N+ERFVKRR L+G + TLKALE+ T CYI+VQ
Sbjct: 62 N--LTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQ 119
Query: 179 --------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 222
L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 171
>gi|342181643|emb|CCC91123.1| putative ribosomal RNA assembly protein [Trypanosoma congolense
IL3000]
Length = 177
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ LK++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 21 GGACCVDETTFATQFPSYLESYIRSIWPAVEMVLKQHQLTGKLDLMEGSMTVATTRRTWD 80
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RFVKRR LVGP
Sbjct: 81 PYSIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFVKRRDRLVGPQG 140
Query: 162 STLKA 166
S K
Sbjct: 141 SDTKG 145
>gi|358256270|dbj|GAA57747.1| ribosomal RNA assembly protein, partial [Clonorchis sinensis]
Length = 359
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 102/178 (57%), Gaps = 43/178 (24%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ EL+L E SM V TT KT DP+II+KARD++RLL+RSVP QAI++L D++ D+I+I
Sbjct: 2 IRAELDLTESSMEVRTTPKTFDPFIILKARDVMRLLARSVPFEQAIRVLQDDIFSDVIEI 61
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI-------------------- 179
+ N+ERF+KRR L+G TLKALE+ T CYI+VQ
Sbjct: 62 N--LTNRERFIKRRNRLIGYEGETLKALELSTNCYIVVQGKTVSAIGHYEDLKQVRKIVL 119
Query: 180 ---------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 222
L++ K+L+ DP + +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLQADPTKKDVSWDRFLPKLK------KKVLSRRRKPH 171
>gi|300709315|ref|XP_002996823.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
gi|239606149|gb|EEQ83152.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
Length = 228
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 114/207 (55%), Gaps = 35/207 (16%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
KFD + E++ F +P+YR+KY+++ + AL+ +SC ++ VE S+ V T
Sbjct: 5 KFDEKDFKNSFKEINKFLVYYPKYRDKYIEQVNKYIIKALENKKLSCNIDSVERSIEVFT 64
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
KTRDP+I VK D IRL++++V A+K+L+DE +II+I +V++++ F KRR
Sbjct: 65 NTKTRDPFIFVKGCDFIRLVAKNVDVETAMKVLEDEYCGEIIEIRKMVKSEKVFTKRRDR 124
Query: 156 LVGPNSSTLKALEILTGCYILV------------------QI-----------------L 180
L+G NS LKAL++++ CYI + QI L
Sbjct: 125 LIGKNSMVLKALKMISKCYIYITGKHIGVVGSYDGLTVVKQIVYDCIANNKHPIYEIKKL 184
Query: 181 MVKKELEKDPALANENWDRFLPKFKKK 207
+VK +L +D + NE+W R +P +KK+
Sbjct: 185 IVKNQLGEDKEMENEDWKRHIPDYKKR 211
>gi|353233461|emb|CCD80816.1| hypothetical protein Smp_115060 [Schistosoma mansoni]
Length = 168
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 95/167 (56%), Gaps = 43/167 (25%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I + N+ERFV
Sbjct: 1 MEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEIN--LTNRERFV 58
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------- 178
KRR L+G + TLKALE+ T CYI+VQ
Sbjct: 59 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYDNIHPAY 118
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 222
L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 119 SIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 159
>gi|162606356|ref|XP_001713208.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
gi|12580674|emb|CAC26992.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
Length = 262
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 35/201 (17%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N ++EVS F FP+Y+E Y++E W ++ +K + +N+ G + + + K D
Sbjct: 20 NITNLIEVSCFKIKFPKYQENYIKENWHIINRIMKIRSIVVTINVNLGLVEIMNSLKGFD 79
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+KA+D I L+ R VP QA KI D++ C+IIKI +++ F+K+R+ L+G N
Sbjct: 80 PYSIIKAKDFITLVCRGVPIFQASKIFKDDIFCEIIKISKFTSSRQSFLKKRKRLIGNNG 139
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
T+K +E+LT CYIL+Q + +KK+L
Sbjct: 140 VTVKTIELLTKCYILIQGNTVACMGKFRDLKWCINIITKSMTNNHPIFYLKNIQIKKKLM 199
Query: 188 KDPALANENWDRFLPKFKKKN 208
D +NWD++L F+KKN
Sbjct: 200 NDEFFKTKNWDKYLL-FEKKN 219
>gi|330040298|ref|XP_003239843.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
gi|327206768|gb|AEA38945.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
Length = 241
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 45/224 (20%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
S F LFP+Y+E ++E+W +K Y + +LNL G + +S + T+DP++I+KAR
Sbjct: 21 SKFVVLFPKYQENCIKESWKTIKKIFFFYKLKLKLNLKFGFIEISNSLNTKDPFVIIKAR 80
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
D ++L++RSVP QA KI DD++ CDIIKI NK F+K+R++L+G +K +E+
Sbjct: 81 DFVKLIARSVPVRQAAKIFDDQIFCDIIKISRSNCNKFNFLKKRKNLIGKKGIVVKIIEV 140
Query: 170 LTGCYILVQ----------------------------------ILMVKKELEKDPALANE 195
+T CY+++Q +L++K++L N+
Sbjct: 141 ITQCYLIIQGNTVSCMGQHLGIKYVRNIVENSTFKIHPILYIKMLIMKQKLYNILKFNNQ 200
Query: 196 NWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 239
NW+++LP F K K P T QP+ I+ L+
Sbjct: 201 NWEKYLPFFNTK-----------KLPSTSKILKNQPNTINLFLQ 233
>gi|440491940|gb|ELQ74542.1| rRNA processing protein [Trachipleistophora hominis]
Length = 246
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 105/206 (50%), Gaps = 34/206 (16%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
LE S F ++ ++ E L+E +K LKE V ++N E + +STT KTRDPY+I
Sbjct: 12 FLEKSRFEIVYARHLESTLKENQKRIKALLKEKNVRIKINYDERVVQMSTTSKTRDPYVI 71
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+K++D I L+ + VP +A +I DDE+ ++ I L NKE F+ RR L+GPN TLK
Sbjct: 72 IKSKDFITLVCKGVPLQEAERIFDDEISYAMLNIQQLASNKEVFINRRNRLIGPNGDTLK 131
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
ALE+LT YIL++ L+ KKE+E+
Sbjct: 132 ALEMLTKTYILMKSKCVCVIGSFANVLKVEQFVLKVMENYHPVHLLKQLVAKKEVEQCTE 191
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSK 217
+ NW F+P KKK K+ K K
Sbjct: 192 KKDMNWKNFVPVVKKKTGGSKQTKRK 217
>gi|345310359|ref|XP_001517030.2| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 207
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 72/94 (76%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL+E+ V L+L+EG
Sbjct: 114 DGWKEPTFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALQEHHVKATLDLIEG 173
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
SMTV TT+KT DPY+I++ARDLI+LL+RSVP Q
Sbjct: 174 SMTVCTTKKTFDPYVIIRARDLIKLLARSVPFEQ 207
>gi|397617920|gb|EJK64671.1| hypothetical protein THAOC_14573, partial [Thalassiosira oceanica]
Length = 126
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 5/104 (4%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQ 65
KK+ K+ + KPWD + +IDHW+ +D + G +LE SSF+TLFP+YREKYL+
Sbjct: 24 GKKNHNKYRRDKPWD-NADIDHWENNPWDESTGDTLPGGRLLEESSFATLFPKYREKYLR 82
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
E WP+V L +Y ++CELNLVEGSMTV TT KT DPYII+KAR
Sbjct: 83 EVWPLVTRTLDKYKIACELNLVEGSMTVRTTLKTSDPYIILKAR 126
>gi|402469222|gb|EJW04243.1| hypothetical protein EDEG_01475 [Edhazardia aedis USNM 41457]
Length = 331
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
+KV +F+ + E S F+ +FP +R++Y+++ ++ L E + E+N + +
Sbjct: 3 FKVPEFNDDDYKDEFTEQSEFTVVFPDWRKQYIKDKQEKIEELLTEKKLKLEVNYEDKIL 62
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR--NKERF 149
V TT KTRDPYII+K RD I L+SR +A KI +D + C++I I L + NK F
Sbjct: 63 KVLTTNKTRDPYIIIKGRDFINLISRGAVFEEATKIFNDNVFCEVINIKQLAKSSNKAVF 122
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYI---------------------------------- 175
R+ L G N T+KAL++LT YI
Sbjct: 123 QNRKHRLEGKNGDTIKALQLLTKTYITMEGKSLCVVGKYKGINEVSDIVEKVFQNQHPVY 182
Query: 176 LVQILMVKKELEKDPALANENWDRFLPKFKKK 207
L++ L+ K+ELE D + +++W R LP+ + K
Sbjct: 183 LLKRLLAKRELENDKEIKDQDWTRLLPEVRSK 214
>gi|351712286|gb|EHB15205.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 219
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 119/232 (51%), Gaps = 54/232 (23%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
++ L+L+EGSMTV T++KT DPYII++
Sbjct: 15 INATLDLIEGSMTVCTSKKTFDPYIIIR-------------------------------- 42
Query: 140 GNLVRNKERFVKRRQHLVGPNSS-------TLKALEILTGCYILVQILMVKKELEKDPAL 192
GN V +GP S L ++ + Y ++ LM+K+EL KD L
Sbjct: 43 GNTV-----------SAIGPFSGLKEVRKVVLDTMKNIHPIY-YIKTLMIKRELAKDSEL 90
Query: 193 ANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKK 250
+++W+RFL +FK KNV ++K K+ YTPFPPP S++DK L SGEYFL +K
Sbjct: 91 RSQSWERFLSQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQVDKELASGEYFLKANQK 150
Query: 251 ESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+ +K + + KQAE ++ + +R+ AFIPP+E S EA +T DVA +
Sbjct: 151 KRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVAKSKEASTETKIDVATI 202
>gi|47180661|emb|CAG14635.1| unnamed protein product [Tetraodon nigroviridis]
Length = 109
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 71/99 (71%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + L+L+EG
Sbjct: 10 DGWKEPSFTKEDNPHGLLEESSFATLFPKYREAYLKECWPLVEKALSDVHIKASLDLIEG 69
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
S+TV TTRKT DPY I++ARDL++L++RSVP Q I L
Sbjct: 70 SVTVCTTRKTFDPYAIIRARDLVKLIARSVPFEQVIIAL 108
>gi|429327831|gb|AFZ79591.1| ribosomal RNA assembly protein, putative [Babesia equi]
Length = 147
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 5/102 (4%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
EK NKK++ K KPWD D +DHWK+E F N+ +LE SSFS LFP+YREKY+Q
Sbjct: 5 EKGRNKKYR----KDKPWD-DETVDHWKIEPFTSEDNKPSLLEESSFSILFPKYREKYIQ 59
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
W VK +L +Y + C+LNLVEGSM+V TT++T DPYII+K
Sbjct: 60 SVWGDVKKSLSDYHIKCDLNLVEGSMSVFTTKRTWDPYIIIK 101
>gi|429966251|gb|ELA48248.1| hypothetical protein VCUG_00289 [Vavraia culicis 'floridensis']
Length = 246
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 38/225 (16%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
S F ++ ++ E L+E++ ++ L+E + +++ E + VSTT KTRDPY+I+K++
Sbjct: 16 SRFEIVYAKHLEDSLKESYKSMRTLLREKNIRIKMDRDERLIQVSTTSKTRDPYVILKSK 75
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
D + L+ + VP +A K+ DD M I I L +KE F+ RR L+GPN TL AL++
Sbjct: 76 DFVTLICKGVPLEEAQKVFDDNMSYAWINIQALASDKEVFINRRNRLIGPNGDTLTALKM 135
Query: 170 LTGCYILV---------------QI-------------------LMVKKELEKDPALANE 195
LT YILV Q+ +M KKE+E+ +
Sbjct: 136 LTKTYILVKSKSVCVIGPFASVLQVEQFVLKVMENYHPVHLLKQMMAKKEVEQCADKKDM 195
Query: 196 NWDRFLPKFKKKNVKQKKVK----SKEKKPYTPFPPPPQPSKIDK 236
NW F+P KKK KKVK +E K + P + +I K
Sbjct: 196 NWKNFVPVVKKKIGGSKKVKRQFNVREGKLFMDMPVRKEDVEIVK 240
>gi|429962930|gb|ELA42474.1| hypothetical protein VICG_00573 [Vittaforma corneae ATCC 50505]
Length = 289
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 42/247 (17%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
+K FD LEVS F LFP++R +YL+ A + V E++ + +M
Sbjct: 16 FKASTFDESKVRHSFLEVSVFEVLFPKHRAQYLKGVESYAIKACEVKKVHFEVDYDKFTM 75
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
VSTT +TRDPYII+KA ++I+LL R V A+K+L+D + ++++ L ++ F +
Sbjct: 76 RVSTTDRTRDPYIIIKAYEMIQLLGRGVTLENAVKVLEDGIASEVLQARMLCSTEKIFER 135
Query: 152 RRQHLVGPNSSTLKALEILTGCYILV---------------------------------- 177
RRQ L P L+++E++T ++L+
Sbjct: 136 RRQRLSNPK--ILQSIELITKTHVLISNKTVCIVGEYKGVHEAKNIIIKCFENIHPAFEL 193
Query: 178 QILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKL 237
+ L++KK+L KD A +W+RFLP K K K K ++ P K D
Sbjct: 194 KRLIIKKKLMKDNAEG--DWERFLPNIK----KTHSKKKKTRRETGSMPEEIHERKEDLQ 247
Query: 238 LESGEYF 244
+++GEYF
Sbjct: 248 MQTGEYF 254
>gi|149478667|ref|XP_001516023.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 179
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
Query: 177 VQILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKI 234
++ LM+K+EL KD L +NW+RFLPKFK KN+ ++K K K KK YTPFPPP S+I
Sbjct: 18 IKTLMIKRELSKDSELRTQNWERFLPKFKHKNLNKRKEPNKKKVKKEYTPFPPPQPESQI 77
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
DK L SGEYFL +K+ +K +E + KQAE ++ + +R+ AFIPP+E
Sbjct: 78 DKELASGEYFLKASQKKRQKMEEIKAKQAEVLSKRQAERNKAFIPPKE 125
>gi|148689795|gb|EDL21742.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_a [Mus musculus]
Length = 198
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 177 VQILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKI 234
++ LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+I
Sbjct: 36 IKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQI 95
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDK 294
DK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA +
Sbjct: 96 DKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEASTE 155
Query: 295 TN-DVAAM 301
T DVAA+
Sbjct: 156 TKIDVAAI 163
>gi|296086789|emb|CBI32938.3| unnamed protein product [Vitis vinifera]
Length = 96
Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
MQC+IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY LVQ
Sbjct: 1 MQCNIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYTLVQ 47
>gi|356532666|ref|XP_003534892.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA assembly protein
KRR1-like [Glycine max]
Length = 269
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 292
+ID LE+GEYFLS ++K QEKQEKQAEKTAE KRKR+ AFIPP+EP+ ++E
Sbjct: 161 QIDIQLETGEYFLSNKRK----XQEKQEKQAEKTAEXKRKREEAFIPPKEPANLVD-KSE 215
Query: 293 DKTNDVAAMAKSLK--EKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 341
D ++VA MA SLK ++ KK K+K E IN E YI S E+ S KK K
Sbjct: 216 DANSNVADMAMSLKVNKQTKKFGKRKSEEIINAETYIIGSSEQASGKKSKK 266
>gi|335775908|gb|AEH58729.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 159
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 180 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKL 237
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+IDK
Sbjct: 1 LMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKE 60
Query: 238 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN- 296
L SGEYFL +K+ +K + + KQAE ++ + +R AFIPP+E EA +T
Sbjct: 61 LASGEYFLKASQKKRQKMEAVKAKQAEALSKRQEERKKAFIPPKEKPVVKPKEASTETKI 120
Query: 297 DVAAM 301
DVAA+
Sbjct: 121 DVAAI 125
>gi|149066985|gb|EDM16718.1| rCG48818, isoform CRA_b [Rattus norvegicus]
Length = 198
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Query: 177 VQILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKI 234
++ LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S++
Sbjct: 36 IKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQV 95
Query: 235 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
DK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 96 DKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 143
>gi|443926900|gb|ELU45449.1| hypothetical protein AG1IA_00511 [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 36/138 (26%)
Query: 181 MVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEKKP----------------- 221
MVK+EL KDP LA E+WDRFLP+F+K+++ QK K +E++
Sbjct: 1 MVKRELAKDPKLATESWDRFLPQFRKRHLTSAQKSAKKRERQEGATNANATPLGDGSAPA 60
Query: 222 -----------------YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 264
YTPFPP P K+D LESGEYFL + KE+++ +++ KQAE
Sbjct: 61 PASAPATEKKEKPKKKVYTPFPPAQLPRKVDLELESGEYFLKAKDKEAREEAKRKAKQAE 120
Query: 265 KTAENKRKRDAAFIPPEE 282
TAE K++R+ ++ P E
Sbjct: 121 ATAERKKEREEVYVAPAE 138
>gi|440790290|gb|ELR11573.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 100
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T KK+ K+ K KPWD D +IDHWKV+ F P N+ G LE SSF+TLFP+YRE YL+E
Sbjct: 15 TPQKKNHKKYRKDKPWDND-SIDHWKVDAFKPEDNKAGSFLEESSFATLFPKYRESYLRE 73
Query: 67 AWPMVKGALKEYGVSCELNLVE 88
+W + ALK+ G+ C LNL+E
Sbjct: 74 SWAAITKALKDVGIDCTLNLIE 95
>gi|323309950|gb|EGA63146.1| Krr1p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKT-RDPYIIVKAR-DLIRLLSRSVPAPQ 123
L ++ + C L+LVEGSMTV TTRK R Y R D I RS PA +
Sbjct: 64 LDKHNIXCVLDLVEGSMTVKTTRKNIRSRYHFESQRFDQIIGEIRSFPASR 114
>gi|358346239|ref|XP_003637177.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355503112|gb|AES84315.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 90
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 43/46 (93%)
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTR 100
FPQYREKYLQEAWP+VK +LKE+G+S ELNLVEGSMTVSTTRKT+
Sbjct: 32 FFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTK 77
>gi|269860430|ref|XP_002649936.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
gi|220066623|gb|EED44098.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
Length = 220
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 38/201 (18%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
KFD + +E++ +S LF + R Y++ ++ A++ ++ E+N +M V T
Sbjct: 7 KFDESVFKHEFVEMTEYSVLFAKSRSNYIKSIEKYLQKAVEAKKLTFEINWNTNTMFVRT 66
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
+ TRDPYII+KA++L+ L+S+ V I +L+D + +II I L RN + RR
Sbjct: 67 NKMTRDPYIIIKAQELLELISKGVLLENCINLLEDGVFSEIIYINVLTRNPTVYENRRNR 126
Query: 156 LVGPNSSTLKALEIL----------TGCYIL------------------------VQILM 181
L P LKALEIL T C + ++ LM
Sbjct: 127 LSNP--KVLKALEILSKTKITVGTKTVCVVGDHDGIDVVRNVVLKAFKNIHPAYEIKALM 184
Query: 182 VKKELEKDPALANENWDRFLP 202
+K +L KD +WDRFLP
Sbjct: 185 IKHKLSKDN--IEGDWDRFLP 203
>gi|294951882|ref|XP_002787157.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
gi|239901838|gb|EER18953.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
Query: 157 VGPNSSTLKALEILTGCY------ILVQILMVKKELEKDPALANENWDRFLPKFKKKNVK 210
+G + + + I+ C+ V+ LM+KKELEK+ L +ENWDRFLP FK +NV+
Sbjct: 1 MGTHKALKQVRRIVEDCFHNVHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQ 60
Query: 211 QKKVKSKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 269
+KK K KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + +
Sbjct: 61 RKKQKKIAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQR 120
Query: 270 KRKRDAAFIPP 280
KR+R+ + P
Sbjct: 121 KREREEMYSQP 131
>gi|47187716|emb|CAF94757.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Query: 178 QILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKL 237
Q LM+K+EL KDP L +++W+RFLPKF+ KN+ +++ P+ +D+
Sbjct: 1 QTLMIKRELAKDPELRSQSWERFLPKFRHKNLAKRR--------------EPKKKAVDQE 46
Query: 238 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
L +GE+FL E K+ KK + + KQAE + K R+ FIPP+E
Sbjct: 47 LATGEFFLRESVKKRKKMEAIKVKQAEVLIKKKEARNKHFIPPKE 91
>gi|432096557|gb|ELK27204.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 183
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 29/130 (22%)
Query: 175 ILVQILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 232
+ + LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPF PPPQP
Sbjct: 45 VHFKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPF-PPPQP- 102
Query: 233 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 292
E Q KQAE ++ + +R+ AFIPP+E EA
Sbjct: 103 ------------------------ESQAKQAEALSKRQEERNKAFIPPKEKPVLKPKEAS 138
Query: 293 DKTN-DVAAM 301
+T DVAA+
Sbjct: 139 TETKIDVAAI 148
>gi|313244425|emb|CBY15218.1| unnamed protein product [Oikopleura dioica]
Length = 197
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFS-TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVE 88
D WK E+F P N G LE S F TLFP+YREKYL+E P+V+ L Y + CEL+ +E
Sbjct: 131 DGWKPEEFKPEHNPNGCLEESKFRFTLFPKYREKYLKEVRPLVEKFLTLYFLKCELDSIE 190
Query: 89 GSMT 92
GS++
Sbjct: 191 GSIS 194
>gi|26347389|dbj|BAC37343.1| unnamed protein product [Mus musculus]
Length = 131
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 222 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 281
YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+
Sbjct: 16 YTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPK 75
Query: 282 EPSRQNSCEAEDKTN-DVAAM 301
E EA +T DVAA+
Sbjct: 76 EKPAVKPKEASTETKIDVAAI 96
>gi|432108524|gb|ELK33238.1| Calcyphosin-2 [Myotis davidii]
Length = 666
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
V+ L+L+EGSMTV TT+KT DPYII++ RDLI+LL+R+
Sbjct: 30 VNATLDLIEGSMTVCTTKKTFDPYIIIRIRDLIKLLART 68
>gi|351700923|gb|EHB03842.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 179
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
++ L L+EGSMTV TT+KT DPYII++ARDLI+LL S
Sbjct: 15 LNATLGLIEGSMTVCTTKKTSDPYIIIRARDLIKLLPES 53
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 232 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA 291
S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFI P+E EA
Sbjct: 53 SQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKAFITPKEKPVAKPKEA 112
Query: 292 EDKTN-DVAAM 301
+T DVA +
Sbjct: 113 STETKIDVATI 123
>gi|195575648|ref|XP_002077689.1| GD22935 [Drosophila simulans]
gi|194189698|gb|EDX03274.1| GD22935 [Drosophila simulans]
Length = 110
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 216 SKEKKPYTPFPPPPQP-SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 274
+KE K T QP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+
Sbjct: 6 AKETKISTEPVDNAQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN 65
Query: 275 AAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEK 308
F+PP E S +S + ED ++ K+LK K
Sbjct: 66 KDFVPPTEESAASSRKKEDGSSSNKVDVKALKAK 99
>gi|448704680|ref|ZP_21700681.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
gi|445796078|gb|EMA46591.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
Length = 185
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R P +A+++LDDEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFPPEEALRLLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G + T + +E LTG +++
Sbjct: 88 IDAAARNKNDLQRQKGRLIGEDGRTRELMEELTGASVVI 126
>gi|448304025|ref|ZP_21493970.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445592112|gb|ELY46304.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 185
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +KA D++R + R P A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFPPEAALQLLEDEMMMFDLVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 INAAARNKNDLKRKKGRLIGEGGRTRELMEELTGAEVVI 126
>gi|15668619|ref|NP_247417.1| putative RNA-processing protein [Methanocaldococcus jannaschii DSM
2661]
gi|2495988|sp|Q57885.1|Y443_METJA RecName: Full=KH domain-containing protein MJ0443
gi|1591147|gb|AAB98430.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 227
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KARD++R + R A+K++ DE +
Sbjct: 42 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLE 100
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+I I + + + + ++G + + +E LTG + V
Sbjct: 101 VIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSV 142
>gi|289193176|ref|YP_003459117.1| KH domain protein [Methanocaldococcus sp. FS406-22]
gi|288939626|gb|ADC70381.1| KH domain protein [Methanocaldococcus sp. FS406-22]
Length = 218
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KA+D++R + R A+K++ DE +
Sbjct: 38 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKAKDIVRAIGRGFNPEIALKLVSDEYVLE 96
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+I I + ++ + + ++G + + +E LTG + V
Sbjct: 97 VIDIEDYASSENSIRRLKGRVIGKEGKSRRYIESLTGANVSV 138
>gi|374636257|ref|ZP_09707834.1| KH domain protein [Methanotorris formicicus Mc-S-70]
gi|373559594|gb|EHP85885.1| KH domain protein [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ +G +T+ +T K +D KARD++R + R A+K+L DE +I
Sbjct: 41 ELGVELEIS-EDGDVTIYSTEKQKDALATWKARDIVRAIGRGFSPENALKLLSDEYVLEI 99
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I I ++ + + ++G + K +E LTG + V
Sbjct: 100 IDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSV 140
>gi|354609668|ref|ZP_09027624.1| KH domain protein [Halobacterium sp. DL1]
gi|353194488|gb|EHB59990.1| KH domain protein [Halobacterium sp. DL1]
Length = 183
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +GS+ + + DP +KA +++R + R +A+ +LDDEM+ D I
Sbjct: 31 VELDVDSQDGSVAIE---RVGDPVRGMKAPEIVRAIGRGFKPDEALSLLDDEMRMFDTID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
IG RN +++ L+G N T + +E LTG +++
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGANVVI 126
>gi|256810935|ref|YP_003128304.1| putative RNA-processing protein [Methanocaldococcus fervens AG86]
gi|256794135|gb|ACV24804.1| KH domain protein [Methanocaldococcus fervens AG86]
Length = 216
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KA+D++R + R A++++ DE +
Sbjct: 38 KELGVKLEIDE-DGTVTIYGTEKQKDPLAVWKAKDIVRAIGRGFNPEIALRLVSDEYVLE 96
Query: 136 IIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILV 177
+I I + N E VKR + ++G + + +E LTG + V
Sbjct: 97 VIDIEDYA-NSENAVKRLKGRVIGKEGKSRRYIEELTGANVSV 138
>gi|6441092|dbj|BAA78603.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 72
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 10/62 (16%)
Query: 10 NKKHKGK--HDKPKPWDEDPNIDHWK----VEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
NK +GK + K KPWD D IDHW V K D N G+LE SSF+ LFP+YREKY
Sbjct: 15 NKPKRGKQANRKEKPWDHD-GIDHWALPPPVTKED---NPTGLLEESSFAVLFPKYREKY 70
Query: 64 LQ 65
L+
Sbjct: 71 LR 72
>gi|256072157|ref|XP_002572403.1| hypothetical protein [Schistosoma mansoni]
gi|353233460|emb|CCD80815.1| hypothetical protein Smp_009340 [Schistosoma mansoni]
Length = 177
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 192 LANENWDRFLPKFKKKNVKQ-----KKV---KSKEKKPYTPFPPPPQPSKIDKLLESGEY 243
A+ ++ PK+++K + + +++ ++KK Y PFPPPP SKID LE G Y
Sbjct: 60 FASSSYTTLFPKYREKYLTEIWPVLRRIMMEHVRKKKEYNPFPPPPVQSKIDIELEKGTY 119
Query: 244 FLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPP 280
FL+E +++ K + K + + E K KR AA IPP
Sbjct: 120 FLAEAERKRLKVESNITKSNQISKERQKAKRSAALIPP 157
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
WK KF+P N G + SS++TLFP+YREKYL E WP+++ + E+
Sbjct: 44 WKEPKFNPEDNPHGRLFASSSYTTLFPKYREKYLTEIWPVLRRIMMEH 91
>gi|448320958|ref|ZP_21510441.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
gi|445604851|gb|ELY58792.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
Length = 185
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQLDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G + T + +E L+G +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVI 126
>gi|448406892|ref|ZP_21573324.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
gi|445676698|gb|ELZ29215.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
Length = 182
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHL 156
+T DP +K D+++ + R +A+++LDDEM DII I RN+ + + L
Sbjct: 46 QTGDPLTALKGPDIVKAIGRGFAPEEAMRLLDDEMMMFDIIDIDAAARNRNDLQRHKGRL 105
Query: 157 VGPNSSTLKALEILTGCYILV 177
+G + T + +E L+G +++
Sbjct: 106 IGEDGRTRELMEELSGASVVI 126
>gi|435849099|ref|YP_007311349.1| KH domain protein [Natronococcus occultus SP4]
gi|433675367|gb|AGB39559.1| KH domain protein [Natronococcus occultus SP4]
Length = 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 138
V +++ GS+ V + DP +K +++R + R P +A+++LDD+M Q D++
Sbjct: 31 VRLDIDSENGSVAVESVG---DPVSGLKGPEIVRAIGRGFPPEEALQLLDDDMMQFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G + T + +E L+G +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVI 126
>gi|297618876|ref|YP_003706981.1| KH domain-containing protein [Methanococcus voltae A3]
gi|297377853|gb|ADI36008.1| KH domain protein [Methanococcus voltae A3]
Length = 186
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 95 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQ 154
+T K D + KARD+++ + R +A+K+L D C+II I +++ ++ +
Sbjct: 51 STDKQVDALSLWKARDIVKAIGRGFSPEKALKLLSDSYMCEIIDISEYANSEKALLRLKG 110
Query: 155 HLVGPNSSTLKALEILTGCYILV 177
++G + + +E LTG YI V
Sbjct: 111 RIIGSGGKSRRYVEELTGTYISV 133
>gi|448315617|ref|ZP_21505258.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
gi|445610989|gb|ELY64752.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
Length = 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G + T + +E L+G +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVI 126
>gi|433637168|ref|YP_007282928.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|448376349|ref|ZP_21559558.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
gi|433288972|gb|AGB14795.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|445657274|gb|ELZ10103.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
Length = 189
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIK 138
V +++ GS+ V T DP + +K D++R + R A+ +LDDE M DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALALLDDELMMFDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RN +++ L+G N T + +E L+G +++
Sbjct: 88 IDTASRNANDMKRQKGRLIGENGRTRELMEELSGASVVI 126
>gi|312136521|ref|YP_004003858.1| kh domain-containing protein [Methanothermus fervidus DSM 2088]
gi|311224240|gb|ADP77096.1| KH domain protein [Methanothermus fervidus DSM 2088]
Length = 188
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G +T+ ++ DP ++KARD++R + R A+++L++++ D+I I +
Sbjct: 36 LEIDSESGMVTIIPKSESIDPMYVLKARDIVRAIGRGFSPEVALRLLNEDVMLDVIDISD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
V R+K+ +++ ++G + T + +E +TG I V
Sbjct: 96 YVGRSKKAIRRQKGRIIGKDGKTRQIIENMTGANISV 132
>gi|448354706|ref|ZP_21543461.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
gi|445637037|gb|ELY90193.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
Length = 194
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++LDD+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLDDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|333911635|ref|YP_004485368.1| KH domain-containing protein [Methanotorris igneus Kol 5]
gi|333752224|gb|AEF97303.1| KH domain protein [Methanotorris igneus Kol 5]
Length = 194
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+E GV E++ +G +T+ +T K +D KARD++ + R A+K+L DE +
Sbjct: 40 RELGVELEISK-DGDVTIYSTEKQKDALATWKARDIVMAIGRGFSPENALKLLSDEYVLE 98
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
II I ++ + + ++G + K +E LTG + V
Sbjct: 99 IIDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSV 140
>gi|399576154|ref|ZP_10769911.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
gi|399238865|gb|EJN59792.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
Length = 206
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + + DP + A D++R + R A+ +LD++M+ D+I
Sbjct: 54 VRLDIDSESGSVAIDSVG---DPVTGLAAPDIVRAIGRGFKPEVALSLLDNDMRMFDLID 110
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
IG RNK +++ L+G N T + +E L+G ++++
Sbjct: 111 IGEATRNKNDMKRQKGRLIGENGRTRQLMEELSGAHVVI 149
>gi|150400216|ref|YP_001323983.1| putative RNA-processing protein [Methanococcus vannielii SB]
gi|150012919|gb|ABR55371.1| KH type 1 domain protein [Methanococcus vannielii SB]
Length = 184
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ GV E++ EG +T+ +T + +D + KARD+++ + R +A+K+L DE +
Sbjct: 32 DLGVELEID-SEGEVTIYSTEEQKDALALWKARDIVKAVGRGFSPEKALKLLSDEHSFET 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I I + + + + ++G + + + +E LTG ++ V
Sbjct: 91 IDITEYASSDKALQRLKGRIIGSSGKSRRYIEELTGTHVSV 131
>gi|15791048|ref|NP_280872.1| RNA-processing protein [Halobacterium sp. NRC-1]
gi|169236798|ref|YP_001689998.1| RNA-processing protein [Halobacterium salinarum R1]
gi|10581643|gb|AAG20352.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727864|emb|CAP14652.1| KH domain protein [Halobacterium salinarum R1]
Length = 183
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ + +T DP ++A ++++ + R +A+ +LDD+M+ D I
Sbjct: 31 VDIDVDSQDGAVAIE---RTGDPVRGMQAPEIVQAIGRGFKPDEALTLLDDDMRMFDTID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
IG RN +++ L+G N T + +E LTG +++
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGASVVI 126
>gi|257386765|ref|YP_003176538.1| KH type 1 domain-containing protein [Halomicrobium mukohataei DSM
12286]
gi|257169072|gb|ACV46831.1| KH type 1 domain protein [Halomicrobium mukohataei DSM 12286]
Length = 182
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V + DP +K D+++ + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSESGSVGVESVG---DPITGLKGPDIVKAIGRGFNPEDALALLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RN+ F +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNQNDFTRQKGRLIGEGGRTRELMEELTGASVVI 126
>gi|289581759|ref|YP_003480225.1| KH domain-containing protein [Natrialba magadii ATCC 43099]
gi|448282835|ref|ZP_21474117.1| RNA-processing protein [Natrialba magadii ATCC 43099]
gi|289531312|gb|ADD05663.1| KH domain protein [Natrialba magadii ATCC 43099]
gi|445575450|gb|ELY29925.1| RNA-processing protein [Natrialba magadii ATCC 43099]
Length = 192
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++L DD M DI+
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLEDDMMMFDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|448312672|ref|ZP_21502412.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
gi|445600868|gb|ELY54868.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
Length = 185
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVSGLKAPDIVRAIGRGFAPDAALRLLEDEMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RN +++ L+G + T + +E LTG +++
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEDGRTRELMEELTGADVVI 126
>gi|448401055|ref|ZP_21571461.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
gi|445666868|gb|ELZ19524.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
Length = 185
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|448356505|ref|ZP_21545238.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
gi|445653538|gb|ELZ06409.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
Length = 185
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|429191701|ref|YP_007177379.1| KH domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325155|ref|ZP_21514553.1| RNA-processing protein [Natronobacterium gregoryi SP2]
gi|429135919|gb|AFZ72930.1| KH domain protein [Natronobacterium gregoryi SP2]
gi|445616294|gb|ELY69922.1| RNA-processing protein [Natronobacterium gregoryi SP2]
Length = 187
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP +K +++R + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVRGLKGPEIVRAIGRGFAPEDALTLLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G N T + +E L+G +++
Sbjct: 88 IDAAARNKNDLQRQKGRLIGENGRTRELMEELSGASVVI 126
>gi|150403542|ref|YP_001330836.1| putative RNA-processing protein [Methanococcus maripaludis C7]
gi|159904678|ref|YP_001548340.1| putative RNA-processing protein [Methanococcus maripaludis C6]
gi|150034572|gb|ABR66685.1| KH type 1 domain protein [Methanococcus maripaludis C7]
gi|159886171|gb|ABX01108.1| KH type 1 domain protein [Methanococcus maripaludis C6]
Length = 184
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ EG +++ +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVSIYSTEDQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I I + + + + ++G + + +E LT +I V
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSGGKSRRYIEELTSTHISV 131
>gi|383620249|ref|ZP_09946655.1| putative RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|448695968|ref|ZP_21697622.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|445784079|gb|EMA34899.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
Length = 185
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ V T DP + +K +++R + R +A+++L++EM D++ I RNK
Sbjct: 40 GSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEEALRLLENEMMMFDVVDIDAAARNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ + L+G T + +E LTG +++
Sbjct: 97 DLQRHKGRLIGEGGRTRELMEELTGASVVI 126
>gi|448337651|ref|ZP_21526726.1| RNA-processing protein [Natrinema pallidum DSM 3751]
gi|445625228|gb|ELY78594.1| RNA-processing protein [Natrinema pallidum DSM 3751]
Length = 185
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|361131250|gb|EHL02948.1| putative Ribosomal RNA assembly protein KRR1 [Glarea lozoyensis
74030]
Length = 119
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 215 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 251
K K KK YTPFPPP + SK+D +ESGEYFL ++ KE
Sbjct: 18 KWKSKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKE 54
>gi|397771874|ref|YP_006539420.1| KH domain protein [Natrinema sp. J7-2]
gi|397680967|gb|AFO55344.1| KH domain protein [Natrinema sp. J7-2]
Length = 182
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 28 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 84
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 85 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 123
>gi|261402309|ref|YP_003246533.1| putative RNA-processing protein [Methanocaldococcus vulcanius M7]
gi|261369302|gb|ACX72051.1| KH domain protein [Methanocaldococcus vulcanius M7]
Length = 216
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 72 KGALK-----EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
KG++K E GV E++ +G++T+ T K +D + KA+D++R + R A++
Sbjct: 29 KGSVKKAIEEELGVKLEID-EDGTVTIYGTDKQKDQLAVWKAKDIVRAIGRGFNPEIALR 87
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
++ D+ +II I + ++ + + ++G + + +E LTG + V
Sbjct: 88 LVSDDYVLEIIDIEDYASSENSLRRLKGRVIGKEGKSRRYIEGLTGANVSV 138
>gi|448342159|ref|ZP_21531111.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|448346687|ref|ZP_21535569.1| RNA-processing protein [Natrinema altunense JCM 12890]
gi|445626150|gb|ELY79499.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|445631949|gb|ELY85172.1| RNA-processing protein [Natrinema altunense JCM 12890]
Length = 185
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|448307133|ref|ZP_21497034.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
gi|445596680|gb|ELY50765.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
Length = 185
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + + DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAIDSVG---DPVRGLKAPDIVRAIGRGFAPEAALRLLEDEMMMFDLVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|336253009|ref|YP_004596116.1| KH domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336998|gb|AEH36237.1| KH domain protein [Halopiger xanaduensis SH-6]
Length = 185
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDEMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEEGRTRELMEELTGADVVI 126
>gi|134046036|ref|YP_001097522.1| putative RNA-processing protein [Methanococcus maripaludis C5]
gi|132663661|gb|ABO35307.1| KH, type 1, domain protein [Methanococcus maripaludis C5]
Length = 184
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ EG + + +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVNIYSTEGQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I I + + + + ++G + + + +E LT +I V
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSSGKSRRYIEELTSTHISV 131
>gi|255566716|ref|XP_002524342.1| conserved hypothetical protein [Ricinus communis]
gi|223536433|gb|EEF38082.1| conserved hypothetical protein [Ricinus communis]
Length = 135
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNK 146
PQAIKIL DEMQ DIIKIGNLVR K
Sbjct: 61 PQAIKILHDEMQWDIIKIGNLVRTK 85
>gi|433589530|ref|YP_007279026.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|448335674|ref|ZP_21524813.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
gi|433304310|gb|AGB30122.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|445616197|gb|ELY69826.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
Length = 185
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|284166911|ref|YP_003405190.1| KH domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016566|gb|ADB62517.1| KH domain protein [Haloterrigena turkmenica DSM 5511]
Length = 185
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAVGRGFAPEAALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|448381536|ref|ZP_21561656.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
gi|445663023|gb|ELZ15783.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
Length = 185
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|313124877|ref|YP_004035141.1| universal archaeal kh domain-containing protein [Halogeometricum
borinquense DSM 11551]
gi|448287286|ref|ZP_21478499.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
gi|312291242|gb|ADQ65702.1| universal archaeal KH domain protein [Halogeometricum borinquense
DSM 11551]
gi|445572494|gb|ELY27032.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
Length = 180
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+IR + R A+ +LDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVTGMVAPDVIRAVGRGFTPEAALSLLDDEMRAFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQ 178
N T + +E LTG ++++
Sbjct: 109 NGRTRELMEELTGAEVVIR 127
>gi|448298866|ref|ZP_21488885.1| RNA-processing protein [Natronorubrum tibetense GA33]
gi|445589581|gb|ELY43810.1| RNA-processing protein [Natronorubrum tibetense GA33]
Length = 185
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 138
V +++ GS+ V T DP + +KA D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFAPETALRLLEDDMIMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RN +++ L+G T + +E L+G +++
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEGGRTRELMEELSGANVVI 126
>gi|448727052|ref|ZP_21709429.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
gi|445792252|gb|EMA42863.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
Length = 182
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DII 137
GV +++ GS+ + + DP +K D++R + R A+ +LDDEM ++I
Sbjct: 30 GVRLDIDSETGSVGIESVE---DPVQGLKGPDIVRAIGRGFAPEDALTLLDDEMMLLELI 86
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RN+ +++ L+G N T + + L+G ++++
Sbjct: 87 DIEAATRNETDLTRKKGRLIGENGRTRELMAELSGAFVVI 126
>gi|408381805|ref|ZP_11179353.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
gi|407815736|gb|EKF86306.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
Length = 191
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ GS+ +S +DP + KAR +++ + R A+K++DD++ +II + +
Sbjct: 36 IEVDSEAGSIAISPQEDAKDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLPD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
V ++K+ ++++ ++G + T + +TG Y+
Sbjct: 96 YVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYV 130
>gi|110668939|ref|YP_658750.1| RNA-processing protein [Haloquadratum walsbyi DSM 16790]
gi|385804524|ref|YP_005840924.1| ribosomal RNA assembly protein [Haloquadratum walsbyi C23]
gi|109626686|emb|CAJ53153.1| KH domain protein [Haloquadratum walsbyi DSM 16790]
gi|339730016|emb|CCC41321.1| KH domain protein [Haloquadratum walsbyi C23]
Length = 180
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D++R + R A+ ILDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVRGMLAPDIVRAIGRGFTPTAALSILDDEMRTFELIDLDAHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQ 178
N T + +E LTG ++++
Sbjct: 109 NGRTRELMEELTGAEVVIR 127
>gi|45358168|ref|NP_987725.1| RNA-processing protein [Methanococcus maripaludis S2]
gi|340623859|ref|YP_004742312.1| putative RNA-processing protein [Methanococcus maripaludis X1]
gi|44920925|emb|CAF30161.1| Conserved Hypothetical protein [Methanococcus maripaludis S2]
gi|339904127|gb|AEK19569.1| putative RNA-processing protein [Methanococcus maripaludis X1]
Length = 184
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ GV E++ EG + + +T + +DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 DLGVELEID-SEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I I + + + + ++G + + + +E LT +I V
Sbjct: 91 IDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISV 131
>gi|410720327|ref|ZP_11359683.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
gi|410601109|gb|EKQ55629.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
Length = 191
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
S +++ GS+ +S DP + KAR +++ + R A+K++DD++ +II +
Sbjct: 35 SIDVDSEAGSIAISPQEDAEDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLP 94
Query: 141 NLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
+ V ++K+ ++++ ++G + T + +TG Y+
Sbjct: 95 DYVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYV 130
>gi|448606648|ref|ZP_21659074.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445738856|gb|ELZ90368.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 180
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVI 126
>gi|448622363|ref|ZP_21669057.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
gi|445754445|gb|EMA05850.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
Length = 180
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVI 126
>gi|448366616|ref|ZP_21554739.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
gi|445654071|gb|ELZ06927.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
Length = 186
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|448560526|ref|ZP_21633974.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|448582774|ref|ZP_21646278.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
gi|445722176|gb|ELZ73839.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|445732422|gb|ELZ84005.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
Length = 180
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVI 126
>gi|332157797|ref|YP_004423076.1| putative RNA-processing protein [Pyrococcus sp. NA2]
gi|331033260|gb|AEC51072.1| putative RNA-processing protein [Pyrococcus sp. NA2]
Length = 220
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T+DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 75 GEVWITSTKETKDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ R ++G T + +E ++G + V
Sbjct: 135 NALPRVRGRIIGRKGRTRQIIEEMSGASVSV 165
>gi|448611239|ref|ZP_21661873.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
gi|445743671|gb|ELZ95152.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
Length = 180
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVI 126
>gi|257052348|ref|YP_003130181.1| RNA-processing protein [Halorhabdus utahensis DSM 12940]
gi|256691111|gb|ACV11448.1| KH type 1 domain protein [Halorhabdus utahensis DSM 12940]
Length = 182
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K D+++ + R A+++LD D M D+I I + RN + + L+G
Sbjct: 49 DPVLGLKGPDIVKAIGRGFSPEAALRLLDGDMMMFDVIDIDAVARNPNDLKRLKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + +E LTG +++
Sbjct: 109 NGRTRELMEDLTGADVVI 126
>gi|389845633|ref|YP_006347872.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|448616749|ref|ZP_21665459.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|388242939|gb|AFK17885.1| putative RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|445751404|gb|EMA02841.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
Length = 180
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVI 126
>gi|433430164|ref|ZP_20407477.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|448543955|ref|ZP_21625416.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|448551115|ref|ZP_21629257.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|448558510|ref|ZP_21633067.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|448573609|ref|ZP_21641092.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|448597756|ref|ZP_21654681.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
gi|432194607|gb|ELK51214.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|445706097|gb|ELZ57984.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|445710671|gb|ELZ62469.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|445712262|gb|ELZ64044.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|445718515|gb|ELZ70205.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|445739217|gb|ELZ90726.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
Length = 180
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVI 126
>gi|292654312|ref|YP_003534209.1| RNA-binding Pno1-like protein [Haloferax volcanii DS2]
gi|448293856|ref|ZP_21483959.1| RNA-processing protein [Haloferax volcanii DS2]
gi|291371752|gb|ADE03979.1| RNA-binding Pno1 homolog [Haloferax volcanii DS2]
gi|445569777|gb|ELY24348.1| RNA-processing protein [Haloferax volcanii DS2]
Length = 180
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVI 126
>gi|448389236|ref|ZP_21565648.1| RNA-processing protein [Haloterrigena salina JCM 13891]
gi|445669140|gb|ELZ21755.1| RNA-processing protein [Haloterrigena salina JCM 13891]
Length = 185
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAVGRGFAPDAALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|336122118|ref|YP_004576893.1| KH domain-containing protein [Methanothermococcus okinawensis IH1]
gi|334856639|gb|AEH07115.1| KH domain protein [Methanothermococcus okinawensis IH1]
Length = 184
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV ++ +G +T+ +T + +DP KA+D+IR + R +A+K++ D+ +
Sbjct: 31 KELGVEVVID-EDGEITIFSTEEQKDPLATWKAKDIIRAIGRGFNPEKALKLISDDYILE 89
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT 171
II I + + + + ++G + + +E LT
Sbjct: 90 IIDITDYANSDNAIRRLKGRVIGSGGKSRRYIEDLT 125
>gi|448350955|ref|ZP_21539765.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
gi|445635143|gb|ELY88314.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMVLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|304315141|ref|YP_003850288.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
gi|302588600|gb|ADL58975.1| predicted RNA-binding protein [Methanothermobacter marburgensis
str. Marburg]
Length = 188
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G++T+ + DP KAR+++R + R A+++LDD++ DIIKI +
Sbjct: 36 LEIDSETGAVTLIPHDELDDPLSPWKARNIVRAIGRGFNPEVALRLLDDDVALDIIKITD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILV--QILMVKKELEKDPALANENWD 198
V ++K+ +++ ++G T + + +TG I V + + + E EK ++A E +
Sbjct: 96 YVGKSKKAIARQKGRVIGRGGITRRIIHDMTGVDISVYGKTVALIGEFEK-LSVAREAVE 154
Query: 199 RFLPKFKKKNV 209
L + K+V
Sbjct: 155 MILNGARHKSV 165
>gi|448330229|ref|ZP_21519514.1| RNA-processing protein [Natrinema versiforme JCM 10478]
gi|445612134|gb|ELY65869.1| RNA-processing protein [Natrinema versiforme JCM 10478]
Length = 185
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+++M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLENDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E LTG +++
Sbjct: 88 IDAASRNKTDMKRKKGRLIGEGGRTRELMEELTGADVVI 126
>gi|409731003|ref|ZP_11272554.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|448722025|ref|ZP_21704566.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|445790428|gb|EMA41090.1| RNA-processing protein [Halococcus hamelinensis 100A6]
Length = 182
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKE 147
GS+ V T DP +K D+++ + R +A+ +LDD+ M ++ + + RNK
Sbjct: 40 GSVGVETVG---DPVQGLKGPDIVKAIGRGFAPDEALTLLDDDVMTLQVVDVESATRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E L+G +++
Sbjct: 97 DLTRQKGRLIGENGRTRQLMEELSGASVVI 126
>gi|448363887|ref|ZP_21552482.1| RNA-processing protein [Natrialba asiatica DSM 12278]
gi|445645471|gb|ELY98475.1| RNA-processing protein [Natrialba asiatica DSM 12278]
Length = 186
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +K +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKGPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK +++ L+G T + +E L+G +++
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVI 126
>gi|315230264|ref|YP_004070700.1| RNA-binding protein [Thermococcus barophilus MP]
gi|315183292|gb|ADT83477.1| RNA-binding protein [Thermococcus barophilus MP]
Length = 222
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +S+T KT DP + KARD++ + R +A ++ ++ +II + +
Sbjct: 70 IEVDSETGEVFISSTEKTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEIINLSD 129
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILV 177
++ E+ + R ++G T + +E ++G I V
Sbjct: 130 IIIGNEKNALPRIRGRIIGRKGRTREIIEEMSGADISV 167
>gi|14520809|ref|NP_126284.1| RNA-processing protein [Pyrococcus abyssi GE5]
gi|5458025|emb|CAB49515.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
gi|380741351|tpe|CCE69985.1| TPA: putative RNA-processing protein [Pyrococcus abyssi GE5]
Length = 221
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T DP + KARD+++ + R +A ++L++ +II + +++ E+
Sbjct: 76 GEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 135
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ R ++G T + +E ++G + V
Sbjct: 136 NALPRIRGRIIGRKGRTRQIIEEMSGASVSV 166
>gi|389852869|ref|YP_006355103.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
gi|388250175|gb|AFK23028.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
Length = 221
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++TR+T DP + KARD++ + R +A ++L++ +I+ + +
Sbjct: 69 IEVDSETGEVWITSTRETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIVNLTD 128
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILV 177
++ E+ + R ++G T + +E ++G + V
Sbjct: 129 IIIGDEKKALPRVRGRIIGRKGRTRQIIEEMSGASVSV 166
>gi|375084290|ref|ZP_09731296.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
gi|374741050|gb|EHR77482.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
Length = 220
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T KT DP + KARD++ + R +A ++L++ +++ + +
Sbjct: 68 IEVDSQTGEVFITSTEKTDDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVDLTD 127
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+V E+ + R ++G T + +E ++G I V
Sbjct: 128 VVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGTDISV 165
>gi|300710112|ref|YP_003735926.1| KH domain-containing protein [Halalkalicoccus jeotgali B3]
gi|448297116|ref|ZP_21487164.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
gi|299123795|gb|ADJ14134.1| KH domain protein [Halalkalicoccus jeotgali B3]
gi|445580298|gb|ELY34684.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
Length = 187
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ G++ V T DP +K +++R + R A+++L DD M D+I
Sbjct: 31 VRLDVDSENGAVQVETVG---DPVTGLKGPEIVRAIGRGFAPEDAMELLEDDVMLFDLID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK+ +++ L+G T + +E L+G +++
Sbjct: 88 IDAAARNKKDLQRKKGRLIGEGGRTRQIMEELSGANVVI 126
>gi|242399085|ref|YP_002994509.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
gi|242265478|gb|ACS90160.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
Length = 220
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T +T DP + KARD++ + R +A ++L++ +++++ +++ ER
Sbjct: 75 GEVFITSTEETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVELTDIIIGNER 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ R ++G T + +E ++G I V
Sbjct: 135 NALPRVRGRIIGRKGRTREIIEEMSGTEISV 165
>gi|14591347|ref|NP_143425.1| RNA-processing protein [Pyrococcus horikoshii OT3]
gi|159794750|pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
gi|294979443|pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
gi|3257995|dbj|BAA30678.1| 219aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 219
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 74 GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ R ++G T + +E ++G + V
Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSV 164
>gi|15679024|ref|NP_276141.1| RNA-processing protein [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2622107|gb|AAB85502.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 191
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G++T+ + DP KAR ++R + R A+++LDD++ ++IKI +
Sbjct: 39 LEIDSETGAVTLIPQDELEDPLSPWKARHIVRAIGRGFNPEVALRLLDDDVALEVIKITD 98
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILV--QILMVKKELEKDPALANENWD 198
V ++K+ +++ ++G T + + +TG I V + + + E EK A+A E +
Sbjct: 99 YVGKSKKAIARQKGRVIGREGITRRIIHDMTGVDISVYGKTVSLIGEFEK-LAVAREAIE 157
Query: 199 RFLPKFKKKNV 209
L + K+V
Sbjct: 158 MILNGARHKSV 168
>gi|448578897|ref|ZP_21644256.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|448589289|ref|ZP_21649448.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
gi|445724825|gb|ELZ76452.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|445735717|gb|ELZ87265.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
Length = 180
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LD EM ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMLLLDQEMAMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+++ L+G N T + +E LTG +++
Sbjct: 97 DMRRKKGRLIGENGRTRELMEELTGADVVI 126
>gi|76801154|ref|YP_326162.1| RNA-processing protein [Natronomonas pharaonis DSM 2160]
gi|76557019|emb|CAI48594.1| KH domain protein [Natronomonas pharaonis DSM 2160]
Length = 187
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V + DP + +K D+++ + R +A+++L+D+MQ +I+
Sbjct: 31 VRLDIDSETGSVRVESVG---DPILGLKGPDIVKAIGRGFAPEEALRLLEDDMQLFEIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK+ +++ L+G + T + + L+G +++
Sbjct: 88 IDAATRNKKDLRRKKGRLIGESGRTRELMAELSGADVVI 126
>gi|18977952|ref|NP_579309.1| RNA-processing protein [Pyrococcus furiosus DSM 3638]
gi|397652073|ref|YP_006492654.1| RNA-processing protein [Pyrococcus furiosus COM1]
gi|18893724|gb|AAL81704.1| hypothetical protein PF1580 [Pyrococcus furiosus DSM 3638]
gi|393189664|gb|AFN04362.1| RNA-processing protein [Pyrococcus furiosus COM1]
Length = 221
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T++T DP + KARD++ + R +A ++L++ +II + +
Sbjct: 69 IEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTD 128
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILV 177
++ E+ + R ++G T + +E ++G I V
Sbjct: 129 IIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISV 166
>gi|448417245|ref|ZP_21579263.1| RNA-processing protein [Halosarcina pallida JCM 14848]
gi|445678468|gb|ELZ30961.1| RNA-processing protein [Halosarcina pallida JCM 14848]
Length = 180
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D++R + R A+ +LDD+M+ ++I + RNK +++ L+G
Sbjct: 49 DPVAGMLAPDIVRAIGRGFTPEAALSLLDDDMRTFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQ 178
N T + +E L+G ++++
Sbjct: 109 NGRTRELMEELSGADVVIR 127
>gi|448732133|ref|ZP_21714415.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
gi|445805045|gb|EMA55272.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
Length = 182
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K +++ + R A+ +LDDEM D++ + RNK +++ L+G
Sbjct: 49 DPVLGLKGPEIVEAIGRGFAPEDALVLLDDEMMMFDLVDVDAATRNKNDLERKKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + + LTG +++
Sbjct: 109 NGRTRELMVELTGAEVVI 126
>gi|84490126|ref|YP_448358.1| RNA-processing protein [Methanosphaera stadtmanae DSM 3091]
gi|84373445|gb|ABC57715.1| predicted RNA-binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 233
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 147
G++ +S+T +T DP I KAR +I+ + R A+ + +D++ +II + + V ++K+
Sbjct: 43 GNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALTLENDDLILEIINLQDYVGKSKK 102
Query: 148 RFVKRRQHLVGPNSST 163
V+++ ++G N T
Sbjct: 103 ALVRQKGRIIGKNGRT 118
>gi|337283842|ref|YP_004623316.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
gi|334899776|gb|AEH24044.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
Length = 220
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 75 GEVWITSTKETNDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDMIIGNEK 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ R ++G T + +E ++G + V
Sbjct: 135 NALPRVRGRIIGRKGRTREIIEEMSGASVSV 165
>gi|240103481|ref|YP_002959790.1| putative RNA-processing protein [Thermococcus gammatolerans EJ3]
gi|239911035|gb|ACS33926.1| RNA-binding protein, containing KH domain [Thermococcus
gammatolerans EJ3]
Length = 234
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 39/70 (55%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
G E++ G + ++ T+KT+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITATKKTKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 139 IGNLVRNKER 148
+ ++V E+
Sbjct: 127 LTDIVVGNEK 136
>gi|448731493|ref|ZP_21713792.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
gi|445791821|gb|EMA42440.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
Length = 182
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K +++ + R A+ +LDDEM +++ + RNK +++ L+G
Sbjct: 49 DPMLGLKGPEIVEAIGRGFAPEDALALLDDEMMMLELVDVDAATRNKNDLERKKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + + LTG +++
Sbjct: 109 NGRTRELMAELTGAEVVI 126
>gi|344213153|ref|YP_004797473.1| putative RNA-processing protein/KH type 1 domain-containing protein
[Haloarcula hispanica ATCC 33960]
gi|343784508|gb|AEM58485.1| putative RNA-processing protein / KH type 1 domain protein
[Haloarcula hispanica ATCC 33960]
Length = 179
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 28 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 84
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I RNK F +++ L+G T + ++ L+G +++
Sbjct: 85 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVI 123
>gi|55379140|ref|YP_136990.1| RNA-processing protein [Haloarcula marismortui ATCC 43049]
gi|448664456|ref|ZP_21684259.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|448683897|ref|ZP_21692517.1| RNA-processing protein [Haloarcula japonica DSM 6131]
gi|55231865|gb|AAV47284.1| unknown [Haloarcula marismortui ATCC 43049]
gi|445775101|gb|EMA26115.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|445783470|gb|EMA34299.1| RNA-processing protein [Haloarcula japonica DSM 6131]
Length = 182
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP +K D+++ + R A+ +L DD M ++I I RNK F +++ L+G
Sbjct: 49 DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELIDIEAASRNKNDFRRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
T + ++ L+G +++
Sbjct: 109 GGRTRELMQELSGAAVVI 126
>gi|448655130|ref|ZP_21681982.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|448680413|ref|ZP_21690730.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
gi|445765579|gb|EMA16717.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|445768857|gb|EMA19934.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
Length = 182
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP +K D+++ + R A+ +L DD M ++I I RNK F +++ L+G
Sbjct: 49 DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELIDIEAASRNKNDFRRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
T + ++ L+G +++
Sbjct: 109 GGRTRELMQELSGAAVVI 126
>gi|448457874|ref|ZP_21595879.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
gi|445810175|gb|EMA60206.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
Length = 180
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP ++ A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAVMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRQKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + LE L+G ++V
Sbjct: 109 NGRTRELLEELSGANVVV 126
>gi|345006033|ref|YP_004808886.1| KH domain-containing protein [halophilic archaeon DL31]
gi|344321659|gb|AEN06513.1| KH domain protein [halophilic archaeon DL31]
Length = 180
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDII 137
GV +++ +GS+ + T DP + A D+++ + R A+K+L+ EM + +I
Sbjct: 30 GVRLDIDSEDGSVGIETVG---DPIAAMDAPDIVKAIGRGFKPESALKLLESEMRRFTLI 86
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ RNK +++ L+G + T + +E +G +++
Sbjct: 87 DLNEQTRNKNDLQRQKGRLIGEDGRTRELMEQFSGAEVVI 126
>gi|296109403|ref|YP_003616352.1| KH domain protein [methanocaldococcus infernus ME]
gi|295434217|gb|ADG13388.1| KH domain protein [Methanocaldococcus infernus ME]
Length = 208
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
+G++T+ ++ DP + KA+D+++ ++R A+++L D+ +II I + +++
Sbjct: 49 DGTVTI-YSKNNEDPLALWKAKDIVKAIARGFNPEIALRLLSDDYVLEIINIEDYAKSEN 107
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+ + ++G + + +E LTG + V
Sbjct: 108 SLRRLKGRVIGKEGKSRRYIEELTGASVSV 137
>gi|315425458|dbj|BAJ47121.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484294|dbj|BAJ49948.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 201
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTR---KTRDPYII 105
SSF P+ R L VK + + GVS +++ EG++ +S + + DP +
Sbjct: 13 SSFVVNIPRERVGVLIGEGGSVKAEIERLLGVSLQVDSSEGTVVISLAKPVEEGGDPASL 72
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSSTL 164
KARD++ + R +A+K+++D +I + + V + + R + ++G T
Sbjct: 73 FKARDIVTAIGRGFSPEKALKLVEDGTVLTVIDLTDYVGDSPNHLARVKARVIGTQGKTR 132
Query: 165 KALE 168
+ +E
Sbjct: 133 RIIE 136
>gi|448441692|ref|ZP_21589299.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|448462610|ref|ZP_21597809.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
gi|445688728|gb|ELZ40979.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|445818174|gb|EMA68037.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
Length = 180
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + LE L+G ++V
Sbjct: 109 NGRTRELLEELSGANVVV 126
>gi|448494891|ref|ZP_21609706.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
gi|445689114|gb|ELZ41360.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
Length = 180
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + LE L+G ++V
Sbjct: 109 NGRTRELLEELSGANVVV 126
>gi|289596955|ref|YP_003483651.1| KH domain protein [Aciduliprofundum boonei T469]
gi|289534742|gb|ADD09089.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 182
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV ++N +G + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 30 GVKMDINSNDGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 87
Query: 139 IGNLVRNKE-RFVKRRQHLVGPNSSTLKALEILTGCYILV 177
I +E R R ++G N T + +E ++G I V
Sbjct: 88 IKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISV 127
>gi|124028254|ref|YP_001013574.1| putative RNA-processing protein [Hyperthermus butylicus DSM 5456]
gi|123978948|gb|ABM81229.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 192
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPN 160
PY+++KA++ +R ++ +A+++LDD+ +I + V + ++R + ++G
Sbjct: 59 PYMVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEK 118
Query: 161 SSTLKALEILTGCYI 175
K +E +TG YI
Sbjct: 119 GRARKTIEEMTGTYI 133
>gi|223478282|ref|YP_002582500.1| RNA-binding protein [Thermococcus sp. AM4]
gi|214033508|gb|EEB74335.1| RNA-binding protein, containing KH domain [Thermococcus sp. AM4]
Length = 232
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
G E++ G + +++T++T+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITSTKETKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 139 IGNLVRNKER 148
+ ++V E+
Sbjct: 127 LTDIVVGNEK 136
>gi|325960092|ref|YP_004291558.1| KH domain-containing protein [Methanobacterium sp. AL-21]
gi|325331524|gb|ADZ10586.1| KH domain protein [Methanobacterium sp. AL-21]
Length = 192
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 147
GS++VS T T DP + K+R +++ + R ++K+L DE +II + + V ++K+
Sbjct: 43 GSISVSPTEATEDPLAVWKSRYIVKAIGRGFNPEISLKLLSDETLLEIINLPDYVGKSKK 102
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYI 175
++++ ++G T + +TG I
Sbjct: 103 AIMRQKARIIGKEGRTKDIIIDMTGVDI 130
>gi|257076599|ref|ZP_05570960.1| putative RNA-processing protein [Ferroplasma acidarmanus fer1]
Length = 185
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFV 150
+ T + DP + A ++++ ++R +A+ + DD +Q +I I V ++ +R
Sbjct: 43 AIVTVYQKNDPLKALMALNVVQAIARGFNPEKAMLLFDDSVQLIVISIKEFVNKDAKRIK 102
Query: 151 KRRQHLVGPNSSTLKALEILTGCYI 175
+ R L+G T + +E LTG YI
Sbjct: 103 EIRGRLIGKEGHTREIIEELTGTYI 127
>gi|345560486|gb|EGX43611.1| hypothetical protein AOL_s00215g347 [Arthrobotrys oligospora ATCC
24927]
Length = 252
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 8/179 (4%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
E + TV H+ D + ID F P + ++ + P +R
Sbjct: 31 AETLSTTVESTENPLHE-----DTEMRIDEEGRPVFQPAKQSQKIYKIETRKVPVPPHRF 85
Query: 62 KYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
L+ AWP + + E+ V +NL + + +KT DP + KA D +++ +
Sbjct: 86 SPLKAAWPKIYQPIVEHLKVDVRMNLANKCVEIRNNKKTEDPGALQKAADFVKVFTLGFD 145
Query: 121 APQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
AI +L DE+ + +I ++ E + + G + T A+E T I++
Sbjct: 146 IDDAIALLRLDELYTETFEIKDVKTLQGEHLSRAIGRIAGKDGKTRFAIENATKTRIVL 204
>gi|448483379|ref|ZP_21605753.1| RNA-processing protein [Halorubrum arcis JCM 13916]
gi|448514185|ref|ZP_21616937.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|448526135|ref|ZP_21619753.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445692853|gb|ELZ45022.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|445699335|gb|ELZ51366.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445820751|gb|EMA70555.1| RNA-processing protein [Halorubrum arcis JCM 13916]
Length = 180
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILV 177
N T + +E L+G ++V
Sbjct: 109 NGRTRELIEELSGANVVV 126
>gi|20093951|ref|NP_613798.1| RNA-processing protein [Methanopyrus kandleri AV19]
gi|19886904|gb|AAM01728.1| Predicted RNA-binding protein containing KH domain) [Methanopyrus
kandleri AV19]
Length = 202
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 137
GV ++ G + + T + +DP ++KA++ + + R +A ++L +E ++I
Sbjct: 41 GVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVI 100
Query: 138 KIGNLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
+ LV RN + ++R ++G T + +E L+G + ++
Sbjct: 101 DLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIR 142
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,522,154,407
Number of Sequences: 23463169
Number of extensions: 239230984
Number of successful extensions: 1270257
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 6023
Number of HSP's that attempted gapping in prelim test: 1172515
Number of HSP's gapped (non-prelim): 52216
length of query: 341
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 198
effective length of database: 9,003,962,200
effective search space: 1782784515600
effective search space used: 1782784515600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 77 (34.3 bits)