BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019435
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74777|KRR1_SCHPO KRR1 small subunit processome component homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mis3 PE=3 SV=1
Length = 327
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/313 (55%), Positives = 217/313 (69%), Gaps = 38/313 (12%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E W
Sbjct: 14 VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
P V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71 PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------- 179
D + CDIIKIGN++RNKERFVKRRQ L+G N TLKALE+LT CYILVQ
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190
Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 213
LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 191 KGLKEVRRIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKP 250
Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
K +E K YTPFPP PSK+D +ESGEYFL + +KE KK EK+E+Q EK E +++R
Sbjct: 251 AKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKER 310
Query: 274 DAAFIPPEEPSRQ 286
AFIPPEE S++
Sbjct: 311 MKAFIPPEESSKK 323
>sp|E7QBZ1|KRR1_YEASZ KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain Zymaflore VL3) GN=KRR1 PE=3 SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|E7LRT8|KRR1_YEASV KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain VIN 13) GN=KRR1 PE=3 SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|P25586|KRR1_YEAST KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|C8Z430|KRR1_YEAS8 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3
SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|B5VEQ2|KRR1_YEAS6 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=KRR1 PE=3 SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|B3LU25|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=KRR1 PE=3 SV=1
Length = 316
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 204/305 (66%), Gaps = 40/305 (13%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------------- 179
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQ
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 180 -------------------LMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSK 217
LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNV 243
Query: 218 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 277
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R F
Sbjct: 244 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKDF 303
Query: 278 IPPEE 282
I PEE
Sbjct: 304 IAPEE 308
>sp|B4N0P7|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila
willistoni GN=dbe PE=3 SV=1
Length = 347
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/309 (50%), Positives = 204/309 (66%), Gaps = 39/309 (12%)
Query: 24 DEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+ DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ A+ E+ +
Sbjct: 13 NTDPVDNAWSLKIPAFKETDNPHGMIEESSFATLFPKYREKYLKEVWPLVEQAVGEHHLK 72
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+LVEGSM V TTRKT DPYII+KARD+I+L++RSVP QA ++L DE+ CDIIKIGN
Sbjct: 73 AELDLVEGSMVVKTTRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDEIGCDIIKIGN 132
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LV+ KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 133 LVQKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLET 192
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPF
Sbjct: 193 MNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNLSKRKQPKVKKPKKEYTPF 252
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPS 284
PP SKIDK L SGEYFL++ +K++K+ QE+Q KQAE + +R+ FIPP EEP
Sbjct: 253 PPAQPESKIDKQLASGEYFLNKEQKQAKRQQERQTKQAEAAKKQDERRNKDFIPPTEEPP 312
Query: 285 RQNSCEAED 293
+ +A D
Sbjct: 313 TGSKRKAND 321
>sp|B3N899|KRR1_DROER KRR1 small subunit processome component homolog OS=Drosophila
erecta GN=dbe PE=3 SV=1
Length = 345
Score = 285 bits (728), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 209/328 (63%), Gaps = 38/328 (11%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + E
Sbjct: 14 DPVDNAWAMKIPTFREEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAE 73
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 74 LDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 133
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------- 178
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 134 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 193
Query: 179 ---------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPP 227
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP
Sbjct: 194 NVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPP 253
Query: 228 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 287
SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S +
Sbjct: 254 SQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESASS 313
Query: 288 SCEAEDKTNDVAAMAKSLKEKAKKLRKQ 315
S + ED + K+LK K K K+
Sbjct: 314 SLKKEDGFSSSKVDVKALKAKLIKANKK 341
>sp|Q13601|KRR1_HUMAN KRR1 small subunit processome component homolog OS=Homo sapiens
GN=KRR1 PE=1 SV=4
Length = 381
Score = 284 bits (727), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/332 (48%), Positives = 214/332 (64%), Gaps = 42/332 (12%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------- 178
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 179 --------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 212
LM+K+EL KD L +++W+RFLP+FK KNV ++
Sbjct: 195 PFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKR 254
Query: 213 KVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 270
K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ +
Sbjct: 255 KEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQ 314
Query: 271 RKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 301
+R+ AFIPP+E EA +T DVA++
Sbjct: 315 EERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>sp|Q8BGA5|KRR1_MOUSE KRR1 small subunit processome component homolog OS=Mus musculus
GN=Krr1 PE=2 SV=1
Length = 380
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 200/309 (64%), Gaps = 37/309 (11%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CY++VQ
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 216
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 217 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQ 276
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 293
IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 277 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAST 336
Query: 294 KTN-DVAAM 301
+T DVAA+
Sbjct: 337 ETKIDVAAI 345
>sp|B4G9L6|KRR1_DROPE KRR1 small subunit processome component homolog OS=Drosophila
persimilis GN=dbe PE=3 SV=1
Length = 340
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/323 (47%), Positives = 207/323 (64%), Gaps = 40/323 (12%)
Query: 24 DEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+ DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ +
Sbjct: 11 NTDPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLK 70
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGN
Sbjct: 71 AELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGN 130
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------------- 178
LV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 131 LVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLET 190
Query: 179 -----------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPF 225
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPF
Sbjct: 191 MNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKSKKPKKEYTPF 250
Query: 226 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--P 283
PP SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E P
Sbjct: 251 PPAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAP 310
Query: 284 SRQNSCEAEDKTNDVAAMAKSLK 306
SR+ E K + A AK +K
Sbjct: 311 SRKRQAEDSSKVDVKALKAKLVK 333
>sp|Q9VPU8|KRR1_DROME KRR1 small subunit processome component homolog OS=Drosophila
melanogaster GN=dbe PE=1 SV=1
Length = 345
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 203/310 (65%), Gaps = 36/310 (11%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLK++E+LT CY+LVQ LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELM 211
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYFL
Sbjct: 212 KDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYFL 271
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSL 305
++ +K++K+ QE+ EKQ E +R+ F+PP E S +S + ED ++ K+L
Sbjct: 272 NQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSSSKVDVKAL 331
Query: 306 KEKAKKLRKQ 315
K K K K+
Sbjct: 332 KAKLIKANKK 341
>sp|B4JDU5|KRR1_DROGR KRR1 small subunit processome component homolog OS=Drosophila
grimshawi GN=dbe PE=3 SV=1
Length = 341
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 197/298 (66%), Gaps = 40/298 (13%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 15 EPVDNAWSLKIPTFKAEDNPHGMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L DE CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------- 178
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVLETMN 194
Query: 179 ---------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---YTPFP 226
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K + K +KP YTPFP
Sbjct: 195 NVHPIYNIKALMIKRELMKDPQLANEDWSRFLPKFKNKNISKRK-QPKSRKPKGEYTPFP 253
Query: 227 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 284
P SKIDK L SGEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E S
Sbjct: 254 PAQPESKIDKQLASGEYFLNKEQKQAKRQQERVAKQAEAAKKQDERRNKDFMPPTEDS 311
>sp|B4KF66|KRR1_DROMO KRR1 small subunit processome component homolog OS=Drosophila
mojavensis GN=dbe PE=3 SV=1
Length = 344
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 208/322 (64%), Gaps = 43/322 (13%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N G++E SSF+TLFP+YREKYL+E WP+V+ L E+ + EL+L+EGSM
Sbjct: 24 KIPAFKPEDNPHGLVEESSFATLFPKYREKYLKEVWPLVEQCLAEHHLKAELDLIEGSMV 83
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D+ CDIIKIGNLV KE+FVKR
Sbjct: 84 VKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDTGCDIIKIGNLVHKKEKFVKR 143
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 144 RQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLDTMNNVHPIYNIK 203
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDK 236
LM+K+EL KDP LA E+W RFLPKFK KN+ ++K +K YTPFPP SKIDK
Sbjct: 204 ALMIKRELMKDPKLAGEDWSRFLPKFKNKNISKRKQPKNKKPKKEYTPFPPQQPESKIDK 263
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE----PSRQNSCEAE 292
L +GEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E PSR+ + AE
Sbjct: 264 QLATGEYFLNKEQKQAKRQQERTAKQAEAAKKQDERRNKDFVPPTEDTPGPSRKRA--AE 321
Query: 293 DKTNDVAAM-AKSLKEKAKKLR 313
D DV A+ AK +K KK R
Sbjct: 322 DNKVDVQALKAKLMKANKKKER 343
>sp|Q3B7L9|KRR1_BOVIN KRR1 small subunit processome component homolog OS=Bos taurus
GN=KRR1 PE=2 SV=2
Length = 382
Score = 281 bits (719), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 193/289 (66%), Gaps = 36/289 (12%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQ------------------------------- 178
VKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIY 217
Query: 179 ---ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 233
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+
Sbjct: 218 NIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 277
Query: 234 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 278 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>sp|B4P2Y8|KRR1_DROYA KRR1 small subunit processome component homolog OS=Drosophila
yakuba GN=dbe PE=3 SV=1
Length = 344
Score = 277 bits (708), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 148/309 (47%), Positives = 202/309 (65%), Gaps = 39/309 (12%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGVVEESSFATLFPKYRERYLKEVWPLVEQCLSEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQ----------------------------------ILMVKKELE 187
+TLK++E+LT CY+LVQ LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYNIKALMIKRELM 211
Query: 188 KDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFL 245
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYFL
Sbjct: 212 KDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYFL 271
Query: 246 SERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN---DVAAMA 302
++ +K++K+ Q + EKQ E +R+ F+PP E S +S + ED ++ DV A+
Sbjct: 272 NQEQKQAKRNQGRTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSTKVDVKALK 331
Query: 303 KSLKEKAKK 311
L + KK
Sbjct: 332 AKLIKANKK 340
>sp|B3MM49|KRR1_DROAN KRR1 small subunit processome component homolog OS=Drosophila
ananassae GN=dbe PE=3 SV=1
Length = 343
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 189/286 (66%), Gaps = 36/286 (12%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N GM+E SSF+TLFP+YRE+YL+E WP+V+ + E+ + EL+LVEGSM
Sbjct: 23 KIPSFKPEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCVAEHHLKAELDLVEGSMV 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKR
Sbjct: 83 VKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQ---------------------------------- 178
RQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 143 RQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVVETMNNVHPIYNIK 202
Query: 179 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDK 236
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFPP SK+ K
Sbjct: 203 ALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKAKKEYTPFPPAQPESKVGK 262
Query: 237 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 282
L SGEYFL++ +K++K+ QE+ KQA+ +R+ F+PP E
Sbjct: 263 QLASGEYFLNKEQKQAKRQQERSAKQADAAKRQDERRNKDFVPPTE 308
>sp|B4LTY6|KRR1_DROVI KRR1 small subunit processome component homolog OS=Drosophila
virilis GN=dbe PE=3 SV=1
Length = 343
Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 210/336 (62%), Gaps = 40/336 (11%)
Query: 18 DKPKPWDEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
D P +P + W K+ F N G++E SSF+TLFP+YREKYL+E WP+V+ +
Sbjct: 7 DGPTKQSTEPVDNAWSLKIPTFKAEDNPHGLVEESSFATLFPKYREKYLKEVWPLVQQCV 66
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CD
Sbjct: 67 AEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCD 126
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ----------------- 178
IIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQ
Sbjct: 127 IIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVR 186
Query: 179 -----------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP 221
LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K
Sbjct: 187 DIVLETMNNVHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKNKKPK 246
Query: 222 --YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 279
YTPFPP SKIDK L +GEYFL++ +K++KK QE+ KQAE + +R+ F+P
Sbjct: 247 KEYTPFPPAQPESKIDKQLATGEYFLNKEQKQAKKQQERSVKQAEAAKKQDERRNKDFVP 306
Query: 280 PEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 313
P E PS+ AE DV A+ L + KK R
Sbjct: 307 PTEDAPSQSRKRPAETSKVDVDALKAKLMKANKKNR 342
>sp|Q54UU6|KRR1_DICDI KRR1 small subunit processome component homolog OS=Dictyostelium
discoideum GN=krr1 PE=3 SV=1
Length = 374
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 176/276 (63%), Gaps = 36/276 (13%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+ + SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L+EGSMTV+TT+K DP I
Sbjct: 54 LYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAI 113
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLK
Sbjct: 114 LKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLK 173
Query: 166 ALEILTGCYILVQI----------------------------------LMVKKELEKDPA 191
A+E+LT CY+LVQ LM+K+ELEKD
Sbjct: 174 AIELLTKCYVLVQGNTVSSIGPWNGLVQVRKIVEDCLKNIHPIYNIKELMIKRELEKDET 233
Query: 192 LANENWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERK 249
L NENW+R+LP+FKK N +KK K+K + PF PP P K D +ESGEYF SE K
Sbjct: 234 LKNENWERYLPQFKKTNQNKKKKVQKKKKDRDAAPFAPPQLPRKEDLAMESGEYFASEEK 293
Query: 250 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 285
K K +++ K AE + K +R + I P E R
Sbjct: 294 KRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDR 329
>sp|Q57885|Y443_METJA KH domain-containing protein MJ0443 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0443 PE=4 SV=1
Length = 227
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KARD++R + R A+K++ DE +
Sbjct: 42 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLE 100
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
+I I + + + + ++G + + +E LTG + V
Sbjct: 101 VIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSV 142
>sp|Q1DQZ5|PNO1_COCIM Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain
RS) GN=PNO1 PE=3 SV=1
Length = 255
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D D ++D F P G + + P +R L+ AWP + L E+ +
Sbjct: 51 DTDMHVDEEGRPLFTPITATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQV 110
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D I+ + AI +L D++ + +I +
Sbjct: 111 RMNIKSKAVELRTSKNTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD 170
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALE 168
+ N E + + G + T A+E
Sbjct: 171 VKPLNGEHLGRAIGRIAGKDGKTKFAIE 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,263,637
Number of Sequences: 539616
Number of extensions: 5871929
Number of successful extensions: 32222
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 863
Number of HSP's that attempted gapping in prelim test: 27230
Number of HSP's gapped (non-prelim): 3658
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)