Query 019435
Match_columns 341
No_of_seqs 245 out of 465
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tua_A Hypothetical protein AP 100.0 3.8E-39 1.3E-43 290.2 9.8 127 52-178 6-134 (191)
2 2e3u_A PH-DIM2P, hypothetical 100.0 1.3E-30 4.4E-35 238.4 10.1 128 51-178 35-165 (219)
3 2jvz_A KH type-splicing, FAR u 98.1 4E-06 1.4E-10 70.5 5.7 111 51-178 3-127 (164)
4 1j4w_A FUSE binding protein; s 98.0 7.6E-06 2.6E-10 70.2 6.4 115 50-178 3-140 (174)
5 2anr_A Neuro-oncological ventr 98.0 1.5E-05 5.1E-10 68.4 7.8 118 48-178 4-140 (178)
6 3krm_A Insulin-like growth fac 97.8 4.3E-05 1.5E-09 64.5 7.8 110 48-178 1-121 (163)
7 2jzx_A Poly(RC)-binding protei 97.4 0.00044 1.5E-08 58.1 8.2 110 50-178 5-125 (160)
8 2bl5_A MGC83862 protein, quaki 96.6 0.00026 8.7E-09 61.2 -0.4 27 152-178 18-44 (140)
9 1k1g_A SF1-BO isoform; splicin 96.6 0.00035 1.2E-08 59.3 -0.1 27 152-178 23-49 (131)
10 2opv_A KHSRP protein; KH domai 96.0 0.0012 4.2E-08 51.0 0.1 27 152-178 24-50 (85)
11 1dtj_A RNA-binding neurooncolo 95.9 0.0013 4.4E-08 49.4 0.1 27 152-178 13-39 (76)
12 2yqr_A KIAA0907 protein; struc 95.8 0.0012 4E-08 55.5 -0.6 27 152-178 29-55 (119)
13 1ec6_A RNA-binding protein NOV 95.3 0.0021 7.2E-08 49.8 -0.7 27 152-178 13-39 (87)
14 2qnd_A FMR1 protein; KH domain 95.3 0.039 1.3E-06 46.7 6.8 95 53-178 7-104 (144)
15 1vig_A Vigilin; RNA-binding pr 95.2 0.004 1.4E-07 46.9 0.6 27 152-178 15-41 (71)
16 1we8_A Tudor and KH domain con 95.2 0.0035 1.2E-07 50.3 0.1 27 152-178 25-51 (104)
17 1x4m_A FAR upstream element bi 95.1 0.0047 1.6E-07 48.7 0.6 27 152-178 25-51 (94)
18 2p2r_A Poly(RC)-binding protei 95.0 0.0031 1.1E-07 47.6 -0.8 27 152-178 15-41 (76)
19 1x4n_A FAR upstream element bi 94.8 0.0048 1.7E-07 48.5 -0.0 27 152-178 25-51 (92)
20 2ctm_A Vigilin; K homology typ 94.7 0.0069 2.3E-07 48.3 0.5 27 152-178 27-53 (95)
21 2ctl_A Vigilin; K homology typ 94.6 0.0076 2.6E-07 48.1 0.6 27 152-178 27-53 (97)
22 2hh2_A KH-type splicing regula 94.6 0.01 3.4E-07 48.1 1.3 27 152-178 17-43 (107)
23 2cte_A Vigilin; K homology typ 94.6 0.0078 2.7E-07 47.6 0.6 26 152-177 27-52 (94)
24 1zzk_A Heterogeneous nuclear r 94.5 0.0071 2.4E-07 46.4 0.3 27 152-178 17-43 (82)
25 2ctk_A Vigilin; K homology typ 94.5 0.0066 2.3E-07 49.1 0.1 27 152-178 27-53 (104)
26 1wvn_A Poly(RC)-binding protei 94.4 0.0059 2E-07 46.7 -0.4 27 152-178 16-42 (82)
27 1j5k_A Heterogeneous nuclear r 93.9 0.0076 2.6E-07 47.0 -0.7 27 152-178 24-50 (89)
28 2hh3_A KH-type splicing regula 93.5 0.014 4.7E-07 47.6 0.1 27 152-178 21-47 (106)
29 2axy_A Poly(RC)-binding protei 93.3 0.011 3.6E-07 44.7 -0.8 27 152-178 15-41 (73)
30 2dgr_A Ring finger and KH doma 93.3 0.016 5.6E-07 45.3 0.3 27 152-178 20-46 (83)
31 2opv_A KHSRP protein; KH domai 93.1 0.41 1.4E-05 36.7 7.9 62 50-117 14-84 (85)
32 2cpq_A FragIle X mental retard 92.3 0.14 4.7E-06 41.3 4.3 68 51-122 16-85 (91)
33 1dtj_A RNA-binding neurooncolo 92.0 0.37 1.3E-05 35.8 6.1 62 50-116 3-73 (76)
34 2cte_A Vigilin; K homology typ 91.5 0.22 7.5E-06 39.2 4.7 63 50-117 17-83 (94)
35 2p2r_A Poly(RC)-binding protei 90.1 0.9 3.1E-05 33.9 6.7 63 50-117 5-73 (76)
36 2jzx_A Poly(RC)-binding protei 89.6 0.048 1.7E-06 45.6 -0.8 27 152-178 15-41 (160)
37 1ec6_A RNA-binding protein NOV 89.4 1 3.6E-05 34.5 6.8 62 51-117 4-74 (87)
38 1we8_A Tudor and KH domain con 89.3 0.65 2.2E-05 37.0 5.7 63 51-118 16-86 (104)
39 1wvn_A Poly(RC)-binding protei 89.2 1.2 4E-05 33.8 6.9 63 50-117 6-74 (82)
40 3krm_A Insulin-like growth fac 88.3 0.069 2.3E-06 44.8 -0.8 27 152-178 13-39 (163)
41 1j5k_A Heterogeneous nuclear r 87.9 1.2 4.2E-05 34.3 6.3 64 49-117 13-82 (89)
42 2ctj_A Vigilin; K homology typ 87.1 0.12 4.2E-06 41.2 0.1 27 152-178 27-54 (95)
43 1x4m_A FAR upstream element bi 86.6 0.99 3.4E-05 35.3 5.1 65 49-118 14-86 (94)
44 2hh3_A KH-type splicing regula 86.1 2.1 7.2E-05 34.6 7.0 63 50-117 11-79 (106)
45 1x4n_A FAR upstream element bi 84.9 1.8 6.1E-05 33.7 5.8 62 51-117 16-83 (92)
46 3u1k_A Polyribonucleotide nucl 84.9 0.14 4.9E-06 53.2 -0.7 27 152-178 577-603 (630)
47 3u1k_A Polyribonucleotide nucl 83.9 1.1 3.8E-05 46.6 5.4 59 53-116 570-629 (630)
48 2dgr_A Ring finger and KH doma 81.7 2.1 7E-05 33.2 4.9 61 50-115 10-73 (83)
49 1zzk_A Heterogeneous nuclear r 81.6 2.1 7.1E-05 32.5 4.8 64 49-117 6-75 (82)
50 2pt7_G HP1451, hypothetical pr 81.5 0.48 1.6E-05 41.2 1.3 60 105-174 4-65 (152)
51 2ctk_A Vigilin; K homology typ 81.4 2.2 7.4E-05 34.3 5.1 69 50-123 17-89 (104)
52 2axy_A Poly(RC)-binding protei 81.3 5.2 0.00018 29.7 6.9 63 50-117 5-71 (73)
53 2cpq_A FragIle X mental retard 81.1 0.25 8.6E-06 39.7 -0.5 27 152-178 25-52 (91)
54 2hh2_A KH-type splicing regula 81.0 1.5 5.2E-05 35.1 4.1 63 51-118 8-79 (107)
55 1vig_A Vigilin; RNA-binding pr 80.1 2.6 8.9E-05 31.3 4.8 60 50-115 5-69 (71)
56 2jvz_A KH type-splicing, FAR u 77.6 2.7 9.2E-05 34.7 4.7 63 51-118 92-160 (164)
57 1j4w_A FUSE binding protein; s 76.6 7.9 0.00027 32.5 7.4 61 50-115 104-173 (174)
58 3gku_A Probable RNA-binding pr 75.0 0.97 3.3E-05 41.6 1.4 24 153-176 103-126 (225)
59 2ctj_A Vigilin; K homology typ 73.7 6.4 0.00022 31.1 5.7 60 51-116 18-83 (95)
60 2ctm_A Vigilin; K homology typ 72.6 6.8 0.00023 30.8 5.6 61 50-116 17-83 (95)
61 2anr_A Neuro-oncological ventr 72.6 11 0.00036 31.8 7.2 66 50-120 104-177 (178)
62 2ctl_A Vigilin; K homology typ 68.5 9.3 0.00032 30.1 5.6 64 49-117 16-86 (97)
63 2yqr_A KIAA0907 protein; struc 66.0 29 0.00098 28.8 8.3 62 53-118 15-99 (119)
64 1k1g_A SF1-BO isoform; splicin 62.2 23 0.00078 29.6 7.1 62 53-118 10-99 (131)
65 2e3u_A PH-DIM2P, hypothetical 60.9 1.4 4.7E-05 40.1 -0.7 27 152-178 44-70 (219)
66 4aid_A Polyribonucleotide nucl 60.3 1.8 6.2E-05 45.8 0.0 27 152-178 580-606 (726)
67 2ctf_A Vigilin; K homology typ 60.2 1.8 6.2E-05 34.7 -0.0 25 153-177 38-63 (102)
68 3v69_A Protein filia; RNA-bind 58.6 1.7 5.7E-05 37.8 -0.5 27 152-178 66-92 (140)
69 2ctf_A Vigilin; K homology typ 46.9 58 0.002 25.8 6.8 61 52-117 29-91 (102)
70 3iwl_A Copper transport protei 41.9 56 0.0019 22.4 5.4 30 66-95 14-44 (68)
71 4a4j_A Pacszia, cation-transpo 33.1 1E+02 0.0035 20.5 5.5 41 66-107 15-57 (69)
72 3dxs_X Copper-transporting ATP 32.3 92 0.0032 21.2 5.3 42 67-108 16-59 (74)
73 2kyz_A Heavy metal binding pro 31.2 1.1E+02 0.0039 20.1 6.1 46 66-121 14-61 (67)
74 4aid_A Polyribonucleotide nucl 27.9 16 0.00055 38.7 0.8 61 53-118 573-634 (726)
75 1tua_A Hypothetical protein AP 27.2 11 0.00038 33.6 -0.5 27 152-178 14-40 (191)
76 3n89_A Defective in GERM LINE 23.5 22 0.00076 34.9 0.8 53 116-177 11-67 (376)
77 2ooa_A E3 ubiquitin-protein li 20.8 63 0.0022 23.7 2.6 21 109-129 13-33 (52)
No 1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=100.00 E-value=3.8e-39 Score=290.22 Aligned_cols=127 Identities=14% Similarity=0.264 Sum_probs=124.0
Q ss_pred eeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHHhhcc
Q 019435 52 FSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130 (341)
Q Consensus 52 F~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAlkLLeD 130 (341)
+.++||+||.+||++.|+.+++.| +++|++|+||+.+|+|+|+||+.|+||++++||+|||+||+|||+++||++||+|
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~D 85 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE 85 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGST
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccC
Confidence 479999999999999999999999 5699999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeeccc-ccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 131 EMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 131 D~~~DIIdI~~l-v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
|++||+|+|+++ ++|++||+|++|||||++|+|+++||++|||||+|+
T Consensus 86 d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~ 134 (191)
T 1tua_A 86 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 134 (191)
T ss_dssp TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc
Confidence 999999999999 689999999999999999999999999999999999
No 2
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.96 E-value=1.3e-30 Score=238.41 Aligned_cols=128 Identities=20% Similarity=0.347 Sum_probs=119.5
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHHhhc
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAlkLLe 129 (341)
.+.+.||++|..+|...|+.+.+.| +++|++|+||+.+|+|+|+++..|+||.++++|++||++|+|||++++|..||+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll~ 114 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLN 114 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGGS
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceecc
Confidence 4489999999999999999999999 679999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeeccc-c-cCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 130 DEMQCDIIKIGNL-V-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 130 DD~~~DIIdI~~l-v-~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
||++||+|+|.++ + .+++|+.|++|||||++|+|+++||++|||+|+|+
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~ 165 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY 165 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC
Confidence 9999999999998 4 47789999999999999999999999999999999
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.07 E-value=4e-06 Score=70.49 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=81.4
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcC----
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS---- 118 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG---- 118 (341)
++.+++|......|..--+..-+.| +++++.+.++.. ++.|+|. .+|..+.+|+++|..+...
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~ii~e~~~~ 77 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILRERDQG 77 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEE-----ECHHHHHHHHHHHHHHTTCSSSC
T ss_pred EEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHHhccCC
Confidence 5678999999999999999999999 689999998643 2467775 4688999999999998773
Q ss_pred -CChHHHHHhhcccceeEE-EeecccccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 119 -VPAPQAIKILDDEMQCDI-IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 119 -F~~EqAlkLLeDD~~~DI-IdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
|++. +++...+ +.+.-.+ -....|+|||++|+|.+.|+..|||+|.|.
T Consensus 78 ~~~~~-------~~~~~~~~~~~~i~v-----p~~~~g~iIGk~G~~I~~i~~~tg~~I~i~ 127 (164)
T 2jvz_A 78 GFGDR-------NEYGSRIGGGIDVPV-----PRHSVGVVIGRSGEMIKKIQNDAGVRIQFK 127 (164)
T ss_dssp CCSSC-------SSCTTSCSSSBCCEE-----ETTTHHHHHCSSSHHHHHHHHHTCCEEEEC
T ss_pred CCCCc-------cccCCCCCceEEEEE-----ChhhccccCCCCcHhHHHHHHHHCCeEEEe
Confidence 3321 1111100 0000001 123579999999999999999999999875
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.02 E-value=7.6e-06 Score=70.16 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=81.5
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEccc-----CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChH-
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE-----GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP- 122 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~e-----GsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~E- 122 (341)
+++.+++|......|..--+..-+.| +++++.|.++... +.|+|.. ++..+.+|.++|..+.+.+...
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG-----PPDRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEE-----CHHHHHHHHHHHHHHHHHHC---
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHHhcccCC
Confidence 56789999999999999999999999 6899999997543 4677753 4789999999998887654311
Q ss_pred --------HHHHhhcccc--------eeEEEeecccccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 123 --------QAIKILDDEM--------QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 123 --------qAlkLLeDD~--------~~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.+...+.+++ ....+.|. ....|+|||++|.|.+.|+..|||+|.|.
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp---------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~ 140 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVP---------TGKTGLIIGKGGETIKSISQQSGARIELQ 140 (174)
T ss_dssp --------------------------CEEEEEEE---------TTTHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEC---------hHHcCeeECCCchHHHHHHHHHCCEEEEC
Confidence 0111121111 11112221 12479999999999999999999999875
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.99 E-value=1.5e-05 Score=68.40 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=82.8
Q ss_pred eeeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc--------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 48 eessF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~--------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
.+.++.+++|......|..--+..-+.| +.+++.|.++.. +..|+|.. ++-.+.+|.++|..+.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG-----TIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEE-----CHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEe-----CHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999 689999999743 23677764 467899999999999888
Q ss_pred CChHHHHHhhcccceeEEEeeccc--ccCchhhh--------hhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 119 VPAPQAIKILDDEMQCDIIKIGNL--VRNKERFV--------KRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 119 F~~EqAlkLLeDD~~~DIIdI~~l--v~nke~f~--------RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
++...+. .+.+++..- ..+.+... ...|+|||++|+|.+.|+..|||+|.|.
T Consensus 79 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~ 140 (178)
T 2anr_A 79 MPQNVAK--------TEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 140 (178)
T ss_dssp CCCC-------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEEC
T ss_pred cCCcccc--------CCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEe
Confidence 7653221 111111100 00011111 2359999999999999999999999875
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.83 E-value=4.3e-05 Score=64.49 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=81.0
Q ss_pred eeeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcCC-
Q 019435 48 EVSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV- 119 (341)
Q Consensus 48 eessF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF- 119 (341)
+..++.+++|.....+|..--+..-+.| +.+|+.|.++.. +..|+|. .+|..+.+|+.+|..+....
T Consensus 1 ~~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~-----G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 1 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIIT-----GPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp -CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEE-----ECHHHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHhccc
Confidence 3467899999999999999999999999 689999999753 2357775 46889999998887654322
Q ss_pred --ChHHHHHhhcccce-eEEEeecccccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 120 --PAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 120 --~~EqAlkLLeDD~~-~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
++. ++.. ...+.|. ....|+|||++|++.+.|...|||+|.|.
T Consensus 76 ~~~~~-------~~~~~~~~i~vp---------~~~~g~iIGkgG~~I~~i~~~tga~I~i~ 121 (163)
T 3krm_A 76 FFGPK-------EEVKLETHIRVP---------ASAAGRVIGKGGKTVNELQNLTAAEVVVP 121 (163)
T ss_dssp SSCSS-------CCCCEEEEEEEE---------TTTHHHHHCGGGHHHHHHHHHHCCEEECC
T ss_pred ccccc-------cCCceEEEEEcC---------hhheeeEEcCCChHHHHHHHHhCCeEEEC
Confidence 111 1111 1122222 13579999999999999999999999775
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.42 E-value=0.00044 Score=58.11 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=78.1
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEccc---CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~e---GsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAl 125 (341)
..+.+++|......|..--+..-+.| +++|+.|.++... +.|+|.. ++..+.+|+.+|..+.. +.+
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~-----e~~ 74 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLE-----EDI 74 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEE-----EHHHHHHHHHHHHHHHH-----HHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHH-----hhc
Confidence 45689999999999999999999889 6899999998652 3788864 36789999998764321 110
Q ss_pred H-hhc------ccceeEEEeecccccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435 126 K-ILD------DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 126 k-LLe------DD~~~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
. -.. ..-....+.|. ....|+|||++|++.+.|+..|||+|.|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~i~vp---------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~ 125 (160)
T 2jzx_A 75 SSSMTNSTAASRPPVTLRLVVP---------ASQCGSLIGKGGCKIKEIRESTGAQVQVA 125 (160)
T ss_dssp TSCCCSSSCCCCCSEEEEEEEE---------HHHHHHHHCGGGHHHHHHHHHHSSEECCC
T ss_pred cccCCCCccCCCCCEEEEEEEC---------hhheeeEECCCCHHHHHHHHHhCCeEEEC
Confidence 0 000 00111111111 23579999999999999999999999874
No 8
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.65 E-value=0.00026 Score=61.23 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=25.7
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.+||||||.|.|.+.||..|||+|.|.
T Consensus 18 fiG~IiGPrG~t~K~ie~eTg~kI~Ir 44 (140)
T 2bl5_A 18 FVGRILGPRGLTAKQLEAETGCKIMVR 44 (140)
T ss_dssp HHHHHTTTTHHHHHHHHHHHSEEEEEE
T ss_pred eeeEEECCCcchHHHHHHHHCCeEEEe
Confidence 579999999999999999999999986
No 9
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.56 E-value=0.00035 Score=59.29 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=25.2
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.+||||||+|+|.+.||.-|||.|.|.
T Consensus 23 ~iG~IIGP~G~tiK~Iq~eTG~kI~Ir 49 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKECNAKIMIR 49 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEE
T ss_pred eeeeEECCCcHHHHHHHHHHCCeEEec
Confidence 579999999999999999999999874
No 10
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=95.97 E-value=0.0012 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=25.1
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||.|.|.
T Consensus 24 ~ig~IIGkgG~~Ik~I~~~tga~I~i~ 50 (85)
T 2opv_A 24 KAGLVIGKGGETIKQLQERAGVKMILI 50 (85)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEEC
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEc
Confidence 569999999999999999999999874
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=95.93 E-value=0.0013 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||+|.|.
T Consensus 13 ~vg~IIGkgG~~Ik~I~~~tga~I~i~ 39 (76)
T 1dtj_A 13 LVGAILGKGGKTLVEYQELTGARIQIS 39 (76)
T ss_dssp THHHHHCSTTHHHHHHHHHHCCEEEEC
T ss_pred HcceEECCCchHHHHHHHHhCCEEEEC
Confidence 469999999999999999999999874
No 12
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.0012 Score=55.51 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=25.3
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.+|+|||++|+|.+.|+.-|||.|.|.
T Consensus 29 ~ig~IIGpgG~tiK~I~~eTG~kI~I~ 55 (119)
T 2yqr_A 29 VKEKVEGPGCSYLQHIQIETGAKVFLR 55 (119)
T ss_dssp HHHHHSCGGGHHHHHHHHHHCCEEEEE
T ss_pred eeeeEECCCChHHHHHHHHHCCEEEEe
Confidence 579999999999999999999999885
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=95.34 E-value=0.0021 Score=49.81 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.9
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|.|.+.|+..|||+|.|.
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~ 39 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQIS 39 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEc
Confidence 569999999999999999999999873
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.26 E-value=0.039 Score=46.66 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred eeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-cCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHHhhcc
Q 019435 53 STLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130 (341)
Q Consensus 53 ~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAlkLLeD 130 (341)
.+++|..-...+-..-+..-+.| +++++.+-.... ...+.+. +..|..+.+|+.++. + +
T Consensus 7 ~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~----~~~p~~v~~~~~~l~-------------~--~ 67 (144)
T 2qnd_A 7 QFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIY----GEDQDAVKKARSFLE-------------F--A 67 (144)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEE----ESSHHHHHHHHHHHC-------------E--E
T ss_pred EEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCchheeec----cCCHHHHHHHHHhhh-------------c--c
Confidence 57899999999999999888888 678866433322 3334443 356777766654431 0 1
Q ss_pred cceeEEEeecccccCchhhhhhhccccCCCCchhHHHHHhhcc-hhhHH
Q 019435 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC-YILVQ 178 (341)
Q Consensus 131 D~~~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~-yI~Vq 178 (341)
+ ..+- +.+ ...|++||++|.+.+-|..+||| +|.|.
T Consensus 68 e---~~v~----Vp~-----~~~g~~IGK~G~nIr~i~~~tG~~~I~i~ 104 (144)
T 2qnd_A 68 E---DVIQ----VPR-----NLVGKVIGKNGKLIQEIVDKSGVVRVRIE 104 (144)
T ss_dssp E---EEEE----EEG-----GGHHHHHCGGGHHHHHHHHHHTCSEEEEE
T ss_pred e---EEEE----ECH-----HHcCeeECCCCHHHHHHHHHHCCEEEEEc
Confidence 1 1111 211 24699999999999999999997 88764
No 15
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=95.25 E-value=0.004 Score=46.88 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=24.6
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|++.+.|+.-|||.|.|.
T Consensus 15 ~ig~iIG~gG~~I~~I~e~tg~~I~i~ 41 (71)
T 1vig_A 15 FHRHLIGKSGANINRIKDQYKVSVRIP 41 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHTCCEEECC
T ss_pred HhhhhcCCCCccHHHHHHHHCCEEEEC
Confidence 468999999999999999999998764
No 16
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=95.19 E-value=0.0035 Score=50.34 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|.|.+.|+..|||+|.|.
T Consensus 25 ~ig~IIGkgG~~Ik~I~~~tga~I~I~ 51 (104)
T 1we8_A 25 SVGRIIGRGGETIRSICKASGAKITCD 51 (104)
T ss_dssp THHHHHTTTSHHHHHHHHHHCCEEEEC
T ss_pred heeeeECCCCHHHHHHHHHHCCEEEEe
Confidence 569999999999999999999999874
No 17
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=95.10 E-value=0.0047 Score=48.75 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=25.1
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|.|.+.|+..|||+|.|.
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~ 51 (94)
T 1x4m_A 25 KAGLVIGKGGETIKQLQERAGVKMVMI 51 (94)
T ss_dssp HHHHHSCSSSSHHHHHHHHHTSEEEEC
T ss_pred hcceEECCCCHHHHHHHHHHCCeEEec
Confidence 569999999999999999999999874
No 18
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.95 E-value=0.0031 Score=47.58 Aligned_cols=27 Identities=11% Similarity=0.327 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|++.+.|+..|||+|.|.
T Consensus 15 ~vg~iIGkgG~~Ik~I~~~tga~I~i~ 41 (76)
T 2p2r_A 15 LIGCIIGRQGAKINEIRQMSGAQIKIA 41 (76)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred HcceEECCCChHHHHHHHHHCCEEEEc
Confidence 469999999999999999999999885
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.82 E-value=0.0048 Score=48.49 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=25.2
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||+|.|.
T Consensus 25 ~vG~IIGkgG~~Ik~I~~~tga~I~I~ 51 (92)
T 1x4n_A 25 MVGFIIGRGGEQISRIQQESGCKIQIA 51 (92)
T ss_dssp HHHHHHCSSSHHHHHHHHHSCCEEEEC
T ss_pred HcceeECCCchHHHHHHHHhCCEEEEc
Confidence 569999999999999999999999875
No 20
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.68 E-value=0.0069 Score=48.30 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=24.6
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||+|.|.
T Consensus 27 ~ig~IIG~gG~~Ir~I~e~tg~~I~i~ 53 (95)
T 2ctm_A 27 VHARIIGARGKAIRKIMDEFKVDIRFP 53 (95)
T ss_dssp THHHHHCSSSCHHHHHHHHHTCEEECC
T ss_pred HccccCCCCcchHHHHHHHHCCeEEec
Confidence 468999999999999999999998874
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.61 E-value=0.0076 Score=48.14 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=24.5
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..++|||++|+|.+.|...|||+|.|.
T Consensus 27 ~ig~IIGkgG~~Ik~I~~etg~~I~i~ 53 (97)
T 2ctl_A 27 YHPKIIGRKGAVITQIRLEHDVNIQFP 53 (97)
T ss_dssp THHHHSCSSSCHHHHHHHHHTCEEECC
T ss_pred HhhhcCCCCchhHHHHHHHHCCEEEec
Confidence 458999999999999999999998774
No 22
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.60 E-value=0.01 Score=48.06 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=25.2
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||+|.|.
T Consensus 17 ~vG~IIGkgG~~Ik~I~~~TGa~I~I~ 43 (107)
T 2hh2_A 17 KCGLVIGRGGENVKAINQQTGAFVEIS 43 (107)
T ss_dssp GTTTTSTTTTCHHHHHHHHSSSEEEEC
T ss_pred HcCccCCCCcHHHHHHHHHhCCEEEEc
Confidence 569999999999999999999999885
No 23
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.59 E-value=0.0078 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=24.3
Q ss_pred hhccccCCCCchhHHHHHhhcchhhH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILV 177 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~V 177 (341)
..|.|||++|+|.+.|+.-|||+|-|
T Consensus 27 ~ig~IIG~gG~~Ik~I~~etg~~I~i 52 (94)
T 2cte_A 27 HHRFVIGKNGEKLQDLELKTATKIQI 52 (94)
T ss_dssp THHHHHCSSSCHHHHHHHHTTCCCBC
T ss_pred HeeeeECCCChhHHHHHHHHCCEEEe
Confidence 46999999999999999999999987
No 24
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.54 E-value=0.0071 Score=46.40 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|++.+.|+..|||+|.|.
T Consensus 17 ~vg~iIGkgG~~Ik~I~~~tga~I~i~ 43 (82)
T 1zzk_A 17 LAGSIIGKGGQRIKQIRHESGASIKID 43 (82)
T ss_dssp TGGGGTCGGGHHHHHHHHHHCCEEEEC
T ss_pred hcCeeECCCchHHHHHHHHHCCEEEEc
Confidence 569999999999999999999998875
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.51 E-value=0.0066 Score=49.13 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=24.6
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+.-|||.|.|.
T Consensus 27 ~ig~IIG~gG~~Ir~I~eetg~~I~I~ 53 (104)
T 2ctk_A 27 LHRYVIGQKGSGIRKMMDEFEVNIHVP 53 (104)
T ss_dssp HHHHHHCSSSHHHHHHHHHTCCEEECC
T ss_pred HccceeCCCchHHHHHHHHHCCEEEec
Confidence 468999999999999999999998764
No 26
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.44 E-value=0.0059 Score=46.75 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|++.+.|+..|||+|.|.
T Consensus 16 ~vg~IIGkgG~~Ik~I~~~sga~I~i~ 42 (82)
T 1wvn_A 16 LIGCIIGRQGANINEIRQMSGAQIKIA 42 (82)
T ss_dssp GHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred hccceeCCCchhHHHHHHHhCCEEEEe
Confidence 469999999999999999999999885
No 27
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.92 E-value=0.0076 Score=47.02 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=25.1
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|+|.+.|+..|||+|.|.
T Consensus 24 ~vg~IIGkgG~~Ik~I~~~tga~I~I~ 50 (89)
T 1j5k_A 24 LAGSIIGKGGQRIKQIRHESGASIKID 50 (89)
T ss_dssp HHHHHHCGGGHHHHHHHHHTCCEEEEC
T ss_pred hcceeECCCCHhHHHHHHHhCCeEEec
Confidence 569999999999999999999999875
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.54 E-value=0.014 Score=47.57 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=25.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..++|||++|+|.+.|+..|+|+|.|.
T Consensus 21 ~iG~IIGkgG~~Ik~I~~~TGakI~I~ 47 (106)
T 2hh3_A 21 SVGVVIGRSGEMIKKIQNDAGVRIQFK 47 (106)
T ss_dssp THHHHHTTTTHHHHHHHHHHTCEEEEC
T ss_pred HcCccCCCCcHHHHHHHHHHCcEEEEe
Confidence 469999999999999999999999885
No 29
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.35 E-value=0.011 Score=44.67 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=24.9
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|.+.+.|...|||+|.|.
T Consensus 15 ~ig~iIGkgG~~Ik~I~~~tga~I~i~ 41 (73)
T 2axy_A 15 EVGSIIGKKGESVKKMREESGARINIS 41 (73)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred HeeeEECCCCHHHHHHHHHHCCEEEEe
Confidence 569999999999999999999998875
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.33 E-value=0.016 Score=45.27 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.7
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|-|||++|.|.+.|+..|||+|.|.
T Consensus 20 ~vG~IIGkgG~tIk~Iqe~Tga~I~I~ 46 (83)
T 2dgr_A 20 VVGLVVGPKGATIKRIQQRTHTYIVTP 46 (83)
T ss_dssp HHHHHHTTTTSSHHHHHHHTTCEEECC
T ss_pred HeeeeECCCchHHHHHHHHhCCeEEec
Confidence 468899999999999999999999875
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=93.15 E-value=0.41 Score=36.70 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=53.2
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCe--------EEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGS--------MTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGs--------V~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
....+.+|..+...|..--+..-+.| +++|+.|.++- +|. |+|. .+|..+.+|.++|.+|.+
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~~~~~er~v~I~-----G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQNTNVDKPLRII-----GDPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCSSTTSCEEEEEE-----ECHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCCCCCCceEEEEE-----eCHHHHHHHHHHHHHHhc
Confidence 44578999999999999999999999 68999999986 555 8886 388999999999998853
No 32
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.31 E-value=0.14 Score=41.30 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=57.8
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccE-EEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChH
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVS-CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~-i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~E 122 (341)
...+.+|+.....+-.--+.+-+.| +.+|+. |.++-.+|.|+|.. .|+-++.+|+++|..+--.|.+.
T Consensus 16 i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~V~I~g----~~~ea~~~A~~~I~~ie~~~~vp 85 (91)
T 2cpq_A 16 HEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYG----ESADAVKKARGFLEFVEDFIQVP 85 (91)
T ss_dssp EEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTEEEEEE----SSHHHHHHHHHHHSCCCCCCCCC
T ss_pred EEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCEEEEEE----CCHHHHHHHHHHHHhhheEEecC
Confidence 3467899999999999999999999 789997 99987679999985 67889999999998776666554
No 33
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=91.99 E-value=0.37 Score=35.81 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=52.6
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc--------cCeEEEEcCCCCCChHHHHhHHHHHHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~--------eGsV~VrTt~kT~DP~~IiKArD~IkAIa 116 (341)
.+..+++|......|-.--+..-+.| +.+|+.|.++.. ++.|+|.. +|..+.+|.++|.++.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE-----SHHHHHHHHHHHHHHC
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999 679999999864 36888864 4889999999999874
No 34
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.52 E-value=0.22 Score=39.15 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=53.8
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc---cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV---EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~---eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
.+..+.||+....+|..-.+..-+.| +++++.|.++.. +|.|+|.. ++..+.+|+++|..+..
T Consensus 17 ~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-----~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 17 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLISA 83 (94)
T ss_dssp EEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-----CHHHHHHHHHHHHHHhh
Confidence 45688999999999999999999999 679999998753 58999965 38899999999998853
No 35
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=90.10 E-value=0.9 Score=33.89 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEc-----ccCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL-----VEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl-----~eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
.++.+++|......|-.--+..-+.| +.+|+.|.++. .++.|+|.. +|..+.+|.++|..+..
T Consensus 5 ~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 5 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG-----SAASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999 67999999986 378888864 48899999999998754
No 36
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=89.60 E-value=0.048 Score=45.57 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=24.9
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|+|||++|.+.+.|+..|||+|.|.
T Consensus 15 ~~g~iIGkgG~~Ik~i~~~tg~~I~i~ 41 (160)
T 2jzx_A 15 EVGSIIGKKGESVKKMREESGARINIS 41 (160)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCSEEEEE
T ss_pred heeeeECCCcHHHHHHHHHHCCEEEEc
Confidence 569999999999999999999998775
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=89.44 E-value=1 Score=34.46 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=52.7
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc--------cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~--------eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
++.+++|......|..--+..-+.| +.+|+.|.++.. ++.|+|.. +|..+.+|.++|..+..
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G-----~~~~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG-----SPAATQAAQYLISQRVT 74 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEc-----CHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999 679999999864 35788864 47899999999998854
No 38
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=89.31 E-value=0.65 Score=36.98 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=53.4
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEc-------ccCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL-------VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl-------~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
...++||......|..--+..-+.| +++|+.|.|+- .++.|+|.. .+-.+.+|.++|..+...
T Consensus 16 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G-----~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 16 FEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISG-----TQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEc-----CHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999 68999999986 478899975 334799999999988653
No 39
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=89.23 E-value=1.2 Score=33.77 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=53.0
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-----cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-----eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
.+..+++|......|-.--+..-+.| +.+|+.|.++-. ++.|+|. .+|..+.+|..+|.++..
T Consensus 6 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 6 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT-----GSAASISLAQYLINARLS 74 (82)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEE-----ECHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999999 679999999763 5688886 456899999999998854
No 40
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=88.27 E-value=0.069 Score=44.77 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=24.8
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
..|.|||++|.+.+.|+..|||.|.|.
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~ 39 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIA 39 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEc
Confidence 459999999999999999999999885
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=87.89 E-value=1.2 Score=34.31 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=53.9
Q ss_pred eeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-----cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 49 essF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-----eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
..+..+++|......|..--+..-+.| +++++.|.++.. ++.|+|.. .|-.+.+|+++|..+..
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G-----~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEE-----EHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEc-----CHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999999 679999999863 68888874 37799999999998753
No 42
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=87.06 E-value=0.12 Score=41.21 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.3
Q ss_pred hhccccCCCCchhHHHHHhh-cchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILT-GCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT-~~yI~Vq 178 (341)
..+.|||++|+|.+.|+.-| ||.|-|-
T Consensus 27 ~i~~iIG~gGk~Ir~I~eetggv~I~i~ 54 (95)
T 2ctj_A 27 LHNSLIGTKGRLIRSIMEECGGVHIHFP 54 (95)
T ss_dssp HHHHHHCSSSHHHHHHHHHHTSCEEECC
T ss_pred HHhhhCCCCchhHHHHHHHcCCCEEEeC
Confidence 35789999999999999999 9988653
No 43
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=86.55 E-value=0.99 Score=35.28 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred eeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 49 essF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
..++.++||......|..--+..-+.| +++++.|.++-. ++.|+|.. +|..+.+|.++|..+...
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-----~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-----DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-----CTTTHHHHHHHHHHHHCC
T ss_pred cEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHhc
Confidence 345679999999999999999999999 679999998753 23488863 566999999999998764
No 44
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=86.15 E-value=2.1 Score=34.56 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccC-----eEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eG-----sV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
.++.++||......|..--+..-+.| +++++.|.|+...+ .|+|.. +|..+.+|.++|..|..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G-----~~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLLQ 79 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEES-----SHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999 67999999975533 588864 37899999999998854
No 45
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=84.87 E-value=1.8 Score=33.68 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-----cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-----eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
++.++||......|..--+..-+.| +.+++.|.++-. ++.|+|.. +|-.+.+|+++|..+..
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G-----~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 16 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTG-----TPESVQSAKRLLDQIVE 83 (92)
T ss_dssp EEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999 679999999875 35788864 47799999999998754
No 46
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=84.87 E-value=0.14 Score=53.22 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=25.2
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.+|+|||++|+|.+.|+.-|||.|.|.
T Consensus 577 kI~~vIG~gG~~Ik~I~e~tg~~I~I~ 603 (630)
T 3u1k_A 577 KRAKFVGPGGYNLKKLQAETGVTISQV 603 (630)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEC
T ss_pred HhheeECCCChhHHHHHHHHCCEEEEc
Confidence 578999999999999999999999886
No 47
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=83.92 E-value=1.1 Score=46.62 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=52.1
Q ss_pred eeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHH
Q 019435 53 STLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS 116 (341)
Q Consensus 53 ~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIa 116 (341)
.+-||+.+..-|..--+.+.+.| +++|+.|.++ .+|.|.|.. .|+..+.+|.++|++|.
T Consensus 570 ~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~----~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 570 TVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA----PTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE----SSHHHHHHHHHHTTC--
T ss_pred EEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe----CCHHHHHHHHHHHHHHh
Confidence 57799999999999999999999 6899999998 689999986 78889999999998764
No 48
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.69 E-value=2.1 Score=33.23 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=49.7
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEc--ccCeEEEEcCCCCCChHHHHhHHHHHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNL--VEGSMTVSTTRKTRDPYIIVKARDLIRLL 115 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl--~eGsV~VrTt~kT~DP~~IiKArD~IkAI 115 (341)
.+..+.+|......|..-.+..-+.| +++++.|.+.. .+..|+|. .+|..+.+|+++|..+
T Consensus 10 ~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~It-----G~~e~v~~A~~~I~~~ 73 (83)
T 2dgr_A 10 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVT-----GMPENVDRAREEIEAH 73 (83)
T ss_dssp EEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEE-----ECTTTHHHHHHHHHHH
T ss_pred eEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEE-----cCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999 67999999884 34455554 5567999999999886
No 49
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=81.57 E-value=2.1 Score=32.46 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=52.7
Q ss_pred eeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-----cCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 49 essF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-----eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
..+..+++|......|..--+..-+.| +++++.|.++.. ++.|+|.. +|-.+.+|+++|..+..
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG-----TQDQIQNAQYLLQNSVK 75 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999989 679999998753 35788864 47799999999988743
No 50
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=81.51 E-value=0.48 Score=41.23 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHhHHHHHHHHHcCCChHH-HHHhh-cccceeEEEeecccccCchhhhhhhccccCCCCchhHHHHHhhcch
Q 019435 105 IVKARDLIRLLSRSVPAPQ-AIKIL-DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174 (341)
Q Consensus 105 IiKArD~IkAIaRGF~~Eq-AlkLL-eDD~~~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~LT~~y 174 (341)
+..+.+|+.-|...+.++- ++.+. .|+- .-.|+|.+ +. -|.|||+.|.|+.||+-|++-.
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~-~i~i~i~g-----ed----~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPG-VLLIDIDG-----ED----SALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETT-EEEEEEEE-----GG----GTTTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCC-EEEEEEec-----CC----cceEECCCCcchHHHHHHHHHH
Confidence 3456677777665555532 24442 2221 11233331 11 3999999999999999997433
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=81.43 E-value=2.2 Score=34.26 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=54.8
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEccc---CeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~e---GsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~Eq 123 (341)
.+..+.||+....+|..--+..-+.| +++|+.|.++-.. +.|+|..+ +..+.+|+++|..+...+.-+.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-----~e~v~~A~~~I~~i~~e~e~~~ 89 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-----AANLDRAKAGLLERVKELQAEQ 89 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-----HHHHHHHHHHHHHHHhhHHHhH
Confidence 34478899999999999999999999 6899999887532 38999752 4689999999999876544333
No 52
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=81.34 E-value=5.2 Score=29.70 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=51.9
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEccc---CeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE---GSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~e---GsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
..+.+++|......|-.--+..-+.| +++|+.|.++... +.|+|.. +|..+.+|..+|..+.+
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G-----~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG-----PTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEe-----CHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999 6899999998652 2577764 48899999999986543
No 53
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=81.07 E-value=0.25 Score=39.72 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.2
Q ss_pred hhccccCCCCchhHHHHHhhcch-hhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCY-ILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~y-I~Vq 178 (341)
.+|-+||++|+|.+.|...|||. |.|.
T Consensus 25 kIg~vIG~gGk~Ik~I~e~tGv~~IdI~ 52 (91)
T 2cpq_A 25 LMGLAIGTHGSNIQQARKVPGVTAIELD 52 (91)
T ss_dssp HHHHHHTTTTHHHHHHHTSTTEEEEEEE
T ss_pred HhhhhcCCCcHHHHHHHHHhCCeEEEEE
Confidence 46889999999999999999997 8774
No 54
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=81.04 E-value=1.5 Score=35.11 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=52.4
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc--------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~--------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
++.++||......|..--+..-+.| +++++.|.|+-. ++.|+|. .++..+.+|.++|..+...
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~-----G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIR-----GSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEE-----SCHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHHHhc
Confidence 5688999999999999888888888 679999999865 2677775 4778999999999988553
No 55
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=80.12 E-value=2.6 Score=31.28 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=50.2
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccC----eEEEEcCCCCCChHHHHhHHHHHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLL 115 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eG----sV~VrTt~kT~DP~~IiKArD~IkAI 115 (341)
.+..+.+|+....+|..-.+..-+.| +++|+.|.++. .| .|+|..+ +..+.+|+++|..|
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~-~g~~~~~V~I~G~-----~~~v~~A~~~I~~i 69 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPP-DSEKSNLIRIEGD-----PQGVQQAKRELLEL 69 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCC-CCSSSEEEEEEES-----SHHHHHHHHHHHHT
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECC-CCCcccEEEEEcC-----HHHHHHHHHHHHHH
Confidence 44578899999999999999998889 68999999975 45 8999862 45899999999875
No 56
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=77.62 E-value=2.7 Score=34.73 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=53.0
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-----cCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-----EGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-----eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
++.+++|......|-.--+..-+.| +.+|+.|.++.. ++.|+|.. +|..+..|..+|..+..+
T Consensus 92 ~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G-----~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 92 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG-----PPDRCEHAARIINDLLQS 160 (164)
T ss_dssp SBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEES-----CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc-----CHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999 679999999864 57788864 477999999999988654
No 57
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=76.61 E-value=7.9 Score=32.55 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=51.2
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc--------cCeEEEEcCCCCCChHHHHhHHHHHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV--------EGSMTVSTTRKTRDPYIIVKARDLIRLL 115 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~--------eGsV~VrTt~kT~DP~~IiKArD~IkAI 115 (341)
.++.+++|......|..--+..-+.| +.+++.|.++-. ++.|+|. .++..+.+|..+|..+
T Consensus 104 ~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 104 QEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIR-----GTPQQIDYARQLIEEK 173 (174)
T ss_dssp CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEE-----CCHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEE-----CCHHHHHHHHHHHHHh
Confidence 35578999999999999999999999 679999999754 4778885 4688999999999864
No 58
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=75.00 E-value=0.97 Score=41.62 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred hccccCCCCchhHHHHHhhcchhh
Q 019435 153 RQHLVGPNSSTLKALEILTGCYIL 176 (341)
Q Consensus 153 rgRIIG~~GkTkkaIE~LT~~yI~ 176 (341)
-|+|||++|.|+.||+.||+..|.
T Consensus 103 ~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 103 MGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred cceeecCCCeEhHHHHHHHHHHHH
Confidence 599999999999999999885544
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=73.73 E-value=6.4 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred eeeeecCchhHHHHHHhhhhHHHHH-hhc-ccEEEEEcccC----eEEEEcCCCCCChHHHHhHHHHHHHHH
Q 019435 51 SFSTLFPQYREKYLQEAWPMVKGAL-KEY-GVSCELNLVEG----SMTVSTTRKTRDPYIIVKARDLIRLLS 116 (341)
Q Consensus 51 sF~vlfPkyRe~yLKe~W~~Ikk~L-e~~-~l~i~LDl~eG----sV~VrTt~kT~DP~~IiKArD~IkAIa 116 (341)
+..+.||+....+|..--+.+-+.| +++ ++.|.++- .| .|+|.. .+. .+.+|+++|..|.
T Consensus 18 t~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~-~g~~~~~V~I~G----~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 18 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV-EGSGSDTVVIRG----PSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp CEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC-TTTTCCEEEEES----CHH-HHHHHHHHHHHHH
T ss_pred EEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC-CCCCcceEEEEc----CHH-HHHHHHHHHHHHH
Confidence 4468899999999999999999999 788 89988864 56 899986 333 8999999999885
No 60
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=72.62 E-value=6.8 Score=30.82 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=51.5
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccC-----eEEEEcCCCCCChHHHHhHHHHHHHHH
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEG-----SMTVSTTRKTRDPYIIVKARDLIRLLS 116 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eG-----sV~VrTt~kT~DP~~IiKArD~IkAIa 116 (341)
.+..+.||+.....|..--+..-+.| +++++.|.+.- .| .|+|.. .|-.+.+|+++|..|.
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~-~g~~~~~~V~I~G-----~~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQ-SGAPDPNCVTVTG-----LPENVEEAIDHILNLE 83 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCC-TTCSCTTEEEEES-----CHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecC-CCCCCCcEEEEEc-----CHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999 68999999875 44 799974 3578999999999885
No 61
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=72.60 E-value=11 Score=31.79 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=53.8
Q ss_pred eeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcc-------cCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCC
Q 019435 50 SSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLV-------EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120 (341)
Q Consensus 50 ssF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~-------eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~ 120 (341)
.+..+++|......|..--+..-+.| +.+|+.|.++.. ++.|+|. ..+..+.+|..+|..+.+.-|
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVS-----GEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEE-----SSHHHHHHHHHHHHHHHHSCC
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHHhCC
Confidence 35579999999999999999988889 689999999765 3678886 456799999999988766543
No 62
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=68.46 E-value=9.3 Score=30.08 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=52.3
Q ss_pred eeeeeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEccc------CeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 49 VSSFSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVE------GSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 49 essF~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~e------GsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
..+..+.||+.....|..--+..-+.| +++++.|.+.-.. ..|+|.. .+..+.+|+++|..|..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G-----~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITG-----YEKNTEAARDAILRIVG 86 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEES-----CHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEe-----CHHHHHHHHHHHHHHHH
Confidence 345578899999999999999988888 6899999887543 2788875 26789999999998853
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.02 E-value=29 Score=28.76 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=44.8
Q ss_pred eeecCch-------hHHHHHHhhhhHHHHH-hhcccEEEEEc---------------ccCeEEEEcCCCCCChHHHHhHH
Q 019435 53 STLFPQY-------REKYLQEAWPMVKGAL-KEYGVSCELNL---------------VEGSMTVSTTRKTRDPYIIVKAR 109 (341)
Q Consensus 53 ~vlfPky-------Re~yLKe~W~~Ikk~L-e~~~l~i~LDl---------------~eGsV~VrTt~kT~DP~~IiKAr 109 (341)
+|+||-. -..-|..--+.+-+.| +++|+.|.|.- ..+.|.|.. .|+-.+.+|.
T Consensus 15 ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a----~~~e~i~~A~ 90 (119)
T 2yqr_A 15 KLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH----PKPEGLAAAK 90 (119)
T ss_dssp EEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE----SSHHHHHHHH
T ss_pred EEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEe----CCHHHHHHHH
Confidence 5777754 3344444555666667 68999999861 347888885 7888999999
Q ss_pred HHHHHHHcC
Q 019435 110 DLIRLLSRS 118 (341)
Q Consensus 110 D~IkAIaRG 118 (341)
.+|..|..-
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999988654
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.25 E-value=23 Score=29.64 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=47.1
Q ss_pred eeecCch------hHHHHHHhhhhHHHHH-hhcccEEEEEcc---------------------cCeEEEEcCCCCCChHH
Q 019435 53 STLFPQY------REKYLQEAWPMVKGAL-KEYGVSCELNLV---------------------EGSMTVSTTRKTRDPYI 104 (341)
Q Consensus 53 ~vlfPky------Re~yLKe~W~~Ikk~L-e~~~l~i~LDl~---------------------eGsV~VrTt~kT~DP~~ 104 (341)
+|+||.. -..-|-.--+.+-+.| +++|+.|.|.-. .+.|.|.. .|+-.
T Consensus 10 kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a----~~~e~ 85 (131)
T 1k1g_A 10 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTA----NTMEN 85 (131)
T ss_dssp EEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEE----SSHHH
T ss_pred EEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEE----CCHHH
Confidence 5777766 4446666777888888 679999988642 56777775 67889
Q ss_pred HHhHHHHHHHHHcC
Q 019435 105 IVKARDLIRLLSRS 118 (341)
Q Consensus 105 IiKArD~IkAIaRG 118 (341)
+.+|.++|..|..-
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 65
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=60.88 E-value=1.4 Score=40.13 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.6
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
+.|-|||++|+|.+.|+.-|||.|-|.
T Consensus 44 kig~lIG~gGk~Ik~I~e~tgvkI~I~ 70 (219)
T 2e3u_A 44 RIAVLIGKKGQTKKEIEKRTKTKITID 70 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTEEEEEC
T ss_pred HhhhhhcccHHHHHHHHHHHCcEEEEE
Confidence 578999999999999999999988765
No 66
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=60.34 E-value=1.8 Score=45.85 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=0.0
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.++.|||++|+|.+.|..-||+.|.|.
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~ 606 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN 606 (726)
T ss_dssp ---------------------------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE
Confidence 368899999999999999999999998
No 67
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=60.22 E-value=1.8 Score=34.70 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.0
Q ss_pred hccccCCCCchhHHHHH-hhcchhhH
Q 019435 153 RQHLVGPNSSTLKALEI-LTGCYILV 177 (341)
Q Consensus 153 rgRIIG~~GkTkkaIE~-LT~~yI~V 177 (341)
.+.|||++|.+.+-|+. .|+|.|.+
T Consensus 38 h~~IIG~~G~~Ik~i~~~~~~v~I~f 63 (102)
T 2ctf_A 38 HRFIIGKKGQNLAKITQQMPKVHIEF 63 (102)
T ss_dssp HHHHHTTTTCHHHHHHHHCSSSEEEE
T ss_pred HhhhcCCCCccHHHHHHHcCCcEEEe
Confidence 47899999999999988 67887654
No 68
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=58.59 E-value=1.7 Score=37.79 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=24.4
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
.-++|+|++|.-...||.+|+|.|-|.
T Consensus 66 lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 66 LLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhcccCCCcCccchHHhhcceeEEEe
Confidence 458999999999999999999988775
No 69
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=46.91 E-value=58 Score=25.81 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred eeeecCchhHHHHHHhhhhHHHHH-hhc-ccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHc
Q 019435 52 FSTLFPQYREKYLQEAWPMVKGAL-KEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117 (341)
Q Consensus 52 F~vlfPkyRe~yLKe~W~~Ikk~L-e~~-~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaR 117 (341)
-.+.||+.--.+|...-+..-+.| +++ ++.|.+.-.++.|+|+. .+-.+.+|+..|.++..
T Consensus 29 ~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G-----~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 29 SSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEG-----PTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp EEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSSSCEEEEEE-----CHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCCCCEEEEEC-----CHHHHHHHHHHHHHHHH
Confidence 368899999999999999999989 444 89888887788999975 47899999998887764
No 70
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=41.93 E-value=56 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.1
Q ss_pred HhhhhHHHHHh-hcccEEEEEcccCeEEEEc
Q 019435 66 EAWPMVKGALK-EYGVSCELNLVEGSMTVST 95 (341)
Q Consensus 66 e~W~~Ikk~Le-~~~l~i~LDl~eGsV~VrT 95 (341)
.|-..|.+.|. .-|+.+.+|+.++.++|..
T Consensus 14 ~C~~~i~~~l~~~~gV~v~v~~~~~~~~v~~ 44 (68)
T 3iwl_A 14 GCAEAVSRVLNKLGGVKYDIDLPNKKVCIES 44 (68)
T ss_dssp HHHHHHHHHHHHHCSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCEEEEEe
Confidence 46678889995 4678999999999999985
No 71
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.08 E-value=1e+02 Score=20.55 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=28.7
Q ss_pred HhhhhHHHHHhh-ccc-EEEEEcccCeEEEEcCCCCCChHHHHh
Q 019435 66 EAWPMVKGALKE-YGV-SCELNLVEGSMTVSTTRKTRDPYIIVK 107 (341)
Q Consensus 66 e~W~~Ikk~Le~-~~l-~i~LDl~eGsV~VrTt~kT~DP~~IiK 107 (341)
.+-..|.+.|.. -|+ .+.+|+.++.++|.. ....++-.|..
T Consensus 15 ~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~-~~~~~~~~i~~ 57 (69)
T 4a4j_A 15 SCASSIERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTD 57 (69)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEETTTTEEEEEE-CTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEEecCCEEEEEE-CCCCCHHHHHH
Confidence 356678888853 566 489999999999985 33455544443
No 72
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=32.31 E-value=92 Score=21.18 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.0
Q ss_pred hhhhHHHHHh-hccc-EEEEEcccCeEEEEcCCCCCChHHHHhH
Q 019435 67 AWPMVKGALK-EYGV-SCELNLVEGSMTVSTTRKTRDPYIIVKA 108 (341)
Q Consensus 67 ~W~~Ikk~Le-~~~l-~i~LDl~eGsV~VrTt~kT~DP~~IiKA 108 (341)
|=..|.+.|. .-|+ .+.+|+.++.++|.......++-.|..+
T Consensus 16 C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~ 59 (74)
T 3dxs_X 16 CSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEE 59 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHH
Confidence 4456788885 3576 5899999999999864444555555444
No 73
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=31.24 E-value=1.1e+02 Score=20.10 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=31.0
Q ss_pred HhhhhHHHHHhhccc-EEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHH-cCCCh
Q 019435 66 EAWPMVKGALKEYGV-SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS-RSVPA 121 (341)
Q Consensus 66 e~W~~Ikk~Le~~~l-~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIa-RGF~~ 121 (341)
.+...|.+.|...|+ .+.+|+..+.++|.. |+. .+++.+|. .||.+
T Consensus 14 ~C~~~i~~~l~~~gv~~~~v~~~~~~~~v~~-----~~~-----~~i~~~i~~~Gy~~ 61 (67)
T 2kyz_A 14 HCKMRISKALEELGVKNYEVSVEEKKVVVET-----ENL-----DSVLKKLEEIDYPV 61 (67)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTTTEEEEEC-----SCH-----HHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCEEEEEE-----CCH-----HHHHHHHHHcCCce
Confidence 455678888843377 689999999999964 332 45666654 36654
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=27.87 E-value=16 Score=38.75 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=12.6
Q ss_pred eeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHcC
Q 019435 53 STLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118 (341)
Q Consensus 53 ~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRG 118 (341)
.+-||+....-+..--+.+-+.| +++|++|.++ .+|.|.|.. .|.-.+.+|+++|.+|..-
T Consensus 573 ~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-ddG~v~I~~----~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 573 TINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-DDGVVKVSA----SDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ------------------------------------------CC----SCHHHHHHHHHC-------
T ss_pred EEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-CCceEEEEe----CCHHHHHHHHHHHHHHhhh
Confidence 46689999999999999988888 7899999888 579999986 7889999999999998853
No 75
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=27.16 E-value=11 Score=33.62 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.4
Q ss_pred hhccccCCCCchhHHHHHhhcchhhHH
Q 019435 152 RRQHLVGPNSSTLKALEILTGCYILVQ 178 (341)
Q Consensus 152 rrgRIIG~~GkTkkaIE~LT~~yI~Vq 178 (341)
+.|=|||..|.|.+.|+..+||.|-|.
T Consensus 14 rvg~liGk~g~~~k~i~e~~g~~i~id 40 (191)
T 1tua_A 14 RLGAVIGPRGEVKAEIMRRTGTVITVD 40 (191)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTEEEEEE
T ss_pred HhhHHHhcCHhHHHHHHHHHCcEEEEE
Confidence 568899999999999999999998775
No 76
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=23.45 E-value=22 Score=34.91 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=33.4
Q ss_pred HcCCChHHHHHhhccc--ceeEEEeecccccCchhhhhhhccccCCCC--chhHHHHHhhcchhhH
Q 019435 116 SRSVPAPQAIKILDDE--MQCDIIKIGNLVRNKERFVKRRQHLVGPNS--STLKALEILTGCYILV 177 (341)
Q Consensus 116 aRGF~~EqAlkLLeDD--~~~DIIdI~~lv~nke~f~RrrgRIIG~~G--kTkkaIE~LT~~yI~V 177 (341)
+-|.|..--+-+|++. -+..-++|.. .--..|||++| ...+-|-.-|||.|-+
T Consensus 11 ~~~~~~~~~~~~le~~~~~VTl~v~Ip~---------~~Hs~IIGkgG~~sNIkkImeEtgv~I~f 67 (376)
T 3n89_A 11 AQGLPLPSNIPMIEINPTRVTLNMEFES---------QYYSLMTSDNGDHENVASIMAETNTLIQL 67 (376)
T ss_dssp --CCSBCCCSCCCCCCTTEEEEEEECCG---------GGHHHHHSCCSSSCSHHHHHHHHTCEEEC
T ss_pred hcCCCCCccceEEEecCCEEEEEEEEch---------hhhhhhccCCChHHHHHHHHHHhCCeEEC
Confidence 4466665555556532 2222233331 22367999999 9999999999999865
No 77
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=20.80 E-value=63 Score=23.72 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCChHHHHHhhc
Q 019435 109 RDLIRLLSRSVPAPQAIKILD 129 (341)
Q Consensus 109 rD~IkAIaRGF~~EqAlkLLe 129 (341)
..+-++++.||+.++|++-|.
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 468889999999999999885
Done!