BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019436
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 28 GKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELL 87
G + TP GL + +W ++++ T+ +FLA VYSD+ K L
Sbjct: 315 GYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDKEKAKT---------YL 365
Query: 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFS 147
FA+SQ DY LG R S++VG+G N P+R HHR + + +W
Sbjct: 366 EFARSQADYALGSTGR--SFVVGFGENPPKRPHHRTA-----------------HGSWAD 406
Query: 148 SKGSDP---NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 197
S+ P ++L GA+VGGPD+ DN+ D NY E A NA +G+LA++
Sbjct: 407 SQMEPPEHRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 459
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 32/164 (19%)
Query: 34 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 93
V TPGGL + W +++ + S + VY C LL AK Q
Sbjct: 291 VTTTPGGLKWLSNWGVLRYAAAESMVMLVY------------CKQN--PDQSLLDLAKKQ 336
Query: 94 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 153
VDYILGDNP SY++GYG+N+ HHRA++ GY T+ + + P
Sbjct: 337 VDYILGDNPANMSYIIGYGSNWCIHPHHRAAN---------------GY-TYANGDNAKP 380
Query: 154 --NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILA 195
+LL GA+VGGPD D F D + Y+ TE A NA ++G+LA
Sbjct: 381 AKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 27/169 (15%)
Query: 33 NVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKS 92
N QKTP GL++ W ++ +A+F+ L+ + ++ + FA++
Sbjct: 287 NQQKTPKGLLYIDMWGTLRHAANAAFIM-------------LEAAELGLSASSYRQFAQT 333
Query: 93 QVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSD 152
Q+DY LGD R S++ G+G+N P R HHR+SS P+ +C W + D
Sbjct: 334 QIDYALGDGGR--SFVCGFGSNPPTRPHHRSSSCP-----PAPATC-----DWNTFNSPD 381
Query: 153 PN--LLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 199
PN +L GA+VGGPD DN+ D R +Y E AT NA LA L A
Sbjct: 382 PNYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVA 430
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 26 CLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAE 85
+G + V +PGG+ W +++ + +F+A VY+ + R +
Sbjct: 292 TVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDPVRKQRYH-------- 343
Query: 86 LLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATW 145
FA Q++Y LGDNPR +SY+VG+GNN P+ HHR + G +
Sbjct: 344 --DFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHR--------------TAHGSWTDS 387
Query: 146 FSSKGSDPNLLVGAVVGGPDAY-DNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203
+S + ++L GA+VGGP + D + D R +Y E AT NA LA L +GG
Sbjct: 388 IASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG 446
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 29/178 (16%)
Query: 28 GKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELL 87
G ++ TP GL + +W ++++ T+ +FLA VYSD++ +
Sbjct: 315 GYNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVGCPSTKKEI---------YR 365
Query: 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRA--SSIVSIKVNPSFVSCRGGYATW 145
F +SQ+DY LG R S++VG+G N P+R HHR SS + PS+
Sbjct: 366 KFGESQIDYALGSAGR--SFVVGFGTNPPKRPHHRTAHSSWADSQSIPSY---------- 413
Query: 146 FSSKGSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203
+ L GA+VGGP + D++ D NY E A NA +G LA++ +GG
Sbjct: 414 ------HRHTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKMYQLYGG 465
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 30 GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGF 89
G+R V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F
Sbjct: 295 GTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DF 344
Query: 90 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 149
KSQ+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 345 LKSQIDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSP 388
Query: 150 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 389 TYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 30 GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGF 89
G+R V TP GL + +W +++ T+ +FLA VY+++ C+ V+ + F
Sbjct: 295 GTR-VSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEG-------CTPSKVSVYK--DF 344
Query: 90 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 149
KSQ+DY LG R S++VGYG N PQ HHR + G + +S
Sbjct: 345 LKSQIDYALGSTGR--SFVVGYGVNPPQHPHHR--------------TAHGSWTDQMTSP 388
Query: 150 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203
+ + GA+VGGPD D + D +NY E A NA G LA++ GG
Sbjct: 389 TYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 442
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 32/166 (19%)
Query: 34 VQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFAKSQ 93
+ TPGG +F +W + ++ T+A +A VY + P++ +A+SQ
Sbjct: 377 ITVTPGGYVFLNQWGSARYNTAAQLIALVYDKHHGDT------------PSKYANWARSQ 424
Query: 94 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 153
+DY+LG NP Y+VGY +N + HHRA+S + + S P
Sbjct: 425 MDYLLGKNPLNRCYVVGYSSNSVKYPHHRAASGLK------------------DANDSSP 466
Query: 154 N--LLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARL 197
+ +L GA+VGGPDA D DR ++Y E A NA +G A L
Sbjct: 467 HKYVLYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACAGL 512
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 90 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSK 149
A+ DY+ G NP Y+ G+G + HHR S + +P GG +
Sbjct: 431 AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADDVD-HPVPGMVVGGPNRHLQDE 489
Query: 150 GSDPNLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHG 202
+ A + G A + + D +D+Y E A Y N+P + ++A L G
Sbjct: 490 ------IARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIAALLEARG 536
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 60 ATVYSDYLASAGRDLKCSAGNVAP-AELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQR 118
ATV + AG L C A AP A+L+ + ++ + T+ VGYG+ YP
Sbjct: 32 ATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSV------ETATTVGYGDLYPVT 85
Query: 119 VHHRASSIVSIKVN-PSFVSCRGGYATWFSSKGSD 152
+ R ++V + SF ATWF + +
Sbjct: 86 LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 94 VDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDP 153
+ Y+LG N SY+ GYG Q H R + + K P+ G + +S+ DP
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPA--PPPGIISGGPNSRFEDP 561
Query: 154 NLLVGAVVGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLN 198
+ P F D D++ E NAP + A L+
Sbjct: 562 TINAAVKKDTP-PQKCFIDHTDSWSTNEITVNWNAPFAWVTAYLD 605
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 157 VGAVVGGPDAYDNFGDRRDNYEQTEPA---------TYNNAPILGILARLNAGHGGYNQL 207
+G +GG ++ FG RRD E+ +PA T+NN IL ++AGH Q+
Sbjct: 298 LGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNN----NILT-MSAGHAALTQI 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,769,933
Number of Sequences: 62578
Number of extensions: 388370
Number of successful extensions: 807
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 14
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)