Query 019436
Match_columns 341
No_of_seqs 262 out of 940
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02171 endoglucanase 100.0 2.6E-86 5.5E-91 687.4 33.6 332 2-341 298-629 (629)
2 PLN02340 endoglucanase 100.0 5.7E-79 1.2E-83 631.2 24.3 312 2-339 297-614 (614)
3 PLN00119 endoglucanase 100.0 1.8E-60 3.8E-65 482.7 18.3 192 7-198 298-489 (489)
4 PLN02266 endoglucanase 100.0 2.4E-60 5.2E-65 483.7 18.2 194 9-203 315-509 (510)
5 PLN02175 endoglucanase 100.0 3.7E-59 7.9E-64 472.2 18.2 192 9-201 290-482 (484)
6 PLN02420 endoglucanase 100.0 5.1E-59 1.1E-63 475.4 18.7 199 4-202 311-511 (525)
7 PLN02308 endoglucanase 100.0 1.7E-58 3.7E-63 469.2 18.4 190 9-199 297-487 (492)
8 PLN02613 endoglucanase 100.0 3.1E-58 6.7E-63 467.5 18.2 194 10-203 289-484 (498)
9 PLN02345 endoglucanase 100.0 1.1E-57 2.4E-62 461.0 18.2 189 6-199 270-460 (469)
10 PLN02909 Endoglucanase 100.0 1.3E-57 2.8E-62 461.4 18.0 189 10-199 296-485 (486)
11 PLN03009 cellulase 100.0 1.7E-54 3.6E-59 441.0 17.8 191 11-202 302-493 (495)
12 PF00759 Glyco_hydro_9: Glycos 100.0 4.1E-42 8.8E-47 344.7 8.8 161 11-195 284-444 (444)
13 PF09478 CBM49: Carbohydrate b 99.9 2E-22 4.3E-27 159.0 10.5 79 249-327 1-80 (80)
14 PF00553 CBM_2: Cellulose bind 98.9 1.5E-09 3.2E-14 89.1 5.9 76 250-329 2-85 (101)
15 smart00637 CBD_II CBD_II domai 98.6 2.4E-07 5.3E-12 74.3 8.5 68 257-328 2-78 (92)
16 COG5297 CelA Cellobiohydrolase 97.8 7.5E-05 1.6E-09 74.0 8.1 81 240-326 456-542 (544)
17 PF06483 ChiC: Chitinase C; I 96.6 0.021 4.5E-07 51.7 10.0 88 247-336 34-153 (180)
18 PF09624 DUF2393: Protein of u 84.1 7.7 0.00017 33.5 8.7 71 267-338 64-147 (149)
19 PF01299 Lamp: Lysosome-associ 78.7 55 0.0012 31.8 13.5 24 317-340 172-195 (306)
20 PF10633 NPCBM_assoc: NPCBM-as 74.8 6.9 0.00015 30.0 4.8 54 267-328 7-60 (78)
21 PF07705 CARDB: CARDB; InterP 56.7 87 0.0019 23.9 8.4 51 267-328 21-71 (101)
22 PF11611 DUF4352: Domain of un 55.5 89 0.0019 25.2 8.2 75 257-335 26-112 (123)
23 PF05753 TRAP_beta: Translocon 54.6 82 0.0018 28.6 8.4 76 247-327 21-96 (181)
24 TIGR01451 B_ant_repeat conserv 54.3 22 0.00047 25.7 3.8 23 266-288 13-35 (53)
25 PRK05461 apaG CO2+/MG2+ efflux 46.0 74 0.0016 27.4 6.4 20 262-281 26-45 (127)
26 PF04379 DUF525: Protein of un 42.6 99 0.0021 24.9 6.3 19 263-281 10-28 (90)
27 PF01345 DUF11: Domain of unkn 37.5 51 0.0011 24.8 3.7 41 247-288 24-64 (76)
28 PF14796 AP3B1_C: Clathrin-ada 33.5 90 0.0019 27.6 5.1 68 246-321 66-133 (145)
29 COG3889 Predicted solute bindi 32.9 21 0.00046 39.3 1.2 33 80-112 644-680 (872)
30 KOG3865 Arrestin [Signal trans 29.7 52 0.0011 32.9 3.2 43 247-290 193-235 (402)
31 PF03663 Glyco_hydro_76: Glyco 29.4 53 0.0012 32.8 3.4 74 13-99 112-189 (370)
32 PF01690 PLRV_ORF5: Potato lea 29.3 2.6E+02 0.0055 29.4 8.2 15 275-289 83-97 (465)
33 PF12690 BsuPI: Intracellular 29.1 1.4E+02 0.0031 23.4 5.1 56 268-328 3-70 (82)
34 PF03173 CHB_HEX: Putative car 28.0 2.2E+02 0.0047 25.6 6.6 70 266-336 31-119 (164)
35 COG1470 Predicted membrane pro 26.7 91 0.002 32.7 4.5 48 267-322 399-446 (513)
36 PF14263 DUF4354: Domain of un 26.6 3.1E+02 0.0068 23.6 7.0 72 249-325 29-104 (124)
37 PF14874 PapD-like: Flagellar- 26.2 2.7E+02 0.0059 21.7 6.4 50 263-323 19-68 (102)
38 COG2967 ApaG Uncharacterized p 26.1 1E+02 0.0022 26.6 3.9 50 263-322 26-83 (126)
39 PF08626 TRAPPC9-Trs120: Trans 23.9 2.4E+02 0.0053 32.8 7.7 66 266-331 800-882 (1185)
40 PF06052 3-HAO: 3-hydroxyanthr 22.8 38 0.00082 30.2 0.8 13 156-168 34-46 (151)
41 PF03896 TRAP_alpha: Transloco 22.4 3.1E+02 0.0068 26.8 7.1 57 267-326 101-158 (285)
42 cd02681 MIT_calpain7_1 MIT: do 21.9 82 0.0018 24.7 2.4 24 4-27 18-41 (76)
43 PHA02662 ORF131 putative membr 21.2 2.2E+02 0.0048 27.0 5.5 18 315-332 140-158 (226)
No 1
>PLN02171 endoglucanase
Probab=100.00 E-value=2.6e-86 Score=687.44 Aligned_cols=332 Identities=76% Similarity=1.256 Sum_probs=295.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCCCCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Q 019436 2 QGKAGHYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNV 81 (341)
Q Consensus 2 ~~~~~~~~~~l~~y~~~a~~f~~~~~~~~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~ 81 (341)
+|+++.++..+++|+++||.|+|+++++++.++.+|||||+|++.||+|||++|+|||+++|+|++.++++.++|+.+..
T Consensus 298 ~~~~~~~~~~~~~y~~~ad~~~~~~l~~~~~~~~~TpgGl~~~~~Wgs~~y~~naafl~~vyad~~~~~~~~~~c~~~~~ 377 (629)
T PLN02171 298 QGKAGEHAAVFQRYQQKAEFFMCSCLGKGARNVQKTPGGLIYRQRWNNMQFVTSASFLLTVYSDYLASSGRALRCAAGNA 377 (629)
T ss_pred cCCccchhhHHHHHHHHHHHHHHhhccCCCceeeecCCeeEEECCCChHHHHHHHHHHHHHHHHHhhhcccccccccccC
Confidence 47778889999999999999999999876668999999999999999999999999999999999988877899998888
Q ss_pred ChHHHHHHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceee
Q 019436 82 APAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVV 161 (341)
Q Consensus 82 ~~~~~~~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlV 161 (341)
.+.+|++||++|||||||+||+++|||||||+|+|+|||||+||||+++.+|.+|+|++||+.|++++.+|||+|+||||
T Consensus 378 ~~~~y~~fA~~QidYiLG~Np~~~SYvVGyG~n~P~~pHHR~as~~~~~~~~~~~~C~~g~~~~~~~~~~np~vl~GAlV 457 (629)
T PLN02171 378 APSQLLAFAKSQVDYILGDNPRATSYMVGYGANYPRQVHHRGSSIVSIKVDPSFVSCRGGYATWFSRKGSDPNLLTGAIV 457 (629)
T ss_pred CHHHHHHHHHHhhhhhcCCCCCCCceEeecCCCCCCCcccccccCCccccCccccCCCCccchhccCCCCCCCcccCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCCccccccccCCCCchHHHHHHHHhhcCCCCCCcCccccCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 019436 162 GGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGGYNQLLPVIVPAATPVVTKPSPAPKPKTIPPTKPKTTPA 241 (341)
Q Consensus 162 GGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~t~tpt 241 (341)
||||++|.|.|+|+||++|||||||||||||+||+|...+|++.+..... +.|.++.... ++.| .-+ ..+|.
T Consensus 458 GGPd~~D~y~D~r~~y~~nEva~d~NA~~vg~lA~l~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~----~~~-~~~~~ 529 (629)
T PLN02171 458 GGPDAYDNFADERDNYEQTEPATYNNAPLLGVLARLAGGHGGYNQLLVVV-PAPSEVAINR--TPAP----QRR-PPTPA 529 (629)
T ss_pred cCCCcCCCCCccccccccCceeEecchHHHHHHHHHHhhcCCcccccccc-CCcccccccc--CCCC----CCC-cccCC
Confidence 99999999999999999999999999999999999999888876654111 1122222111 1111 110 11122
Q ss_pred CCCCCCceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEE
Q 019436 242 PASSSGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLE 321 (341)
Q Consensus 242 p~p~~~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~t 321 (341)
|.....+|+|+|+++++|++++++|+||+|+|+|++.++|++++|.++++..+||||++.+|+|+||+|+.+|++|++++
T Consensus 530 ~~~~~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s~~~ik~i~i~~~~~~~~iW~v~~~~ngytlPs~~~sL~aG~s~t 609 (629)
T PLN02171 530 PASTSSPIEIEQKATASWKAKGRTYYRYSTTVTNRSAKTLKELHLGISKLYGPLWGLTKAGYGYVLPSWMPSLPAGKSLE 609 (629)
T ss_pred CccCcceeEEEEEEEEEEEcCCceEEEEEEEEEECCCCceeeeeeeeccccccchheeecCCcccCchhhcccCCCCeeE
Confidence 22334699999999999999999999999999999999999999999998899999999889999999999999999999
Q ss_pred EEEEeCCCCceEEEEEEEeC
Q 019436 322 FVYIHTANAADVSVSAYTLA 341 (341)
Q Consensus 322 FGYI~~~~~a~l~V~~~~~~ 341 (341)
||||+++.+|+|+|+.|.|+
T Consensus 610 FgyI~~~~pA~~~v~~y~~~ 629 (629)
T PLN02171 610 FVYVHSASPADVWVSGYKLA 629 (629)
T ss_pred EEeecCCCCceEEEEEEEeC
Confidence 99999967999999999885
No 2
>PLN02340 endoglucanase
Probab=100.00 E-value=5.7e-79 Score=631.20 Aligned_cols=312 Identities=48% Similarity=0.925 Sum_probs=279.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Q 019436 2 QGKAGHYAPVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGN 80 (341)
Q Consensus 2 ~~~~~~~~~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~ 80 (341)
+|+..++...+++|+++||.|+|.++++ ++.++++||+||+|.+.|||+||++++|||+++|+|+++.+...++|+++.
T Consensus 297 ~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~g~~v~~TpgGl~~~~~Wgn~rya~~aafl~~vyad~l~~~~~~~~c~~~~ 376 (614)
T PLN02340 297 EGRGGAYTSTLKQYQAKADYFACACLQKNGGYNIQLTPGGLMYVREWNNLQYASSAAFLLAVYSDYLSAANAKLRCPDGL 376 (614)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhccCCCCccccCCCceEEeCCCChHHHHHHHHHHHHHHHHHhhhcccccccCccc
Confidence 4556677888999999999999999987 556899999999999999999999999999999999998887789999988
Q ss_pred CChHHHHHHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCcccee
Q 019436 81 VAPAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAV 160 (341)
Q Consensus 81 ~~~~~~~~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAl 160 (341)
+++++|++||++|||||||+||+++|||||||+|+|+|||||+||||++..++.+|+|.+||++|++++.+|||+|+|||
T Consensus 377 ~~~~~y~~fA~sQidYiLG~NP~~~SYVVGyG~n~P~~pHHR~as~~~~~~~~~~v~c~~g~~~~~~~~~~np~vL~GAL 456 (614)
T PLN02340 377 VQPQELLDFARSQADYILGKNPKGMSYMVGYGPKYPIHVHHRGSSIPSIFALHSTVGCVQGFDSWYRRKEADPNVIYGAL 456 (614)
T ss_pred cCHHHHHHHHHHhhHhhcCCCCCCCceEeccCCCCCCccccccccCCccccccccccCcccccccccCCCCCCCCCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccccCCccccccccCCCCchHHHHHHHHhhcC---CCCCCcCccccCCCCCcccCCCCCCCCCCCCCCCCC
Q 019436 161 VGGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGH---GGYNQLLPVIVPAATPVVTKPSPAPKPKTIPPTKPK 237 (341)
Q Consensus 161 VGGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~t 237 (341)
|||||.+|+|.|+|++|++||||||||||||++||+|.... |++.+ . ++.| .-
T Consensus 457 VGGPd~~D~y~D~r~~y~~nEvAidyNAplvg~lA~L~~~~~~~~~~~~------~-----------~~~~----~~--- 512 (614)
T PLN02340 457 VGGPDANDNFSDDRSNYEQTEPTLSGNAPLVGLFAKLQSASETADAYGS------Y-----------KPTP----NT--- 512 (614)
T ss_pred eeCCCCCCCCCccccccccccceeehhHHHHHHHHHHHhcccccccccc------C-----------CCCC----CC---
Confidence 99999999999999999999999999999999999999753 33322 0 0000 00
Q ss_pred CCCCCCCCCCceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEEc--CCceecCCccccCC
Q 019436 238 TTPAPASSSGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNL--GNAYGFPSWLNNLA 315 (341)
Q Consensus 238 ~tptp~p~~~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~--~n~~tLPs~~~~I~ 315 (341)
+| |.....+++|+|+++++|+.++++|+|+.|+|+|++.++|++++|.+.+++.+||||++. .++|+||+|+.+|.
T Consensus 513 -~~-~~~~~~~~e~~~~~~~sw~~~g~~y~~~~v~i~N~s~~pi~~l~~~~~~l~g~lwgl~~~~~~~~y~~p~~~~tl~ 590 (614)
T PLN02340 513 -SS-PKQSGAPVEFVHSITNTWTAGGTTYYRHKVIIKNKSQKPITDLKLVIEDLSGPIWGLNPTKEKNTYELPQWQKVLQ 590 (614)
T ss_pred -CC-cccCCCchhhhhhheeeeecCCceEEEEEEEEEeCCCCCchhhhhhhhhcccchhcceeccccCCccCchhhhccC
Confidence 00 111124577889999999999999999999999999999999999999999999999853 58899999999999
Q ss_pred CCCeEEEEEEeCCCCceEEEEEEE
Q 019436 316 AGKSLEFVYIHTANAADVSVSAYT 339 (341)
Q Consensus 316 pG~S~tFGYI~~~~~a~l~V~~~~ 339 (341)
+|++++|+||+.+++++++|..|+
T Consensus 591 ~g~~~~f~yi~~~~~~~~~~~~y~ 614 (614)
T PLN02340 591 PGSQLSFVYVQGGPQAKVSVLSYN 614 (614)
T ss_pred CCCeeEEEeccCCcchheeccccC
Confidence 999999999988889999998774
No 3
>PLN00119 endoglucanase
Probab=100.00 E-value=1.8e-60 Score=482.67 Aligned_cols=192 Identities=49% Similarity=0.953 Sum_probs=183.7
Q ss_pred CChhHHHHHHHHHHHHHHHhhCCCCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHH
Q 019436 7 HYAPVFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAEL 86 (341)
Q Consensus 7 ~~~~~l~~y~~~a~~f~~~~~~~~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~ 86 (341)
++++.++.|++.+|.|||.+++++..++.+||+||+|++.||++||++|+|||+++|+||+.+++..++|++..+.+++|
T Consensus 298 ~~~~~~~~y~~~ae~~~~~~~~~~~~~~~~TpgGl~~~~~wg~~ry~~~~afla~~ya~yl~~~~~~~~c~~~~~~~~~~ 377 (489)
T PLN00119 298 ESNGKIVEYKSMAEQFICNCAQKGSNNVKKTPGGLLWFLPWNNLQYTTAASFVLSAYSKYLEAAKASIQCPNGALQASDL 377 (489)
T ss_pred cchHHHHHHHHHHHHHHHhhccCCCccceecCCeeEEecCCccHHHHHHHHHHHHHHHHHHhhcccccccCCCCcCHHHH
Confidence 45667899999999999999977656789999999999999999999999999999999998877889999988999999
Q ss_pred HHHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCC
Q 019436 87 LGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDA 166 (341)
Q Consensus 87 ~~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~ 166 (341)
++||++|||||||+||+++|||||||+|+|+|||||+||||++..++.+|+|.+||+.|++++.||||+|+||||||||+
T Consensus 378 ~~fA~~QidYiLG~NP~~~SYvVGyG~n~P~~pHHR~as~~~~~~~~~~~~c~~g~~~~~~~~~pn~~vL~GAlVGGPd~ 457 (489)
T PLN00119 378 LQLARSQVDYILGSNPKNMSYMVGYGTNYPKKPHHRGASIVSIKKDKTPVTCSGGFDAWYNNPAPNPNVLMGAIVGGPDD 457 (489)
T ss_pred HHHHHHHHHHhcCCCCCCCceEeecCCCCCCccccccCCCCccccCCcccCCCCCccccccCCCCCcceecceeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCccccccccCCCCchHHHHHHHHh
Q 019436 167 YDNFGDRRDNYEQTEPATYNNAPILGILARLN 198 (341)
Q Consensus 167 ~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~ 198 (341)
+|.|.|+|+||++|||||||||+|||+||+|.
T Consensus 458 ~D~y~D~r~~y~~nEva~dyNA~~vgalA~l~ 489 (489)
T PLN00119 458 NDVYGDERSNFQQAEPATVTVAPFVGVLAAVA 489 (489)
T ss_pred CCCcCccccccccCcceeecchHHHHHhhhcC
Confidence 99999999999999999999999999999984
No 4
>PLN02266 endoglucanase
Probab=100.00 E-value=2.4e-60 Score=483.71 Aligned_cols=194 Identities=48% Similarity=0.844 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHH
Q 019436 9 APVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELL 87 (341)
Q Consensus 9 ~~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~ 87 (341)
+..+++||+.+|.|+|+++++ +...+++|||||+|++.||++||++|+|||+++|+|++..+++.+.|++..+.+.+|+
T Consensus 315 ~~~~~~yk~~~d~~~~~~~~~~~~~~~~~TpGGL~~~~~wg~lrYa~~~afla~vya~~l~~~~~~~~cg~~~~~~~~~~ 394 (510)
T PLN02266 315 VQSLHEYKGHADNFICSVIPGAPFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAKTVVNCGGTVVTPARLR 394 (510)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCccccCCCeeEEeCCCCcHHHHHHHHHHHHHHHHHHHhcCCceecCCCccCHHHHH
Confidence 457889999999999999987 4457899999999999999999999999999999999988888899998888999999
Q ss_pred HHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCC
Q 019436 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAY 167 (341)
Q Consensus 88 ~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~ 167 (341)
+||++|||||||+||++||||||||+|+|+|||||+||||++..+|.+++|++||+ |++++.||||+|+||||||||.+
T Consensus 395 ~fA~~QidYiLG~NP~~~SyvVG~G~~~P~~pHHR~as~p~~~~~~~~~~C~~g~~-~~~~~~~n~~vL~GAlVGGPd~~ 473 (510)
T PLN02266 395 SIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSVAAHPAKIQCSQGFS-IMNSQSPNPNVLVGAVVGGPDQH 473 (510)
T ss_pred HHHHhhhceeccCCCCCCceEEecCCCCCccccccCCCCCCcccCccccCCCCCcc-ccCCCCCCcceecceeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred CCccccCCccccccccCCCCchHHHHHHHHhhcCCC
Q 019436 168 DNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203 (341)
Q Consensus 168 d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~ 203 (341)
|.|.|+|+||++|||||||||+|||+||+|...+|+
T Consensus 474 D~y~D~r~~y~~nEva~dyNA~~vgalA~l~~~yg~ 509 (510)
T PLN02266 474 DRFPDERSDYEQSEPATYINAPLVGALAYLAHSYGQ 509 (510)
T ss_pred CCCCccccccccCcceeecchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988774
No 5
>PLN02175 endoglucanase
Probab=100.00 E-value=3.7e-59 Score=472.20 Aligned_cols=192 Identities=44% Similarity=0.831 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHH
Q 019436 9 APVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELL 87 (341)
Q Consensus 9 ~~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~ 87 (341)
...++.||+++|.|||.++++ .+..+++|||||+|+++||++||++|+|||+++|+|++..+++.++|++..+.+.+|+
T Consensus 290 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~TpgGL~~~~~wg~lrya~~~afla~~ya~~l~~~~~~~~cg~~~~~~~~~~ 369 (484)
T PLN02175 290 DSNFEQYKQAAENFICKILPDSPSSSTQYTQGGLMYKLPQSNLQYVTSITFLLTTYAKYMKSTKHTFNCGNSVIVPNALI 369 (484)
T ss_pred CchHHHHHHHHHHHHHhccCCCCCccccccCCceEEECCCCcHHHHHHHHHHHHHHHHHHhhcccccccCCCccCHHHHH
Confidence 445789999999999999987 4467999999999999999999999999999999999988788899999889999999
Q ss_pred HHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCC
Q 019436 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAY 167 (341)
Q Consensus 88 ~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~ 167 (341)
+||++|||||||+||+++|||||||+|+|++||||+||||+....+..++|++||+ |++++.||||+|+||||||||++
T Consensus 370 ~fA~~Q~~yiLG~np~~~syvvG~g~n~p~~pHHR~AS~p~~~~~~~~~~C~~g~~-~~~~~~pn~~vL~GAlVGGPd~~ 448 (484)
T PLN02175 370 SLSKRQVDYILGDNPIKMSYMVGFSSNFPKRIHHRASSLPSHALRSNSLGCNGGFQ-SFYTQNPNPNILTGAIVGGPNQN 448 (484)
T ss_pred HHHHHhhhhhccCCCCCCceEeecCCCCCCCccccccCCCcccccccccCCCCCcc-cccCCCCCcceecceeecCCCCC
Confidence 99999999999999999999999999999999999999999888888899999995 78889999999999999999999
Q ss_pred CCccccCCccccccccCCCCchHHHHHHHHhhcC
Q 019436 168 DNFGDRRDNYEQTEPATYNNAPILGILARLNAGH 201 (341)
Q Consensus 168 d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~ 201 (341)
|.|.|+|+||++|||||||||+|||+||+|....
T Consensus 449 D~y~D~r~dy~~nEva~dyNA~~vgalA~l~~~~ 482 (484)
T PLN02175 449 DGYPDQRDDYSHAEPATYINAAFVGPLAYFAAGR 482 (484)
T ss_pred CCcCccccccccCcceeecchHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998753
No 6
>PLN02420 endoglucanase
Probab=100.00 E-value=5.1e-59 Score=475.36 Aligned_cols=199 Identities=53% Similarity=0.985 Sum_probs=188.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhCC--CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Q 019436 4 KAGHYAPVFERYQQKAEYFMCSCLGK--GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNV 81 (341)
Q Consensus 4 ~~~~~~~~l~~y~~~a~~f~~~~~~~--~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~ 81 (341)
+...++..|++|+++||.|+|+++++ ++..+.+||+||+|++.||++||++|+|||+++|+|++..+.+.++|+++.+
T Consensus 311 ~~~~~~~~l~~y~~~ad~~~~~~~~~~~~~~~~~~TpgGl~~~~~Wgs~ryaan~afla~vya~~l~~~~~~~~c~~~~~ 390 (525)
T PLN02420 311 KHKQHSKVLQQYKSKADHYLCSILNKNINGTNVQRTPAGLLYVRQWNNMQYVSTASFLLTVYSDHLRKSNTDLECHEGTV 390 (525)
T ss_pred cccchhHHHHHHHHHHHHHHHhhccCCCCCCcccccCCeeEEeCCCCchHHHHHHHHHHHHHHHHhhhcccccccCCCCC
Confidence 34456788999999999999999987 3457899999999999999999999999999999999988888899999888
Q ss_pred ChHHHHHHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceee
Q 019436 82 APAELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVV 161 (341)
Q Consensus 82 ~~~~~~~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlV 161 (341)
.+.+|++||++|||||||+||+++|||||||+|+|+|||||+||||++.+++..|+|++||++|++.+.||||+|+||||
T Consensus 391 ~~~~~~~fA~~QidYiLG~NP~~~SYvVGfG~n~P~~pHHR~As~p~~~~~~~~~~c~~g~~~~~~~~~pn~~vL~GALV 470 (525)
T PLN02420 391 TPDEMLGFAKSQIDYILGSNPMETSYLVGYGPKYPTRVHHRGASIASFKEHKGFIGCTQGYDNWYGRSEPNPSVLVGALV 470 (525)
T ss_pred CHHHHHHHHHHhhhhhccCCCCCCceEeccCCCCCCCccccccCCCccccccccccCcccccccccCCCCCcccccCcee
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred cCCCCCCCccccCCccccccccCCCCchHHHHHHHHhhcCC
Q 019436 162 GGPDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNAGHG 202 (341)
Q Consensus 162 GGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~ 202 (341)
||||.+|.|.|+|+||++|||+|||||+||++||+|...++
T Consensus 471 GGPd~~D~y~D~r~~y~~nE~~~~~nA~~vg~lA~L~~~~~ 511 (525)
T PLN02420 471 GGPDCQDNFDDRRGNYVQTEACTYNTAPLVGVFARLIELEE 511 (525)
T ss_pred cCCCCCCCcccccccccccccchhhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999997654
No 7
>PLN02308 endoglucanase
Probab=100.00 E-value=1.7e-58 Score=469.16 Aligned_cols=190 Identities=49% Similarity=0.856 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHH
Q 019436 9 APVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELL 87 (341)
Q Consensus 9 ~~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~ 87 (341)
+..++.|++++|.|||.++++ ++..+++||+||+|+..||++||++|++||+++|+|+++.+.+.+.|+...+.+++|+
T Consensus 297 ~~~~~~~~~~ad~~l~~~~~~~~~~~~~~TpgGl~~~~~~snlrya~naafLa~~ya~~l~~~~~~~~cg~~~~~~~~y~ 376 (492)
T PLN02308 297 AEYFQSFKQNADGFICSLLPGISHPQVQYSPGGLLFKVGGSNMQHVTSLSFLLLAYSNYLSHANKVVPCGESTASPALLR 376 (492)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCcceeCCCeeEEeCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCccCHHHHH
Confidence 456889999999999999986 3456899999999999999999999999999999999988777899998888999999
Q ss_pred HHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCC
Q 019436 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAY 167 (341)
Q Consensus 88 ~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~ 167 (341)
+||++|||||||+||+++|||||||+|+|+|||||+||||++..++.+++|++||+ |++++.||||+|+||||||||.+
T Consensus 377 ~fA~~QidYiLG~NP~~~SYVVGfG~n~P~~pHHR~as~p~~~~~~~~~~c~~~~~-~~~~~~pnp~vL~GAlVGGPd~~ 455 (492)
T PLN02308 377 QVAKRQVDYILGDNPLRMSYMVGYGSRFPQRIHHRGSSLPSVAAHPARIGCKEGSR-YFLSPNPNPNLLVGAVVGGPNVT 455 (492)
T ss_pred HHHHhccceeccCCCCCCceEeccCCCCCCchhhcCCCCCCcccCccccCCCCCcc-ccCCCCCCcceeeceeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred CCccccCCccccccccCCCCchHHHHHHHHhh
Q 019436 168 DNFGDRRDNYEQTEPATYNNAPILGILARLNA 199 (341)
Q Consensus 168 d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~ 199 (341)
|.|.|+|+||++|||||||||+|||+||+|..
T Consensus 456 d~y~D~r~~y~~nEva~dyNA~~vg~la~l~~ 487 (492)
T PLN02308 456 DAFPDSRPYFQQSEPTTYINAPLVGLLAYFSA 487 (492)
T ss_pred CCCCccccccccCceeeehhhHHHHHHHHHhc
Confidence 99999999999999999999999999999994
No 8
>PLN02613 endoglucanase
Probab=100.00 E-value=3.1e-58 Score=467.54 Aligned_cols=194 Identities=41% Similarity=0.807 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcC-CccccCCCCCChHHHH
Q 019436 10 PVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAG-RDLKCSAGNVAPAELL 87 (341)
Q Consensus 10 ~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~-~~~~c~~~~~~~~~~~ 87 (341)
..++.||+++|.|+|.++++ ++.++.+||+||.|+..||++||++|+|||+++|+|+++++. +.++|+...+++.+|+
T Consensus 289 ~~~~~yk~~~e~~~~~~~~~~~~~~~~~TPgGL~~~~~wg~lry~~~~afla~~ya~~l~~~~~~~~~c~~~~~~~~~~~ 368 (498)
T PLN02613 289 NDLAKFKTDVESFVCALMPGSSSVQIKTTPGGLLFTRDSSNLQYVTTATTVLFIYSKTLTKAGVGGIQCGSAQFSASQIR 368 (498)
T ss_pred chHHHHHHHHHHHHHHhccCCCCcccccCCCceEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCccccCCcccCHHHHH
Confidence 45789999999999999987 356799999999999999999999999999999999997765 5799998888899999
Q ss_pred HHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCC
Q 019436 88 GFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAY 167 (341)
Q Consensus 88 ~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~ 167 (341)
+||++|||||||+||+++|||||||.|+|++||||+||||+++.+|.+|.|++||+.|++++.||||+|+||||||||++
T Consensus 369 ~~a~~Qi~yiLG~Np~~~syvvG~G~n~P~~pHHR~as~p~~~~~~~~~~c~~g~~~~~~~~~Pnp~~l~GAlVGGPd~~ 448 (498)
T PLN02613 369 NFAKSQVDYILGNNPMKMSYMVGFGTKYPTQIHHRGSSIPSIQVLPEKVDCNGGFSSYYNSDTPNPNVHVGAIVGGPDSN 448 (498)
T ss_pred HHHHHhHHHhcCCCCCCCcceeccCCCCCCcccccccCCCccccCccccCCCCCccccccCCCCCCceeeeeeecCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCccccccccCCCCchHHHHHHHHhhcCCC
Q 019436 168 DNFGDRRDNYEQTEPATYNNAPILGILARLNAGHGG 203 (341)
Q Consensus 168 d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~ 203 (341)
|.|.|+|+||++|||||||||+|||+||+|......
T Consensus 449 D~y~D~r~~y~~nEva~dyNA~~vgalA~l~~~~~~ 484 (498)
T PLN02613 449 DQYSDKRSDYSHAEPTTYINAAFVGSVAALIKQVSR 484 (498)
T ss_pred CCccccccccccccceeecccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999977654
No 9
>PLN02345 endoglucanase
Probab=100.00 E-value=1.1e-57 Score=460.95 Aligned_cols=189 Identities=44% Similarity=0.810 Sum_probs=177.4
Q ss_pred CCChhHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcC-CccccCCCCCCh
Q 019436 6 GHYAPVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAG-RDLKCSAGNVAP 83 (341)
Q Consensus 6 ~~~~~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~-~~~~c~~~~~~~ 83 (341)
.+++..+++|++.+|.|||.++++ +...+.+|||||+|++.||++||++++|||+++|+|++.+.. ..+.|++..+.+
T Consensus 270 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~TpgGl~~~~~wgslrya~~~afla~vya~~l~~~~~~~~~c~~~~~~~ 349 (469)
T PLN02345 270 NTVNSGLQMYKKTAEAVMCGLLPDSPTATTSRTDGGLIWVSEWNALQHAVNSAFLAVLYSDYMLSSGIAKLSCSGKSFKP 349 (469)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCccccccCCeeEEeCCCchHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCCCH
Confidence 356788999999999999999987 345789999999999999999999999999999999998765 579999888999
Q ss_pred HHHHHHHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecC
Q 019436 84 AELLGFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGG 163 (341)
Q Consensus 84 ~~~~~~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGG 163 (341)
++|++||++|||||||+||++||||||||+|+|+|||||+||||+ +..++|.+||. |++++.||||||+||||||
T Consensus 350 ~~~~~fA~~QidYiLG~NP~~~SYvVGfG~n~P~~pHHR~As~p~----~~~~~c~~g~~-~~~~~~pn~~vL~GAlVGG 424 (469)
T PLN02345 350 SDLRKFAKSQADYILGKNPMKMSYLVGYGDKYPQYVHHRGASIPA----DAKTGCKDGFK-WLHSSEPNPNVATGALVGG 424 (469)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceEeecCCCCCCCcccccCCCCC----CCCcCCCCCcc-cccCCCCCCceeccceecC
Confidence 999999999999999999999999999999999999999999986 35689999995 9999999999999999999
Q ss_pred CCCCCCccccCCccccccccCCCCchHHHHHHHHhh
Q 019436 164 PDAYDNFGDRRDNYEQTEPATYNNAPILGILARLNA 199 (341)
Q Consensus 164 P~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~ 199 (341)
||++|.|.|+|+||++|||++|+||+||++||+|..
T Consensus 425 Pd~~D~y~D~r~~y~~nEva~y~nA~~vg~la~l~~ 460 (469)
T PLN02345 425 PFQNDTFVDSRDNSMQNEPTTYNSALLVGLLSSLVT 460 (469)
T ss_pred CCccCCccccccccccccceeehhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999995
No 10
>PLN02909 Endoglucanase
Probab=100.00 E-value=1.3e-57 Score=461.45 Aligned_cols=189 Identities=42% Similarity=0.734 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHHH
Q 019436 10 PVFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLG 88 (341)
Q Consensus 10 ~~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~~ 88 (341)
..+++|++.||.|+|.++++ +...+.+||+||+|+..|||+||+++++||+++|+|++.+..+.++|++....+++|++
T Consensus 296 ~~~~~y~~~ad~~~~~~~~~~~~~~~~~TpgGl~~~~~wgn~rya~~aafLa~~ya~~l~~~~~~~~c~~~~~~~~~y~~ 375 (486)
T PLN02909 296 KGLQSYKQQADSFVCSVLPGSPFHQVFITPGGMIHLRDGANSQYVTSTAFLFSVYSDILRRHNQKVMCGNQQFDSTRLMA 375 (486)
T ss_pred hhHHHHHHHHHHHHHHhccCCCCcccccCCCceeEecCCChHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCHHHHHH
Confidence 45789999999999999877 44578899999999999999999999999999999999877788999988889999999
Q ss_pred HHHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCCC
Q 019436 89 FAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYD 168 (341)
Q Consensus 89 ~A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~d 168 (341)
||++|||||||+||+++|||||||+|+|+|||||+||||+... +.+|+|++||++|++++.||||+|+||||||||.+|
T Consensus 376 fA~~QidYiLG~NP~~~SYVVGfG~n~P~~pHHR~as~~~~~~-~~~~~c~~g~~~~~~~~~pn~~vL~GAlVGGPd~~D 454 (486)
T PLN02909 376 FAKQQIDYLLGANPQGRSYMVGFGPNPPKQPHHRGASVPVLPA-NTPVNCGLSFVEWFNKDRPNPNELTGAIVGGPDRQD 454 (486)
T ss_pred HHHHHHHHhcCCCCCCCceEeccCCCCcCCccccccCCCCccc-CcccCCCCcccccccCCCCCcceeccceecCCCCCC
Confidence 9999999999999999999999999999999999999998654 678999999999999999999999999999999999
Q ss_pred CccccCCccccccccCCCCchHHHHHHHHhh
Q 019436 169 NFGDRRDNYEQTEPATYNNAPILGILARLNA 199 (341)
Q Consensus 169 ~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~ 199 (341)
.|.|+|+||++|||||||||+|||+||+|..
T Consensus 455 ~y~D~r~~y~~nE~a~dyNA~~vg~lA~l~~ 485 (486)
T PLN02909 455 NFVDKRWNSSYTEPCTYINSLAVGVLAKLAA 485 (486)
T ss_pred CccccccccccCcceeecchHHHHHHHHHhc
Confidence 9999999999999999999999999999975
No 11
>PLN03009 cellulase
Probab=100.00 E-value=1.7e-54 Score=441.05 Aligned_cols=191 Identities=46% Similarity=0.857 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHhhCC-CCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHHHH
Q 019436 11 VFERYQQKAEYFMCSCLGK-GSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGF 89 (341)
Q Consensus 11 ~l~~y~~~a~~f~~~~~~~-~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~~~ 89 (341)
.++.|++.||.|+|.++++ .+..+.+||+||+|+..|+++||++++|||+++|++++......++|+....+..+|++|
T Consensus 302 ~~~~~~~~ad~~~~~~~~~~~~~~v~~t~~g~~~~~~~sn~~~a~~aafl~l~yA~~l~~~~~~~~~~~~~~~~~~y~~~ 381 (495)
T PLN03009 302 SLQSYKASADSFMCTLIPESSSSHVEYTPGGLIYKPGGSNLQHATTISFLLLVYANYLSRSSQSVNCGNLTIGPDSLRQQ 381 (495)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCccccCCCCeEEeCCCChHHHHHHHHHHHHHHHHHhhhcccccccccCcCCHHHHHHH
Confidence 4689999999999999876 455799999999999999999999999999999999998777779999988899999999
Q ss_pred HHhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCCCC
Q 019436 90 AKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDN 169 (341)
Q Consensus 90 A~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~d~ 169 (341)
|++|||||||+||+++|||||||+|+|+|||||+|++|.+.++|..+.|.+|+. |++.+.||||+|+||||||||.+|+
T Consensus 382 A~~Q~dYiLG~Np~~~SYVvGyG~~~p~~pHHR~as~~~~~~~~~~~~c~~g~~-~~~~~~p~p~vl~GaLVGGP~~~d~ 460 (495)
T PLN03009 382 AKRQVDYILGDNPMGLSYMVGYSERYPQRIHHRGSSLPSIKDHPEAIACKEGSV-YFNSSNPNPNVLVGAVVGGPGEDDS 460 (495)
T ss_pred HHHHHHHhcCCCCCCCceEecCCCCCcCchhhccccCCccccccccccCccCcc-ccCCCCCCCCcccceEeeCCCCCCC
Confidence 999999999999999999999999999999999999999888899999999995 9999999999999999999999999
Q ss_pred ccccCCccccccccCCCCchHHHHHHHHhhcCC
Q 019436 170 FGDRRDNYEQTEPATYNNAPILGILARLNAGHG 202 (341)
Q Consensus 170 y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~ 202 (341)
|.|+|++|++||||||||||||++||+|...+|
T Consensus 461 y~D~r~~y~~NEvaidyNA~lv~~lA~l~~~~~ 493 (495)
T PLN03009 461 YEDDRDDFRKSEPTTYINAPFVGVLAYFAANPG 493 (495)
T ss_pred CCcccccccccchhhhhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999997543
No 12
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=100.00 E-value=4.1e-42 Score=344.68 Aligned_cols=161 Identities=42% Similarity=0.726 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCceeeCCCcceeecCCChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHHHHH
Q 019436 11 VFERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLGFA 90 (341)
Q Consensus 11 ~l~~y~~~a~~f~~~~~~~~~~~~~~TpgGl~~~~~Wgs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~~~A 90 (341)
..++|++.++.|+|.++......+.+||+||+|...||+++|+++++||+++|+++.. ..+.+|+++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~WGs~~~~~~~a~l~~~~~~~~~------------~~~~~y~~~a 351 (444)
T PF00759_consen 284 AREQYKSAADKFLNKWLNDGYGSVPYTPGGLAWIYEWGSNRYAANAAFLALAYAKYDL------------TGDQEYRDFA 351 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTBSEBCTTSSBESESTTHHHHHHHHHHHHHHHHHTCH------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcccCccccccccCCCccHHHHHHHHHHHHHHhccc------------CChHHHHHHH
Confidence 4788999999999999876555689999999999999999999999999999996511 2579999999
Q ss_pred HhcchhhhCCCCCCcceEeeeCCCCCCCCCCCCCccccccCCCCccccCCCccccccCCCCCCCCccceeecCCCCCCCc
Q 019436 91 KSQVDYILGDNPRATSYMVGYGNNYPQRVHHRASSIVSIKVNPSFVSCRGGYATWFSSKGSDPNLLVGAVVGGPDAYDNF 170 (341)
Q Consensus 91 ~~QidYiLG~Np~g~SYvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~C~~G~~~~~~~~~~np~vl~GAlVGGP~~~d~y 170 (341)
++|||||||+||+++|||||||+|+|++||||.+|. .| ++++++..+.|||++|+||||||||..|+|
T Consensus 352 ~~qldyiLG~Np~~~SyV~G~G~~~p~~pHHr~~s~----------~~--~~~~~~~~~~pn~~~l~GalvGGP~~~~~y 419 (444)
T PF00759_consen 352 QSQLDYILGRNPFGQSYVTGYGENSPQHPHHRASSA----------HC--SWDDGINSPPPNPHVLYGALVGGPNSADSY 419 (444)
T ss_dssp HHHHHHHHTTSTT--BSBTTSSSSBBSS-B-HHCHH----------HT--CCSSTSTSSSS-SS--TT-BBS-SSTTS--
T ss_pred HHHhhhhcCcCCCCceeeecCCCCCCCCCcCchhhc----------cc--cccccCCCCCCCccCccccccCCCCccCCc
Confidence 999999999999999999999999999999999871 12 234567778999999999999999999999
Q ss_pred cccCCccccccccCCCCchHHHHHH
Q 019436 171 GDRRDNYEQTEPATYNNAPILGILA 195 (341)
Q Consensus 171 ~D~r~~y~~nEvaid~NA~lv~~lA 195 (341)
.|+|++|++|||||||||+||++||
T Consensus 420 ~D~~~~~~~nEvaid~NA~l~~~lA 444 (444)
T PF00759_consen 420 VDDRSSYSTNEVAIDYNAPLVGALA 444 (444)
T ss_dssp --STT-TTTHBBBHHHHHHHHHHHH
T ss_pred cCCCcccccchHHHHHHHHHHHHhC
Confidence 9999999999999999999999997
No 13
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=99.88 E-value=2e-22 Score=159.01 Aligned_cols=79 Identities=43% Similarity=0.865 Sum_probs=74.8
Q ss_pred eeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEE-cCCceecCCccccCCCCCeEEEEEEeC
Q 019436 249 IAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTN-LGNAYGFPSWLNNLAAGKSLEFVYIHT 327 (341)
Q Consensus 249 v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~-~~n~~tLPs~~~~I~pG~S~tFGYI~~ 327 (341)
|+|+|+++++|.++++.|+||+|+|+|+|.++|+++.|.++++.++||||++ .++.|+||+|+.+|+||++|+||||+.
T Consensus 1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FGYI~~ 80 (80)
T PF09478_consen 1 ITITQTLVNSWTENGQTYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFGYISQ 80 (80)
T ss_pred CEEEEEEEeEEEeCCEEEEEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEEEEEEeC
Confidence 6899999999999999999999999999999999999999977799999999 557899999999999999999999973
No 14
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=98.93 E-value=1.5e-09 Score=89.11 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=63.0
Q ss_pred eEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCC----CCCccccEE--cCCc--eecCCccccCCCCCeEE
Q 019436 250 AIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKL----YGPLWGLTN--LGNA--YGFPSWLNNLAAGKSLE 321 (341)
Q Consensus 250 ~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l----~~~iWnv~~--~~n~--~tLPs~~~~I~pG~S~t 321 (341)
+++.+++++|.+| |+.+|+|+|.+..+|++|+|.++-. +.++||.+. .++. ++.++|+..|+||++.+
T Consensus 2 tv~~~v~~~W~~G----f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~ 77 (101)
T PF00553_consen 2 TVTYTVTNSWGGG----FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVT 77 (101)
T ss_dssp EEEEEEEEESSSE----EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEE
T ss_pred EEEEEEecccCCC----eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEE
Confidence 4455789999888 9999999999999999999888731 567999864 4454 56799999999999999
Q ss_pred EEEEeCCC
Q 019436 322 FVYIHTAN 329 (341)
Q Consensus 322 FGYI~~~~ 329 (341)
|||+..+.
T Consensus 78 ~Gf~~~~~ 85 (101)
T PF00553_consen 78 FGFQASGS 85 (101)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99996654
No 15
>smart00637 CBD_II CBD_II domain.
Probab=98.59 E-value=2.4e-07 Score=74.34 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=56.3
Q ss_pred cccccCCeEEEEEEEEEEeCCCCceeeeEEEec--C--CCCCccccEE--cCCce--ecCCccccCCCCCeEEEEEEe-C
Q 019436 257 TSWISNGKRYYRYSTIVTNKSAKTLKNLKLSIS--K--LYGPLWGLTN--LGNAY--GFPSWLNNLAAGKSLEFVYIH-T 327 (341)
Q Consensus 257 ~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~--~--l~~~iWnv~~--~~n~~--tLPs~~~~I~pG~S~tFGYI~-~ 327 (341)
++|..| ++.+|+|+|++..+|.+|.|.++ . .+.++|+.+. .++.| +.++|+..|+||++.+|||+. .
T Consensus 2 ~~W~~G----~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~~~ 77 (92)
T smart00637 2 SDWGSG----FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQGKT 77 (92)
T ss_pred CcCCCC----EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEecC
Confidence 679888 89999999999999999988766 2 2678999975 33444 456999999999999999998 5
Q ss_pred C
Q 019436 328 A 328 (341)
Q Consensus 328 ~ 328 (341)
+
T Consensus 78 G 78 (92)
T smart00637 78 G 78 (92)
T ss_pred C
Confidence 5
No 16
>COG5297 CelA Cellobiohydrolase A (1,4-beta-cellobiosidase A) [Carbohydrate transport and metabolism]
Probab=97.78 E-value=7.5e-05 Score=74.02 Aligned_cols=81 Identities=21% Similarity=0.385 Sum_probs=62.4
Q ss_pred CCCCCCCCceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEec--CCCCCccccE--EcCCce--ecCCcccc
Q 019436 240 PAPASSSGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSIS--KLYGPLWGLT--NLGNAY--GFPSWLNN 313 (341)
Q Consensus 240 ptp~p~~~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~--~l~~~iWnv~--~~~n~~--tLPs~~~~ 313 (341)
|+|.|+ ..|++..++.+.|..| ++-+|+|+|++.++ ++|.+++. ..+..+|+.. .+++.+ +--.|+.+
T Consensus 456 p~p~p~-~ni~~~i~~~~~w~~g----~cerv~vtnt~ss~-s~w~~t~~~kg~iq~lw~a~ws~~gd~l~asg~d~nkt 529 (544)
T COG5297 456 PNPDPT-KNITSSITVDSDWHTG----YCERVKVTNTGSSR-SSWTVTIPLKGTIQTLWSATWSLSGDKLIASGLDWNKT 529 (544)
T ss_pred CCCCCc-cCceeEEEeccccccc----ceeEEEeeccCCCC-cceEEEEeeccchhhhhhccccccCCeeeeeccccccc
Confidence 345563 6688888999999999 88999999999765 55555444 5567788875 355553 45599999
Q ss_pred CCCCCeEEEEEEe
Q 019436 314 LAAGKSLEFVYIH 326 (341)
Q Consensus 314 I~pG~S~tFGYI~ 326 (341)
|+|+...+|||+.
T Consensus 530 l~png~~efgfc~ 542 (544)
T COG5297 530 LEPNGTTEFGFCA 542 (544)
T ss_pred cCCCCcceeeccc
Confidence 9999999999985
No 17
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=96.58 E-value=0.021 Score=51.70 Aligned_cols=88 Identities=20% Similarity=0.355 Sum_probs=61.5
Q ss_pred CceeEEEEEecccccCCeEE-EEEEEEEEeCCCCce-eeeEEEecCC--------CCCccccEE--cC-C----------
Q 019436 247 GAIAIQQKLTTSWISNGKRY-YRYSTIVTNKSAKTL-KNLKLSISKL--------YGPLWGLTN--LG-N---------- 303 (341)
Q Consensus 247 ~~v~i~q~v~~sW~~gg~~y-~q~~VtItN~g~~~I-~~~~i~~~~l--------~~~iWnv~~--~~-n---------- 303 (341)
..|.|... .+.|..|..+| .+-+++|+|++.++| -+.+|.+|-. ..+=|++.. ++ +
T Consensus 34 ~~ldv~v~-~~gf~~GD~NYPI~Pkl~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~NiGGL~ 112 (180)
T PF06483_consen 34 EALDVSVS-FTGFKLGDSNYPINPKLTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNNIGGLK 112 (180)
T ss_pred ceEEEEEE-eCCcccCCCCCCcCCcEEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCCcccccC
Confidence 55555544 46677665555 378999999999999 5788888721 234566632 21 1
Q ss_pred ------ceecCCccccCCCCCeEEEEEEeCC---CCceEEEE
Q 019436 304 ------AYGFPSWLNNLAAGKSLEFVYIHTA---NAADVSVS 336 (341)
Q Consensus 304 ------~~tLPs~~~~I~pG~S~tFGYI~~~---~~a~l~V~ 336 (341)
.++||+|+ +|+||+|+++-++-.= .++|++|.
T Consensus 113 gdfHrvs~tlp~wq-slapG~s~~~~~~YyLPiSgPsN~tv~ 153 (180)
T PF06483_consen 113 GDFHRVSFTLPAWQ-SLAPGASVELDMVYYLPISGPSNFTVN 153 (180)
T ss_pred CceEEEEEECCCcc-ccCCCCEEEEeEEEEeccCCCceEEEE
Confidence 17899997 8999999998887332 28888885
No 18
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=84.14 E-value=7.7 Score=33.51 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=47.2
Q ss_pred EEEEEEEEeCCCCceeeeEEEecCCCCCccccEE-cC-CceecCCcccc-------CCCCCeEEEEEEeCCC----CceE
Q 019436 267 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTN-LG-NAYGFPSWLNN-------LAAGKSLEFVYIHTAN----AADV 333 (341)
Q Consensus 267 ~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~-~~-n~~tLPs~~~~-------I~pG~S~tFGYI~~~~----~a~l 333 (341)
+-++++|+|.|.+++++.+|.++=. ..-|.... .. -.+.+-.+... |+||++-.|-.|.... ..++
T Consensus 64 ~~v~g~V~N~g~~~i~~c~i~~~l~-~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~p~~~~~~~ 142 (149)
T PF09624_consen 64 FYVDGTVTNTGKFTIKKCKITVKLY-NDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYPPYFGNYNI 142 (149)
T ss_pred EEEEEEEEECCCCEeeEEEEEEEEE-eCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCCccCCCceE
Confidence 6688999999999999999988721 11222211 11 12444345444 9999999999997764 4566
Q ss_pred EEEEE
Q 019436 334 SVSAY 338 (341)
Q Consensus 334 ~V~~~ 338 (341)
.++..
T Consensus 143 ~~~~~ 147 (149)
T PF09624_consen 143 RVKSY 147 (149)
T ss_pred EEEEE
Confidence 66543
No 19
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=78.71 E-value=55 Score=31.77 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=18.0
Q ss_pred CCeEEEEEEeCCCCceEEEEEEEe
Q 019436 317 GKSLEFVYIHTANAADVSVSAYTL 340 (341)
Q Consensus 317 G~S~tFGYI~~~~~a~l~V~~~~~ 340 (341)
|.+++|.|-.....-.+++.+|.+
T Consensus 172 ~~~L~f~F~~~~~~~~~~L~~v~l 195 (306)
T PF01299_consen 172 GWNLTFTFTKNNTSNSFYLSSVSL 195 (306)
T ss_pred ccEEEEEEEecCCCCcEEEEEEEE
Confidence 458899998776567778887765
No 20
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=74.77 E-value=6.9 Score=29.97 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=32.5
Q ss_pred EEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEEEEEeCC
Q 019436 267 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIHTA 328 (341)
Q Consensus 267 ~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFGYI~~~ 328 (341)
..+.++|+|.+..++.++.|.++- =.=|.+... .-.++ .|+||++.++-|-..-
T Consensus 7 ~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~~~~~--~~~~~----~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLTNVSLSLSL--PEGWTVSAS--PASVP----SLPPGESVTVTFTVTV 60 (78)
T ss_dssp EEEEEEEE--SSS-BSS-EEEEE----TTSE---E--EEEE------B-TTSEEEEEEEEEE
T ss_pred EEEEEEEEECCCCceeeEEEEEeC--CCCccccCC--ccccc----cCCCCCEEEEEEEEEC
Confidence 578899999999999999998874 256863221 12332 7999999998887553
No 21
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=56.71 E-value=87 Score=23.94 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEEEEEeCC
Q 019436 267 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIHTA 328 (341)
Q Consensus 267 ~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFGYI~~~ 328 (341)
.+..++|+|.|.....++.+.+-.-...+ ....+ ..|++|++.+|-|-...
T Consensus 21 ~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-------~~~~i----~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 21 VTITVTVKNNGTADAENVTVRLYLDGNSV-------STVTI----PSLAPGESETVTFTWTP 71 (101)
T ss_dssp EEEEEEEEE-SSS-BEEEEEEEEETTEEE-------EEEEE----SEB-TTEEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCCCCEEEEEEECCcee-------ccEEE----CCcCCCcEEEEEEEEEe
Confidence 67889999999998888887654211111 11111 56888887777776554
No 22
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=55.48 E-value=89 Score=25.18 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=33.7
Q ss_pred ccccc--CCeEEEEEEEEEEeCCCCcee----eeEEEecCCCCCccccEEcCCceecC--CccccCCCCCeEEEEEE--e
Q 019436 257 TSWIS--NGKRYYRYSTIVTNKSAKTLK----NLKLSISKLYGPLWGLTNLGNAYGFP--SWLNNLAAGKSLEFVYI--H 326 (341)
Q Consensus 257 ~sW~~--gg~~y~q~~VtItN~g~~~I~----~~~i~~~~l~~~iWnv~~~~n~~tLP--s~~~~I~pG~S~tFGYI--~ 326 (341)
+.+.. .+..|..++|+|+|.+..++. ++.|.-++ -..+. .+... .... .....|+||++.+.-.+ .
T Consensus 26 ~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~-g~~~~-~~~~~--~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 26 NEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSD-GNKYD-PDFSA--SSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp S-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT---B---EEE-C--CCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred ccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCC-CCEEc-ccccc--hhccccccccEECCCCEEEEEEEEEE
Confidence 45553 468899999999999997663 23333221 11222 11111 1111 33467999998775544 4
Q ss_pred CCC--CceEEE
Q 019436 327 TAN--AADVSV 335 (341)
Q Consensus 327 ~~~--~a~l~V 335 (341)
... +..|.+
T Consensus 102 p~~~~~~~l~~ 112 (123)
T PF11611_consen 102 PKDDKPYTLEY 112 (123)
T ss_dssp STT-GG-EEEE
T ss_pred CCCCccEEEEE
Confidence 433 345544
No 23
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.58 E-value=82 Score=28.63 Aligned_cols=76 Identities=13% Similarity=0.308 Sum_probs=50.8
Q ss_pred CceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEEEEEe
Q 019436 247 GAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIH 326 (341)
Q Consensus 247 ~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFGYI~ 326 (341)
-.|.+.-.+.++..-.|++ ..++++|.|.|..+..+++|.-+....+.+.+. .|. .--+| ..|+||++++.-|+.
T Consensus 21 a~llv~K~il~~~~v~g~~-v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lv-sG~--~s~~~-~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 21 ARLLVSKQILNKYLVEGED-VTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELV-SGS--LSASW-ERIPPGENVSHSYVV 95 (181)
T ss_pred cEEEEEEeeccccccCCcE-EEEEEEEEECCCCeEEEEEEECCCCCccccEec-cCc--eEEEE-EEECCCCeEEEEEEE
Confidence 3456665667777654433 567799999999999999996655444566542 221 11123 689999999888875
Q ss_pred C
Q 019436 327 T 327 (341)
Q Consensus 327 ~ 327 (341)
.
T Consensus 96 ~ 96 (181)
T PF05753_consen 96 R 96 (181)
T ss_pred e
Confidence 4
No 24
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=54.33 E-value=22 Score=25.66 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.6
Q ss_pred EEEEEEEEEeCCCCceeeeEEEe
Q 019436 266 YYRYSTIVTNKSAKTLKNLKLSI 288 (341)
Q Consensus 266 y~q~~VtItN~g~~~I~~~~i~~ 288 (341)
...|.++|+|+|..+++++.|.-
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~D 35 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVTD 35 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEEE
Confidence 36899999999999999888753
No 25
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=46.00 E-value=74 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCeEEEEEEEEEEeCCCCce
Q 019436 262 NGKRYYRYSTIVTNKSAKTL 281 (341)
Q Consensus 262 gg~~y~q~~VtItN~g~~~I 281 (341)
.++-++.|.|+|+|.+..++
T Consensus 26 ~~~y~f~Y~ItI~N~~~~~v 45 (127)
T PRK05461 26 EGRYVFAYTITIENLGRVPV 45 (127)
T ss_pred CCEEEEEEEEEEEECCCCCE
Confidence 35678999999999987764
No 26
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=42.65 E-value=99 Score=24.94 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=14.3
Q ss_pred CeEEEEEEEEEEeCCCCce
Q 019436 263 GKRYYRYSTIVTNKSAKTL 281 (341)
Q Consensus 263 g~~y~q~~VtItN~g~~~I 281 (341)
.+-++.|.|+|+|.+..+|
T Consensus 10 ~~y~f~Y~I~I~N~~~~~v 28 (90)
T PF04379_consen 10 NRYVFAYRIRIENHSDESV 28 (90)
T ss_dssp TBEEEEEEEEEEE-SSS-E
T ss_pred CeEEEEEEEEEEECCCCCE
Confidence 4567899999999998865
No 27
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=37.48 E-value=51 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=28.2
Q ss_pred CceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEe
Q 019436 247 GAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSI 288 (341)
Q Consensus 247 ~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~ 288 (341)
..+.++.........=|+ -..|.++|+|.|..+..++.|.-
T Consensus 24 ~~~~~~k~~~~~~~~~Gd-~v~ytitvtN~G~~~a~nv~v~D 64 (76)
T PF01345_consen 24 PDLSITKTVNPSTANPGD-TVTYTITVTNTGPAPATNVVVTD 64 (76)
T ss_pred CCEEEEEecCCCcccCCC-EEEEEEEEEECCCCeeEeEEEEE
Confidence 456665555555543232 36799999999999999987743
No 28
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=33.52 E-value=90 Score=27.56 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=44.5
Q ss_pred CCceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEE
Q 019436 246 SGAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLE 321 (341)
Q Consensus 246 ~~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~t 321 (341)
...+.+......+=.-....+...+++++|++..+|++|.|.-.++...+ ....|+.= ..|.||++++
T Consensus 66 G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~-------~i~~F~~I-~~L~pg~s~t 133 (145)
T PF14796_consen 66 GKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGM-------RIHEFPEI-ESLEPGASVT 133 (145)
T ss_pred CCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCc-------EeeccCcc-cccCCCCeEE
Confidence 46677776665543333445788999999999999999999877642111 11223222 4688888765
No 29
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=32.95 E-value=21 Score=39.33 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHhcchhhhCCCCC----CcceEeeeC
Q 019436 80 NVAPAELLGFAKSQVDYILGDNPR----ATSYMVGYG 112 (341)
Q Consensus 80 ~~~~~~~~~~A~~QidYiLG~Np~----g~SYvvG~G 112 (341)
.+++++-.+.-+.-||+|+|..-+ |.=|+.-|-
T Consensus 644 l~Tpqea~a~y~a~vnf~n~~Gh~~is~GPf~L~ayd 680 (872)
T COG3889 644 LFTPQEAYAAYVAAVNFINGYGHAQISNGPFYLEAYD 680 (872)
T ss_pred eeCHHHHHHHHHHHHHHHhccCceEeccCceEEEEeC
Confidence 357777777778889999885432 555666665
No 30
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=29.66 E-value=52 Score=32.91 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=30.6
Q ss_pred CceeEEEEEecccccCCeEEEEEEEEEEeCCCCceeeeEEEecC
Q 019436 247 GAIAIQQKLTTSWISNGKRYYRYSTIVTNKSAKTLKNLKLSISK 290 (341)
Q Consensus 247 ~~v~i~q~v~~sW~~gg~~y~q~~VtItN~g~~~I~~~~i~~~~ 290 (341)
..+.++.++...--..|. -.-++|.|+|+++++||.|++-+..
T Consensus 193 ~~lhLevsLDkEiYyHGE-~isvnV~V~NNsnKtVKkIK~~V~Q 235 (402)
T KOG3865|consen 193 GPLHLEVSLDKEIYYHGE-PISVNVHVTNNSNKTVKKIKISVRQ 235 (402)
T ss_pred CceEEEEEecchheecCC-ceeEEEEEecCCcceeeeeEEEeEe
Confidence 556666555544433332 2578899999999999999998774
No 31
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=29.36 E-value=53 Score=32.79 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCceeeCCCcceeec-CC---ChHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCChHHHHH
Q 019436 13 ERYQQKAEYFMCSCLGKGSRNVQKTPGGLIFRQ-RW---NNMQFVTSASFLATVYSDYLASAGRDLKCSAGNVAPAELLG 88 (341)
Q Consensus 13 ~~y~~~a~~f~~~~~~~~~~~~~~TpgGl~~~~-~W---gs~~y~~n~afl~~~ya~~l~~~~~~~~c~~~~~~~~~~~~ 88 (341)
.+|.+.|+.-+..++.. -.-....||+.|.. .+ ....-+.+++..+.+++++... .+.++|++
T Consensus 112 ~~yL~~A~~i~~~~~~~--wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~-----------t~~~~Yl~ 178 (370)
T PF03663_consen 112 PKYLDLAKEIFDFLISG--WDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRI-----------TGDQTYLD 178 (370)
T ss_dssp -HHHHHHHHHHHHHHHT--B-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHH-----------H--HHHHH
T ss_pred HHHHHHHHHHHHHHHHh--cCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHh-----------cCChHHHH
Confidence 36888888887766632 11112368888762 22 1122223333333344443221 14678999
Q ss_pred HHHhcchhhhC
Q 019436 89 FAKSQVDYILG 99 (341)
Q Consensus 89 ~A~~QidYiLG 99 (341)
+|++..||+..
T Consensus 179 ~A~~~~~W~~~ 189 (370)
T PF03663_consen 179 WAKKIYDWMRD 189 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999987
No 32
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=29.32 E-value=2.6e+02 Score=29.39 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=8.3
Q ss_pred eCCCCceeeeEEEec
Q 019436 275 NKSAKTLKNLKLSIS 289 (341)
Q Consensus 275 N~g~~~I~~~~i~~~ 289 (341)
|+..+.+--+.|-+.
T Consensus 83 nn~~~A~p~f~~Pvp 97 (465)
T PF01690_consen 83 NNSVKAIPMFVFPVP 97 (465)
T ss_pred cCcceeeeEEEEecC
Confidence 555556655555554
No 33
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=29.08 E-value=1.4e+02 Score=23.42 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=25.8
Q ss_pred EEEEEEEeCCCCceeeeEEEecC----------C-CCCccccEEcCC-ceecCCccccCCCCCeEEEEEEeCC
Q 019436 268 RYSTIVTNKSAKTLKNLKLSISK----------L-YGPLWGLTNLGN-AYGFPSWLNNLAAGKSLEFVYIHTA 328 (341)
Q Consensus 268 q~~VtItN~g~~~I~~~~i~~~~----------l-~~~iWnv~~~~n-~~tLPs~~~~I~pG~S~tFGYI~~~ 328 (341)
...++|+|++.++| .|.+.. . -.-+|-- +.+ .|+---=..+|+||++.+|-..-..
T Consensus 3 ~~~l~v~N~s~~~v---~l~f~sgq~~D~~v~d~~g~~vwrw--S~~~~FtQal~~~~l~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 3 EFTLTVTNNSDEPV---TLQFPSGQRYDFVVKDKEGKEVWRW--SDGKMFTQALQEETLEPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEE-SSS-E---EEEESSS--EEEEEE-TT--EEEET--TTT-------EEEEE-TT-EEEEEEEESS
T ss_pred EEEEEEEeCCCCeE---EEEeCCCCEEEEEEECCCCCEEEEe--cCCchhhheeeEEEECCCCEEEEEEEECC
Confidence 56788899988664 232221 0 1236622 222 2332222357999999999876544
No 34
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=27.97 E-value=2.2e+02 Score=25.56 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=34.8
Q ss_pred EEEEEEEEEeCCCCcee--eeEEEecCCCCCcc-------ccEE-cCCce--ecCCccccCCCCCeEEEEEEeCC-----
Q 019436 266 YYRYSTIVTNKSAKTLK--NLKLSISKLYGPLW-------GLTN-LGNAY--GFPSWLNNLAAGKSLEFVYIHTA----- 328 (341)
Q Consensus 266 y~q~~VtItN~g~~~I~--~~~i~~~~l~~~iW-------nv~~-~~n~~--tLPs~~~~I~pG~S~tFGYI~~~----- 328 (341)
-+..+++++|.+..++. +|.|-++.. ..|= .|+. .|+-+ +.=.=-..|+||+++++=|+...
T Consensus 31 c~~~~ltl~n~~~~~~~~~dW~IYf~~i-r~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~w~~~~ 109 (164)
T PF03173_consen 31 CFRAELTLTNPGDAPLPKSDWAIYFSSI-RPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEYWQVSE 109 (164)
T ss_dssp EEEEEEEEEE-SS-B------EEEEE-S-S-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES---SG
T ss_pred ceEEEEEEEcCCCccCCCCCeEEEEecc-eeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccccEEEE
Confidence 37889999999988765 599988852 2222 2232 33333 32222257999999999998554
Q ss_pred -C-CceEEEE
Q 019436 329 -N-AADVSVS 336 (341)
Q Consensus 329 -~-~a~l~V~ 336 (341)
. +++++|.
T Consensus 110 tD~mp~~Yv~ 119 (164)
T PF03173_consen 110 TDAMPGWYVV 119 (164)
T ss_dssp GGS----EEE
T ss_pred ccCCCceEEE
Confidence 2 6677664
No 35
>COG1470 Predicted membrane protein [Function unknown]
Probab=26.74 E-value=91 Score=32.74 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=34.9
Q ss_pred EEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEE
Q 019436 267 YRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEF 322 (341)
Q Consensus 267 ~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tF 322 (341)
....+.|.|.|+-++++++|.++... =|.++..++ +. ..|.||++-+.
T Consensus 399 ~~i~i~I~NsGna~LtdIkl~v~~Pq--gWei~Vd~~--~I----~sL~pge~~tV 446 (513)
T COG1470 399 KTIRISIENSGNAPLTDIKLTVNGPQ--GWEIEVDES--TI----PSLEPGESKTV 446 (513)
T ss_pred ceEEEEEEecCCCccceeeEEecCCc--cceEEECcc--cc----cccCCCCcceE
Confidence 35678999999999999999999743 399876654 22 34666665443
No 36
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=26.58 E-value=3.1e+02 Score=23.65 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=38.4
Q ss_pred eeEEEEEecccccCCeEEE--EEEEEEEeCCCCcee--eeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEEEE
Q 019436 249 IAIQQKLTTSWISNGKRYY--RYSTIVTNKSAKTLK--NLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVY 324 (341)
Q Consensus 249 v~i~q~v~~sW~~gg~~y~--q~~VtItN~g~~~I~--~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFGY 324 (341)
|--+|+..++=..+++.+| +++|.|-|.+.++|+ .+.|......+.--+++..+..++ ...|.||++.+ |+
T Consensus 29 V~At~~~~Gs~sv~~k~~ytktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~f~ldTVd~~L~----~g~lK~g~s~k-G~ 103 (124)
T PF14263_consen 29 VYATEKSQGSVSVGGKSFYTKTFDVTVANLSDKDIDLSKMCFKAYSPDGKEFKLDTVDEELT----SGTLKPGESVK-GI 103 (124)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEEEEEE-GGGG-----SEE-TT-EEE-EE
T ss_pred EEEEecCCccEeecCccceEEEEEEEEecCCCCccccccchhhhccccCCEEEecccchhhh----hccccCCCcee-EE
Confidence 4446667777777776654 478999999999873 555554432233444433222222 14688998876 44
Q ss_pred E
Q 019436 325 I 325 (341)
Q Consensus 325 I 325 (341)
+
T Consensus 104 a 104 (124)
T PF14263_consen 104 A 104 (124)
T ss_dssp E
T ss_pred E
Confidence 4
No 37
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=26.22 E-value=2.7e+02 Score=21.73 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=27.8
Q ss_pred CeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEEcCCceecCCccccCCCCCeEEEE
Q 019436 263 GKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFV 323 (341)
Q Consensus 263 g~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFG 323 (341)
|+.| ...++|+|.|..+. .+.+.......+.+.++. + ...|+||++.++=
T Consensus 19 g~~~-~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v~~-------~--~g~l~PG~~~~~~ 68 (102)
T PF14874_consen 19 GQTY-SRTVTLTNTSSIPA-RFRVRQPESLSSFFSVEP-------P--SGFLAPGESVELE 68 (102)
T ss_pred CCEE-EEEEEEEECCCCCE-EEEEEeCCcCCCCEEEEC-------C--CCEECCCCEEEEE
Confidence 3444 46699999998763 444444332234443321 1 1348888866553
No 38
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=26.10 E-value=1e+02 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=29.6
Q ss_pred CeEEEEEEEEEEeCCCCceeeeEEEecCCCCCccccEE--------cCCceecCCccccCCCCCeEEE
Q 019436 263 GKRYYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTN--------LGNAYGFPSWLNNLAAGKSLEF 322 (341)
Q Consensus 263 g~~y~q~~VtItN~g~~~I~~~~i~~~~l~~~iWnv~~--------~~n~~tLPs~~~~I~pG~S~tF 322 (341)
+.--+-|.|+|.|+|..+++= .+..|-|+- .|.+ .--=|.-|+||++|.+
T Consensus 26 ~RyvfaYtitI~N~g~~~vqL--------lsR~W~ITd~~g~v~eV~G~G--VVGeQP~l~PG~~y~Y 83 (126)
T COG2967 26 ERYVFAYTVTIRNLGEVPVQL--------LSRYWLITDGNGRVTEVEGEG--VVGEQPLLAPGEEYQY 83 (126)
T ss_pred ceEEEEEEEEEecCCCcccee--------eeeEEEEecCCCcEEEEEcCc--eeccccccCCCCceEE
Confidence 344567999999999877642 233444421 1111 1123456899998764
No 39
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.89 E-value=2.4e+02 Score=32.81 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=41.4
Q ss_pred EEEEEEEEEeCCCCceeeeEEEecCC-CC-----CccccEEcCCc-------eecCC--cc--ccCCCCCeEEEEEEeCC
Q 019436 266 YYRYSTIVTNKSAKTLKNLKLSISKL-YG-----PLWGLTNLGNA-------YGFPS--WL--NNLAAGKSLEFVYIHTA 328 (341)
Q Consensus 266 y~q~~VtItN~g~~~I~~~~i~~~~l-~~-----~iWnv~~~~n~-------~tLPs--~~--~~I~pG~S~tFGYI~~~ 328 (341)
-.++.|+++|.|..+|..+.|.+... .. -.|.--..... ..+|. |. ..|+||++++|-+-..+
T Consensus 800 ~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~ 879 (1185)
T PF08626_consen 800 KQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPPGESATFTVEVDG 879 (1185)
T ss_pred EEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCCCCEEEEEEEecC
Confidence 47899999999999999999987621 10 01211000000 22332 11 18999999999988766
Q ss_pred CCc
Q 019436 329 NAA 331 (341)
Q Consensus 329 ~~a 331 (341)
.+.
T Consensus 880 ~~~ 882 (1185)
T PF08626_consen 880 KPG 882 (1185)
T ss_pred ccc
Confidence 544
No 40
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=22.75 E-value=38 Score=30.17 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=8.1
Q ss_pred ccceeecCCCCCC
Q 019436 156 LVGAVVGGPDAYD 168 (341)
Q Consensus 156 l~GAlVGGP~~~d 168 (341)
+.=.+|||||...
T Consensus 34 f~VmvVGGPN~R~ 46 (151)
T PF06052_consen 34 FIVMVVGGPNQRT 46 (151)
T ss_dssp EEEEEEESSB--S
T ss_pred eEEEEEcCCCCCC
Confidence 3446899999543
No 41
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=22.36 E-value=3.1e+02 Score=26.82 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=34.8
Q ss_pred EEEEEEEEeCCCCceeeeEEEec-CCCCCccccEEcCCceecCCccccCCCCCeEEEEEEe
Q 019436 267 YRYSTIVTNKSAKTLKNLKLSIS-KLYGPLWGLTNLGNAYGFPSWLNNLAAGKSLEFVYIH 326 (341)
Q Consensus 267 ~q~~VtItN~g~~~I~~~~i~~~-~l~~~iWnv~~~~n~~tLPs~~~~I~pG~S~tFGYI~ 326 (341)
.++-|.++|+|..++.=..|... +......-+.+ | +|--.|+..|.||+..+|-|.-
T Consensus 101 ~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iq--N-fTa~~y~~~V~pg~~aT~~YsF 158 (285)
T PF03896_consen 101 VKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQ--N-FTAVRYNREVPPGEEATFPYSF 158 (285)
T ss_pred EEEEEEEEeCCCCCEEEEEEeeeecCccccceEEE--e-ecccccCcccCCCCeEEEEEEE
Confidence 67889999999865543333322 11111111111 1 5555678899999999999973
No 42
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.91 E-value=82 Score=24.66 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh
Q 019436 4 KAGHYAPVFERYQQKAEYFMCSCL 27 (341)
Q Consensus 4 ~~~~~~~~l~~y~~~a~~f~~~~~ 27 (341)
++|.|++.+.-|++.+|.|++.++
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~~~~~ 41 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLIYAEM 41 (76)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999864
No 43
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=21.23 E-value=2.2e+02 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=13.9
Q ss_pred CCCCeEEEEEEeCCC-Cce
Q 019436 315 AAGKSLEFVYIHTAN-AAD 332 (341)
Q Consensus 315 ~pG~S~tFGYI~~~~-~a~ 332 (341)
++|+...|=||+.|+ .+|
T Consensus 140 P~g~~~~~qfINSGtA~aN 158 (226)
T PHA02662 140 PRGRRLRVALVNSGHAAAN 158 (226)
T ss_pred CCCceEEEEEEecCchhhh
Confidence 457788999999987 444
Done!