RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019437
(341 letters)
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 554 bits (1430), Expect = 0.0
Identities = 189/335 (56%), Positives = 245/335 (73%), Gaps = 1/335 (0%)
Query: 6 DAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGE 65
A T+++T+TRFV+ E+ + G+ + LL+ + K + +AV KAG+A L G+AG
Sbjct: 4 AAFDTNIVTLTRFVM-EEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGS 62
Query: 66 TNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDG 125
TNV G++ KKLDVLSND+ + L SS TC+LVSEED+ AI VEP KRG+Y V FDPLDG
Sbjct: 63 TNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDG 122
Query: 126 SSNIDCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVN 185
SSNIDC VSIGTIFGIY + EP+ D LQPG N++AAGY +YGS+ LVL+ +GVN
Sbjct: 123 SSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVN 182
Query: 186 GFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSL 245
F LDP++GEFIL D+KI KKG IYS+NEG AK +D +Y+++ KFP D S+P
Sbjct: 183 CFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGA 242
Query: 246 RYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKQRA 305
RY+GSMVADVHRTL+YGGIFMYP +KKSP GKLR+LYE PM+++ME+AGG + TGK+
Sbjct: 243 RYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAV 302
Query: 306 LDLVPKKIHERSPIFLGSYDDVEEIKALYAAEEKK 340
LD+VP IH+R+PI LGS +DV E+ +Y K
Sbjct: 303 LDIVPTDIHQRAPIILGSPEDVTELLEIYQKHAAK 337
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 553 bits (1426), Expect = 0.0
Identities = 189/331 (57%), Positives = 245/331 (74%), Gaps = 1/331 (0%)
Query: 10 TDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQ 69
TD+ T+TRFV+ E+ + G+ + LL+ + K + SAV KAG+A L G+AG TNV
Sbjct: 45 TDVNTLTRFVM-EEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVT 103
Query: 70 GEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI 129
G++ KKLDVLSND+ + L SS TC+LVSEED+ AI VEP KRG+Y V FDPLDGSSNI
Sbjct: 104 GDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNI 163
Query: 130 DCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
DC VS+GTIFGIY K + EP+ D LQPG N++AAGY +YGS+ LVL+ GVN F L
Sbjct: 164 DCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFML 223
Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSLRYIG 249
DP++GEFIL D+KI KKGKIYS+NEG AK++D +Y+++ KFP D S+P RY+G
Sbjct: 224 DPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVG 283
Query: 250 SMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKQRALDLV 309
SMVADVHRTL+YGGIF+YP +KKSPNGKLR+LYE PM+++ME+AGG + TGK+ LD++
Sbjct: 284 SMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVI 343
Query: 310 PKKIHERSPIFLGSYDDVEEIKALYAAEEKK 340
P IH+R+P+ LGS DDV E +Y +
Sbjct: 344 PTDIHQRAPVILGSPDDVLEFLKVYEKHSAQ 374
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 539 bits (1391), Expect = 0.0
Identities = 145/327 (44%), Positives = 207/327 (63%), Gaps = 3/327 (0%)
Query: 12 LMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGE 71
+ T+ F++ +Q + + G+ + LLS I LG K + +NKAGL ++G +G NVQGE
Sbjct: 1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGE 60
Query: 72 EQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDC 131
Q+KLD+ +N+ AL + + SEE++E + E + +Y V+ DPLDGSSNID
Sbjct: 61 VQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDV 120
Query: 132 GVSIGTIFGIYMMKD--SHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
VS+GTIF IY T +D LQPGN +AAGY +YGSS LV +TG GV+ FT
Sbjct: 121 NVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTY 180
Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSS-PKSLRYI 248
DPSLG F L ++ P+KGK YS+NEGN + KY++ C+ ++ P + RYI
Sbjct: 181 DPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYI 240
Query: 249 GSMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKQRALDL 308
GS+VAD HR LL GGI++YP P+GKLR+LYE PM+FL EQAGG++ GK+R LD+
Sbjct: 241 GSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKASDGKERILDI 300
Query: 309 VPKKIHERSPIFLGSYDDVEEIKALYA 335
+P+ +H+R F+G+ VE+++
Sbjct: 301 IPETLHQRRSFFVGNDHMVEDVERFIR 327
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 525 bits (1353), Expect = 0.0
Identities = 172/351 (49%), Positives = 227/351 (64%), Gaps = 18/351 (5%)
Query: 2 DHEADAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIG 61
+++T+T ++L +Q + + +I+LS I + CK + S V +A ++ L G
Sbjct: 8 SETKKRSGYEIITLTSWLL-QQEQKGIIDAELTIVLSSISMACKQIASLVQRANISNLTG 66
Query: 62 LAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFD 121
G N+QGE+QKKLDV+SN+VF L SSGRT I+ SEE++ + VE S G Y VVFD
Sbjct: 67 TQGAVNIQGEDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFD 126
Query: 122 PLDGSSNIDCGVSIGTIFGIYMMKD-----------------SHEPTLDDVLQPGNNMLA 164
PLDGSSN+D VS G+IFGIY D + + +V QPG+N+LA
Sbjct: 127 PLDGSSNLDAAVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLA 186
Query: 165 AGYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDG 224
AGYCMY SS VL+ G GV FTLDP GEF+LT +++IPK GKIYS NEGN K WD
Sbjct: 187 AGYCMYSSSVIFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDE 246
Query: 225 PTAKYVEKCKFPKDGSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEV 284
KY++ K P P S RYIGS+V D HRTLLYGGI+ YPRDKKS NGKLR+LYE
Sbjct: 247 NLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYEC 306
Query: 285 FPMSFLMEQAGGQSFTGKQRALDLVPKKIHERSPIFLGSYDDVEEIKALYA 335
PMSF++EQAGG+ G QR LD+ P +IH+R P+++GS ++VE+++ A
Sbjct: 307 APMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 357
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 478 bits (1232), Expect = e-171
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 28/353 (7%)
Query: 3 HEADAHRTDLMTITRFV-----LNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLA 57
H H L++ K + + L+ I+ C + SA+ +
Sbjct: 5 HHHHHHENLYFQGMESPSALPSLDQLLKEQGADQTLTDLILAILDRCGKIASALQGTSV- 63
Query: 58 KLIGLAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYC 117
G N G+EQ +DV++ ++ SS + + +E+ E K G +
Sbjct: 64 ---DKVGSVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFI 120
Query: 118 VVFDPLDGSSNIDCGVSIGTIFGIYMMKD---SHEPTLDDVLQPGNNMLAAGYCMYGSSC 174
+ +DPLDGSS IDC ++G+I I+ + + + + G +A+ +YG
Sbjct: 121 LCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVVYGPRT 180
Query: 175 TLVLSTGSGVN-----GFTLDPSL---GEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPT 226
T V++ G LD + G+FI I P + KI+S A
Sbjct: 181 TGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKP-QAKIFSPANLRAAQDLPAY 239
Query: 227 AKYVEKCKFPKDGSSPKSLRYIGSMVADVHRTLL-YGGIFMYPRDKKSPNGKLRVLYEVF 285
+ +E +LRY G +V DV++ + G+F P K +P KLR+ +EV
Sbjct: 240 KQLIEFWM-----EKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAP-AKLRMCFEVL 293
Query: 286 PMSFLMEQAGGQSFTGKQRALDLVPKKIHERSPIFLGSYDDVEEIKALYAAEE 338
++ ++E AGG++ G++ LD+ + + RS + GS D+++ ++ +AA
Sbjct: 294 AIALVVEAAGGRTSNGQKSLLDVAIEHMDHRSALCCGSADEIKRMEETFAALS 346
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 4e-04
Identities = 62/364 (17%), Positives = 110/364 (30%), Gaps = 106/364 (29%)
Query: 11 DLMTITRFVLNE-------QSKHPESRGD--FSILLS---HIVLGCKFVCSAVNK--AGL 56
D+ + + +L++ SK S F LLS +V KFV + L
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFL 94
Query: 57 AKLIGLAGETNVQGEEQK----KLDVLSND--VFVKALISSG------RTCILVSEEDEE 104
I E + + D L ND VF K +S R L+ +
Sbjct: 95 MSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAK 151
Query: 105 AIFVEPSK-RGRYCVVFDPLDGSSNIDCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNML 163
+ ++ G+ V D S + C + F I+ + + + + VL+ +L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCL-SYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 164 AAGYCMYGSS-----------------------------CTLVL---STGSGVNGF---- 187
+ S C LVL N F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 188 -----TLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKF---PKD- 238
T + +F+ I ++ K+ KY++ C+ P++
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLD-CRPQDLPREV 322
Query: 239 -GSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKK------------SPNGKLRVLYE-- 283
++P+ L I + D T + + K P + R +++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRL 378
Query: 284 -VFP 286
VFP
Sbjct: 379 SVFP 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.005
Identities = 57/360 (15%), Positives = 110/360 (30%), Gaps = 142/360 (39%)
Query: 2 DHEADAHRTDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVC--SAVNKAGLAKL 59
+A+ T + I ++ ++P + D LLS I + C + + AKL
Sbjct: 202 TLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAKL 255
Query: 60 IGLAGETNVQGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVV 119
+G GE + L + + L+++ + ++E D F ++ V+
Sbjct: 256 LGFT-----PGELRSYLKGAT--GHSQGLVTA----VAIAETDSWESFFVSVRKA-ITVL 303
Query: 120 FDPLDGSSNIDCGVSIGT----IFGIY-----MMKDSHE-----PTLDDVLQPGNNMLAA 165
F IG + +++DS E P+ P ML+
Sbjct: 304 F-------------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS------P---MLS- 340
Query: 166 GYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIY-S-VNEGNAKNWD 223
++ T + + +++ + +P ++ S VN
Sbjct: 341 ------------------ISNLTQE-QVQDYV-NKTNSHLPAGKQVEISLVN-------- 372
Query: 224 GPTAKYVEKCKFPKDGSSPKSLRYIGSMV--------ADVHRTLLYGGIFMYPRDKKSPN 275
G V P+SL + + D R P ++
Sbjct: 373 GAKNLVV--------SGPPQSLYGLNLTLRKAKAPSGLDQSRI---------PFSERKLK 415
Query: 276 GKLRVLYEVFPMS--F---LMEQA----------GGQSFTGKQRALDLVPKKIHERSPIF 320
R L P++ F L+ A SF K D+ +I P++
Sbjct: 416 FSNRFL----PVASPFHSHLLVPASDLINKDLVKNNVSFNAK----DI---QI----PVY 460
Score = 35.4 bits (81), Expect = 0.030
Identities = 27/208 (12%), Positives = 60/208 (28%), Gaps = 86/208 (41%)
Query: 184 VNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVE----KCKF---- 235
++ ++ P L+H ++ + PTA + + +F
Sbjct: 1 MDAYSTRP----LTLSHGSLE-------HV--------LLVPTASFFIASQLQEQFNKIL 41
Query: 236 --PKDG-------SSPKSL--RYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEV 284
P +G ++P L +++G V+ + P + L +
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLG-YVSSLVE----------PSKVGQFDQVLNLCLTE 90
Query: 285 FPMSFL-----------MEQAGGQSFTGKQ-------RALDLVPKKIHERSP-------- 318
F +L + Q + + A + + ++S
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 319 -----IFL-----GSYDD-VEEIKALYA 335
+ G+ DD EE++ LY
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Score = 31.2 bits (70), Expect = 0.60
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 69/240 (28%)
Query: 122 PL---DGSSNIDCGVSIGTIFGIYM--MKDS-----HEPT----LDDVLQPGNNM-LAAG 166
PL GS ++ + + T +++ EPT DD +P L
Sbjct: 8 PLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGK 63
Query: 167 YCMYGSSCTLVLSTGSGVNGFTLDPSLGEF---ILTHPDI-------------KIPKKGK 210
+ Y SS LV + G L+ L EF L DI + K +
Sbjct: 64 FLGYVSS--LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 211 IYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSLRYIGSMVADVHRTLLYGG---IFMY 267
+ KN+ TA+ + K F K +S R +G A + ++GG Y
Sbjct: 122 L-------IKNYI--TARIMAKRPFDKKSNSA-LFRAVGEGNAQLV--AIFGGQGNTDDY 169
Query: 268 PRDKKSPNGKLRVLYEVFP--MSFLMEQAGGQSFTGKQRALDLVPKKIHERSPIFLGSYD 325
+ LR LY+ + + L++ + L + + + +F +
Sbjct: 170 FEE-------LRDLYQTYHVLVGDLIKFSAET--------LSELIRTTLDAEKVFTQGLN 214
Score = 30.8 bits (69), Expect = 0.81
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 29/105 (27%)
Query: 253 ADVHRTLLYGG-----IFMYPRDKKSPNG-----KLRVLYEVFPMSFLMEQAGGQSFTGK 302
AD H YG + P + G ++R Y + + E +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY----SAMIFETIVDGKLKTE 1704
Query: 303 Q--RALDLVPKKIHERSP-------------IFLGSYDDVEEIKA 332
+ + ++ RS + L E++K+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 31.1 bits (71), Expect = 0.47
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 77 DVLSNDVFVKALISSGRTCI-LVSEEDEEAIFVEPSKRGRYCVVFDPLDG 125
D +++ V L + ++SEE + + +V DPLDG
Sbjct: 64 DRKAHEAIVAILNETP---FPVLSEEGKHMDYAVRRGWDTLWIV-DPLDG 109
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural
genomics, PSI-2, protein structure initiative; NMR
{Pseudomonas aeruginosa} SCOP: d.58.5.5
Length = 97
Score = 28.4 bits (63), Expect = 1.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 248 IGSMVADVHRTLLYGGIFMYPR 269
IG +V D + ++L G + + PR
Sbjct: 47 IGHLVLDQNMSILEGSLGVIPR 68
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 28.6 bits (64), Expect = 2.0
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 69 QGEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAI---FVEPSKRGRYCVVFD 121
+ KL + + + + I + E + + I + S +
Sbjct: 40 SNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIEL 95
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 28.9 bits (64), Expect = 3.0
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 107 FVEPSKRGRYCVVFDPLDGSSNIDC-GVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLA 164
R + F + +++ G + T + H+ + + G N +A
Sbjct: 127 LNVDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVA 185
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 27.5 bits (62), Expect = 6.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 43 GCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNDVFV 85
G K V + VNKA ++ + G V + D+F
Sbjct: 196 GAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTC---DIFA 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,233,042
Number of extensions: 316408
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 20
Length of query: 341
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,077,219
Effective search space: 1007073093
Effective search space used: 1007073093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)