RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019437
(341 letters)
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 328
Score = 435 bits (1119), Expect = e-154
Identities = 187/326 (57%), Positives = 243/326 (74%), Gaps = 1/326 (0%)
Query: 10 TDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQ 69
T+++T+TRFV+ E+ + G+ + LL+ + K + +AV KAG+A L G+AG TNV
Sbjct: 1 TNIVTLTRFVM-EEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVT 59
Query: 70 GEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI 129
G++ KKLDVLSND+ + L SS TC+LVSEED+ AI VEP KRG+Y V FDPLDGSSNI
Sbjct: 60 GDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNI 119
Query: 130 DCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
DC VSIGTIFGIY + EP+ D LQPG N++AAGY +YGS+ LVL+ +GVN F L
Sbjct: 120 DCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFML 179
Query: 190 DPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSSPKSLRYIG 249
DP++GEFIL D+KI KKG IYS+NEG AK +D +Y+++ KFP D S+P RY+G
Sbjct: 180 DPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVG 239
Query: 250 SMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKQRALDLV 309
SMVADVHRTL+YGGIFMYP +KKSP GKLR+LYE PM+++ME+AGG + TGK+ LD+V
Sbjct: 240 SMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIV 299
Query: 310 PKKIHERSPIFLGSYDDVEEIKALYA 335
P IH+R+PI LGS +DV E+ +Y
Sbjct: 300 PTDIHQRAPIILGSPEDVTELLEIYQ 325
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 413 bits (1064), Expect = e-146
Identities = 173/341 (50%), Positives = 226/341 (66%), Gaps = 18/341 (5%)
Query: 12 LMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGE 71
++T+T ++L ++ K + +I+LS I + CK + S V +A ++ L G G N+QGE
Sbjct: 1 IITLTSWLLQQEQKGIID-AELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGE 59
Query: 72 EQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDC 131
+QKKLDV+SN+VF L SSGRT I+ SEE++ + VE S G Y VVFDPLDGSSN+D
Sbjct: 60 DQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDA 119
Query: 132 GVSIGTIFGIYMMKDSHEP-----------------TLDDVLQPGNNMLAAGYCMYGSSC 174
VS G+IFGIY D P + +V QPG+N+LAAGYCMY SS
Sbjct: 120 AVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSV 179
Query: 175 TLVLSTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCK 234
VL+ G GV FTLDP GEF+LT +++IPK GKIYS NEGN K WD KY++ K
Sbjct: 180 IFVLTIGKGVFVFTLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLK 239
Query: 235 FPKDGSSPKSLRYIGSMVADVHRTLLYGGIFMYPRDKKSPNGKLRVLYEVFPMSFLMEQA 294
P P S RYIGS+V D HRTLLYGGI+ YPRDKKS NGKLR+LYE PMSF++EQA
Sbjct: 240 EPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQA 299
Query: 295 GGQSFTGKQRALDLVPKKIHERSPIFLGSYDDVEEIKALYA 335
GG+ G QR LD+ P +IH+R P+++GS ++VE+++ A
Sbjct: 300 GGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA 340
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 75
Score = 29.3 bits (66), Expect = 0.13
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 248 IGSMVADVHRTLLYGGIFMYPR 269
IG +V D + ++L G + + PR
Sbjct: 25 IGHLVLDQNMSILEGSLGVIPR 46
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 30.7 bits (68), Expect = 0.24
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
+ RG Y L +D +++ +
Sbjct: 364 DECPRGLYSGAVVMLSADGGLDAALTLRAAY 394
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 29.9 bits (66), Expect = 0.52
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
EP +R +C L N+D ++I T+
Sbjct: 383 EPQRRNAWCGSIGYLSFCGNMDTSITIRTLT 413
>d1qdla_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 422
Score = 29.1 bits (64), Expect = 0.76
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E KRG Y + N + ++I T F
Sbjct: 351 EEYKRGPYAGAVGFISADGNAEFAIAIRTAF 381
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 28.8 bits (63), Expect = 0.92
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
++RG Y N+D + I + +
Sbjct: 439 RSTRRGSYGGRVGYFTAVRNLDTCIVIRSAY 469
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 184
Score = 28.2 bits (62), Expect = 1.1
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 110 PSKRGRYCVVFDPLDGSSNIDC-GVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLA 164
R + F + +++ G + T + H+ + + G N +A
Sbjct: 89 DDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVA 144
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase
{Vibrio cholerae [TaxId: 666]}
Length = 364
Score = 27.3 bits (59), Expect = 2.6
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 256 HRTLLYGGIFMYPRDKKSPNGKLRVLYE---------VFPMSFLMEQ 293
L G Y + + V+ E P++ L ++
Sbjct: 316 GPIQLVNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQK 362
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 26.9 bits (58), Expect = 3.6
Identities = 19/193 (9%), Positives = 44/193 (22%), Gaps = 16/193 (8%)
Query: 77 DVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI-----DC 131
VL+ + ++ + + + + DP+D + D
Sbjct: 109 KVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQYIKGSADI 168
Query: 132 GVSIG----------TIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTG 181
+ G + G+Y ++ P + + QP + G + G
Sbjct: 169 TPNQGIFPSGLQCVTVLIGVYDIQT-GVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLG 227
Query: 182 SGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPKDGSS 241
+ ++ S + + T K +
Sbjct: 228 TNIHSLLPPVSTRSNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFR 287
Query: 242 PKSLRYIGSMVAD 254
Y V
Sbjct: 288 AAGAGYKSLCVIL 300
>d2fn0a1 d.161.1.1 (A:2-434) Salicylate synthetase Irp9 {Yersinia
enterocolitica [TaxId: 630]}
Length = 433
Score = 25.9 bits (56), Expect = 7.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E + R Y LD + D + + ++F
Sbjct: 364 EKTPRELYSGAILLLD-DTRFDAALVLRSVF 393
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 24.6 bits (53), Expect = 9.5
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 79 LSNDVFVKALISSGRTCILVSEEDEEAIFVE-PSKRGRYCVVFDPLDGSSNIDCGVSIGT 137
S D + T + + D+ +I + P + +C + + + + T
Sbjct: 16 DSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAET 75
Query: 138 IFGIYMMKDSHEPTLDDVLQPGNNML 163
+ ++ LQ G + +
Sbjct: 76 YVDGQRISETTMLQSGMRLQFGTSHV 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,267,071
Number of extensions: 59743
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 13
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)