BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019438
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINN 133
L G+ L+ RG SF K A + A A++I NN
Sbjct: 113 LNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNN 147
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 92 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 137
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 71 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 116
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 71 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 116
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 74 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 119
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 91 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 136
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 74 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 119
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 71 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 116
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 74 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 119
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 98 KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCES 144
++TG A+ +H G + ANFAE+ S + I K E +++ +
Sbjct: 91 EITG-AVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDK 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,815,744
Number of Sequences: 62578
Number of extensions: 388112
Number of successful extensions: 678
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 13
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)