Query 019438
Match_columns 341
No_of_seqs 312 out of 1319
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2442 Uncharacterized conser 100.0 3.7E-73 7.9E-78 556.9 18.1 301 19-325 14-315 (541)
2 cd02132 PA_GO-like PA_GO-like: 100.0 1.3E-30 2.8E-35 224.8 16.8 139 42-180 1-139 (139)
3 cd02129 PA_hSPPL_like PA_hSPPL 99.9 1.7E-26 3.7E-31 194.1 12.2 117 43-180 1-120 (120)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 4.6E-23 9.9E-28 175.0 13.4 116 62-180 2-126 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 5.2E-22 1.1E-26 166.8 13.8 110 66-180 1-116 (118)
6 cd02123 PA_C_RZF_like PA_C-RZF 99.9 1.3E-21 2.7E-26 171.4 15.7 116 56-175 20-142 (153)
7 cd02122 PA_GRAIL_like PA _GRAI 99.9 7.5E-22 1.6E-26 170.1 13.6 111 62-180 17-138 (138)
8 cd02125 PA_VSR PA_VSR: Proteas 99.9 1.4E-21 3.1E-26 166.2 13.6 112 66-180 1-127 (127)
9 cd04818 PA_subtilisin_1 PA_sub 99.8 5.4E-20 1.2E-24 153.7 13.4 114 63-180 1-118 (118)
10 cd04813 PA_1 PA_1: Protease-as 99.8 2.6E-20 5.7E-25 156.3 10.6 102 62-170 5-109 (117)
11 cd04816 PA_SaNapH_like PA_SaNa 99.8 7.1E-19 1.5E-23 148.1 13.9 114 63-180 4-122 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.8 6.9E-18 1.5E-22 142.0 14.0 113 58-180 7-122 (122)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.7 4.3E-17 9.3E-22 139.1 11.9 89 86-180 38-129 (129)
14 cd04817 PA_VapT_like PA_VapT_l 99.7 1.2E-16 2.6E-21 137.8 13.7 96 78-178 35-137 (139)
15 KOG4628 Predicted E3 ubiquitin 99.6 9.2E-16 2E-20 149.0 11.0 226 59-313 35-280 (348)
16 PF02225 PA: PA domain; Inter 99.6 3.7E-15 8.1E-20 119.8 6.4 90 79-170 6-101 (101)
17 cd00538 PA PA: Protease-associ 99.6 1.5E-14 3.3E-19 120.4 10.2 94 86-180 27-126 (126)
18 KOG3920 Uncharacterized conser 99.6 2.6E-15 5.7E-20 129.9 5.4 141 35-182 24-173 (193)
19 cd04819 PA_2 PA_2: Protease-as 99.4 1.1E-12 2.4E-17 111.3 12.4 100 78-179 22-126 (127)
20 cd02133 PA_C5a_like PA_C5a_lik 99.4 1E-12 2.2E-17 113.6 12.0 93 78-180 25-120 (143)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 3.6E-12 7.8E-17 109.3 8.4 109 72-180 10-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.2 4.5E-11 9.7E-16 100.2 9.6 83 88-176 36-122 (126)
23 cd02128 PA_TfR PA_TfR: Proteas 98.9 6.7E-09 1.5E-13 93.5 8.9 91 78-171 28-154 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.4 1.7E-06 3.7E-11 80.3 9.3 53 79-134 45-105 (220)
25 cd04814 PA_M28_1 PA_M28_1: Pro 98.4 1.3E-06 2.7E-11 75.9 7.9 57 79-135 20-100 (142)
26 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 1.8E-06 3.8E-11 75.8 7.9 88 79-169 20-131 (151)
27 cd04820 PA_M28_1_1 PA_M28_1_1: 98.3 3.1E-06 6.8E-11 73.0 7.7 58 78-135 21-96 (137)
28 cd02131 PA_hNAALADL2_like PA_h 97.9 1.7E-05 3.6E-10 69.4 4.9 38 97-134 37-74 (153)
29 PF04258 Peptidase_A22B: Signa 97.6 1.4E-05 3.1E-10 77.3 0.0 59 240-298 2-66 (298)
30 smart00730 PSN Presenilin, sig 96.8 0.0012 2.5E-08 62.6 3.8 54 245-299 4-57 (249)
31 cd04821 PA_M28_1_2 PA_M28_1_2: 95.8 0.011 2.5E-07 52.1 4.5 38 97-134 46-102 (157)
32 KOG2443 Uncharacterized conser 95.4 0.012 2.6E-07 57.7 3.0 92 188-298 23-118 (362)
33 COG4882 Predicted aminopeptida 90.1 1.2 2.6E-05 44.6 7.7 113 98-214 87-203 (486)
34 KOG2195 Transferrin receptor a 73.1 4.1 9E-05 44.2 4.3 38 97-134 181-218 (702)
35 COG5540 RING-finger-containing 44.1 9.7 0.00021 37.3 0.7 33 104-136 150-182 (374)
36 PF05434 Tmemb_9: TMEM9; Inte 40.7 24 0.00052 31.0 2.6 36 245-300 50-85 (149)
37 PF10177 DUF2371: Uncharacteri 39.1 42 0.00091 29.3 3.8 18 246-263 108-127 (141)
38 PRK13718 conjugal transfer pro 38.5 23 0.0005 27.9 1.9 21 249-269 44-64 (84)
39 PF01736 Polyoma_agno: Polyoma 36.8 36 0.00079 24.9 2.6 31 4-34 23-53 (62)
40 PF11100 TrbE: Conjugal transf 36.1 29 0.00063 26.1 2.0 22 249-270 36-57 (66)
41 cd04468 S1_eIF5A S1_eIF5A: Euk 32.1 1.6E+02 0.0034 22.5 5.6 36 143-182 21-56 (69)
42 PF07172 GRP: Glycine rich pro 31.5 39 0.00085 27.4 2.3 12 1-12 1-12 (95)
43 COG1786 Swiveling domain assoc 29.9 2E+02 0.0044 24.7 6.4 73 97-179 47-122 (131)
44 PF06305 DUF1049: Protein of u 25.2 44 0.00095 24.5 1.5 46 171-217 2-49 (68)
45 cd03028 GRX_PICOT_like Glutare 25.0 1.5E+02 0.0033 22.9 4.7 66 100-173 7-87 (90)
46 PF01287 eIF-5a: Eukaryotic el 24.7 1.8E+02 0.0039 22.1 4.8 40 137-181 18-57 (69)
47 PF05151 PsbM: Photosystem II 24.2 68 0.0015 20.8 1.9 19 249-267 9-27 (31)
48 PRK10824 glutaredoxin-4; Provi 24.1 1.2E+02 0.0026 25.3 4.1 71 100-174 14-95 (115)
49 PF08029 HisG_C: HisG, C-termi 22.7 1.5E+02 0.0033 22.9 4.1 31 101-133 39-72 (75)
50 PF11057 Cortexin: Cortexin of 22.1 1E+02 0.0022 24.1 3.0 24 242-265 21-44 (81)
51 PF11395 DUF2873: Protein of u 21.4 91 0.002 21.1 2.2 12 273-284 20-31 (43)
52 PF05324 Sperm_Ag_HE2: Sperm a 20.8 1.2E+02 0.0026 23.3 3.0 35 5-39 3-40 (73)
53 PHA02621 agnoprotein; Provisio 20.7 1E+02 0.0022 22.9 2.6 29 4-32 23-51 (68)
54 COG3275 LytS Putative regulato 20.6 80 0.0017 33.1 2.7 29 258-286 12-56 (557)
55 PLN02601 beta-carotene hydroxy 20.5 1.6E+02 0.0034 28.7 4.4 101 197-308 138-244 (303)
56 PLN02280 IAA-amino acid hydrol 20.3 97 0.0021 32.1 3.3 17 1-17 1-17 (478)
No 1
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=100.00 E-value=3.7e-73 Score=556.95 Aligned_cols=301 Identities=46% Similarity=0.780 Sum_probs=284.8
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCeEEEEeeeeecCCcceeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCCCC
Q 019438 19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK 98 (341)
Q Consensus 19 ~~~~~~d~~~~d~~~~~~p~c~~~f~lv~v~~w~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~~ 98 (341)
....++|..|+++..|+.|||+|+||+||+++|+++.+..++.++.++||..++...+++...++..++|.|.|+++.++
T Consensus 14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k 93 (541)
T KOG2442|consen 14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK 93 (541)
T ss_pred heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence 66788999999999999999999999999999999999999999999999999998888888888899999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEE
Q 019438 99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV 178 (341)
Q Consensus 99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V 178 (341)
++|++++|.||||+|++|+++||++||+|++|+||.+++..|+|.+.++..+++||++||++++|+++.+....+++|++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred EEecCCCCCccceeehhHHHHHHHhhheeeeccchhhhhHHHHHhhhcCCCCCcccccCCCCCCcEEeecceehhhHHHH
Q 019438 179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA 258 (341)
Q Consensus 179 ~l~sp~~p~~D~s~v~i~lmAv~Tv~~~~~WS~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~e~v~~t~~~a~~FVv~~ 258 (341)
++|+|++|.+|+++++||+|||+||++|||||++++|+++.|+++.++++.++..++++++++|.+|++|.++++||++|
T Consensus 174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~ 253 (541)
T KOG2442|consen 174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA 253 (541)
T ss_pred EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence 99999999999999999999999999999999999999998888888766555556678889999999999999999999
Q ss_pred HHHHHHHHhhhcceehhhhhhhhhhcchhhhHHhHHHHHHhhccCCccccccCCcccccc-cccceec
Q 019438 259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLK-DNYLYEE 325 (341)
Q Consensus 259 s~~LllLyff~~~~~v~vii~iFci~~~~gL~~Cl~~l~~r~~~~~f~~~r~~~~~~~~~-~~~~~~~ 325 (341)
|+||+|||||| +||||++|+||||||++|||+||.||++|+ +++.|| .|.|..+ .+++|.+
T Consensus 254 c~~LvLlyfF~-~~~V~v~iiif~i~g~~gLy~Cl~~lv~r~---~~~~~~--~~~~~~~l~~~~~~~ 315 (541)
T KOG2442|consen 254 CGFLVLLYFFY-SYLVYVLIIIFCIGGAQGLYNCLAALVHRL---PYGAAR--FPTLAPRLGNMSYRL 315 (541)
T ss_pred HHHHHHHHHHH-HHHHHHHhhheeecccchHHHHHHHHHhhh---hhhccc--ccccccccCChhHHH
Confidence 99999999999 889999999999999999999999999999 899999 8888888 8888854
No 2
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.97 E-value=1.3e-30 Score=224.78 Aligned_cols=139 Identities=53% Similarity=0.895 Sum_probs=126.6
Q ss_pred CeEEEEeeeeecCCcceeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCCHHHHHHHHH
Q 019438 42 NFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAE 121 (341)
Q Consensus 42 ~f~lv~v~~w~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq 121 (341)
.|+||++.+|++|.+.++|.+.+|+||.++|.+..++..++++.+++.++|++++++++|+|+||+||+|+|.+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~~~g~IvLV~RG~C~F~~K~~nA~ 80 (139)
T cd02132 1 PFQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGSIALVERGECAFTEKAKIAE 80 (139)
T ss_pred CceEEEeeeccCCccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcccCCeEEEEECCCCCHHHHHHHHH
Confidence 48999999999999999999999999999998877788899999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 122 EANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 122 ~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
++||+++||||+.+++..|.+..+++..+++||+++|++++|+.|++.+++|.+|+|++
T Consensus 81 ~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 81 AGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred HcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99999999999987776776543333446799999999999999999999999998864
No 3
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.94 E-value=1.7e-26 Score=194.10 Aligned_cols=117 Identities=22% Similarity=0.391 Sum_probs=101.0
Q ss_pred eEEEEeeeeecCCcceeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHH
Q 019438 43 FVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANF 119 (341)
Q Consensus 43 f~lv~v~~w~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~---~~l~g~IaLV~RG~CsF~~Ka~n 119 (341)
||+.++++|. .+|++++++..+||++++|..+|++.+ .+++|+|+||+||+|+|.+|+++
T Consensus 1 ~~~~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~ 63 (120)
T cd02129 1 YCILYNSQWA-----------------SLPSDLDKATLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARL 63 (120)
T ss_pred CcEEECCcce-----------------ECCcchhhCcceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHH
Confidence 8999999996 899999999999999999999999887 47899999999999999999999
Q ss_pred HHHcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 120 AEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 120 Aq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
||++||+|+|||||++.. .+. .+.....+++||+++|++++|++|++.+ |+.|+|+|
T Consensus 64 Aq~aGA~aVII~nn~~~~-~~~-~~~~~~~~v~IP~v~Is~~dG~~i~~~l--~~~~~v~~ 120 (120)
T cd02129 64 AQSLGAEGLLIVSRERLV-PPS-GNRSEYEKIDIPVALLSYKDMLDIQQTF--GDSVKVAM 120 (120)
T ss_pred HHHCCCCEEEEEECCCCC-CCC-CCCCCCcCCcccEEEEeHHHHHHHHHHh--ccCcEEeC
Confidence 999999999999997542 222 2122246789999999999999999998 56677764
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.90 E-value=4.6e-23 Score=174.97 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=97.6
Q ss_pred eeeccCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC---
Q 019438 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--- 136 (341)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~--- 136 (341)
+.+|+||.++|... ...++|+.++|.++|++..+ +++|||+||+||+|+|.+|+++||++||.|+||+|+.++
T Consensus 2 ~~pa~FG~~~~~~~--~~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQFGMDLTGDK--AGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcccCCcCCCCC--CceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46899999999753 35679999999999998874 689999999999999999999999999999999987643
Q ss_pred ----ceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 137 ----LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 137 ----l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
.+.|.+.. ....+++||+++|++++|+.|++.+++|.+|++.+
T Consensus 80 ~~~~~~~m~~~~-~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 80 DTAPMFAMSGDG-DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred cccceeEeecCC-CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 34565432 12246899999999999999999999999998864
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=5.2e-22 Score=166.84 Aligned_cols=110 Identities=28% Similarity=0.502 Sum_probs=93.1
Q ss_pred cCCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC----cee
Q 019438 66 RFGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE----LFK 139 (341)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~--~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~----l~~ 139 (341)
.||..++.+ +..++|+.++|.++|++..+ +++|+|+||+||+|+|.+|+++||++||+|+||||+.++ .+.
T Consensus 1 ~~~~~~~~~---~~~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~ 77 (118)
T cd02127 1 DFGTIFNTR---YKHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVE 77 (118)
T ss_pred CCCcccccc---ccceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceE
Confidence 488888876 45578999999999998763 689999999999999999999999999999999998643 356
Q ss_pred eccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 140 m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
|.+. ....+++||+++|++++|+.|++.+++|..+++.+
T Consensus 78 m~~~--~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 78 MIQD--DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred ecCC--CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEee
Confidence 6543 22356899999999999999999999999887665
No 6
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=1.3e-21 Score=171.44 Aligned_cols=116 Identities=27% Similarity=0.428 Sum_probs=99.2
Q ss_pred cceeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCC------CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEE
Q 019438 56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK------NKLTGEAILVHRGGCSFTAKANFAEEANASAIL 129 (341)
Q Consensus 56 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~------~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avL 129 (341)
+..++....|+||...+. ++..++|+.++|.++|++.+ ....|+|+||+||+|+|.+|++|||++||+|+|
T Consensus 20 ~~~~~~~~~A~FG~~~~~---~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI 96 (153)
T cd02123 20 LTDEFDDLPANFGPIPPG---SGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI 96 (153)
T ss_pred ccceEeeecccCCCCCCC---CceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 567899999999987764 35678899999999999876 468899999999999999999999999999999
Q ss_pred EEeCCCC-ceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCE
Q 019438 130 IINNKTE-LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSV 175 (341)
Q Consensus 130 I~n~~~~-l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~ 175 (341)
|||++++ +..|.+.+.+ ..+++||+++|++++|+.|++.+..++.
T Consensus 97 I~n~~~~~~~~m~~~~~~-~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 97 VYNDESNDLISMSGNDQE-IKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EEECCCCcceeccCCCCC-CcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998754 6667654322 2478999999999999999999988876
No 7
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.88 E-value=7.5e-22 Score=170.13 Aligned_cols=111 Identities=26% Similarity=0.393 Sum_probs=92.0
Q ss_pred eeeccCCCccccccCCceeEEEEec---CCCCCCCCCCC-----CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeC
Q 019438 62 GVGARFGRTLEAKEKDASQNRLVLA---DPPDCCSKPKN-----KLTGEAILVHRGGCSFTAKANFAEEANASAILIINN 133 (341)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~---~p~~aC~~~~~-----~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~ 133 (341)
-..|+||.++|... ..+.|+.. ++.++|+++++ +++|+||||+||+|+|.+|++|||++||+++||||+
T Consensus 17 ~~~a~fg~~~~~~~---~~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~ 93 (138)
T cd02122 17 TESGRYGEHSPKEE---AKGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNN 93 (138)
T ss_pred ccccccCCCCCCCc---cEEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 35899999898764 44556544 46899998764 588999999999999999999999999999999999
Q ss_pred CC-C--ceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 134 KT-E--LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 134 ~~-~--l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
.+ . ++.|...+ ..+||+++|++++|+.|++.+++|++|+|++
T Consensus 94 ~~~~~~~~~m~~~~-----~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 94 PGTGNETVKMSHPG-----TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCceeeccCCC-----CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 75 2 55665321 2379999999999999999999999999864
No 8
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.87 E-value=1.4e-21 Score=166.17 Aligned_cols=112 Identities=29% Similarity=0.430 Sum_probs=89.9
Q ss_pred cCCCccccccCCceeEEEEec-CCCCCCCCCCC---------CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 019438 66 RFGRTLEAKEKDASQNRLVLA-DPPDCCSKPKN---------KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKT 135 (341)
Q Consensus 66 ~FG~~lp~~~~~~~~~~Lv~~-~p~~aC~~~~~---------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~ 135 (341)
.||.+ |+.. ...+.|+.+ ++.++|++.+. ..+++|+||+||+|+|.+|++|||++||+++||||+.+
T Consensus 1 ~FG~~-~yg~--~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLP-QYGG--TLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCC-CcCC--eeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 47843 4443 245667666 67899998763 36789999999999999999999999999999999976
Q ss_pred C-ceeeccCCC----CCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 136 E-LFKMVCESN----ETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 136 ~-l~~m~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
+ ++.|.+..+ ....+++||+++|++++|+.|++.+++|..|+|+|
T Consensus 78 ~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 78 EPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred CccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 5 566754222 12357899999999999999999999999999875
No 9
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.83 E-value=5.4e-20 Score=153.72 Aligned_cols=114 Identities=32% Similarity=0.481 Sum_probs=97.6
Q ss_pred eeccCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC--ce
Q 019438 63 VGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (341)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~--l~ 138 (341)
.+|+||..++........++|+..++.++|++.. .+++|||+|++||+|+|.+|+++|+++||+|+||||+.++ .+
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~ 80 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPI 80 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcce
Confidence 3799999998755456788999999999999876 4799999999999999999999999999999999998764 44
Q ss_pred eeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 139 ~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
.|... .....||+++|++++|+.|++++++|++|+++|
T Consensus 81 ~~~~~----~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 81 TMGGD----DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred eccCC----CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 45322 134579999999999999999999999998875
No 10
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.83 E-value=2.6e-20 Score=156.27 Aligned_cols=102 Identities=26% Similarity=0.489 Sum_probs=83.7
Q ss_pred eeeccCCCccccccCCceeEEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC--ce
Q 019438 62 GVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE--LF 138 (341)
Q Consensus 62 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~--l~ 138 (341)
+..|+||+.+....++. ..++|.++|++.+ .+++||||||+||+|+|.+|++|||++||+++||||+.++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~p~~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~ 79 (117)
T cd04813 5 GRYASFSPILNPHLRGS-----YKVSPTDACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLI 79 (117)
T ss_pred ccccccCCccCcccccc-----ccCCCCCCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccce
Confidence 36799998887655432 2277899999886 5799999999999999999999999999999999998753 45
Q ss_pred eeccCCCCCCCCccceEEEechhhHHHHHHHH
Q 019438 139 KMVCESNETDVDIRIPAIMLPQDAGANLEKLI 170 (341)
Q Consensus 139 ~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l 170 (341)
.|.+.+ ...+++||+++|++++|+.|+.++
T Consensus 80 ~m~~~~--~~~~v~IPav~Is~~~g~~L~~l~ 109 (117)
T cd04813 80 TMFSNG--DTDNVTIPAMFTSRTSYHLLSSLL 109 (117)
T ss_pred ecccCC--CCCCcEEEEEEEcHHHHHHHHHhc
Confidence 565432 245789999999999999998876
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=7.1e-19 Score=148.07 Aligned_cols=114 Identities=24% Similarity=0.459 Sum_probs=89.7
Q ss_pred eeccCCCccccccCCceeEEEEecCC--CCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc
Q 019438 63 VGARFGRTLEAKEKDASQNRLVLADP--PDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL 137 (341)
Q Consensus 63 ~~A~FG~~lp~~~~~~~~~~Lv~~~p--~~aC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l 137 (341)
....|++..|. ++.+++|+..++ .++|++.+ .+++|||||++||+|+|.+|+++||++||+|+||||+.++.
T Consensus 4 ~~~~~~~~~~~---~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 4 VSLSYSPSTPP---GGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred EEEeccCCCCC---CCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 34567766554 467888888764 59999865 47999999999999999999999999999999999987642
Q ss_pred eeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 138 FKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 138 ~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
. +.+..........||+++|++++|+.|++++++|.+|++++
T Consensus 81 ~-~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 G-TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred c-ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 1 11111111245689999999999999999999999998864
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.77 E-value=6.9e-18 Score=141.95 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=87.4
Q ss_pred eeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCC--CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC-
Q 019438 58 TEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK--NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK- 134 (341)
Q Consensus 58 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~--~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~- 134 (341)
..|...+..|. |.. ...++|+.. +.++|++.+ .+++||||||+||+|+|.+|+++||++||+++||||+.
T Consensus 7 ~~~~~~~~~~~---~~~---~~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 7 EAIPTTAFTYS---PAG---EVTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEEeeeecccC---CCC---CcEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 44555554444 222 345788886 468999765 46999999999999999999999999999999999987
Q ss_pred CCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 135 TELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 135 ~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
++.... .... ..+..||+++|++++|+.|++.+++|++|+++|
T Consensus 80 ~~~~~~--~~~~-~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 80 AGGLSG--TLGE-PSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred Cccccc--ccCC-CCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 333221 1111 235689999999999999999999999999875
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.72 E-value=4.3e-17 Score=139.06 Aligned_cols=89 Identities=28% Similarity=0.361 Sum_probs=72.9
Q ss_pred cCCCCCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhh
Q 019438 86 ADPPDCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDA 162 (341)
Q Consensus 86 ~~p~~aC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~ 162 (341)
+.+.++|++++ .+++|||+||+||+|+|.+|++|||++||+++||||+.++...+.. + ....+|.+.+ +++
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~--~---~~~~~~~~~~-~~~ 111 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVG--S---DADSIIAAVT-PED 111 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccC--C---CCcceeeEEe-HHH
Confidence 35779999875 3689999999999999999999999999999999999766444431 1 1234565666 999
Q ss_pred HHHHHHHHHCCCEEEEEE
Q 019438 163 GANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 163 G~~L~~~l~~G~~V~V~l 180 (341)
|++|++.+++|++|+++|
T Consensus 112 G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 112 GEAWIDALAAGSNVTVDF 129 (129)
T ss_pred HHHHHHHHhcCCeEEEeC
Confidence 999999999999999875
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.72 E-value=1.2e-16 Score=137.81 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=74.6
Q ss_pred ceeEEEEecCCCCCCCCCCCCCCCcEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEeCC--CCceeeccCCCCCCCC
Q 019438 78 ASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCS-----FTAKANFAEEANASAILIINNK--TELFKMVCESNETDVD 150 (341)
Q Consensus 78 ~~~~~Lv~~~p~~aC~~~~~~l~g~IaLV~RG~Cs-----F~~Ka~nAq~aGA~avLI~n~~--~~l~~m~~~~~~~~~~ 150 (341)
..+++|+.... .+|+....+++|||+||+||+|+ |.+|+++||++||+|+|||||. ++.+.+. ..+...+
T Consensus 35 ~~tg~lv~~g~-~g~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~--lg~~~~~ 111 (139)
T cd04817 35 SATGSLYYCGT-SGGSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPF--LVDTNND 111 (139)
T ss_pred cceEEEEEccC-CCccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCccccc--ccCCCCC
Confidence 45678888764 34755456899999999999999 9999999999999999999997 4433221 1122235
Q ss_pred ccceEEEechhhHHHHHHHHHCCCEEEE
Q 019438 151 IRIPAIMLPQDAGANLEKLIKNNSVVSV 178 (341)
Q Consensus 151 i~IPvv~Is~~~G~~L~~~l~~G~~V~V 178 (341)
++||+++|++++|++|++.+. ..++|
T Consensus 112 ~~IP~v~is~~dG~~L~~~l~--~~~tv 137 (139)
T cd04817 112 TTIPSVSVDRADGQALLAALG--QSTTV 137 (139)
T ss_pred ceEeEEEeeHHHHHHHHHHhc--CCCee
Confidence 799999999999999999884 44444
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.2e-16 Score=149.00 Aligned_cols=226 Identities=21% Similarity=0.277 Sum_probs=137.4
Q ss_pred eEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCCC------CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEe
Q 019438 59 EYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN------KLTGEAILVHRGGCSFTAKANFAEEANASAILIIN 132 (341)
Q Consensus 59 ~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~------~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n 132 (341)
+|.+.+|.||+.++.+ +..+-++.++|.+||++..+ .-..+++||+||+|+|.+|+++||++|++|+||||
T Consensus 35 sf~d~~a~f~~s~~~e---~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSE---GNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred cccCCccccCCccccc---cceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 7999999999998876 45678889999999999753 45679999999999999999999999999999999
Q ss_pred CCC--CceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEEecC--CC--CCccceeehhHHHHHHHhh--
Q 019438 133 NKT--ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP--RR--PVVDVAEVFLWLMAVGTIL-- 204 (341)
Q Consensus 133 ~~~--~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l~sp--~~--p~~D~s~v~i~lmAv~Tv~-- 204 (341)
|.. .+..|. .+ ..++.|++++++...|+.|.++...+. ...+..| -. +|.-..+.++-+++|.++.
T Consensus 112 n~~~~~lv~~~-~~---~~~v~i~~~~vs~~~ge~l~~~~~~~~--~~~~~~~~~~~~~~ws~~~~~~i~~l~v~~il~~ 185 (348)
T KOG4628|consen 112 NVGSEDLVAMA-SN---PSKVDIHIVFVSVFSGELLSSYAGRTE--FECLLIPLGFDTSPWSILAISLISLLTVVAILVT 185 (348)
T ss_pred CCCCchheeec-cC---CccceeEEEEEeeehHHHHHHhhcccc--eeeeeccccccCCcchhhhhhhhhHHHHHHHHHH
Confidence 753 255553 21 357899999999999999998653332 2222222 11 1212222355555555554
Q ss_pred heeeeccchhhhhHH--HHHhhhcCC--CCCccc-ccCCCCCCcEEeecceehhhHHHHHHHHHHHHhhhcceehhhhhh
Q 019438 205 CASYWSAWTARETAI--ELDKLLKDG--SDEFSN-MEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVV 279 (341)
Q Consensus 205 ~~~~WS~~~~r~~~~--e~~~~l~~~--~~~~~~-~~~~~~~e~v~~t~~~a~~FVv~~s~~LllLyff~~~~~v~vii~ 279 (341)
+...|.+++.+.+.. ++.+..++- .-.... .+.++++ ++ ..|++.+--|-.-.+ +.++.
T Consensus 186 ~f~i~~~~~~~~~r~~~~~~r~~k~~l~~~p~~~f~~~~~~~-----~~--------~~CaIClEdY~~Gdk--lRiLP- 249 (348)
T KOG4628|consen 186 CFFIYRIRRLIRARNRLRRNRLIKRLLKKLPVRTFTKGDDED-----AT--------DTCAICLEDYEKGDK--LRILP- 249 (348)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhhCCcEEeccccccC-----CC--------ceEEEeecccccCCe--eeEec-
Confidence 233343333322111 111111110 000000 0011111 11 134555666666632 22222
Q ss_pred hhhhcchhhhHHhHHHHHHhhcc-CCccccccCCc
Q 019438 280 LFCIGGVEGLQTCVVALLSWYVY-SSFCICFFPTP 313 (341)
Q Consensus 280 iFci~~~~gL~~Cl~~l~~r~~~-~~f~~~r~~~~ 313 (341)
|=.- -.-+|+.|++..+.. +|-|||+++.+
T Consensus 250 --C~H~--FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 250 --CSHK--FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred --CCCc--hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 4433 223699999997754 89999987743
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.57 E-value=3.7e-15 Score=119.76 Aligned_cols=90 Identities=29% Similarity=0.444 Sum_probs=63.4
Q ss_pred eeEEEEecCCC---CCCCCC---CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCcc
Q 019438 79 SQNRLVLADPP---DCCSKP---KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIR 152 (341)
Q Consensus 79 ~~~~Lv~~~p~---~aC~~~---~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~ 152 (341)
..++|+...+. ..|.+. ..+++|||||++||+|+|.+|+++||++||+|+||+|..+....+.. .....+.+
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~--~~~~~~~~ 83 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMID--SEDPDPID 83 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTC--EBTTTSTB
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccc--ccCCCCcE
Confidence 45788733322 223222 25799999999999999999999999999999999993222211111 12234679
Q ss_pred ceEEEechhhHHHHHHHH
Q 019438 153 IPAIMLPQDAGANLEKLI 170 (341)
Q Consensus 153 IPvv~Is~~~G~~L~~~l 170 (341)
||+++|++++|++|++++
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999998864
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.57 E-value=1.5e-14 Score=120.39 Aligned_cols=94 Identities=32% Similarity=0.490 Sum_probs=74.6
Q ss_pred cCCCCCCCCCC-----CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC-ceeeccCCCCCCCCccceEEEec
Q 019438 86 ADPPDCCSKPK-----NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTE-LFKMVCESNETDVDIRIPAIMLP 159 (341)
Q Consensus 86 ~~p~~aC~~~~-----~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~-l~~m~~~~~~~~~~i~IPvv~Is 159 (341)
..+..+|++.. .+++|||+|++||+|+|.+|+++||++||+|+||+|+.+. ...+... +.......||+++|+
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~-~~~~~~~~iP~~~is 105 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSV-GLESTDPSIPTVGIS 105 (126)
T ss_pred ccceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccc-cCCCCCCcEeEEEeC
Confidence 34667887753 4699999999999999999999999999999999998753 2222211 111235689999999
Q ss_pred hhhHHHHHHHHHCCCEEEEEE
Q 019438 160 QDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 160 ~~~G~~L~~~l~~G~~V~V~l 180 (341)
+++|+.|++++++|.++++++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 106 YADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred HHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999888763
No 18
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.56 E-value=2.6e-15 Score=129.90 Aligned_cols=141 Identities=26% Similarity=0.335 Sum_probs=110.0
Q ss_pred CCCCCCCCeEEEEeeeeecCCcceeEEeeecc-CCCccccccCCceeEEEEecCCCCCCCCCCC--CCCCcEEEEecCCC
Q 019438 35 KRPGCDNNFVLVKVPTWVDGGEDTEYVGVGAR-FGRTLEAKEKDASQNRLVLADPPDCCSKPKN--KLTGEAILVHRGGC 111 (341)
Q Consensus 35 ~~p~c~~~f~lv~v~~w~~g~e~~~~~~~~A~-FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~--~l~g~IaLV~RG~C 111 (341)
..|-...|+.+-.+ ..++....+|...+|. ||...|++..+ .+|+.++|..+|+.+.| ...|.|+|++||+|
T Consensus 24 ~~~v~~qD~~~F~v--lsP~~l~Yty~~~pAkdfG~~F~~r~e~---~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeC 98 (193)
T KOG3920|consen 24 YEEVENQDNMLFTV--LSPYTLAYTYQMKPAKDFGVHFPDRFEN---LELVLADPPHACEELRNEIFAPDSVALMERGEC 98 (193)
T ss_pred cceeeecceEEEEe--cCcccEEEEEEecchhhhccccchhhcC---cceeecCChhHHHHHhhcccCCCcEEEEecCCc
Confidence 44444455543333 3467778889999998 99999987643 68999999999998875 67899999999999
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCCC------ceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEEec
Q 019438 112 SFTAKANFAEEANASAILIINNKTE------LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYS 182 (341)
Q Consensus 112 sF~~Ka~nAq~aGA~avLI~n~~~~------l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l~s 182 (341)
+|..|.+++|++||.++||.++... .++|... ++.++.+||++++-..+|-.++..|++-..+...+.-
T Consensus 99 SFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D--~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 99 SFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPD--ESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred eeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCc--ccccccCCceEEEeccceEEEehhHHHhCCccEEEec
Confidence 9999999999999999999887532 3577653 3345679999999999998888888775555544443
No 19
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.45 E-value=1.1e-12 Score=111.34 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=74.7
Q ss_pred ceeEEEEecCCCCCC-CCC-CCCCCCcEEEEecCCC--CHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCC-CCCCCcc
Q 019438 78 ASQNRLVLADPPDCC-SKP-KNKLTGEAILVHRGGC--SFTAKANFAEEANASAILIINNKTELFKMVCESN-ETDVDIR 152 (341)
Q Consensus 78 ~~~~~Lv~~~p~~aC-~~~-~~~l~g~IaLV~RG~C--sF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~-~~~~~i~ 152 (341)
...++++... .+- ... ..+++|||||++||.| +|.+|+++|+++||+|+|++|+.++.+....... .......
T Consensus 22 ~~~~~lV~~g--~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~ 99 (127)
T cd04819 22 EAKGEPVDAG--YGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSP 99 (127)
T ss_pred CeeEEEEEeC--CCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCC
Confidence 3567888764 221 011 2369999999999999 9999999999999999999998765332111111 1123468
Q ss_pred ceEEEechhhHHHHHHHHHCCCEEEEE
Q 019438 153 IPAIMLPQDAGANLEKLIKNNSVVSVQ 179 (341)
Q Consensus 153 IPvv~Is~~~G~~L~~~l~~G~~V~V~ 179 (341)
||++.|++++|+.|+++++.|..+.++
T Consensus 100 IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 100 IPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred CCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 999999999999999999998877654
No 20
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.44 E-value=1e-12 Score=113.56 Aligned_cols=93 Identities=22% Similarity=0.345 Sum_probs=71.3
Q ss_pred ceeEEEEecCCCCCCCCC--C-CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCccce
Q 019438 78 ASQNRLVLADPPDCCSKP--K-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIP 154 (341)
Q Consensus 78 ~~~~~Lv~~~p~~aC~~~--~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IP 154 (341)
...++|+.... |.+. . .+++|||+|++||+|+|.+|+++||++||+|+||+|+.++...+... ....||
T Consensus 25 ~~~~~lv~~g~---g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~-----~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL---GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLG-----EAVFIP 96 (143)
T ss_pred CcEEEEEEccC---CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCC-----CCCeEe
Confidence 45678887632 2222 2 46999999999999999999999999999999999997654443221 134799
Q ss_pred EEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 155 AIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 155 vv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
+++|++++|+.|++++++ .+++.+
T Consensus 97 ~v~Is~~dG~~L~~~l~~--~~~i~~ 120 (143)
T cd02133 97 VVFISKEDGEALKAALES--SKKLTF 120 (143)
T ss_pred EEEecHHHHHHHHHHHhC--CCeEEE
Confidence 999999999999999976 444443
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.33 E-value=3.6e-12 Score=109.33 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=78.4
Q ss_pred ccccCCceeEEEEecCCCCCCCCC-CCCCCCcEEEEecCCC------CHHHH-------HHHHHHcCCcEEEEEeCCCCc
Q 019438 72 EAKEKDASQNRLVLADPPDCCSKP-KNKLTGEAILVHRGGC------SFTAK-------ANFAEEANASAILIINNKTEL 137 (341)
Q Consensus 72 p~~~~~~~~~~Lv~~~p~~aC~~~-~~~l~g~IaLV~RG~C------sF~~K-------a~nAq~aGA~avLI~n~~~~l 137 (341)
|.+...+++++++.......=... ..+++|||||+.||.| +|.+| .++|+++||.|+|++|+.+..
T Consensus 10 ~~t~~~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~ 89 (134)
T cd04815 10 VATPPEGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDS 89 (134)
T ss_pred CCCCCCCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCccc
Confidence 344444677888876522210111 2479999999999999 99999 799999999999999975432
Q ss_pred eeec--cCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEE
Q 019438 138 FKMV--CESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQL 180 (341)
Q Consensus 138 ~~m~--~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l 180 (341)
..+. +..+.......||++.|++++|+.|.+++++|..|+++|
T Consensus 90 ~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 90 HRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred CCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 1111 111111224579999999999999999999999898864
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.24 E-value=4.5e-11 Score=100.19 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=68.6
Q ss_pred CCCCCCCCC---CCCCCcEEEEecCCC-CHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhH
Q 019438 88 PPDCCSKPK---NKLTGEAILVHRGGC-SFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAG 163 (341)
Q Consensus 88 p~~aC~~~~---~~l~g~IaLV~RG~C-sF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G 163 (341)
....|++.. .+++|||||++||.| +|.+|+++||++||.|+|++|+.++...+.. ....||++.|++++|
T Consensus 36 ~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~------~~~~iP~v~I~~~~g 109 (126)
T cd02120 36 DASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVA------DAHVLPAVHVDYEDG 109 (126)
T ss_pred ccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceecc------cccccceEEECHHHH
Confidence 447898764 469999999999999 9999999999999999999998765433321 135799999999999
Q ss_pred HHHHHHHHCCCEE
Q 019438 164 ANLEKLIKNNSVV 176 (341)
Q Consensus 164 ~~L~~~l~~G~~V 176 (341)
+.|+++++++..-
T Consensus 110 ~~l~~y~~~~~~~ 122 (126)
T cd02120 110 TAILSYINSTSNP 122 (126)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999876543
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.89 E-value=6.7e-09 Score=93.53 Aligned_cols=91 Identities=24% Similarity=0.290 Sum_probs=65.8
Q ss_pred ceeEEEEecCCCCCCCCCC--------CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcee----------
Q 019438 78 ASQNRLVLADPPDCCSKPK--------NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFK---------- 139 (341)
Q Consensus 78 ~~~~~Lv~~~p~~aC~~~~--------~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~---------- 139 (341)
...++++.++ .+ ...+ .+++|||||++||+|+|.+|+++||++||+|+||||+..+...
T Consensus 28 ~v~g~lVyvn--~G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~ 104 (183)
T cd02128 28 TVTGKLVYAN--YG-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGH 104 (183)
T ss_pred ceEEEEEEcC--CC-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecc
Confidence 4577888874 23 2222 3789999999999999999999999999999999998422100
Q ss_pred --eccC----------CC------CCCCCccceEEEechhhHHHHHHHHH
Q 019438 140 --MVCE----------SN------ETDVDIRIPAIMLPQDAGANLEKLIK 171 (341)
Q Consensus 140 --m~~~----------~~------~~~~~i~IPvv~Is~~~G~~L~~~l~ 171 (341)
+... +. +...-.+||+.-|++++++.|++.|.
T Consensus 105 ~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 105 VHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred eeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC
Confidence 0000 00 00012479999999999999999884
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.37 E-value=1.7e-06 Score=80.26 Aligned_cols=53 Identities=23% Similarity=0.269 Sum_probs=44.1
Q ss_pred eeEEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 019438 79 SQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (341)
Q Consensus 79 ~~~~Lv~~~p~~aC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~ 134 (341)
..++|+.+. .|... ..+++|||||+++|.|.+.+|+++||++||+|+|||++.
T Consensus 45 v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 45 VTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred ceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 467888764 34332 247999999999999999999999999999999999974
No 25
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.37 E-value=1.3e-06 Score=75.93 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=47.3
Q ss_pred eeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCC------------------CHHHHHHHHHHcCCcEEEEEeCC
Q 019438 79 SQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGC------------------SFTAKANFAEEANASAILIINNK 134 (341)
Q Consensus 79 ~~~~Lv~~~---p~~aC~~~~---~~l~g~IaLV~RG~C------------------sF~~Ka~nAq~aGA~avLI~n~~ 134 (341)
..+++|.+. ....|...+ .+++||||||.||+| +|..|+++|+++||+|+|++|+.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 456787663 346776554 489999999999999 69999999999999999999985
Q ss_pred C
Q 019438 135 T 135 (341)
Q Consensus 135 ~ 135 (341)
+
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 4
No 26
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.33 E-value=1.8e-06 Score=75.77 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=60.5
Q ss_pred eeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCC------------------CCHHHHHHHHHHcCCcEEEEEeCC
Q 019438 79 SQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGG------------------CSFTAKANFAEEANASAILIINNK 134 (341)
Q Consensus 79 ~~~~Lv~~~---p~~aC~~~~---~~l~g~IaLV~RG~------------------CsF~~Ka~nAq~aGA~avLI~n~~ 134 (341)
..++++.+. ..+.|...+ .+++||||||.||+ |+|..|+++|+++||+|+|+||+.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 467888764 456786554 48999999999985 999999999999999999999986
Q ss_pred CCceeeccCCCCCCCCccceEEEechhhHHHHHHH
Q 019438 135 TELFKMVCESNETDVDIRIPAIMLPQDAGANLEKL 169 (341)
Q Consensus 135 ~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~ 169 (341)
++... .....+..... .++.++.+.-+.+..+
T Consensus 100 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 100 NSHSG--DADRLPRFGGT-APQRVDIAAADPWFTA 131 (151)
T ss_pred cccCc--ccccccccCcc-ceEEechHHHHHHhhh
Confidence 43210 00000000111 2677777776666664
No 27
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.26 E-value=3.1e-06 Score=73.04 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=47.7
Q ss_pred ceeEEEEecC---CCCCCCCCC---CCCCCcEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEeCCC
Q 019438 78 ASQNRLVLAD---PPDCCSKPK---NKLTGEAILVHRGGCS------------FTAKANFAEEANASAILIINNKT 135 (341)
Q Consensus 78 ~~~~~Lv~~~---p~~aC~~~~---~~l~g~IaLV~RG~Cs------------F~~Ka~nAq~aGA~avLI~n~~~ 135 (341)
...++++.+. ..+.|...+ .+++|||||++||.|+ +.+|.++|+++||+|+|+|++..
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3567888763 456776544 4899999999999995 88999999999999999999853
No 28
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.88 E-value=1.7e-05 Score=69.40 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=36.1
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 019438 97 NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (341)
Q Consensus 97 ~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~ 134 (341)
.+++|||+|++.|......|+++||++||.|+|||.|.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 47999999999999999999999999999999999985
No 29
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.
Probab=97.59 E-value=1.4e-05 Score=77.32 Aligned_cols=59 Identities=34% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCcEEeecceehhhHHHHHHHHHHHHhhhccee------hhhhhhhhhhcchhhhHHhHHHHHH
Q 019438 240 SNGFVDINMASAVSFVVIASCFLVMLYKLMSFWF------IEVLVVLFCIGGVEGLQTCVVALLS 298 (341)
Q Consensus 240 ~~e~v~~t~~~a~~FVv~~s~~LllLyff~~~~~------v~vii~iFci~~~~gL~~Cl~~l~~ 298 (341)
|++..++|+++|++|.+++|++|+.|||++..|- ++++++.||++|+.++..++.+.+.
T Consensus 2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~ 66 (298)
T PF04258_consen 2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLT 66 (298)
T ss_dssp -----------------------------------------------------------------
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999999994333 4899999999999997666565444
No 30
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=96.79 E-value=0.0012 Score=62.60 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=47.9
Q ss_pred EeecceehhhHHHHHHHHHHHHhhhcceehhhhhhhhhhcchhhhHHhHHHHHHh
Q 019438 245 DINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSW 299 (341)
Q Consensus 245 ~~t~~~a~~FVv~~s~~LllLyff~~~~~v~vii~iFci~~~~gL~~Cl~~l~~r 299 (341)
..|+..++.|++++|++|++||+++ ++.++.++..||++++.+++.++.+...+
T Consensus 4 ~~n~~~~i~fii~~s~~Ll~Ly~~~-~~~~i~~~~~f~~~~~~~~~~~~~~~~~~ 57 (249)
T smart00730 4 LLNSLVAIVFPIVATFVLVLLYKFF-KYLVIVLVIYFSSLGVLFLYSLLYPLEVF 57 (249)
T ss_pred cccHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999 44489999999999999999999876553
No 31
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.85 E-value=0.011 Score=52.15 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCCcEEEEecCCCCH-------------------HHHHHHHHHcCCcEEEEEeCC
Q 019438 97 NKLTGEAILVHRGGCSF-------------------TAKANFAEEANASAILIINNK 134 (341)
Q Consensus 97 ~~l~g~IaLV~RG~CsF-------------------~~Ka~nAq~aGA~avLI~n~~ 134 (341)
.+++||||++.+|+=.| ..|.+.|+++||.|+|++++.
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 58999999999886543 359999999999999999764
No 32
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.012 Score=57.66 Aligned_cols=92 Identities=32% Similarity=0.385 Sum_probs=65.6
Q ss_pred ccceeehhHHHHHHHhhheeeeccchhhhhHHHHHhhhcCCCCCcccccCCCCCCcEEeecceeh-hhHHHHHHHHHHHH
Q 019438 188 VDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAV-SFVVIASCFLVMLY 266 (341)
Q Consensus 188 ~D~s~v~i~lmAv~Tv~~~~~WS~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~e~v~~t~~~a~-~FVv~~s~~LllLy 266 (341)
.+.+-+-+.+||+.++..|++||....+++ ++++ +.++ .++-+.+. +|=++++|.|++||
T Consensus 23 ~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~---~d~~--~~~e--------------s~t~~~a~~~fPi~~s~tLl~ly 83 (362)
T KOG2443|consen 23 LASAYVSLILIALLLIVIGSFRSLNYIKEN---EDKK--DKSE--------------SITKRDAGKMFPIIGSCTLLLLY 83 (362)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhhhhhhh---hccc--chhh--------------hhhhhhhcccCCcccchHHHHHH
Confidence 455666788999999999999998877663 1111 0000 01111222 47788999999999
Q ss_pred hhhc---ceehhhhhhhhhhcchhhhHHhHHHHHH
Q 019438 267 KLMS---FWFIEVLVVLFCIGGVEGLQTCVVALLS 298 (341)
Q Consensus 267 ff~~---~~~v~vii~iFci~~~~gL~~Cl~~l~~ 298 (341)
++.. .-+..+++..|++.|..++.+-+.|+++
T Consensus 84 l~fk~ls~~~~~ll~~~ff~~g~~al~~~~~p~~~ 118 (362)
T KOG2443|consen 84 LLFKPLSKELINLLTMYFFFLGVIALLSLLDPFIN 118 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 8873 2234578889999999999999999998
No 33
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=90.08 E-value=1.2 Score=44.56 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCHHHHH--HHHHHcCCcEEEEEeCCCCceeeccCCC--CCCCCccceEEEechhhHHHHHHHHHCC
Q 019438 98 KLTGEAILVHRGGCSFTAKA--NFAEEANASAILIINNKTELFKMVCESN--ETDVDIRIPAIMLPQDAGANLEKLIKNN 173 (341)
Q Consensus 98 ~l~g~IaLV~RG~CsF~~Ka--~nAq~aGA~avLI~n~~~~l~~m~~~~~--~~~~~i~IPvv~Is~~~G~~L~~~l~~G 173 (341)
+..|++++-+|-+--...|. ..|.++||.|+|+-.+.+.-+...+..+ .......||++.++..++..... .
T Consensus 87 D~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~~----~ 162 (486)
T COG4882 87 DAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEE----A 162 (486)
T ss_pred CCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccccCCCCCCCcceEEeccCcchhhcc----c
Confidence 67899998888554444454 3688999999999887654321111111 11234589999999999887543 3
Q ss_pred CEEEEEEecCCCCCccceeehhHHHHHHHhhheeeeccchh
Q 019438 174 SVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTA 214 (341)
Q Consensus 174 ~~V~V~l~sp~~p~~D~s~v~i~lmAv~Tv~~~~~WS~~~~ 214 (341)
..+++....-.+...||+.+-.---=-+++..+..|-||-.
T Consensus 163 ~rvrl~vD~~~~~ty~y~~Ia~~~~en~vv~i~AH~DHW~~ 203 (486)
T COG4882 163 GRVRLWVDACVERTYDYNVIAVDGGENGVVLIGAHLDHWYT 203 (486)
T ss_pred eeEEEEEecccceeEEEEEEEecCCCCCceEEeechhhhhh
Confidence 46777776555555677654332222356778888877753
No 34
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=73.14 E-value=4.1 Score=44.18 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=35.2
Q ss_pred CCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 019438 97 NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNK 134 (341)
Q Consensus 97 ~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~ 134 (341)
.+++|+|+|++-|.-.+.+|++||+++||.|+++|.+.
T Consensus 181 i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 181 INLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred ccccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 46889999999999999999999999999999999864
No 35
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=9.7 Score=37.28 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=29.2
Q ss_pred EEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q 019438 104 ILVHRGGCSFTAKANFAEEANASAILIINNKTE 136 (341)
Q Consensus 104 aLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~ 136 (341)
..++||||+..+|.+-+|+-|-+|+|..++...
T Consensus 150 ~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~ 182 (374)
T COG5540 150 RCNRRGNETEEDPTRERRRTRFKGVIRGSERNG 182 (374)
T ss_pred HHHHccCccccCccccchhccccceeeccccCC
Confidence 356899999999999999999999999987643
No 36
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=40.72 E-value=24 Score=31.01 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=23.5
Q ss_pred EeecceehhhHHHHHHHHHHHHhhhcceehhhhhhhhhhcchhhhHHhHHHHHHhh
Q 019438 245 DINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWY 300 (341)
Q Consensus 245 ~~t~~~a~~FVv~~s~~LllLyff~~~~~v~vii~iFci~~~~gL~~Cl~~l~~r~ 300 (341)
+.+...+++.+++.-..||+||..+ -.|+.|+++|.
T Consensus 50 nt~tikVvVIivl~Vi~lLvlYM~f--------------------L~~ldPllrk~ 85 (149)
T PF05434_consen 50 NTTTIKVVVIIVLWVIGLLVLYMLF--------------------LMCLDPLLRKR 85 (149)
T ss_pred eeeEEEEEEEEeHHHHHHHHHHHHH--------------------HHHHhHHHhcc
Confidence 3455566666666777777788443 24799999654
No 37
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=39.08 E-value=42 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=14.0
Q ss_pred eec--ceehhhHHHHHHHHH
Q 019438 246 INM--ASAVSFVVIASCFLV 263 (341)
Q Consensus 246 ~t~--~~a~~FVv~~s~~Ll 263 (341)
+.| +.+.+|+++|.+.++
T Consensus 108 ~GPliMGIGiFifIcAnavl 127 (141)
T PF10177_consen 108 FGPLIMGIGIFIFICANAVL 127 (141)
T ss_pred ecceEEecchhHHhHhHHHh
Confidence 566 688899999877665
No 38
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=38.48 E-value=23 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=16.0
Q ss_pred ceehhhHHHHHHHHHHHHhhh
Q 019438 249 ASAVSFVVIASCFLVMLYKLM 269 (341)
Q Consensus 249 ~~a~~FVv~~s~~LllLyff~ 269 (341)
..+++|+..+..+|+++|||.
T Consensus 44 l~a~~iI~~~gv~~~~ly~ff 64 (84)
T PRK13718 44 LAAVFVILYSGVLLFILYFFF 64 (84)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 456777777788888888887
No 39
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=36.82 E-value=36 Score=24.91 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCccCCCCC
Q 019438 4 KRVINIFIFILVSSPCLASAGDIVHQDNNAP 34 (341)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~ 34 (341)
+|--.||+|+|=+....|.+.|.++.-...+
T Consensus 23 krAQRifiFiLElLL~FC~GedsvdGK~k~~ 53 (62)
T PF01736_consen 23 KRAQRIFIFILELLLEFCRGEDSVDGKNKKT 53 (62)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccCc
Confidence 5677889998877767888889888765544
No 40
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=36.12 E-value=29 Score=26.13 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=17.7
Q ss_pred ceehhhHHHHHHHHHHHHhhhc
Q 019438 249 ASAVSFVVIASCFLVMLYKLMS 270 (341)
Q Consensus 249 ~~a~~FVv~~s~~LllLyff~~ 270 (341)
..++.|+....+|+.++|+|.|
T Consensus 36 l~a~~~I~~~g~~~~~~y~ffs 57 (66)
T PF11100_consen 36 LEAVFFILASGFMLFILYCFFS 57 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888889998884
No 41
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=32.14 E-value=1.6e+02 Score=22.53 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=28.4
Q ss_pred CCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEEec
Q 019438 143 ESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYS 182 (341)
Q Consensus 143 ~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l~s 182 (341)
.++++.+++.+| ...-|+.|++...+|+++.|+..+
T Consensus 21 e~G~~k~DlklP----~~elg~~I~~~f~~gk~~~vtV~s 56 (69)
T cd04468 21 DDGETREDLKLP----EGELGKEIREKFDEGKDVLVTVLS 56 (69)
T ss_pred CCCCcccCCcCC----cHHHHHHHHHHHhCCCcEEEEEEc
Confidence 334556788889 367899999999999999888764
No 42
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.45 E-value=39 Score=27.36 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=8.3
Q ss_pred CchhhHHHHHHH
Q 019438 1 MDTKRVINIFIF 12 (341)
Q Consensus 1 ~~~~~~~~~~~~ 12 (341)
|+||.+|-+-|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 889986655544
No 43
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=29.88 E-value=2e+02 Score=24.72 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCCCCcEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCC
Q 019438 97 NKLTGEAILVH--RGGCSFTAKANFAEEAN-ASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNN 173 (341)
Q Consensus 97 ~~l~g~IaLV~--RG~CsF~~Ka~nAq~aG-A~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G 173 (341)
.+++|||.+.. ||.|.=.-=...+.+.| |-+.||.-+.+..+...+- --.||.+-... ...+.++.|
T Consensus 47 ~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~~e~EpIla~Gai------~a~iPlv~~~~----e~~~~l~~g 116 (131)
T COG1786 47 ESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVNEEAEPILAVGAI------LAGIPLVDGVD----EFFEELKTG 116 (131)
T ss_pred ccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhhcCCcceeeehhh------hcCCceEeccH----HHHHHhccC
Confidence 47999999986 68898888888888888 5555555543444333221 12688766554 345566778
Q ss_pred CEEEEE
Q 019438 174 SVVSVQ 179 (341)
Q Consensus 174 ~~V~V~ 179 (341)
..|++.
T Consensus 117 ~~v~v~ 122 (131)
T COG1786 117 DRVRVN 122 (131)
T ss_pred CEEEEc
Confidence 777664
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.19 E-value=44 Score=24.48 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=21.3
Q ss_pred HCCCEEEEEEecCCCCCccceeehhHHHHHHHh--hheeeeccchhhhh
Q 019438 171 KNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTI--LCASYWSAWTARET 217 (341)
Q Consensus 171 ~~G~~V~V~l~sp~~p~~D~s~v~i~lmAv~Tv--~~~~~WS~~~~r~~ 217 (341)
++...|++++.--..+ .-...+++..+++|.+ .+.+.+..++.+.+
T Consensus 2 qN~~~V~v~~~~~~~~-~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~ 49 (68)
T PF06305_consen 2 QNTQPVTVNFLFGQFP-LPLGLLILIAFLLGALLGWLLSLPSRLRLRRR 49 (68)
T ss_pred CCCceEEEEEEeeecc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788887754333 3333333333333333 33334444444443
No 45
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.03 E-value=1.5e+02 Score=22.91 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcEEEEecC-----CCCHHHHHHHHH-HcCCcEEEEEeCCCC------ceeeccCCCCCCCCccceEEEechh---hHH
Q 019438 100 TGEAILVHRG-----GCSFTAKANFAE-EANASAILIINNKTE------LFKMVCESNETDVDIRIPAIMLPQD---AGA 164 (341)
Q Consensus 100 ~g~IaLV~RG-----~CsF~~Ka~nAq-~aGA~avLI~n~~~~------l~~m~~~~~~~~~~i~IPvv~Is~~---~G~ 164 (341)
+++|++...| .|.|-.|++..- +.|.. .-.+|-.++ +.... ..-++|.++|... ..+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~~~~~~~l~~~~-------g~~tvP~vfi~g~~iGG~~ 78 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILEDEEVRQGLKEYS-------NWPTFPQLYVNGELVGGCD 78 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCCHHHHHHHHHHh-------CCCCCCEEEECCEEEeCHH
Confidence 4678888876 899999998655 55654 333442211 11111 1237899998876 445
Q ss_pred HHHHHHHCC
Q 019438 165 NLEKLIKNN 173 (341)
Q Consensus 165 ~L~~~l~~G 173 (341)
.++++.++|
T Consensus 79 ~l~~l~~~g 87 (90)
T cd03028 79 IVKEMHESG 87 (90)
T ss_pred HHHHHHHcC
Confidence 666665555
No 46
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []. Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
Probab=24.72 E-value=1.8e+02 Score=22.07 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=28.5
Q ss_pred ceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEEe
Q 019438 137 LFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLY 181 (341)
Q Consensus 137 l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l~ 181 (341)
+.-|. .++++..++.+| ...-|+.|++.+..|+++.|+..
T Consensus 18 lsLMd-e~get~eDl~lP----~~el~~ei~~~~~~g~~~~Vtv~ 57 (69)
T PF01287_consen 18 LSLMD-EDGETREDLKLP----DGELGEEIKAKFEEGKEVLVTVL 57 (69)
T ss_dssp EEEEE-TTS-EEEEEECC----SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEc-CCCCeeccEEec----ccchhHHHHhhccCCCeEEEEEE
Confidence 33454 445556678888 66788999999999999766654
No 47
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=24.19 E-value=68 Score=20.81 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=15.8
Q ss_pred ceehhhHHHHHHHHHHHHh
Q 019438 249 ASAVSFVVIASCFLVMLYK 267 (341)
Q Consensus 249 ~~a~~FVv~~s~~LllLyf 267 (341)
....+|+.+.+.||+.+|-
T Consensus 9 iAtaLfi~iPt~FLiilyv 27 (31)
T PF05151_consen 9 IATALFILIPTAFLIILYV 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhheEe
Confidence 4567899999999999883
No 48
>PRK10824 glutaredoxin-4; Provisional
Probab=24.14 E-value=1.2e+02 Score=25.28 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=41.3
Q ss_pred CCcEEEEecC-----CCCHHHHHHHHH-HcCCcEE-EEEeCCCCce-eeccCCCCCCCCccceEEEechh---hHHHHHH
Q 019438 100 TGEAILVHRG-----GCSFTAKANFAE-EANASAI-LIINNKTELF-KMVCESNETDVDIRIPAIMLPQD---AGANLEK 168 (341)
Q Consensus 100 ~g~IaLV~RG-----~CsF~~Ka~nAq-~aGA~av-LI~n~~~~l~-~m~~~~~~~~~~i~IPvv~Is~~---~G~~L~~ 168 (341)
+++|++...| .|.|-.|++..- +.|...- +-+++.++.. .|.-. ....++|-++|... ..+.+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~----sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKY----ANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHH----hCCCCCCeEEECCEEEcChHHHHH
Confidence 5789999998 899999998754 5665532 2222221110 01000 01248899999877 2345566
Q ss_pred HHHCCC
Q 019438 169 LIKNNS 174 (341)
Q Consensus 169 ~l~~G~ 174 (341)
+.++|.
T Consensus 90 l~~~G~ 95 (115)
T PRK10824 90 MYQRGE 95 (115)
T ss_pred HHHCCC
Confidence 555553
No 49
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=22.74 E-value=1.5e+02 Score=22.86 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=23.6
Q ss_pred CcEE---EEecCCCCHHHHHHHHHHcCCcEEEEEeC
Q 019438 101 GEAI---LVHRGGCSFTAKANFAEEANASAILIINN 133 (341)
Q Consensus 101 g~Ia---LV~RG~CsF~~Ka~nAq~aGA~avLI~n~ 133 (341)
|+++ +|.+ -.+.+-....+++||.++++++=
T Consensus 39 ~w~AV~~vV~~--~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 39 DWVAVHAVVPE--KQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp TEEEEEEEEEC--CCHHHHHHHHHCTT-EEEEEEE-
T ss_pred CEEEEEEEecH--HHHHHHHHHHHHcCCCEEEEEec
Confidence 5554 4666 47999999999999999999863
No 50
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=22.13 E-value=1e+02 Score=24.08 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=17.6
Q ss_pred CcEEeecceehhhHHHHHHHHHHH
Q 019438 242 GFVDINMASAVSFVVIASCFLVML 265 (341)
Q Consensus 242 e~v~~t~~~a~~FVv~~s~~LllL 265 (341)
-.++..-++++.||++.|.||.+|
T Consensus 21 ~~~~~eqkt~faFV~~L~~fL~~l 44 (81)
T PF11057_consen 21 SSLDLEQKTAFAFVGLLCLFLGLL 44 (81)
T ss_pred cccccccceeehHHHHHHHHHHHH
Confidence 445556688999999888777654
No 51
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=21.39 E-value=91 Score=21.12 Aligned_cols=12 Identities=8% Similarity=0.650 Sum_probs=8.9
Q ss_pred ehhhhhhhhhhc
Q 019438 273 FIEVLVVLFCIG 284 (341)
Q Consensus 273 ~v~vii~iFci~ 284 (341)
+|.+|.+|||+.
T Consensus 20 lv~imliif~f~ 31 (43)
T PF11395_consen 20 LVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHH
Confidence 457788899873
No 52
>PF05324 Sperm_Ag_HE2: Sperm antigen HE2; InterPro: IPR007988 This family consists of several variants of the human and chimpanzee (Pan troglodytes) sperm antigen proteins (HE2 and EP2 respectively). The EP2 gene codes for a family of androgen-dependent, epididymis-specific secretory proteins.The EP2 gene uses alternative promoters and differential splicing to produce a family of variant messages. The translated putative protein variants differ significantly from each other. Some of these putative proteins have similarity to beta-defensins, a family of antimicrobial peptides [].; GO: 0005576 extracellular region
Probab=20.79 E-value=1.2e+02 Score=23.34 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhh---cccccCCCCCccCCCCCCCCCC
Q 019438 5 RVINIFIFILVSS---PCLASAGDIVHQDNNAPKRPGC 39 (341)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~~~~d~~~~d~~~~~~p~c 39 (341)
|++--|.++|+.+ ++.+.|.-+.|.+..+|..|..
T Consensus 3 ~llP~~~sLLLvaLLfPG~s~a~~vnh~~tegpre~~e 40 (73)
T PF05324_consen 3 RLLPSFVSLLLVALLFPGSSRARHVNHQGTEGPREPRE 40 (73)
T ss_pred chhHHHHHHHHHHHHccCcccccccccccccCCccccc
Confidence 6666666666665 5777888888888888887755
No 53
>PHA02621 agnoprotein; Provisional
Probab=20.66 E-value=1e+02 Score=22.93 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCccCCC
Q 019438 4 KRVINIFIFILVSSPCLASAGDIVHQDNN 32 (341)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~d~~~~d~~ 32 (341)
||--.||+|+|=+....|.+.|.++.-.+
T Consensus 23 kraqri~if~le~ll~fc~gedsvdgk~k 51 (68)
T PHA02621 23 KRAQRIFIFILELLLDFCRGEDSVDGKKK 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 67778888888777678888888765443
No 54
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=20.62 E-value=80 Score=33.09 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhc----------------ceehhhhhhhhhhcch
Q 019438 258 ASCFLVMLYKLMS----------------FWFIEVLVVLFCIGGV 286 (341)
Q Consensus 258 ~s~~LllLyff~~----------------~~~v~vii~iFci~~~ 286 (341)
+|.+|++.||+.- .|.+|++-.+|||-|+
T Consensus 12 ~~~~li~a~~l~k~~lf~~lm~~~~~~~~k~~~~~iFSlf~im~t 56 (557)
T COG3275 12 MCVILIIAFFLSKTPLFIPLMQVTARLPHKLALYIIFSLFCIMGT 56 (557)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhcCCcceeehHHHHHHHHHhhc
Confidence 7889999998763 6889999999998775
No 55
>PLN02601 beta-carotene hydroxylase
Probab=20.48 E-value=1.6e+02 Score=28.68 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=54.4
Q ss_pred HHHHHHhhheeeeccchhhhhHHHHHhhhcCCCCCcccccCCCCCCcEEeecceehhhHHHHHHHHHHHHhhhcceehhh
Q 019438 197 LMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEV 276 (341)
Q Consensus 197 lmAv~Tv~~~~~WS~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~e~v~~t~~~a~~FVv~~s~~LllLyff~~~~~v~v 276 (341)
.+.++|.+..=+|+.+.++.- -+-.+=.=+. +--.++++.+|.|=..+++|-+.+-.++.+.++.. .++-+.
T Consensus 138 al~lgtfvgMEf~Aw~aHKYv---MHG~LW~lH~----sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~-g~~p~~ 209 (303)
T PLN02601 138 ALSVGAAVGMEFWARWAHRAL---WHDSLWNMHE----SHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNK-GLVPGL 209 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcchhhhh----hcCCCCCCCcccccchhhhhHHHHHHHHHHhhccc-cccHHH
Confidence 366777777778887766542 1110000000 11233456688899999999988877666555433 322211
Q ss_pred hhhhhhhcchhhhHHhHHHHHH------hhccCCcccc
Q 019438 277 LVVLFCIGGVEGLQTCVVALLS------WYVYSSFCIC 308 (341)
Q Consensus 277 ii~iFci~~~~gL~~Cl~~l~~------r~~~~~f~~~ 308 (341)
.|.+|-...+|.-..-+++ |+|+++-.+.
T Consensus 210 ---~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~ 244 (303)
T PLN02601 210 ---CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANV 244 (303)
T ss_pred ---HHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCC
Confidence 1344444455665555554 6665554433
No 56
>PLN02280 IAA-amino acid hydrolase
Probab=20.35 E-value=97 Score=32.06 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.1
Q ss_pred CchhhHHHHHHHHHHhh
Q 019438 1 MDTKRVINIFIFILVSS 17 (341)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (341)
|+++|-++.+.+.|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (478)
T PLN02280 1 MNNLRNLNLLSLSLTIS 17 (478)
T ss_pred CchhhhhHHHHHHHHHh
Confidence 78899999888777776
Done!