Query 019439
Match_columns 341
No_of_seqs 200 out of 1812
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 2.3E-38 5.1E-43 279.2 30.3 298 15-312 7-313 (334)
2 PLN00411 nodulin MtN21 family 100.0 7.9E-32 1.7E-36 243.0 31.5 287 20-309 12-333 (358)
3 PRK11272 putative DMT superfam 100.0 2.1E-29 4.5E-34 223.8 30.4 275 23-307 10-288 (292)
4 PRK11689 aromatic amino acid e 100.0 3.4E-29 7.3E-34 222.7 26.2 276 22-307 5-290 (295)
5 PRK11453 O-acetylserine/cystei 100.0 2.4E-28 5.2E-33 217.7 29.5 274 24-307 7-290 (299)
6 PRK10532 threonine and homoser 100.0 5.3E-28 1.2E-32 214.8 29.1 276 18-308 9-285 (293)
7 TIGR00817 tpt Tpt phosphate/ph 100.0 1.9E-28 4.2E-33 218.9 25.3 266 37-310 18-299 (302)
8 TIGR00950 2A78 Carboxylate/Ami 100.0 9.1E-28 2E-32 210.3 28.0 254 36-300 4-260 (260)
9 PRK15430 putative chlorampheni 100.0 4.6E-27 9.9E-32 209.1 29.9 271 18-306 5-287 (296)
10 KOG2766 Predicted membrane pro 100.0 1.2E-30 2.5E-35 213.1 4.8 290 16-309 13-304 (336)
11 PTZ00343 triose or hexose phos 100.0 3.9E-26 8.4E-31 207.0 28.1 262 34-305 62-349 (350)
12 TIGR03340 phn_DUF6 phosphonate 99.9 7.8E-25 1.7E-29 193.5 23.9 267 24-301 4-280 (281)
13 TIGR00688 rarD rarD protein. T 99.9 4.2E-22 9E-27 173.9 29.0 242 21-279 2-255 (256)
14 COG0697 RhaT Permeases of the 99.9 3.9E-22 8.5E-27 177.3 28.8 277 20-305 6-288 (292)
15 KOG4510 Permease of the drug/m 99.9 5E-24 1.1E-28 175.5 2.5 256 48-306 61-327 (346)
16 COG5006 rhtA Threonine/homoser 99.9 5.5E-20 1.2E-24 150.9 25.7 248 47-307 36-285 (292)
17 PF08449 UAA: UAA transporter 99.9 2.1E-20 4.5E-25 166.9 24.7 274 36-309 15-302 (303)
18 TIGR00776 RhaT RhaT L-rhamnose 99.9 2E-19 4.3E-24 159.1 23.3 272 22-304 2-288 (290)
19 COG2962 RarD Predicted permeas 99.8 3E-18 6.6E-23 144.5 26.1 273 18-307 4-286 (293)
20 KOG2765 Predicted membrane pro 99.8 1.3E-18 2.8E-23 150.6 15.9 228 82-310 160-396 (416)
21 KOG1441 Glucose-6-phosphate/ph 99.8 3.2E-19 6.9E-24 155.9 7.3 258 47-311 44-314 (316)
22 KOG2234 Predicted UDP-galactos 99.8 2.8E-15 6E-20 130.3 29.8 275 31-309 25-327 (345)
23 PF04142 Nuc_sug_transp: Nucle 99.7 1.8E-15 4E-20 129.6 22.8 215 77-295 13-244 (244)
24 KOG3912 Predicted integral mem 99.7 1.7E-15 3.6E-20 126.3 15.8 257 47-304 35-334 (372)
25 KOG1444 Nucleotide-sugar trans 99.6 8.8E-13 1.9E-17 113.2 23.7 286 21-312 12-308 (314)
26 KOG1443 Predicted integral mem 99.6 1.6E-13 3.4E-18 116.2 18.6 252 47-304 41-315 (349)
27 KOG1582 UDP-galactose transpor 99.6 1.8E-13 3.9E-18 113.8 17.3 256 51-310 75-338 (367)
28 KOG1581 UDP-galactose transpor 99.6 5.3E-13 1.2E-17 113.1 20.4 258 48-308 48-317 (327)
29 KOG1580 UDP-galactose transpor 99.5 2.3E-13 5E-18 110.9 14.5 230 77-307 81-316 (337)
30 PF06800 Sugar_transport: Suga 99.5 6.3E-12 1.4E-16 107.4 21.1 244 50-301 11-268 (269)
31 COG2510 Predicted membrane pro 99.5 6.7E-13 1.5E-17 97.9 10.2 128 23-152 5-138 (140)
32 COG2510 Predicted membrane pro 99.4 1.2E-11 2.7E-16 91.3 11.6 135 168-304 4-139 (140)
33 COG5070 VRG4 Nucleotide-sugar 99.4 1.5E-11 3.2E-16 99.6 12.6 272 37-310 22-302 (309)
34 PF00892 EamA: EamA-like trans 99.3 4.8E-12 1E-16 97.7 7.0 124 177-302 1-124 (126)
35 KOG4314 Predicted carbohydrate 99.3 1.8E-11 3.9E-16 97.3 8.7 218 85-308 57-280 (290)
36 PF13536 EmrE: Multidrug resis 99.3 8.4E-11 1.8E-15 89.0 12.0 100 56-156 2-109 (113)
37 PF00892 EamA: EamA-like trans 99.3 5.1E-11 1.1E-15 91.9 9.9 117 33-152 3-125 (126)
38 KOG1442 GDP-fucose transporter 99.2 2.9E-12 6.3E-17 106.8 2.9 256 48-308 58-331 (347)
39 PF03151 TPT: Triose-phosphate 99.2 8.3E-10 1.8E-14 88.4 12.8 137 168-304 1-153 (153)
40 KOG1583 UDP-N-acetylglucosamin 99.1 1.1E-10 2.5E-15 97.6 7.1 267 38-307 20-317 (330)
41 TIGR00950 2A78 Carboxylate/Ami 99.1 2.6E-09 5.7E-14 93.4 16.0 130 19-148 126-259 (260)
42 TIGR00803 nst UDP-galactose tr 99.0 5.6E-09 1.2E-13 89.1 13.6 192 107-302 4-222 (222)
43 PF05653 Mg_trans_NIPA: Magnes 99.0 2.7E-08 5.9E-13 88.0 17.9 212 94-307 63-295 (300)
44 PRK13499 rhamnose-proton sympo 99.0 7.3E-07 1.6E-11 79.6 24.3 226 77-305 69-342 (345)
45 TIGR03340 phn_DUF6 phosphonate 98.9 2.3E-08 5.1E-13 88.4 12.3 131 169-304 3-135 (281)
46 PRK15430 putative chlorampheni 98.9 2.9E-08 6.2E-13 88.5 12.6 137 164-303 5-144 (296)
47 TIGR00688 rarD rarD protein. T 98.9 3.4E-08 7.4E-13 86.2 12.5 134 167-303 2-141 (256)
48 PRK10532 threonine and homoser 98.9 2.6E-07 5.6E-12 82.3 18.0 133 20-155 147-283 (293)
49 PRK11272 putative DMT superfam 98.8 1.9E-07 4E-12 83.1 15.6 132 20-154 149-286 (292)
50 PLN00411 nodulin MtN21 family 98.8 2.6E-07 5.7E-12 84.0 15.8 136 20-156 188-331 (358)
51 KOG2922 Uncharacterized conser 98.8 1.4E-07 3E-12 81.4 12.7 220 87-310 69-312 (335)
52 PRK02971 4-amino-4-deoxy-L-ara 98.7 3.5E-07 7.6E-12 70.3 12.6 122 167-307 2-125 (129)
53 COG4975 GlcU Putative glucose 98.7 6.1E-10 1.3E-14 91.9 -3.6 246 48-303 25-284 (288)
54 PRK11453 O-acetylserine/cystei 98.7 1.4E-06 3.1E-11 77.8 17.4 136 20-155 142-289 (299)
55 PRK11689 aromatic amino acid e 98.7 8E-07 1.7E-11 79.2 15.5 130 20-154 155-288 (295)
56 TIGR00817 tpt Tpt phosphate/ph 98.6 1.1E-06 2.3E-11 78.7 14.5 136 20-155 144-295 (302)
57 TIGR00776 RhaT RhaT L-rhamnose 98.6 1.2E-06 2.6E-11 77.8 14.0 130 19-153 150-288 (290)
58 PRK15051 4-amino-4-deoxy-L-ara 98.6 5.2E-07 1.1E-11 67.6 9.4 67 87-153 42-109 (111)
59 PF03151 TPT: Triose-phosphate 98.6 4.7E-06 1E-10 66.6 15.7 129 22-150 1-150 (153)
60 COG0697 RhaT Permeases of the 98.4 1.9E-05 4.1E-10 69.8 16.7 133 19-154 152-288 (292)
61 PTZ00343 triose or hexose phos 98.4 2.4E-05 5.1E-10 71.4 17.2 135 19-153 192-348 (350)
62 PF13536 EmrE: Multidrug resis 98.3 3.4E-06 7.5E-11 63.7 8.5 67 241-308 44-110 (113)
63 PRK15051 4-amino-4-deoxy-L-ara 98.3 1.3E-05 2.9E-10 60.0 10.5 63 241-303 46-108 (111)
64 COG2962 RarD Predicted permeas 98.2 1.1E-05 2.5E-10 69.0 10.3 140 164-304 4-144 (293)
65 PRK02971 4-amino-4-deoxy-L-ara 98.2 1.2E-05 2.5E-10 61.8 9.2 72 84-155 50-124 (129)
66 COG5006 rhtA Threonine/homoser 97.9 0.00036 7.9E-09 58.5 12.9 131 21-153 148-282 (292)
67 PRK10452 multidrug efflux syst 97.9 7.1E-05 1.5E-09 56.5 8.0 68 88-155 37-105 (120)
68 PRK10452 multidrug efflux syst 97.9 0.00012 2.7E-09 55.2 9.1 63 244-306 42-105 (120)
69 COG2076 EmrE Membrane transpor 97.9 0.00034 7.3E-09 51.0 10.9 65 90-154 39-104 (106)
70 PF06027 DUF914: Eukaryotic pr 97.8 0.00059 1.3E-08 61.2 14.0 140 166-308 12-155 (334)
71 PRK10650 multidrug efflux syst 97.8 0.00075 1.6E-08 50.0 12.0 64 89-152 43-107 (109)
72 PRK09541 emrE multidrug efflux 97.8 0.00051 1.1E-08 51.1 11.0 66 89-154 37-104 (110)
73 PF06800 Sugar_transport: Suga 97.8 0.00065 1.4E-08 58.6 12.4 129 17-149 134-267 (269)
74 PRK11431 multidrug efflux syst 97.7 0.00025 5.3E-09 52.3 8.5 64 90-153 38-102 (105)
75 PF08449 UAA: UAA transporter 97.7 0.0025 5.5E-08 57.0 16.8 134 22-155 155-299 (303)
76 PF05653 Mg_trans_NIPA: Magnes 97.7 0.00029 6.2E-09 62.6 10.4 122 163-306 3-124 (300)
77 PRK09541 emrE multidrug efflux 97.7 0.00021 4.5E-09 53.2 6.9 63 244-306 42-105 (110)
78 PF04657 DUF606: Protein of un 97.6 0.0022 4.7E-08 50.0 11.8 130 168-301 2-138 (138)
79 PF06379 RhaT: L-rhamnose-prot 97.5 0.057 1.2E-06 48.0 23.2 253 51-304 33-340 (344)
80 COG2076 EmrE Membrane transpor 97.5 0.00038 8.3E-09 50.7 6.4 60 246-305 44-104 (106)
81 PRK10650 multidrug efflux syst 97.4 0.0014 3E-08 48.6 8.7 58 246-303 49-107 (109)
82 PRK11431 multidrug efflux syst 97.4 0.00073 1.6E-08 49.8 6.8 61 245-305 42-103 (105)
83 PF04657 DUF606: Protein of un 97.4 0.008 1.7E-07 46.9 13.1 126 24-150 4-138 (138)
84 KOG4510 Permease of the drug/m 97.3 0.00034 7.3E-09 59.2 4.7 135 164-306 35-171 (346)
85 COG3238 Uncharacterized protei 97.2 0.0058 1.3E-07 47.7 10.6 137 166-304 4-146 (150)
86 PF00893 Multi_Drug_Res: Small 97.2 0.0039 8.4E-08 45.1 8.9 54 91-144 39-93 (93)
87 PF07857 DUF1632: CEO family ( 97.1 0.0014 3E-08 56.3 6.6 131 168-308 1-138 (254)
88 PF04142 Nuc_sug_transp: Nucle 97.1 0.0026 5.7E-08 54.8 8.3 69 241-309 26-94 (244)
89 PF10639 UPF0546: Uncharacteri 97.0 0.0012 2.6E-08 49.1 4.8 68 84-151 44-112 (113)
90 PF00893 Multi_Drug_Res: Small 96.9 0.013 2.7E-07 42.4 8.9 53 243-295 40-93 (93)
91 PRK13499 rhamnose-proton sympo 96.8 0.0082 1.8E-07 54.0 9.0 144 164-310 4-159 (345)
92 TIGR00803 nst UDP-galactose tr 96.6 0.022 4.7E-07 48.4 10.0 66 85-150 156-221 (222)
93 PF10639 UPF0546: Uncharacteri 96.5 0.02 4.4E-07 42.6 7.7 109 174-302 3-112 (113)
94 KOG1441 Glucose-6-phosphate/ph 96.5 0.011 2.4E-07 52.5 7.4 136 20-155 162-309 (316)
95 KOG2765 Predicted membrane pro 96.2 0.062 1.4E-06 48.1 10.3 140 16-156 242-393 (416)
96 KOG1581 UDP-galactose transpor 96.0 0.12 2.7E-06 44.9 10.9 120 36-155 187-315 (327)
97 KOG1580 UDP-galactose transpor 95.9 0.11 2.3E-06 43.6 9.7 79 77-155 237-315 (337)
98 COG3238 Uncharacterized protei 95.8 0.54 1.2E-05 36.9 13.1 131 21-152 5-145 (150)
99 KOG2922 Uncharacterized conser 95.4 0.038 8.3E-07 48.4 5.7 125 162-310 16-142 (335)
100 COG4975 GlcU Putative glucose 95.2 0.011 2.3E-07 49.7 1.9 136 168-311 3-143 (288)
101 KOG4314 Predicted carbohydrate 94.0 0.099 2.2E-06 42.5 4.6 62 246-307 67-128 (290)
102 KOG1444 Nucleotide-sugar trans 93.8 0.72 1.6E-05 40.7 9.9 109 47-155 183-302 (314)
103 PF06379 RhaT: L-rhamnose-prot 93.5 0.4 8.6E-06 42.8 7.9 146 163-311 3-160 (344)
104 KOG2234 Predicted UDP-galactos 93.5 1.9 4E-05 38.7 12.0 136 169-304 17-164 (345)
105 KOG1442 GDP-fucose transporter 93.2 0.17 3.8E-06 43.4 4.9 136 19-154 183-328 (347)
106 PRK02237 hypothetical protein; 92.7 2.9 6.3E-05 30.6 9.9 50 105-154 56-106 (109)
107 COG5070 VRG4 Nucleotide-sugar 90.4 1.6 3.5E-05 36.5 7.4 105 50-154 184-297 (309)
108 KOG3912 Predicted integral mem 90.3 4.2 9.2E-05 35.4 10.1 65 241-305 95-159 (372)
109 PF02694 UPF0060: Uncharacteri 89.7 3.1 6.8E-05 30.4 7.6 54 102-155 51-105 (107)
110 PRK02237 hypothetical protein; 89.4 1.6 3.5E-05 31.9 6.0 46 262-307 63-108 (109)
111 PF07857 DUF1632: CEO family ( 89.3 11 0.00025 32.5 12.2 119 34-154 8-135 (254)
112 KOG4831 Unnamed protein [Funct 88.9 0.69 1.5E-05 33.5 3.7 70 83-152 54-124 (125)
113 PF02694 UPF0060: Uncharacteri 88.8 1.2 2.7E-05 32.4 5.0 45 263-307 62-106 (107)
114 KOG1443 Predicted integral mem 88.0 18 0.00039 32.1 12.4 57 95-151 257-313 (349)
115 KOG1582 UDP-galactose transpor 80.9 18 0.00038 31.5 9.1 76 80-155 259-334 (367)
116 PRK06638 NADH:ubiquinone oxido 77.5 40 0.00087 28.0 10.7 33 273-305 133-167 (198)
117 COG1742 Uncharacterized conser 77.4 15 0.00033 26.7 6.6 43 265-307 65-107 (109)
118 KOG1583 UDP-N-acetylglucosamin 76.8 34 0.00073 30.0 9.6 134 18-155 161-316 (330)
119 COG1742 Uncharacterized conser 76.3 27 0.00059 25.4 7.7 42 114-155 65-106 (109)
120 COG4858 Uncharacterized membra 74.7 25 0.00054 28.6 7.8 100 23-128 102-205 (226)
121 PF07168 Ureide_permease: Urei 73.4 0.42 9E-06 41.8 -2.5 128 173-303 2-145 (336)
122 PF06123 CreD: Inner membrane 70.3 98 0.0021 29.2 15.4 14 46-59 320-333 (430)
123 PF04342 DUF486: Protein of un 68.5 5.9 0.00013 28.9 2.8 35 117-151 72-106 (108)
124 PF04342 DUF486: Protein of un 67.1 5.4 0.00012 29.1 2.4 31 272-302 76-106 (108)
125 PRK11715 inner membrane protei 65.6 1.2E+02 0.0027 28.6 14.9 25 129-153 380-404 (436)
126 KOG2766 Predicted membrane pro 65.2 2.9 6.2E-05 35.8 0.8 62 246-307 92-153 (336)
127 PF05297 Herpes_LMP1: Herpesvi 63.5 2.3 5E-05 36.7 0.0 68 105-176 47-116 (381)
128 PF14851 FAM176: FAM176 family 62.3 46 0.00099 26.3 6.9 24 251-278 12-35 (153)
129 PRK11715 inner membrane protei 61.9 1.4E+02 0.0031 28.2 11.2 8 81-88 331-338 (436)
130 KOG2322 N-methyl-D-aspartate r 60.8 54 0.0012 27.9 7.5 37 164-200 192-229 (237)
131 TIGR02865 spore_II_E stage II 55.9 2.5E+02 0.0053 28.9 12.7 44 108-151 11-54 (764)
132 PF08507 COPI_assoc: COPI asso 53.9 7.4 0.00016 30.1 1.4 13 289-301 90-102 (136)
133 PF06123 CreD: Inner membrane 53.6 2E+02 0.0044 27.2 11.8 80 75-154 319-399 (430)
134 KOG4831 Unnamed protein [Funct 53.3 19 0.00041 26.3 3.1 57 247-303 67-124 (125)
135 PF06570 DUF1129: Protein of u 50.8 1.5E+02 0.0032 24.7 11.1 32 77-108 142-173 (206)
136 COG3169 Uncharacterized protei 48.2 1E+02 0.0022 22.2 6.7 32 272-303 83-114 (116)
137 PF05977 MFS_3: Transmembrane 46.3 2.9E+02 0.0063 26.9 25.7 15 265-279 353-367 (524)
138 PF12911 OppC_N: N-terminal TM 45.5 41 0.00088 21.1 3.7 40 7-46 2-41 (56)
139 KOG2533 Permease of the major 44.5 2.6E+02 0.0057 27.0 10.4 42 267-308 181-230 (495)
140 PF05684 DUF819: Protein of un 42.5 2.8E+02 0.0061 25.7 12.0 83 130-213 14-101 (378)
141 COG2271 UhpC Sugar phosphate p 41.7 1.4E+02 0.0029 28.2 7.6 48 262-310 163-211 (448)
142 PF11381 DUF3185: Protein of u 41.2 43 0.00094 21.7 3.2 20 137-156 1-20 (59)
143 PF06609 TRI12: Fungal trichot 40.6 3.8E+02 0.0083 26.6 19.7 49 132-186 378-426 (599)
144 PRK01061 Na(+)-translocating N 40.3 2.4E+02 0.0052 24.3 10.3 20 284-303 183-202 (244)
145 COG3086 RseC Positive regulato 40.2 63 0.0014 25.2 4.4 26 103-128 70-95 (150)
146 KOG1623 Multitransmembrane pro 40.0 77 0.0017 27.2 5.4 65 130-195 92-156 (243)
147 PF14283 DUF4366: Domain of un 39.6 25 0.00054 29.7 2.4 14 297-310 174-187 (218)
148 PRK11380 hypothetical protein; 37.3 1.9E+02 0.0041 26.3 7.5 23 82-104 118-140 (353)
149 PF10225 DUF2215: Uncharacteri 35.2 3E+02 0.0064 23.8 9.8 43 142-184 15-57 (249)
150 PF12822 DUF3816: Protein of u 33.9 2.4E+02 0.0052 22.3 8.8 77 22-98 39-120 (172)
151 COG3476 Tryptophan-rich sensor 33.9 1.1E+02 0.0024 24.4 5.0 59 243-301 62-121 (161)
152 PF15345 TMEM51: Transmembrane 33.7 7.1 0.00015 32.8 -1.7 22 290-311 67-88 (233)
153 PLN00028 nitrate transmembrane 33.1 2E+02 0.0044 27.3 7.9 14 288-301 416-429 (476)
154 PF11023 DUF2614: Protein of u 32.6 1.4E+02 0.003 22.2 5.0 25 130-154 5-29 (114)
155 PF09656 PGPGW: Putative trans 32.6 1.3E+02 0.0029 19.0 5.1 45 136-191 4-48 (53)
156 PF10754 DUF2569: Protein of u 29.1 2.8E+02 0.0061 21.7 7.1 30 161-190 115-144 (149)
157 TIGR00893 2A0114 d-galactonate 28.6 4.2E+02 0.009 23.5 10.4 9 185-193 48-56 (399)
158 PTZ00264 circumsporozoite-rela 27.4 1.3E+02 0.0029 22.5 4.2 14 297-310 94-107 (148)
159 PF13127 DUF3955: Protein of u 27.4 1.7E+02 0.0038 19.2 4.4 38 17-54 2-40 (63)
160 PF08042 PqqA: PqqA family; I 26.5 30 0.00066 17.0 0.5 6 1-6 1-6 (20)
161 COG2917 Intracellular septatio 26.1 3.6E+02 0.0077 21.9 8.2 84 97-186 12-97 (180)
162 COG3169 Uncharacterized protei 25.7 2.6E+02 0.0057 20.2 11.2 33 120-152 82-114 (116)
163 TIGR02840 spore_YtaF putative 25.6 70 0.0015 26.7 2.9 48 256-303 31-80 (206)
164 COG1295 Rbn Ribonuclease BN fa 25.0 5E+02 0.011 23.1 12.2 15 51-65 185-199 (303)
165 PF11628 TCR_zetazeta: T-cell 24.5 1.1E+02 0.0024 17.2 2.5 25 112-136 7-31 (33)
166 PF04246 RseC_MucC: Positive r 24.3 1.4E+02 0.003 22.9 4.2 24 105-128 65-88 (135)
167 CHL00196 psbY photosystem II p 23.9 1.1E+02 0.0024 17.6 2.5 20 167-186 6-25 (36)
168 PRK10862 SoxR reducing system 22.8 1.4E+02 0.0031 23.6 4.0 26 103-128 70-95 (154)
169 PF05360 YiaAB: yiaA/B two hel 22.6 1.1E+02 0.0024 19.3 2.7 12 3-14 21-32 (53)
170 PF14851 FAM176: FAM176 family 22.2 45 0.00098 26.4 1.0 9 282-290 20-28 (153)
171 PRK09412 anaerobic C4-dicarbox 21.5 7E+02 0.015 23.6 11.4 13 121-133 7-19 (433)
172 PF10101 DUF2339: Predicted me 21.5 8.6E+02 0.019 24.7 23.4 95 32-127 14-110 (745)
173 PF11872 DUF3392: Protein of u 21.2 3.5E+02 0.0075 20.0 5.7 24 166-189 52-75 (106)
174 PF08372 PRT_C: Plant phosphor 20.5 49 0.0011 26.3 0.9 18 294-311 8-25 (156)
175 PF11361 DUF3159: Protein of u 20.0 5E+02 0.011 21.4 7.8 71 110-185 29-99 (187)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=2.3e-38 Score=279.22 Aligned_cols=298 Identities=45% Similarity=0.825 Sum_probs=272.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHH
Q 019439 15 VTLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLLG 88 (341)
Q Consensus 15 ~~~~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~------~~~~~~~~~~~g 88 (341)
++|+.++.+++|+++++|.++++.+++.+.+++..-|..++++.++...+++.++...|++. .+++|+++++.+
T Consensus 7 ~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla 86 (334)
T PF06027_consen 7 FTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHH
Confidence 67899999999999999999999999999998887899999999999888888877666533 567889999999
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCC--C-CCCCcc
Q 019439 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG--D-GGGSRP 165 (341)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~--~-~~~~~~ 165 (341)
++...+|++.+.|++|++.+.++++.++..+++++++++++|||+++.|++|+++++.|+.++...|... + ....++
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~ 166 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNP 166 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876522 1 245678
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHH
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMF 245 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (341)
..|+++++.++++||++++..|+..++.|..++..+.++++.++..+...+.|..+.+..+|.......+++..++.+..
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888889988888888888888888888899999
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCCCC
Q 019439 246 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNPM 312 (341)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 312 (341)
|.+....++..+|+..++..++..+++++++++++|+++++..++|.++|++|.++++..+++.+++
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999877655444
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=7.9e-32 Score=243.05 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh---hh---hHHHHHHHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ---RL---RVAWYWYLLLGFVDVQ 93 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~---~~---~~~~~~~~~~g~~~~~ 93 (341)
.+..+....+-++..+.....+...+ ...+|..+.++|+.+++++++++.+.+++ .+ ++++....+.|+++..
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 34556666666777888888887775 45678889999999999999888764422 12 3445677778888844
Q ss_pred HHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHH------hhcccchhhHHHHHHHHHhhHHHhhcCCCC---------
Q 019439 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLF------LGTRYSLWQLLGAALCVLGLGLVLLSDAGG--------- 158 (341)
Q Consensus 94 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~------l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~--------- 158 (341)
.+.+++.+++|++++.++++.++.|+++.++++++ +|||+++++++|++++++|+.++...+...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 46689999999999999999999999999999999 699999999999999999999987633210
Q ss_pred ---------C-CCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCch-hhhHHhHHHHHHHHHHHHHhcccccccc--c
Q 019439 159 ---------D-GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRV-EVVCMIGVYGLLVSAVQLSILELKSLES--V 225 (341)
Q Consensus 159 ---------~-~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (341)
. ....+...|+.+.++++++|++|++..|+..+++++. ...+++...+.+...++....+..+... .
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWII 250 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccccee
Confidence 0 0111224599999999999999999999998887665 4455666666555554544443322111 1
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 226 EWST-NILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
.+.. ...+++.+++ +. .+|.+|++++++.+++.+++..+++|+++++++++++||++++.+++|+++|+.|+.+.++
T Consensus 251 ~~~~~~~~i~y~~i~-t~-lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 251 HFDITLITIVTMAII-TS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred ccchHHHHHHHHHHH-HH-HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1222 2234455544 44 5689999999999999999999999999999999999999999999999999999999876
Q ss_pred cccCC
Q 019439 305 TEKDL 309 (341)
Q Consensus 305 ~~~~~ 309 (341)
.++++
T Consensus 329 ~~~~~ 333 (358)
T PLN00411 329 GKANE 333 (358)
T ss_pred hhhhh
Confidence 54443
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.98 E-value=2.1e-29 Score=223.78 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHH-HHHHH
Q 019439 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RLRVAWYWYLLLGFVDVQG-NFLVN 99 (341)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~g~~~~~~-~~~~~ 99 (341)
.+.-.+..++|+......|... ++.+|..++++|+..+.++++++...+++ ..+++++.....|.++... +.+++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~--~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV--ESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555443 36799999999999999998887765543 2455677777888877555 67888
Q ss_pred Hhh-hccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHH
Q 019439 100 KAY-QFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIF 178 (341)
Q Consensus 100 ~al-~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~ 178 (341)
.+. ++++++.++++.++.|+++.+++.+ +|||+++++++|++++++|+.++..++. .+....|++++++++++
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-----~~~~~~G~l~~l~a~~~ 161 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-----LSGNPWGAILILIASAS 161 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-----cccchHHHHHHHHHHHH
Confidence 888 9999999999999999999999986 7999999999999999999998865421 12345799999999999
Q ss_pred HHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019439 179 FATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGA 258 (341)
Q Consensus 179 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 258 (341)
||.+.+..|+..++ ++.....+....+.....+.....+.......+...+..+.+++.. ++...|.++++++++.++
T Consensus 162 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~-~s~~~~~l~~~~~~~~~~ 239 (292)
T PRK11272 162 WAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVF-GSIIAISAYMYLLRNVRP 239 (292)
T ss_pred HHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCH
Confidence 99999999997543 3444555666666666543333332211111233455566777776 666778999999999999
Q ss_pred hHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 259 TMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 259 ~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
..++...+++|+++.+++++++||+++..+++|+.+++.|+++.++.++
T Consensus 240 ~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 240 ALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998866444
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=3.4e-29 Score=222.67 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHH
Q 019439 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNK 100 (341)
Q Consensus 22 g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 100 (341)
.++++...+++|+......|... +..+|..+.+.|+.++.+++.++.. +++.++.+++.++.+.+.... +.+++.
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~--~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVS--ESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLAL 80 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--ccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHH
Confidence 45566666666666666666543 3679999999999999988887642 222223333344455555544 556777
Q ss_pred hhhc----cchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCC-----CCCcchHHhHH
Q 019439 101 AYQF----SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDG-----GGSRPLLGDVL 171 (341)
Q Consensus 101 al~~----~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~-----~~~~~~~G~~~ 171 (341)
++++ .+++.++++.++.|+++.+++++++|||+++++++|++++++|+.++..++...+. .......|+.+
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL 160 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence 7754 57788899999999999999999999999999999999999999999865431100 01123469999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 019439 172 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPF 251 (341)
Q Consensus 172 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (341)
.++++++||.|+++.||..++.++..... ..+.....+.... +.......++..+..+.+.+ . ++...|.++++
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~-~-~t~~~~~l~~~ 234 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAA-A-AMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHH-H-HHHHHHHHHHH
Confidence 99999999999999999977777765432 2222222222222 22222223344455555555 3 56777999999
Q ss_pred HHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 252 VLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 252 ~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
++++.++..++...+++|+++.+++++++||+++..+++|+++|+.|+++....++
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 99999999999999999999999999999999999999999999999988765443
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.97 E-value=2.4e-28 Score=217.71 Aligned_cols=274 Identities=18% Similarity=0.168 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhh
Q 019439 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAY 102 (341)
Q Consensus 24 ~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al 102 (341)
++....+++|+......+...+ +.+|..++++|+.++++.+.++..+++ .+++.....|++.... ..+++.++
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAI 80 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777776543 589999999999988776665543222 1233344456555555 44678888
Q ss_pred hc-cchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHH
Q 019439 103 QF-SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFAT 181 (341)
Q Consensus 103 ~~-~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 181 (341)
++ .+++.++++.++.|+++.+++++++|||++++++++++++++|+.++..++.. ....+..|+.+++.++++|++
T Consensus 81 ~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~---~~~~~~~G~~l~l~aal~~a~ 157 (299)
T PRK11453 81 NFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN---GQHVAMLGFMLTLAAAFSWAC 157 (299)
T ss_pred HhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC---CcchhHHHHHHHHHHHHHHHH
Confidence 88 58899999999999999999999999999999999999999999999854321 122335799999999999999
Q ss_pred HHHHHHHHhhcCCchh---hhHHhHHHHHHHHHHHHHhccccc-----cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019439 182 SNVGEEFFVKKKDRVE---VVCMIGVYGLLVSAVQLSILELKS-----LESVEWSTNILLGFAGYAASSFMFYTLAPFVL 253 (341)
Q Consensus 182 ~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (341)
|.++.|+..++.++.. ...+....+.+.........+.+. ....++..+..+++++.+ ++...|.++++++
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-~t~~~~~l~~~~l 236 (299)
T PRK11453 158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFV-ATIVGYGIWGTLL 236 (299)
T ss_pred HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999865544332 233333333332222222222211 123344566677888877 7777789999999
Q ss_pred hhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 254 KLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 254 ~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
++.++..++....++|+++.+++++++||+++..+++|+++|++|+.+..+.++
T Consensus 237 ~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 237 GRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999998765443
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=5.3e-28 Score=214.79 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHH
Q 019439 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR-QRLRVAWYWYLLLGFVDVQGNF 96 (341)
Q Consensus 18 ~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~ 96 (341)
...+++.+......+++....+.+...+ ..+|..+.++|++++.++++++...++ +..+++++..+..|.+....+.
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 3466788888788888877777777765 478999999999999988887765433 2345667777788887666688
Q ss_pred HHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHH
Q 019439 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGT 176 (341)
Q Consensus 97 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~ 176 (341)
+++++++++|++.++++.++.|+++.+++ +|++.+ ..++.++++|+.++...+.. .......|++++++++
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~---~~~~~~~G~ll~l~aa 157 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQD---VSHVDLTGAALALGAG 157 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCC---cccCChHHHHHHHHHH
Confidence 89999999999999999999999998876 355544 45667889999887743321 2223457999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019439 177 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLS 256 (341)
Q Consensus 177 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (341)
++|++|.+..|+..++.++.... +....++++..+ ....... ....++..+....+++++ ++...|.++++++++.
T Consensus 158 ~~~a~~~v~~r~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~l~lgv~-~t~~~~~l~~~~~~~~ 233 (293)
T PRK10532 158 ACWAIYILSGQRAGAEHGPATVA-IGSLIAALIFVP-IGALQAG-EALWHWSILPLGLAVAIL-STALPYSLEMIALTRL 233 (293)
T ss_pred HHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHH-HHHHccC-cccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 99999999999997777776654 444555555533 3222221 111233344445677777 7777899999999999
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 257 GATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 257 ~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
++..++...+++|+++.+++++++||+++..+++|+++|++|++......++
T Consensus 234 ~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 234 PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999988655433
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.9e-28 Score=218.90 Aligned_cols=266 Identities=15% Similarity=0.132 Sum_probs=204.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 019439 37 SFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL----YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTL 112 (341)
Q Consensus 37 ~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~ 112 (341)
...+|...+ ....|...++.|+..+.+.+.+... .+++..+++++..+..|++....+.+.+.+++|++++.+++
T Consensus 18 ~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 18 NIYNKKLLN-VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344454443 3567999999999888776655521 11233466788899999997666889999999999999999
Q ss_pred hhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhh-
Q 019439 113 LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK- 191 (341)
Q Consensus 113 l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~- 191 (341)
+.++.|+++++++.+++|||+++++++|++++++|+.+.... +.+....|+++.++++++|+++.++.|+..+
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 170 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTI 170 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC------cccccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999876422 2233457999999999999999999999988
Q ss_pred -cCCchhhhHHhHHHHHHHHHHHHHhccccccccccc-------cc-hHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 019439 192 -KKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEW-------ST-NIL--LGFAGYAASSFMFYTLAPFVLKLSGATM 260 (341)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 260 (341)
+.|+.+...++...+.+...+.....+.......++ .. ..+ ....+.+ +....+.+++.++++.++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~sa~t 249 (302)
T TIGR00817 171 KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG-FFHFYQQVAFMLLGRVSPLT 249 (302)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH-HHHHHHHHHHHHHccCCchH
Confidence 789999999999888888765544444322111101 11 111 1111111 22222345667999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 261 FNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 261 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
.++...++|++++++|++++||+++..+++|+++++.|+.++++.+++|+
T Consensus 250 ~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 250 HSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999987654443
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=9.1e-28 Score=210.27 Aligned_cols=254 Identities=17% Similarity=0.073 Sum_probs=201.1
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhccchhHHHHhh
Q 019439 36 MSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG-NFLVNKAYQFSSITSVTLLD 114 (341)
Q Consensus 36 ~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~ 114 (341)
.....+...+ +..+|....+.|++.+.+++.+....+ +.+++++.....|.++... +.+++.|++|+++++++++.
T Consensus 4 ~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~ 80 (260)
T TIGR00950 4 TGVVIGQYLE-GQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLL 80 (260)
T ss_pred hHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHH
Confidence 3344455433 356889899999888888777765444 4555667777888777666 77999999999999999999
Q ss_pred hchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 019439 115 CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD 194 (341)
Q Consensus 115 ~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 194 (341)
++.|+++.+++.+++|||+++++++|++++++|+.++..++ ..+....|+.+++.++++|+.+.+..|+..++.+
T Consensus 81 ~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-----~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~ 155 (260)
T TIGR00950 81 YLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-----NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG 155 (260)
T ss_pred hhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-----cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 99999999999999999999999999999999999987543 2234568999999999999999999999987777
Q ss_pred chh--hhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHH
Q 019439 195 RVE--VVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWA 272 (341)
Q Consensus 195 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~ 272 (341)
+.. ...+.+..+.++..+.....+... ..+...+....+.+.+ ++..+|.++++++++.++..++....++|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~ 232 (260)
T TIGR00950 156 PELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLI-GTALAYFLWNKGLTLVDPSAASILALAEPLVA 232 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 543 333556666666643333332221 2233444456666666 56667899999999999999999999999999
Q ss_pred HHHHHHHhccccchhhhhHHhhheeeee
Q 019439 273 VVFRICFYHQKVDWLYFLAFGIVVIGLI 300 (341)
Q Consensus 273 ~l~~~~~~~e~~~~~~~~G~~li~~g~~ 300 (341)
.+++++++||+++..+++|.++++.|+.
T Consensus 233 ~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 233 LLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998863
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=4.6e-27 Score=209.10 Aligned_cols=271 Identities=15% Similarity=0.088 Sum_probs=195.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--hh---h--HHHHHHHHHHHH
Q 019439 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--RL---R--VAWYWYLLLGFV 90 (341)
Q Consensus 18 ~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~~---~--~~~~~~~~~g~~ 90 (341)
++.||.++..+.+++++......+.. ...+|..+.++|++++.+++.++...+++ .. . ++.......+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 44678999888888888888888764 34789999999999998877766543321 11 1 111122335555
Q ss_pred HHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHh
Q 019439 91 DVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGD 169 (341)
Q Consensus 91 ~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~ 169 (341)
+... +.++++|+++++++.++++.++.|+++++++++++|||+++++++|++++++|+.++..+++ + . .
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-----~-~----~ 151 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-----S-L----P 151 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-----C-c----c
Confidence 5555 88999999999999999999999999999999999999999999999999999999885421 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc--hhhhHHhHHHHHHHHHHHHHhccccc--cccccccchHHHHHHHHHHHHHHH
Q 019439 170 VLVIAGTIFFATSNVGEEFFVKKKDR--VEVVCMIGVYGLLVSAVQLSILELKS--LESVEWSTNILLGFAGYAASSFMF 245 (341)
Q Consensus 170 ~~~l~a~~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 245 (341)
.++++++++||.|.+..|+..++... .....+....+.+... ...+... ....++..+......+. .+...
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~--~t~i~ 226 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLF---AIADSSTSHMGQNPMSLNLLLIAAGI--VTTVP 226 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH---HHccCCcccccCCcHHHHHHHHHHHH--HHHHH
Confidence 46888999999999999886432211 1112223223322211 1111111 11111111222222333 44466
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 246 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
|.++++++++.++..++...+++|+++.+++++++||+++..+++|+++|+.|+.+...+.
T Consensus 227 ~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 227 LLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988887776443
No 10
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.96 E-value=1.2e-30 Score=213.07 Aligned_cols=290 Identities=47% Similarity=0.876 Sum_probs=261.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 019439 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGN 95 (341)
Q Consensus 16 ~~~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (341)
+|++++|+.+|+++++|.++.++.++.++.++...|..++|..+...+++..++...|++..+..|.+++++++...-+|
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaN 92 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEAN 92 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeeccc
Confidence 88999999999999999999999999999998888999999999999999999999999888888999999999999999
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC--CCCCCCCcchHHhHHHH
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GGDGGGSRPLLGDVLVI 173 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~--~~~~~~~~~~~G~~~~l 173 (341)
++...|.||++...+..+.+-..+.+.+++++++|.|..+.++.|+++++.|++++...|. ++...+.++..|+.+.+
T Consensus 93 y~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 93 YFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVI 172 (336)
T ss_pred EEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998776 33356778899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019439 174 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 253 (341)
Q Consensus 174 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (341)
+++-+||+.++..+.+.|+.|..+.+...++.|+++..+. .+.+........|.+. ...++.+.++++..|.+....+
T Consensus 173 ~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~-i~~yl~f~L~MFllYsl~pil~ 250 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA-IFLYLRFALTMFLLYSLAPILI 250 (336)
T ss_pred ecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH-HHHHHHHHHHHHHHHHhhHHhe
Confidence 9999999999999999999999999999999999999876 6667767776666633 4445557779999999999999
Q ss_pred hhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCC
Q 019439 254 KLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 309 (341)
Q Consensus 254 ~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 309 (341)
|..+++..++..+++-.++.++ ..||-..+|...+..+.+..|.++|..+++.+
T Consensus 251 k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~ 304 (336)
T KOG2766|consen 251 KTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDE 304 (336)
T ss_pred ecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCc
Confidence 9999999999999999999998 55677799999999999999999996544433
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=3.9e-26 Score=206.99 Aligned_cols=262 Identities=16% Similarity=0.169 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHHh--h-hh---hhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 019439 34 ALMSFTSSLIADLGVDA-PVTQSAFAYFSLALVYGGVLLYR--R-QR---LRVAWYWYLLLGFVDVQGNFLVNKAYQFSS 106 (341)
Q Consensus 34 ~~~~~~~~~l~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~--~-~~---~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 106 (341)
......+|.+.+ ..+ |+.++.+|++++.++...+...+ + ++ .+.+++..+..|+++...+...+.|+++++
T Consensus 62 ~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444454433 356 99999999999877654443221 1 11 234678889999999888777889999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHH
Q 019439 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGE 186 (341)
Q Consensus 107 ~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 186 (341)
++.++++.++.|+++++++++++|||++++++++++++++|+.+....+ .+....|++++++|++++++++++.
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~------~~~~~~G~~~~l~s~~~~a~~~i~~ 213 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE------LHFTWLAFWCAMLSNLGSSLRSIFA 213 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987532 2335679999999999999999999
Q ss_pred HHHhhcC-------CchhhhHHhHHHHHHHHHHHHHhcccccccc------ccccc--hHHHHHHHHHHHHHHHHHHHH-
Q 019439 187 EFFVKKK-------DRVEVVCMIGVYGLLVSAVQLSILELKSLES------VEWST--NILLGFAGYAASSFMFYTLAP- 250 (341)
Q Consensus 187 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~- 250 (341)
|+..++. ++.+...++...+.++.++.....|...... .++.. .....+ ..+ .+...|.+++
T Consensus 214 k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~-~s~l~~~l~n~ 291 (350)
T PTZ00343 214 KKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIF-FSGVWYYLYNE 291 (350)
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHH-HHHHHHHHHHH
Confidence 9998654 3444555567777777754444344321110 01111 112222 222 3344456666
Q ss_pred ---HHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecc
Q 019439 251 ---FVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 251 ---~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 305 (341)
.++++.++...++...++|+++++++++++||+++..+++|.++++.|+++|++.
T Consensus 292 ~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 292 VAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 5999999999999999999999999999999999999999999999999998764
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=7.8e-25 Score=193.51 Aligned_cols=267 Identities=16% Similarity=0.092 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHH-HHHHHHH
Q 019439 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYR-----RQRLRVAWYWYLLLGFV-DVQGNFL 97 (341)
Q Consensus 24 ~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~g~~-~~~~~~~ 97 (341)
++....+++++.....+|...++ .++ ..++++....+++.|+...+ ++..+++++.....+.+ ....+.+
T Consensus 4 ~~~~~aa~~~a~~~~~~k~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 4 TLVVFSALMHAGWNLMAKSHADK--EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCc--hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 44555666666666665533322 233 34666666777777766543 22233444444444444 4444889
Q ss_pred HHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHH
Q 019439 98 VNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTI 177 (341)
Q Consensus 98 ~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~ 177 (341)
++.++++.+++.++++.++.|+++.+++++++|||+++++++|+.+++.|+.++..++. ......|+.+++++++
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-----~~~~~~g~~~~l~aal 154 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF-----AQHRRKAYAWALAAAL 154 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-----cccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876432 1223468889999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHH----HHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019439 178 FFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVS----AVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 253 (341)
Q Consensus 178 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (341)
+|++|.+..|+..++.++..........+.+.. .+.....+.......+ .......+.+.. .+...|.++++++
T Consensus 155 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~s~l~~~l~~~al 232 (281)
T TIGR03340 155 GTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYA-RQILPSATLGGL-MIGGAYALVLWAM 232 (281)
T ss_pred HHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999998886554444322211111222111 1111111111111111 122334455554 5566789999999
Q ss_pred hhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeee
Q 019439 254 KLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLII 301 (341)
Q Consensus 254 ~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l 301 (341)
++.++..++...+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus 233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999875
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.92 E-value=4.2e-22 Score=173.87 Aligned_cols=242 Identities=15% Similarity=0.066 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh------hh----hHH-HHHHHHHHH
Q 019439 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ------RL----RVA-WYWYLLLGF 89 (341)
Q Consensus 21 ~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~------~~----~~~-~~~~~~~g~ 89 (341)
||+++....+++++......+.+ +..+|.+++++|++++.+++.++...+++ +. +++ +......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~---~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL---KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 37788888888888888888873 24799999999999998887766533221 11 111 223555666
Q ss_pred HHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHh
Q 019439 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGD 169 (341)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~ 169 (341)
+....+.+++.|++++++++++++.++.|+++++++++++|||++++++++++++++|+.++..++ .+ ..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-----~~-~~---- 148 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-----GS-LP---- 148 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-----CC-ch----
Confidence 655558899999999999999999999999999999999999999999999999999999887542 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccc-cchHHHHHHHHHHHHHHHHHH
Q 019439 170 VLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEW-STNILLGFAGYAASSFMFYTL 248 (341)
Q Consensus 170 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 248 (341)
.++++++++|+.|.+..|+..+ .+..+.... ...............+.......+. ..+.++.+.+.. +...|.+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--t~i~~~l 224 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKN-TDLAGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI--TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-CCcchHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH--HHHHHHH
Confidence 3578899999999999999744 333222211 1111122211111111111111112 245555566654 4456899
Q ss_pred HHHHHhhhhhhHHHhhhhhhHHHHHHHHHHH
Q 019439 249 APFVLKLSGATMFNLSLLTADMWAVVFRICF 279 (341)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~ 279 (341)
+..++++.+++.++...+++|+++.+++.+.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999764
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=3.9e-22 Score=177.25 Aligned_cols=277 Identities=22% Similarity=0.287 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHH-H
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QRLRVAWYWYLLLGFVDVQG-N 95 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~-~ 95 (341)
.++.....+.++.+.......+...+. ..++....+.|+....+...+...+++ ++.+.+++...+.+.+.... .
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 334555555555555555555554432 456666677798888877444443332 11122234455566666555 7
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHH-HHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHH
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTW-LFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIA 174 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~-l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~ 174 (341)
.+++.++++++++.++++.++.|+++.+++. +++|||++++++.++.++++|+.++..++..+. .. ...|+.++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~--~~-~~~g~~~~l~ 161 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG--IL-SLLGLLLALA 161 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch--hH-HHHHHHHHHH
Confidence 8999999999999999999999999999997 667999999999999999999999998764211 01 5689999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhH-HhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019439 175 GTIFFATSNVGEEFFVKKKDRVEVVC-MIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 253 (341)
Q Consensus 175 a~~~~a~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (341)
++++++++.+..|+.. +.++..... +... .......+....+.. ...++..+....+.++. .+...+.++.+++
T Consensus 162 a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~i~~~~~~~~~ 236 (292)
T COG0697 162 AALLWALYTALVKRLS-RLGPVTLALLLQLL-LALLLLLLFFLSGFG--APILSRAWLLLLYLGVF-STGLAYLLWYYAL 236 (292)
T ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHH-HHHHHHHHHHhcccc--ccCCHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999987 666655555 3333 222221122222222 22334455666666666 4445689999999
Q ss_pred hhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecc
Q 019439 254 KLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 254 ~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 305 (341)
++.++...+....++|+++.+++++++||+++..+++|+.+++.|+.+....
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 237 RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999998765
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.88 E-value=5e-24 Score=175.55 Aligned_cols=256 Identities=18% Similarity=0.294 Sum_probs=205.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHH
Q 019439 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVL 124 (341)
Q Consensus 48 ~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll 124 (341)
..+|..+.-.|++.-.++..|..+.+++.. +...+.+++.|++++.+.++.|+|++|.+.+.+.++..++|+++.++
T Consensus 61 e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~if 140 (346)
T KOG4510|consen 61 ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIF 140 (346)
T ss_pred ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHH
Confidence 456888888887777666666655554332 23345578889999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhHHHHHHHHHhhHHHhhcCC--CC-----CCC-CCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 019439 125 TWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA--GG-----DGG-GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRV 196 (341)
Q Consensus 125 ~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~--~~-----~~~-~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~ 196 (341)
++.++|||.++...++..+.+.|++++..++. ++ ++. ...+..|...++.++++.|...++.|+..|+.+..
T Consensus 141 aw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~ 220 (346)
T KOG4510|consen 141 AWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAI 220 (346)
T ss_pred HHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEE
Confidence 99999999999999999999999999987764 11 111 24567889999999999999999999998999988
Q ss_pred hhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHH
Q 019439 197 EVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFR 276 (341)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~ 276 (341)
....|..+.+++..++.......-.++. .+.+++..+.+|+ ..+.++++...+++...+--.++..+.+.++++++.
T Consensus 221 msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGv--fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wq 297 (346)
T KOG4510|consen 221 MSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGV--FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQ 297 (346)
T ss_pred EEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehh--hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHH
Confidence 8888888888888865544443323332 2444444444444 445567899999999888888999999999999999
Q ss_pred HHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 277 ICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 277 ~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
+++|||.||++.++|+++++.+.+.....+
T Consensus 298 v~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 298 VLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 999999999999999999998888765544
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.88 E-value=5.5e-20 Score=150.87 Aligned_cols=248 Identities=17% Similarity=0.056 Sum_probs=198.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHH
Q 019439 47 GVDAPVTQSAFAYFSLALVYGGVLLYRR-QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125 (341)
Q Consensus 47 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~ 125 (341)
....|...+.+|..++.+++..+....+ +..++++......|+.....|.+||.+++..|.+.+..+.++.|+.+++++
T Consensus 36 P~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 36 PLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred cccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 4667899999999999999988876544 555677888899999999999999999999999999999999999988876
Q ss_pred HHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHH
Q 019439 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVY 205 (341)
Q Consensus 126 ~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~ 205 (341)
.- +.+..+.+.+++.|+.++...+.. ....+..|..+++.++.||+.|.+..||..+..+..+-+..-+.+
T Consensus 116 sR------r~~d~vwvaLAvlGi~lL~p~~~~---~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~v 186 (292)
T COG5006 116 SR------RLRDFVWVALAVLGIWLLLPLGQS---VWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLV 186 (292)
T ss_pred cc------chhhHHHHHHHHHHHHhheeccCC---cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHH
Confidence 42 456667788889999888854432 344566999999999999999999999997777777777777788
Q ss_pred HHHHHHHHHHhc-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhcccc
Q 019439 206 GLLVSAVQLSIL-ELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKV 284 (341)
Q Consensus 206 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~ 284 (341)
+.++.+ |.... ..+.+ ++++-......+++. ++...|.+-..++++.+....++.+.+||.++.+.|++++||.+
T Consensus 187 Aaviv~-Pig~~~ag~~l--~~p~ll~laLgvavl-SSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~l 262 (292)
T COG5006 187 AALIVL-PIGAAQAGPAL--FSPSLLPLALGVAVL-SSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETL 262 (292)
T ss_pred HHHHHh-hhhhhhcchhh--cChHHHHHHHHHHHH-hcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 888775 44332 22222 223333333344554 88888999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhheeeeeeeecccc
Q 019439 285 DWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 285 ~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
+..||+|++.|+.+..=.....+
T Consensus 263 s~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 263 TLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred CHHHHHHHHHHHHHHhccccccC
Confidence 99999999999876664444333
No 17
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.88 E-value=2.1e-20 Score=166.87 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=212.2
Q ss_pred HHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 019439 36 MSFTSSLIADLGVDA--PVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (341)
Q Consensus 36 ~~~~~~~l~~~~~~~--p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 111 (341)
.+.....+.+.+... |..+++.++....+.........+ +..+.+++.+...+++....+.+.+.|++|.|.+...
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 344445554444444 999999999888877666555433 4556678889999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCC----CCcchHHhHHHHHHHHHHHHHHHHHH
Q 019439 112 LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGG----GSRPLLGDVLVIAGTIFFATSNVGEE 187 (341)
Q Consensus 112 ~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~----~~~~~~G~~~~l~a~~~~a~~~v~~~ 187 (341)
++.+..|+++++++.+++|+|.+++++.++++..+|+.+....+..++.. ......|+.+.+.+.++.+...+++|
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876533211 11223499999999999999999999
Q ss_pred HHhhc--CCchhhhHHhHHHHHHHHHHHHHhcc-c--ccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 019439 188 FFVKK--KDRVEVVCMIGVYGLLVSAVQLSILE-L--KSLES-VEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMF 261 (341)
Q Consensus 188 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 261 (341)
+..++ .++.+.+++...++.++..+...... . .+..+ ....+......+....+............++.++...
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~ 254 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT 254 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 99876 46678889999999888875555521 1 11111 1111112222222222334445666678899999999
Q ss_pred HhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCC
Q 019439 262 NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 309 (341)
Q Consensus 262 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 309 (341)
+++..+..+++++++++++++++++.+++|.++++.|..++.+.++++
T Consensus 255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999998877665
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.86 E-value=2e-19 Score=159.10 Aligned_cols=272 Identities=13% Similarity=0.025 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHH
Q 019439 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL---RVAWYWYLLLGFVDVQGNFLV 98 (341)
Q Consensus 22 g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ 98 (341)
++++..+.+++++..+...+... + .++.+.. |..++.+++..+....+++. ++-+..-++.|.+...++.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g-~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~ 76 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--G-GPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQ 76 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--C-CHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhH
Confidence 35666667777777777776654 3 3333332 66666665554433322211 222344555566667778999
Q ss_pred HHhhhccchhHHHHhhh-chHHHHHHHHHHHhhcccchhh----HHHHHHHHHhhHHHhhcCCCCCCCC--CcchHHhHH
Q 019439 99 NKAYQFSSITSVTLLDC-CTIAWAIVLTWLFLGTRYSLWQ----LLGAALCVLGLGLVLLSDAGGDGGG--SRPLLGDVL 171 (341)
Q Consensus 99 ~~al~~~~~~~~~~l~~-~~pi~~~ll~~l~l~e~~~~~~----~ig~~l~~~Gv~l~~~~~~~~~~~~--~~~~~G~~~ 171 (341)
+.+.++++++.+.++.+ +.+++..+++.+++|||.++++ ++|++++++|++++...+..+...+ .+...|+.+
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~ 156 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL 156 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence 99999999999998887 8999999999999999999999 9999999999999876543211101 233689999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 019439 172 VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPF 251 (341)
Q Consensus 172 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (341)
+++++++|+.|.+..|+. +.||.+..+.+...-.+...+....+... ++...+........|+. . ..+|.++..
T Consensus 157 ~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gi~-~-~ia~~~y~~ 230 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILA--KPLKKYAILLNILPGLM-W-GIGNFFYLF 230 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence 999999999999999975 47888875544442222221111111100 11111122222224444 3 556788888
Q ss_pred HHh-hhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhh----hHHhhheeeeeeeec
Q 019439 252 VLK-LSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYF----LAFGIVVIGLIIYST 304 (341)
Q Consensus 252 ~~~-~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~ 304 (341)
+.+ +.+++.++.....+|+.+.+++++++||+.+..++ +|.++++.|+++...
T Consensus 231 ~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 231 SAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999 89999999999999999999999999999999999 999999999887643
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.84 E-value=3e-18 Score=144.51 Aligned_cols=273 Identities=16% Similarity=0.109 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH--hhhhh------hHHHHHHHHHHH
Q 019439 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQRL------RVAWYWYLLLGF 89 (341)
Q Consensus 18 ~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~~~~------~~~~~~~~~~g~ 89 (341)
...+|++++....++++..-...+.+. ..++..+...|.+.+...+...... +++.. ++.+....+.++
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 345699999988888888877777774 4678899999998887766554432 22211 122333444454
Q ss_pred HHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHh
Q 019439 90 VDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGD 169 (341)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~ 169 (341)
+.......|..|..+..+-+++.-++..|++.++++.+++|||+++.|+++++++.+||...+.. .++.++
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~------~g~lpw--- 151 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL------LGSLPW--- 151 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH------cCCCcH---
Confidence 44444669999999999999999999999999999999999999999999999999999999986 344453
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccc--cccccccchHHHHHHHHHHHHHHHHH
Q 019439 170 VLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKS--LESVEWSTNILLGFAGYAASSFMFYT 247 (341)
Q Consensus 170 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (341)
.++.-++.|+.|...-|+. +.|+.+-.......-.+..+......+.+. ....+...+..+...|.+ +.....
T Consensus 152 -val~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~v--TavpL~ 226 (293)
T COG2962 152 -VALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLV--TAVPLL 226 (293)
T ss_pred -HHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHH--HHHHHH
Confidence 4555588999999987663 567777666666666666654444333322 121223334444444443 444468
Q ss_pred HHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 248 LAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
++..+-++.+-++.++..+++|..-.+++++++||+++..++...+.|-+|++++..+.-
T Consensus 227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999986543
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=150.64 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCC--CC
Q 019439 82 YWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAG--GD 159 (341)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~--~~ 159 (341)
+..+..+.+.+..+++++.|+++++++..+++.+++.+|+..++.++.+||+++.+.+++.+.+.|++++...+.. ++
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 4456677888888999999999999999999999999999999999999999999999999999999999987652 22
Q ss_pred CCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCC-ch---hhhHHhHHHHHHHHHHHHHhccccccccc---cccchHH
Q 019439 160 GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD-RV---EVVCMIGVYGLLVSAVQLSILELKSLESV---EWSTNIL 232 (341)
Q Consensus 160 ~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 232 (341)
........|.++++++|+.||+|.++.||...+++ .. .+..+.+++..+...++..+.+....+.+ +-.....
T Consensus 240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~ 319 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSL 319 (416)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEe
Confidence 34556689999999999999999999999876652 33 34445555665555544444332222221 1122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 233 LGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
+++.+.. .++..-.+|.++.-..++.++.+.+.++...+++.+.++-|..+++.+++|.+.|+.|.+..++..+...
T Consensus 320 vv~~~li-gtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 320 VVFNNLI-GTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred eeHhhHH-HHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 4444444 5556678899999999999999988888889999999999999999999999999999999998665443
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=155.93 Aligned_cols=258 Identities=16% Similarity=0.247 Sum_probs=211.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHH
Q 019439 47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQR-----LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWA 121 (341)
Q Consensus 47 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~ 121 (341)
++.-|+.++..++..+.+.+......+..+ .+..++..+..|+....++++.+.|+.+.+++.++++..++|+++
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t 123 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT 123 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence 666799999998887777766665544322 234688899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhh----cCCchh
Q 019439 122 IVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK----KKDRVE 197 (341)
Q Consensus 122 ~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~----~~~~~~ 197 (341)
++++.++.+|+.++..+..++....|+.+.... +...+..|...++.+.+..+..+++.|+.++ +.|+.+
T Consensus 124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~------e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ 197 (316)
T KOG1441|consen 124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT------ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMN 197 (316)
T ss_pred HHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchH
Confidence 999999999999999999999999999999885 4556779999999999999999999999984 278999
Q ss_pred hhHHhHHHHHHHHHHHHHhcc-cccc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHH
Q 019439 198 VVCMIGVYGLLVSAVQLSILE-LKSL---ESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAV 273 (341)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~ 273 (341)
.+.++...+.+..++|+.... +... ...+|........+.. .+.+..+...+..+.+++|.+.++.+...-++.+
T Consensus 198 ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi 276 (316)
T KOG1441|consen 198 LLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVI 276 (316)
T ss_pred HHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEE
Confidence 999999999888875554433 3222 2223333322222222 3666667888889999999999999999988899
Q ss_pred HHHHHHhccccchhhhhHHhhheeeeeeeeccccCCCC
Q 019439 274 VFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNP 311 (341)
Q Consensus 274 l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 311 (341)
+.++++|+|+.++.+..|+++.++|+++|++.+.++++
T Consensus 277 ~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 277 VVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred EeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999987765543
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.8e-15 Score=130.30 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHHhh----hh-----------hhHHHHHHHHHHHHHHH
Q 019439 31 FTLALMSFTSSLIADLG--VDAPVTQSAFAYFSLALVYGGVLLYRR----QR-----------LRVAWYWYLLLGFVDVQ 93 (341)
Q Consensus 31 l~~~~~~~~~~~l~~~~--~~~p~~~~~~r~~~~~l~l~~~~~~~~----~~-----------~~~~~~~~~~~g~~~~~ 93 (341)
...++.....++..+.+ ...|...++.--.+-.++....++++. ++ .+++..+..+.+++...
T Consensus 25 ~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYal 104 (345)
T KOG2234|consen 25 AQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYAL 104 (345)
T ss_pred HHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHH
Confidence 33455555555554433 344666666555555555444444331 11 12345677888888888
Q ss_pred HHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC---CC--CCCCCcchHH
Q 019439 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA---GG--DGGGSRPLLG 168 (341)
Q Consensus 94 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~---~~--~~~~~~~~~G 168 (341)
.|.++|.++.+.+++..++..++..+.|++++.++++||++++||.++++.++|+.++..+.. +. +....++..|
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G 184 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLG 184 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhh
Confidence 888999999999999999999999999999999999999999999999999999999993322 11 1345567899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHHhHHHHHHHHHHHHHhccccccc--c--ccccchHHHHHHHHHHHH
Q 019439 169 DVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLE--S--VEWSTNILLGFAGYAASS 242 (341)
Q Consensus 169 ~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 242 (341)
....+.++..-++..++.++.+|+- +........+..|.++.++..+..+..... . ..|....+...+.-+..
T Consensus 185 ~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~g- 263 (345)
T KOG2234|consen 185 LVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVG- 263 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhcc-
Confidence 9999999999999999999999763 444455677788888887555555443331 1 12333333333322222
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCC
Q 019439 243 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 309 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 309 (341)
-++....+++.+...-.....+..+++.+.++.+++-.||....+|..+++.++.+|...+.+.
T Consensus 264 ---GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 264 ---GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred ---chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 2555567777777777777767778999999999999999999999999999999999555543
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=1.8e-15 Score=129.60 Aligned_cols=215 Identities=18% Similarity=0.181 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC
Q 019439 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~ 156 (341)
.+++..++.+.+++....|.+.+.++++.+++..+++.++..++|++++.+++|+|++++||+++++.++|+.++..++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCC----C-------CCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHHhHHHHHHHHHHHHHhccccccc
Q 019439 157 GGD----G-------GGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLE 223 (341)
Q Consensus 157 ~~~----~-------~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (341)
.+. . ...+...|+...+.++++.++..++.||..|+. +........+..+.++.++.....++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 321 0 123457899999999999999999999999885 444455677788888876554444433222
Q ss_pred cc----cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhh
Q 019439 224 SV----EWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIV 295 (341)
Q Consensus 224 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 295 (341)
+. .|..+.+ ..+....+++ ++....+|+.+...-+.....+.+++.+.++++|+.+++....+|..++
T Consensus 173 ~~g~f~G~~~~~~---~~i~~~a~gG-llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVW---IVIFLQAIGG-LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHH---HHHHHHHHhh-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 21 2233222 2222233332 6667789999999888888888899999999999999999999998764
No 24
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=126.32 Aligned_cols=257 Identities=24% Similarity=0.316 Sum_probs=193.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 019439 47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-----------------RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITS 109 (341)
Q Consensus 47 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-----------------~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~ 109 (341)
+..+|+.++...|+.-++++..+.+.|.+.. +-+...++..+++...+..++|.++.+++++.
T Consensus 35 gfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASs 114 (372)
T KOG3912|consen 35 GFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASS 114 (372)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHH
Confidence 4667999999889888888888877654211 11134456689999999999999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCC---C-CCCCcchHHhHHHHHHHHHHHHHHHH
Q 019439 110 VTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG---D-GGGSRPLLGDVLVIAGTIFFATSNVG 185 (341)
Q Consensus 110 ~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~---~-~~~~~~~~G~~~~l~a~~~~a~~~v~ 185 (341)
.++++....+|+.+++.-+++++++.+||+|+....+|++.+...|... . .+.++...|+++.+.+-+.-|...++
T Consensus 115 fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~ 194 (372)
T KOG3912|consen 115 FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVC 194 (372)
T ss_pred HHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765421 1 23456789999999999999999999
Q ss_pred HHHHhhc--CCchhhhHHhHHHHHHHHHHHHHhc---c-cccc---cc---cccc---------chHHHHHHHHHHHHHH
Q 019439 186 EEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSIL---E-LKSL---ES---VEWS---------TNILLGFAGYAASSFM 244 (341)
Q Consensus 186 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~---~~---~~~~---------~~~~~~~~~~~~~~~~ 244 (341)
.+|..++ .+|.+...+.++.|.++..+..... . +... +. .||. ....+...+.. .++.
T Consensus 195 Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~-vSiA 273 (372)
T KOG3912|consen 195 EEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFT-VSIA 273 (372)
T ss_pred HHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhh-hhee
Confidence 9999876 6889999999999966654333221 1 1011 00 1222 12233444444 3333
Q ss_pred HHHHHHH-HHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 245 FYTLAPF-VLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 245 ~~~~~~~-~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
+|-+.-. ..+..+++.-.+.-.+...+-.++++.+..|.....|+.|.++.+.|+++|+-
T Consensus 274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 34447777777777777777788888899999999999999999999999973
No 25
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=8.8e-13 Score=113.21 Aligned_cols=286 Identities=14% Similarity=0.076 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHHHHhh---hh-hhHHHHHHHHHHHHHHHHH
Q 019439 21 YLLFLGQLVSFTLALMSFTSSLIA-DLGVDAPVTQSAFAYFSLALVYGGVLLYRR---QR-LRVAWYWYLLLGFVDVQGN 95 (341)
Q Consensus 21 ~g~~~~~~~al~~~~~~~~~~~l~-~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~~ 95 (341)
+.+.-+..-++..+......++.. ++++.........+.+.+.+.+......+- ++ .++..+++....++.....
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i 91 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGML 91 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHH
Confidence 346666666666677777777664 345544455555788777766665543332 22 2444677777888888878
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHH
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAG 175 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a 175 (341)
+.-..+++|.++...+++....|+++++...+++|.|++...|.++....+|.......+ ......|+.+.+..
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d------~sf~~~gY~w~~~n 165 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD------LSFNLRGYSWALAN 165 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc------ceecchhHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999988887654 33344699999999
Q ss_pred HHHHHHHHHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHHhccccc---cccccccch-HHHHHHHHHHHHHHHHHHH
Q 019439 176 TIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLSILELKS---LESVEWSTN-ILLGFAGYAASSFMFYTLA 249 (341)
Q Consensus 176 ~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 249 (341)
.+.-+.+.+..|+-.+. .+....+++..+...+...+...+.+..+ ....+|... ........++..++...+-
T Consensus 166 ~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s 245 (314)
T KOG1444|consen 166 CLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTS 245 (314)
T ss_pred HHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998655 56677888888888888866555554322 111112211 1122212222233333444
Q ss_pred HHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCCCC
Q 019439 250 PFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLNPM 312 (341)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 312 (341)
.+..+..+++..++++......+.+.+.+++|++.++...+|..+-++|-++|++...++++.
T Consensus 246 ~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 246 FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 567778888888888876766677777777788899999999999999999999887655444
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.59 E-value=1.6e-13 Score=116.20 Aligned_cols=252 Identities=10% Similarity=0.130 Sum_probs=179.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH-hhhhh-------hHH-HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhch
Q 019439 47 GVDAPVTQSAFAYFSLALVYGGVLLY-RRQRL-------RVA-WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCT 117 (341)
Q Consensus 47 ~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~-------~~~-~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~ 117 (341)
.+.-|...+..+.+...+........ +.+.+ +.+ .++....|++...-..+-+.+++|++.+.+++..+.+
T Consensus 41 ~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSs 120 (349)
T KOG1443|consen 41 NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSS 120 (349)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccH
Confidence 34448888888877666554433322 21111 122 2233344444433366889999999999999999999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhc-----
Q 019439 118 IAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK----- 192 (341)
Q Consensus 118 pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~----- 192 (341)
++|+.+++.++.=||+++.-..-+.++.+|+++++..+ .+....|..+...++++-++...+.++.+++
T Consensus 121 i~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~ 194 (349)
T KOG1443|consen 121 ILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK 194 (349)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999863 3456689999999999888888888888766
Q ss_pred CCchhhhHHhHHHHHHHHHHHHHhccccccc-------ccccc-chHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHh
Q 019439 193 KDRVEVVCMIGVYGLLVSAVQLSILELKSLE-------SVEWS-TNILLGFAGY-AASSFMFYTLAPFVLKLSGATMFNL 263 (341)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~ 263 (341)
.+|............+..++....+|+.... ..+.. .+.....++. +..++.--.+-+....+++....++
T Consensus 195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSI 274 (349)
T KOG1443|consen 195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSI 274 (349)
T ss_pred CCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeH
Confidence 3577777777777777776566666654321 11111 1111222111 1122222233444666788888899
Q ss_pred hhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 264 SLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 264 ~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
.+...-+.+.+++.++.+|.++...++|..+...|+.++..
T Consensus 275 aGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 275 AGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 88888899999999999999999999999999999999843
No 27
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.8e-13 Score=113.79 Aligned_cols=256 Identities=15% Similarity=0.166 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHh
Q 019439 51 PVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFL 129 (341)
Q Consensus 51 p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l 129 (341)
-|.+++.+++.-..+.+..+. .+.+++..+|+.+..++++....+.+-+.++.|.+-....+..++..+-+++.+.++-
T Consensus 75 GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIq 154 (367)
T KOG1582|consen 75 GWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQ 154 (367)
T ss_pred chHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeec
Confidence 577888777666554443322 3334555678888888888877788999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHHhHHHHH
Q 019439 130 GTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVCMIGVYGL 207 (341)
Q Consensus 130 ~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~ 207 (341)
+.|.+....++..+..+|+.+.+..|+. ...+....|+.+.-+|-++.|+-...+++.++. .+..++.++....|.
T Consensus 155 GkRY~v~d~~aA~lm~lGli~FTLADs~--~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~ 232 (367)
T KOG1582|consen 155 GKRYGVHDYIAAMLMSLGLIWFTLADSQ--TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGF 232 (367)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhcccc--cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccH
Confidence 9999999999999999999999998765 245566789999999999999988888888776 456778889889998
Q ss_pred HHHHHHHHhccc-----cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhcc
Q 019439 208 LVSAVQLSILEL-----KSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQ 282 (341)
Q Consensus 208 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e 282 (341)
++.+.+...... ....+.+|.......+... +++.........++..++.++..+....-.+++++++++|..
T Consensus 233 vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~--~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsK 310 (367)
T KOG1582|consen 233 VFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL--AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSK 310 (367)
T ss_pred HHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH--HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcC
Confidence 888766554322 1111223333333333333 333334555567777899998888888999999999999999
Q ss_pred ccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 283 KVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 283 ~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
++|....-|..+++.|+.+-.++++.+.
T Consensus 311 PfT~qy~~~gllv~lgI~Ln~ysk~nk~ 338 (367)
T KOG1582|consen 311 PFTEQYVWSGLLVVLGIYLNMYSKRNKI 338 (367)
T ss_pred chHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence 9999999999999999999888775443
No 28
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=5.3e-13 Score=113.09 Aligned_cols=258 Identities=16% Similarity=0.210 Sum_probs=204.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHH
Q 019439 48 VDAPVTQSAFAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLT 125 (341)
Q Consensus 48 ~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~ 125 (341)
+.+|..+++.+-+.+.++-..+...++ ...+.+|+.+...++.......+.+.|++|.+-....+-.+...+-+++++
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 445778888887777776654443333 234566889999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhHHHHHHHHHhhHHHhhcCCCC---CCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhH
Q 019439 126 WLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGG---DGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK--KDRVEVVC 200 (341)
Q Consensus 126 ~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~---~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~ 200 (341)
.++.|+|.+..+.+...+..+|+.+....++.+ +....+...|+.+....-++.++.+..++++.++ .++..+++
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 999999999999999999999999988765533 2344567899999999999999999999999876 57788999
Q ss_pred HhHHHHHHHHHHHHHhcccccccc-----ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHH
Q 019439 201 MIGVYGLLVSAVQLSILELKSLES-----VEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVF 275 (341)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~ 275 (341)
+..++.++..... .+.++...+. .+...+.-+.....+ ....+.+.++.+++.++.+...++.+.-.+++++
T Consensus 208 ~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~--gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~l 284 (327)
T KOG1581|consen 208 GVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTC--GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIML 284 (327)
T ss_pred HHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHh--hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHH
Confidence 9999999998644 3333322211 222333333444443 3333677788999999999999999999999999
Q ss_pred HHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 276 RICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 276 ~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
+.+++|++++..|++|..+++.|+.+-.+-+++
T Consensus 285 S~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 285 SCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999998876655544
No 29
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.3e-13 Score=110.87 Aligned_cols=230 Identities=12% Similarity=0.120 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC
Q 019439 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~ 156 (341)
.+.+.+.+...+.-.......-+.|++|.|-....+-.+..|+-+++++.++.+++.+|++...++++++|+.+..+.++
T Consensus 81 D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 81 DNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred cCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 34456667777766666688899999999999999999999999999999999999999999999999999999998755
Q ss_pred C-CCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcC--CchhhhHHhHHHHHHHHHHHHHhccccccccc---cccch
Q 019439 157 G-GDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKK--DRVEVVCMIGVYGLLVSAVQLSILELKSLESV---EWSTN 230 (341)
Q Consensus 157 ~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 230 (341)
. ....+.....|-++.+++-...+.....+++..+.+ ....++++..+++.+...... .+.++.++-+ .-.+.
T Consensus 161 Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~-lfTGElweF~yF~~RhP~ 239 (337)
T KOG1580|consen 161 KVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGL-LFTGELWEFFYFVQRHPY 239 (337)
T ss_pred ccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhh-eehhhHHHHHHHHHhccH
Confidence 2 112344566899999999999999999998886654 456678888888888876333 3332221110 01122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 231 ILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
.+.=+..++++++..+.+.+......++..-+++..+.-.++++.++++++.+++.+||+|.++++.+...=....+
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 22222334445666678888899999999999999999999999999999999999999999999988776544433
No 30
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=6.3e-12 Score=107.36 Aligned_cols=244 Identities=14% Similarity=0.085 Sum_probs=170.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh-hchHHHHHHHH
Q 019439 50 APVTQSAFAYFSLALVYGGVLLYRRQRLR---VAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLT 125 (341)
Q Consensus 50 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~ll~ 125 (341)
+|....+.-.+.+.++-+.....+++... ..+..-++.|++...++...+.|+++.++|.+.++. .++.+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 46666654444444443343444444332 557778889999999999999999999999999886 77777799999
Q ss_pred HHHhhcccchhhH----HHHHHHHHhhHHHhhcCCCCC--CCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 019439 126 WLFLGTRYSLWQL----LGAALCVLGLGLVLLSDAGGD--GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVV 199 (341)
Q Consensus 126 ~l~l~e~~~~~~~----ig~~l~~~Gv~l~~~~~~~~~--~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~ 199 (341)
.++++|.-+..++ +++++.++|+.+....+..++ +...+...|+...+.+.+.|..|.+..|. .+.++....
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~ 168 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAF 168 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhH
Confidence 9999998886665 488899999999988776543 12445668999999999999999999776 457777766
Q ss_pred HHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHH
Q 019439 200 CMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICF 279 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~ 279 (341)
+-+.+.-.+...+.....+....++..|......+.-+++ ..++..+.+..+.+++=....+.++++.+.|+++
T Consensus 169 lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ig------nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~i 242 (269)
T PF06800_consen 169 LPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIG------NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFI 242 (269)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHH------HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheE
Confidence 6554444333332222222222222233333322222332 4556667778777777677777889999999999
Q ss_pred hccccchh----hhhHHhhheeeeee
Q 019439 280 YHQKVDWL----YFLAFGIVVIGLII 301 (341)
Q Consensus 280 ~~e~~~~~----~~~G~~li~~g~~l 301 (341)
+||+=+.. .++|.++++.|.++
T Consensus 243 l~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 243 LKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred EEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99987764 55688888887664
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.46 E-value=6.7e-13 Score=97.91 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHH
Q 019439 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR------LRVAWYWYLLLGFVDVQGNF 96 (341)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~ 96 (341)
+++++..|+..+....+.+.-.+ ..+|...++.|.......+..++...++. .++.|...++.|+.+.....
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 55666677777767777666543 67899999999988888877777655432 35567777788877777788
Q ss_pred HHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 97 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
+||+|++..+++.+.++..++|+++++++++++|||++..+|+|++++.+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999998764
No 32
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=1.2e-11 Score=91.30 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=108.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcccc-ccccccccchHHHHHHHHHHHHHHHH
Q 019439 168 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELK-SLESVEWSTNILLGFAGYAASSFMFY 246 (341)
Q Consensus 168 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (341)
...+++++++++++..++.|.-.++.||...+....+....+........... .....+.+.+..+.+-|+ ++....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGl--a~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGL--AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHH--HHHHHH
Confidence 46899999999999999999999999999988888888777775444443332 222234455665555554 444557
Q ss_pred HHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 247 TLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
.+|+++++...++.+....-++|+++++++++++||+++..+++|+++|++|.++..+
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999998888887777789999999999999999999999999999999998764
No 33
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.36 E-value=1.5e-11 Score=99.63 Aligned_cols=272 Identities=13% Similarity=0.093 Sum_probs=197.9
Q ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh
Q 019439 37 SFTSSLIADL-GVDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD 114 (341)
Q Consensus 37 ~~~~~~l~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~ 114 (341)
....++.... |+.-.+.+.+.+.+.+.+-+..+...+... +.++.+.+...+++..+..+.-..+++|.++...++..
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK 101 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK 101 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence 3444554332 444466667777666655555543333222 23445566777788877788889999999999999999
Q ss_pred hchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCC-CCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhc-
Q 019439 115 CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD-GGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKK- 192 (341)
Q Consensus 115 ~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~-~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~- 192 (341)
+++.+..+....+++|.|.+-....+.++.++.-+...++|.... ........|+++...-++.-+.+....|+..+-
T Consensus 102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt 181 (309)
T COG5070 102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT 181 (309)
T ss_pred cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998888887665221 112345679999999999999999998887543
Q ss_pred -CCchhhhHHhHHHHHHHHHHHHHhcccccccc--ccccchH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhh
Q 019439 193 -KDRVEVVCMIGVYGLLVSAVQLSILELKSLES--VEWSTNI--LLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLT 267 (341)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 267 (341)
......++|..+.+..+.+...++.|..+... -+.+... ++.+-|+ ++++.-.+-.+..+-.+++..++++.+
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl--~svgiSy~saWcvrVtSSTtySMvGAL 259 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL--CSVGISYCSAWCVRVTSSTTYSMVGAL 259 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH--HHhhhhhccceeEeehhhhHHHHHHHh
Confidence 45567889999999988876666665433221 1222222 3333333 333333455678888999999999998
Q ss_pred hHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 268 ADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 268 ~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
.-.-..+-|.++|+|+.+...+....+=..+..+|..++.+++
T Consensus 260 NKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 260 NKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred hhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998888887777777665443
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.31 E-value=4.8e-12 Score=97.69 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019439 177 IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLS 256 (341)
Q Consensus 177 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (341)
++|+.+.+..|+..++.|+....++....+.+ ..+.....+..+....+...+....+.+.. +....+.++.+++++.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLL-GTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhcc-ceehHHHHHHHHHHhc
Confidence 46889999999999999999999999999887 543444444333344444555555666665 5566689999999999
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeee
Q 019439 257 GATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 302 (341)
Q Consensus 257 ~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~ 302 (341)
++..++....++|+++.+++++++||+++..+++|+++++.|+++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=97.31 Aligned_cols=218 Identities=18% Similarity=0.262 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCc
Q 019439 85 LLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSR 164 (341)
Q Consensus 85 ~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~ 164 (341)
....++....++.|..+++..+++.++.+..+.-.|+.+++++++|+|+...++++.++++.|++++.+.|+ ....
T Consensus 57 aPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN----~~a~ 132 (290)
T KOG4314|consen 57 APFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN----EHAD 132 (290)
T ss_pred cceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc----hhhh
Confidence 334456666799999999999999999999999999999999999999999999999999999999997764 4556
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHH---HHHHHHHH---hccccccccccccchHHHHHHHH
Q 019439 165 PLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGL---LVSAVQLS---ILELKSLESVEWSTNILLGFAGY 238 (341)
Q Consensus 165 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 238 (341)
.+.|+.+++.++...|+|.+..|+...+.+--...-++...|. .+...+.. +...+.+..+...+|. ...|.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG--~l~G~ 210 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWG--CLCGA 210 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCch--hhhhH
Confidence 7899999999999999999999999877655443333333332 22222222 2222222222112222 22244
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 239 AASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
..-...++.+.+.++....|...++-+.....--..++.++-+-..+...+.|..+|.+|.++....+++
T Consensus 211 A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 211 AGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 4345556677788888888988888877776777888877655577889999999999999988765543
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.28 E-value=8.4e-11 Score=89.01 Aligned_cols=100 Identities=27% Similarity=0.459 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHH-HHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHH
Q 019439 56 AFAYFSLALVYGGVLLYRRQR-------LRVAWYWYLLLGFVDV-QGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL 127 (341)
Q Consensus 56 ~~r~~~~~l~l~~~~~~~~~~-------~~~~~~~~~~~g~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l 127 (341)
.+|+..+.+++..+...+++. .++++...+..|.++. ..+.+++.|+++.+ +.++++.+++|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 468888888877766654321 1233556667788887 44889999999999 58889999999999999999
Q ss_pred HhhcccchhhHHHHHHHHHhhHHHhhcCC
Q 019439 128 FLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 128 ~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~ 156 (341)
++|||++++++.++.++++|+.++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999998764
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.25 E-value=5.1e-11 Score=91.87 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHH-HHHHHHHHHhhhccc
Q 019439 33 LALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR-----QRLRVAWYWYLLLGFVD-VQGNFLVNKAYQFSS 106 (341)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~ 106 (341)
++......+...+ ..+|...+++|+..+.+ +++.....+ +..++++......|.+. ...+.+++.++++.+
T Consensus 3 ~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 3 WAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 3445555565554 37899999999999886 443333222 22344566677777775 445889999999999
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 107 ~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
++.++++.++.|+++.+++++++||++++.+++|+++++.|+.++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875
No 38
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.9e-12 Score=106.85 Aligned_cols=256 Identities=15% Similarity=0.185 Sum_probs=177.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhc
Q 019439 48 VDAPVTQSAFAYFSLALVYGGVLLYRR-----------QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCC 116 (341)
Q Consensus 48 ~~~p~~~~~~r~~~~~l~l~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~ 116 (341)
-..|..+++.+.+....+...+....+ +..-...+....+.+.......+-+++++|.+++...+-+++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 345899999888777665554433211 111112345555666666666678999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 019439 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKD-- 194 (341)
Q Consensus 117 ~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-- 194 (341)
..+|+++++++++|+|-+.....+..++++|-.+=...+. ..+...+.|.++++.|+++-|+..+..||.....+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~---~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~ 214 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG---STGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDC 214 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecccccc---ccCccchhhhHHHHHHHHHHHHHHHhhheecccccCe
Confidence 9999999999999999999999999988888554432221 23556779999999999999999999998755432
Q ss_pred chhhhHHhHHHHHHHHHHHHHhccc-ccccc---c-cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhH
Q 019439 195 RVEVVCMIGVYGLLVSAVQLSILEL-KSLES---V-EWSTNILLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTAD 269 (341)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~p 269 (341)
-....++..+.+.+..++...+.+. +.... . +++.|..+.+-|. ..+.-.....+-+|-++|.+-++...-.-
T Consensus 215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl--fgF~mgyvTg~QIK~TSplThnISgTAka 292 (347)
T KOG1442|consen 215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL--FGFAMGYVTGWQIKVTSPLTHNISGTAKA 292 (347)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH--HHHHhhheeeEEEEecccceeeecHhHHH
Confidence 2445678888887777543333322 22222 1 2223332222222 21111122222344577888778777777
Q ss_pred HHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 270 MWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 270 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
..-.+++..+++|.-+..-|.|-.+++.|...|.+.+++
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~ 331 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH 331 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence 888899999999999999999999999999999876543
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.15 E-value=8.3e-10 Score=88.44 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=109.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhc-------CCchhhhHHhHHHHHHHHHHHHHhccccccccc-------cc--cchH
Q 019439 168 GDVLVIAGTIFFATSNVGEEFFVKK-------KDRVEVVCMIGVYGLLVSAVQLSILELKSLESV-------EW--STNI 231 (341)
Q Consensus 168 G~~~~l~a~~~~a~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 231 (341)
|.++++.+.++.++++++.|+..++ .++.+...+....+.++..+...+.|....... +. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999998655 477888899999999998877777665442211 11 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 232 LLGFAGYAASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
....+..+...+..+......+++.++...++...+..+...+++++++||+++..+++|.++.+.|.++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3333333445556678888899999999999999999999999999999999999999999999999999875
No 40
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.1e-10 Score=97.62 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHhhh
Q 019439 38 FTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL-YRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQF-SSITSVTLLDC 115 (341)
Q Consensus 38 ~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~~~~~~~~l~~ 115 (341)
.+.-.+.++...+--.+++.+|++.+.--++..- ....+++.+.+.+...-.+.+..+.+-++++++ ++...-.++++
T Consensus 20 v~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRs 99 (330)
T KOG1583|consen 20 VFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRS 99 (330)
T ss_pred HHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEec
Confidence 4444555554444567788787666554333321 111224444555555556666668899999998 77777888999
Q ss_pred chHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCC---------C----CCCcchHHhHHHHHHHHHHHHH
Q 019439 116 CTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGD---------G----GGSRPLLGDVLVIAGTIFFATS 182 (341)
Q Consensus 116 ~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~---------~----~~~~~~~G~~~~l~a~~~~a~~ 182 (341)
-+++.+++++++++|+|.+.+|+.++++..+|+++.+..+..+- + .......|+.+...+-+.-|..
T Consensus 100 gsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred CcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886544211 0 0111247888888899999999
Q ss_pred HHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHH-h-------cccc--ccccccccch-HHHHHHHHHHHHHHHHHHH
Q 019439 183 NVGEEFFVKK--KDRVEVVCMIGVYGLLVSAVQLS-I-------LELK--SLESVEWSTN-ILLGFAGYAASSFMFYTLA 249 (341)
Q Consensus 183 ~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 249 (341)
.++++..-++ .++.+.++|.-.......+...- + +..+ ..+..+..-. .+..+++ .....|.|.
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~---n~L~Qy~Ci 256 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF---NVLTQYFCI 256 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH---HHHHHHHHH
Confidence 9999988777 46788888877766555531100 0 0000 0111111111 1111111 222334443
Q ss_pred HH---HHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 250 PF---VLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 250 ~~---~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
.. .-...++..++++..+.-.++.+++++.|+.+.+++.|+|.+++..|.+++.....
T Consensus 257 kgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 257 KGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred HhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 32 22234555667777788999999999999999999999999999999999875433
No 41
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.13 E-value=2.6e-09 Score=93.37 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHH-
Q 019439 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR---LRVAWYWYLLLGFVDVQG- 94 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~- 94 (341)
..+|..+++..+++++......+...++...++.....+++..+.+++.+......+. ....+...+..+++....
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3568888888999888888888887653333345566578888888888776654322 233455567677776655
Q ss_pred HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhh
Q 019439 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGL 148 (341)
Q Consensus 95 ~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv 148 (341)
..++++++++.+++.++.+.++.|++++++++++++|+++..+++|..+.+.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 779999999999999999999999999999999999999999999999999986
No 42
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.04 E-value=5.6e-09 Score=89.07 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=121.7
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC-------------------CC--CCCCCcc
Q 019439 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA-------------------GG--DGGGSRP 165 (341)
Q Consensus 107 ~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~-------------------~~--~~~~~~~ 165 (341)
+.......+..++++++.+....+||.+..++++.++...|+......+. .. .....+.
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~ 83 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNP 83 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccH
Confidence 33445566777888888888888888888888888888777764322211 00 0011345
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhcCCchh--hhHHhHHHHHHHHHHHHHhcccccccc----ccccchHHHHHHHHH
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFFVKKKDRVE--VVCMIGVYGLLVSAVQLSILELKSLES----VEWSTNILLGFAGYA 239 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 239 (341)
..|....+.++.+-+...++.++..++.+... ........+.+.........+...... ..+....+... .
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 160 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG---L 160 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH---H
Confidence 67777788888888899999998866543221 112222222222111111111111111 11122222111 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeee
Q 019439 240 ASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 302 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~ 302 (341)
.......+....+++.++...++...++++++.+++++++||+++..+++|..+++.|+.+|
T Consensus 161 -~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 -LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred -HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22223567788999999999999999999999999999999999999999999999998875
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.03 E-value=2.7e-08 Score=88.02 Aligned_cols=212 Identities=14% Similarity=0.182 Sum_probs=123.9
Q ss_pred HHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcch-------
Q 019439 94 GNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPL------- 166 (341)
Q Consensus 94 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~------- 166 (341)
+..+.+.|+.+.|.+..+++..+..++.++++..++|||++++.+.|..++++|..++......+++..+...
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~ 142 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQ 142 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcC
Confidence 3678889999999999999999999999999999999999999999999999999987755443221111000
Q ss_pred HHh-HHH-HHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH----HHhccc-cccccccccchHHHHHHHHH
Q 019439 167 LGD-VLV-IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQ----LSILEL-KSLESVEWSTNILLGFAGYA 239 (341)
Q Consensus 167 ~G~-~~~-l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (341)
.+. .+. +...+...+.....+|. .+.+...+.....+.+....+.. ..+.+. .....+ ..+..+...+...
T Consensus 143 ~~fl~y~~~~~~~~~~L~~~~~~r~-g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f-~~~~~y~l~~~~v 220 (300)
T PF05653_consen 143 PGFLVYFILVLVLILILIFFIKPRY-GRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQF-TYPLTYLLLLVLV 220 (300)
T ss_pred cceehhHHHHHHHHHHHHHhhcchh-cccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhh-hhhHHHHHHHHHH
Confidence 111 111 11111111222222221 11222222222222232222110 011110 111111 1122233444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-HHhhhhhhHHHHHHHHHHHhcccc--ch----hhhhHHhhheeeeeeeecccc
Q 019439 240 ASSFMFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYHQKV--DW----LYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~l~~~~~~~e~~--~~----~~~~G~~li~~g~~l~~~~~~ 307 (341)
.+........++++++.+++. .++....-...+++-|.++++|.. +. ....|..+++.|+.+.+..++
T Consensus 221 ~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 221 VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 466666777888999977654 444444555788888999999854 33 556788899999999875444
No 44
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.96 E-value=7.3e-07 Score=79.63 Aligned_cols=226 Identities=13% Similarity=0.088 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhccc-------chhhHHHHHHHHHhh
Q 019439 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRY-------SLWQLLGAALCVLGL 148 (341)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~-------~~~~~ig~~l~~~Gv 148 (341)
....+..-++.|++...++.+++.++++.+++.+.++ ..++.+...++..++++|-. .....+|+++.++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 3445666788899999999999999999999999766 68899999999999998754 244678999999999
Q ss_pred HHHhh----cCCCCC---CCCCcchHHhHHHHHHHHHHHHHH-------HHHHHHh-hcCCchhhhHHhHH---HHHHHH
Q 019439 149 GLVLL----SDAGGD---GGGSRPLLGDVLVIAGTIFFATSN-------VGEEFFV-KKKDRVEVVCMIGV---YGLLVS 210 (341)
Q Consensus 149 ~l~~~----~~~~~~---~~~~~~~~G~~~~l~a~~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~~---~~~~~~ 210 (341)
.+... .+..++ +.+.+...|+.+++.+++.+++|+ ...+... ...++.....-+.. .+.++.
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 99988 433211 133456799999999999999999 4443321 12344332222222 333332
Q ss_pred HHHHHhc---ccccc---ccc--c----ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHH---hhhhhhHHHHHH
Q 019439 211 AVQLSIL---ELKSL---ESV--E----WSTNILLGFAGYAASSFMFYTLAPFVLKLSGAT-MFN---LSLLTADMWAVV 274 (341)
Q Consensus 211 ~~~~~~~---~~~~~---~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~---~~~~~~pv~~~l 274 (341)
-...... ..++. .+. + +.......+.|+ .-...+..+..+-++.+.. ... +.+....+++.+
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~--~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV--MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 2111111 11121 111 1 111111122222 1222233444444444322 222 443556689999
Q ss_pred HHHHHhccccc------hhhhhHHhhheeeeeeeecc
Q 019439 275 FRICFYHQKVD------WLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 275 ~~~~~~~e~~~------~~~~~G~~li~~g~~l~~~~ 305 (341)
+|+ ++||.=+ ...++|.++++.|.++....
T Consensus 307 wGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 307 WGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 998 4899866 57788999999988876543
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.89 E-value=2.3e-08 Score=88.41 Aligned_cols=131 Identities=9% Similarity=0.098 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcc--ccccccccccchHHHHHHHHHHHHHHHH
Q 019439 169 DVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILE--LKSLESVEWSTNILLGFAGYAASSFMFY 246 (341)
Q Consensus 169 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (341)
..+.+++++++|..++.+|+..++.++. ..+....+++... +..... ....+..+...+.... .+.. .....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLT-PYGLWYLAQVGWSRLPATFWLLLA-ISAV-ANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHH-HHHHHhcccCCCCCcchhhHHHHH-HHHH-HHHHHH
Confidence 4678999999999999999887665553 3444444444443 322221 2222222222222222 2222 444556
Q ss_pred HHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 247 TLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
.++..++++.++..++....+.|+++.+++++++||+++..+++|.++++.|+++...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7888899999999999999999999999999999999999999999999999987654
No 46
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.88 E-value=2.9e-08 Score=88.50 Aligned_cols=137 Identities=11% Similarity=0.103 Sum_probs=104.7
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccc-cccc-cc-cccchHHHHHHHHHH
Q 019439 164 RPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLE-SV-EWSTNILLGFAGYAA 240 (341)
Q Consensus 164 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~ 240 (341)
+...|..+.++++++|+...+..|.. .+.+|.+..++....+.++..+......+ .... .. ++..... ...+..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAV- 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHH-
Confidence 45689999999999999999999765 67899999999999988766433322211 1110 01 1222221 223333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
.....+.++++++++.++..+++...+.|++..+++++++||+++..+++|.++.++|+++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 444557889999999999999999999999999999999999999999999999999988764
No 47
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.87 E-value=3.4e-08 Score=86.17 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=101.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcccc-----ccccccccchH-HHHHHHHHH
Q 019439 167 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELK-----SLESVEWSTNI-LLGFAGYAA 240 (341)
Q Consensus 167 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~ 240 (341)
+|..+.++++++|+...+..|. ..+.+|.+..++.++.+.++..+........ ..+..+..... .....+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL-- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH--
Confidence 4788999999999999999998 4679999999999998887764333332211 11111112211 2222232
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
.....+.++..++++.++..+++...+.|+++.+++++++||+++..+++|..+.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 244456888999999999999999999999999999999999999999999999999988653
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.86 E-value=2.6e-07 Score=82.26 Aligned_cols=133 Identities=16% Similarity=0.011 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHH-H
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR---LRVAWYWYLLLGFVDVQG-N 95 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~-~ 95 (341)
..|.+++...+++++......+...+ ..+|....... .+..+++.++....... ....+...+..|++.... +
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA--EHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 45788888888887777777776643 34555554433 44555555555433221 122233456777777777 6
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
.++++++++.+++.++++.++.|+++.++++++++|+++..+++|.++.+.|++......
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999999997654
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.82 E-value=1.9e-07 Score=83.15 Aligned_cols=132 Identities=15% Similarity=-0.029 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-----RLRVAWYWYLLLGFVDVQG 94 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~ 94 (341)
..|.+++...+++++......+...+ .++...+.+++....+++.++...... .....|...+..+++....
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL---PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35777777777777777666655432 234445566777777766665543221 1234566677777776666
Q ss_pred -HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 95 -NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 95 -~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
..++++++++.+++.++.+.++.|++++++++++++|+++..+++|.++.+.|+.+....
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999999999999999999999999999999998764
No 50
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.79 E-value=2.6e-07 Score=84.02 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-hhhh-------hhHHHHHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQR-------LRVAWYWYLLLGFVD 91 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~-------~~~~~~~~~~~g~~~ 91 (341)
..|.++.+..+++++......+...+ ...++...+++...+..+.+.+.... .... ........+..++..
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 44777777777777776666655433 23334455555554444443333222 1110 011112233334443
Q ss_pred HHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC
Q 019439 92 VQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 92 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~ 156 (341)
.....++++++++.+++.+++..++.|++++++++++++|++++.+++|.++.+.|+.+....+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 33467899999999999999999999999999999999999999999999999999999886543
No 51
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.4e-07 Score=81.40 Aligned_cols=220 Identities=14% Similarity=0.160 Sum_probs=129.8
Q ss_pred HHHHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCc-
Q 019439 87 LGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSR- 164 (341)
Q Consensus 87 ~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~- 164 (341)
.|.+.+.. ...-|.|+.+.|.+..+++..++.+..++++..++|||++....+|.+++++|-.++....+.+++....
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~ 148 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVE 148 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHH
Confidence 35554444 8888899999999999999999999999999999999999999999999999999998766543211110
Q ss_pred ------chHHhHHHHHHH-HHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHH-------HHHh-ccccccccccccc
Q 019439 165 ------PLLGDVLVIAGT-IFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAV-------QLSI-LELKSLESVEWST 229 (341)
Q Consensus 165 ------~~~G~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~ 229 (341)
...+.+.-..-. +...+-....+ +++.....+.|..+.+.+-++- -..+ .......+.. .+
T Consensus 149 el~~~~~~~~Fliy~~~iil~~~il~~~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~-~~ 224 (335)
T KOG2922|consen 149 EVWELATEPGFLVYVIIIILIVLILIFFYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF-YP 224 (335)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHheeec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc-cH
Confidence 011111111111 11111111111 1222222333333333332210 0000 0001111111 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhccccch------hhhhHHhhheeeeeee
Q 019439 230 NILLGFAGYAASSFMFYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDW------LYFLAFGIVVIGLIIY 302 (341)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~------~~~~G~~li~~g~~l~ 302 (341)
..+...+.+..+........+.+++..++. +.++....-..++++-+.++|+|--.. ....|...++.|+.+.
T Consensus 225 ~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL 304 (335)
T KOG2922|consen 225 LTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLL 304 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEe
Confidence 233333444445555556667888886665 445555556677888899999986432 6778999999999999
Q ss_pred eccccCCC
Q 019439 303 STTEKDLN 310 (341)
Q Consensus 303 ~~~~~~~~ 310 (341)
...++.+.
T Consensus 305 ~~~kd~~~ 312 (335)
T KOG2922|consen 305 HRTKDMEI 312 (335)
T ss_pred eeeccccc
Confidence 76554443
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.74 E-value=3.5e-07 Score=70.26 Aligned_cols=122 Identities=7% Similarity=0.037 Sum_probs=86.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHH
Q 019439 167 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFY 246 (341)
Q Consensus 167 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (341)
.|+++.+.+.++-+..+++.|+-.++.+..+.... . ... +.. . .......+.+++ +...++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~----~-~~~-~~~-~-----------~~p~~~i~lgl~-~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD----F-IAA-LLA-F-----------GLALRAVLLGLA-GYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH----H-HHH-HHH-H-----------hccHHHHHHHHH-HHHHHH
Confidence 36788999999999999999999877654442211 0 001 000 0 111112344555 556668
Q ss_pred HHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHH--HhccccchhhhhHHhhheeeeeeeecccc
Q 019439 247 TLAPFVLKLSGATMFNLSLLTADMWAVVFRIC--FYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
.+|..++++.+...+.......++...+.++. ++||+++..+++|+++|++|+++.+++++
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999888887777777777777774 89999999999999999999999875443
No 53
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.70 E-value=6.1e-10 Score=91.85 Aligned_cols=246 Identities=16% Similarity=0.130 Sum_probs=154.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhh-hchHHHHHHHH
Q 019439 48 VDAPVTQSAFAYFSLALVYGGVLLYRRQR-LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLT 125 (341)
Q Consensus 48 ~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~ll~ 125 (341)
..+|..++..-.+.+.++.+...+...+. ..+.+..-++.|.+..+++...+.|+++.+++.+.++. .++.+-+.+++
T Consensus 25 GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~g 104 (288)
T COG4975 25 GGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFG 104 (288)
T ss_pred CCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeee
Confidence 34577776544433333333333332222 23445666777888888899999999999999999885 66777799999
Q ss_pred HHHhhcccchhhH----HHHHHHHHhhHHHhhcCCCC--CCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhh
Q 019439 126 WLFLGTRYSLWQL----LGAALCVLGLGLVLLSDAGG--DGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVV 199 (341)
Q Consensus 126 ~l~l~e~~~~~~~----ig~~l~~~Gv~l~~~~~~~~--~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~ 199 (341)
.+.++|..+..+. +++++.++|+.+....+.++ ++..++...|....+.+.+.|-.|.+..+... .+.....
T Consensus 105 V~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~g~sai 182 (288)
T COG4975 105 VFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VDGLSAI 182 (288)
T ss_pred EEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecccc--ccchhhh
Confidence 9999999987765 56778888988888776533 24445567899999999999999999887753 4444443
Q ss_pred HHhHHHHHHHHHHHHHhccc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhhhhHHHHHHHHH
Q 019439 200 CMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAASSFMFYTLAPFVLKLSG-ATMFNLSLLTADMWAVVFRI 277 (341)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~pv~~~l~~~ 277 (341)
.-+.....+..+ ....... ....+..|........-+.+ +..+..+-+..+ |+-.++... ..+++.+-|+
T Consensus 183 LPqAiGMv~~al-i~~~~~~~~~~~K~t~~nii~G~~Wa~G------Nl~ml~a~~~~GvAt~FSlSQl-gViisTiGGI 254 (288)
T COG4975 183 LPQAIGMVIGAL-ILGFFKMEKRFNKYTWLNIIPGLIWAIG------NLFMLLAAQKVGVATSFSLSQL-GVIISTIGGI 254 (288)
T ss_pred hHHHHHHHHHHH-HHhhcccccchHHHHHHHHhhHHHHHhh------HHHHHHhhhhhceeeeeeHhhh-eeeeeecceE
Confidence 333222222221 2212221 12222223232222222222 344445555544 344444444 3478899999
Q ss_pred HHhccccchhh----hhHHhhheeeeeeee
Q 019439 278 CFYHQKVDWLY----FLAFGIVVIGLIIYS 303 (341)
Q Consensus 278 ~~~~e~~~~~~----~~G~~li~~g~~l~~ 303 (341)
++++|+=|..+ ++|.++++.|.++..
T Consensus 255 l~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 255 LFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred EEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 99999988855 457788877766543
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.69 E-value=1.4e-06 Score=77.76 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHH-Hhh---------hhhhHHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLG-VDAPVTQSAFAYFSLALVYGGVLL-YRR---------QRLRVAWYWYLLLG 88 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~-~~~p~~~~~~r~~~~~l~l~~~~~-~~~---------~~~~~~~~~~~~~g 88 (341)
+.|.++++..+++++......+...++. ..+......+..+...+.+..... ... ......+...+..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4688888888888888888887764432 222233333333333332222211 111 11234466677778
Q ss_pred HHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 89 FVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
++.... ..+++.++++.+++.++.+..+.|++..++++++++|+++..+++|.++.++|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 777776 7799999999999999999999999999999999999999999999999999999887653
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.69 E-value=8e-07 Score=79.19 Aligned_cols=130 Identities=19% Similarity=0.009 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ----RLRVAWYWYLLLGFVDVQGN 95 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~ 95 (341)
..|.++++..+++++......+...+ ..+|..... ....+.+.+....... .....+...+..|+.....+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHH
Confidence 34777888888888877777777643 234544322 2222333322222211 12234555555665444458
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
.++++++++.+++.++.+.++.|++..++++++++|+++..+++|.++++.|+.+....
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999888754
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.62 E-value=1.1e-06 Score=78.70 Aligned_cols=136 Identities=14% Similarity=0.079 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-h-hhH---------H---HHH-H
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ-R-LRV---------A---WYW-Y 84 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-~-~~~---------~---~~~-~ 84 (341)
..|.+++...+++++......+...+....+|...+.+....+.+.+.|....... . ... . ... .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 44777777777776666666665543335678888888888888887777653221 1 010 0 011 1
Q ss_pred HHHHHHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 85 ~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
+..+...... +.+++.++++++++.+++...+.|+++.++++++++|+++..+++|.++++.|+.+....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 2222212222 4566789999999999999999999999999999999999999999999999999988654
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.60 E-value=1.2e-06 Score=77.76 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 019439 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYF----SLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG 94 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (341)
..||++++++.+++.+......+.. ..+|...++.... .+.+++.++ .+.++...+..+..++.|++....
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHH
Confidence 3679999999988888887777754 2566666444443 333334333 111222233444455688887666
Q ss_pred HHHHHHhhh-ccchhHHHHhhhchHHHHHHHHHHHhhcccchhhH----HHHHHHHHhhHHHhh
Q 019439 95 NFLVNKAYQ-FSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQL----LGAALCVLGLGLVLL 153 (341)
Q Consensus 95 ~~~~~~al~-~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~----ig~~l~~~Gv~l~~~ 153 (341)
+.+|+.+.+ +.+++.+.++.+..|+...+.+++++||+.+++++ +|.++.+.|+.++..
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 889999999 99999999999999999999999999999999999 999999999988754
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.58 E-value=5.2e-07 Score=67.61 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=59.6
Q ss_pred HHHHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhh
Q 019439 87 LGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 87 ~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
.+++.... .+++..+++..|.+.+..+.++.++++.+++++++|||+++.+++|+.++++|+.++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33344444 77899999999999999999999999999999999999999999999999999988753
No 59
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.58 E-value=4.7e-06 Score=66.55 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHHhh-hh---------------hhHH
Q 019439 22 LLFLGQLVSFTLALMSFTSSLIADL-----GVDAPVTQSAFAYFSLALVYGGVLLYRR-QR---------------LRVA 80 (341)
Q Consensus 22 g~~~~~~~al~~~~~~~~~~~l~~~-----~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~---------------~~~~ 80 (341)
|.+++....++.+.-....+...++ ...++..+.......+.+++.+...... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 3455666666677777777766554 4677888888888888888777655321 10 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHH
Q 019439 81 WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (341)
Q Consensus 81 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l 150 (341)
+...+..|++....+...+..++++++...+++.....+.+.+++.++++|+++..+++|++++++|..+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 4556667777777799999999999999999999999999999999999999999999999999999875
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.41 E-value=1.9e-05 Score=69.85 Aligned_cols=133 Identities=29% Similarity=0.297 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHH-H
Q 019439 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSA-FAYFSLALVYGGVLLYRR--QRLRVAWYWYLLLGFVDVQ-G 94 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~-~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~ 94 (341)
...|.+++...+++++......+... ..++..... +.+........+...... ......+......|++... .
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 45688888888888876666666554 334444444 333322222223222222 2344567777888888885 5
Q ss_pred HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 95 ~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
+.+++++++..+++..+++..+.|++..++++++++|+++..+++|..+.+.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999999988754
No 61
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.40 E-value=2.4e-05 Score=71.41 Aligned_cols=135 Identities=14% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHHHHHHh-h---hhhh--------H-H
Q 019439 19 TLYLLFLGQLVSFTLALMSFTSSLIADLG-----VDAPVTQSAFAYFSLALVYGGVLLYR-R---QRLR--------V-A 80 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~~~~~~~~l~~~~-----~~~p~~~~~~r~~~~~l~l~~~~~~~-~---~~~~--------~-~ 80 (341)
.+.|.+++.+.+++++.-....+...++. ..++.....+....+.++++|+.... . .... . .
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 35688888888888888888887765432 24455555555667777777765522 1 1100 0 0
Q ss_pred HHHHHH----HHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhh
Q 019439 81 WYWYLL----LGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 81 ~~~~~~----~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
+...+. .++.....+...+.+++.+++..+++...+.|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 111111 1222222233445799999999999999999999999999999999999999999999999987653
No 62
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.33 E-value=3.4e-06 Score=63.67 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
.....+.++..+.++.++ .+.....+.|+++.+++.++++|+++..+++|.+++++|+++....+..
T Consensus 44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 333457888999999885 6668888899999999999999999999999999999999998765543
No 63
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.28 E-value=1.3e-05 Score=59.99 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
+...++.++..++++.+..++.....+.++++.++|++++||+++..+++|..++++|+++..
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 444457888999999888877776779999999999999999999999999999999988754
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=68.96 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=106.6
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccc-cccccccccchHHHHHHHHHHHH
Q 019439 164 RPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILEL-KSLESVEWSTNILLGFAGYAASS 242 (341)
Q Consensus 164 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (341)
+...|+++++.|-+.|+..-.+.|-. +..++.++..+..+++.++.......... .+..+.--++.....+.....-.
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34579999999999999999988665 78899999999999998888755444332 23222111222222222222234
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 243 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
......+.++.++..+..+++-+++.|++.+++|.+++||+++..|++...+..+|+.....
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999887654
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.22 E-value=1.2e-05 Score=61.85 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHH--HhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 84 YLLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWL--FLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 84 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l--~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
++..|+..... ..++.++++..|++.+.++.+..++++.+.++. ++||++++.+++|++++++|+.++...+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 45667666666 779999999999999999999999888888885 7999999999999999999999987643
No 66
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00036 Score=58.54 Aligned_cols=131 Identities=15% Similarity=-0.021 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-h--HHHHHHHHHHHHHHHH-HH
Q 019439 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-R--VAWYWYLLLGFVDVQG-NF 96 (341)
Q Consensus 21 ~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-~--~~~~~~~~~g~~~~~~-~~ 96 (341)
.|..+++....||++..+..+-..+ ..+--.-+..-+..++++.+|+-..+-... . .-...-+..|++.... +.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 4666667777777776666665543 333344455677888988888866443221 1 1123345567777777 56
Q ss_pred HHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhh
Q 019439 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 97 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
+-..++...|..+..++.++.|.+.++.++++++|.++..||.++...+.+..-...
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 889999999999999999999999999999999999999999999988887764443
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.91 E-value=7.1e-05 Score=56.46 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHhh-hchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 88 GFVDVQGNFLVNKAYQFSSITSVTLLD-CCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 88 g~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
-++.....+++..++++.|.+.+..+. ....+.+.+++.++++|++++.+++|+.+.++|+..+-..+
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 334444477999999999999998774 78999999999999999999999999999999999886544
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.89 E-value=0.00012 Score=55.19 Aligned_cols=63 Identities=11% Similarity=0.270 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhhhhHH-HhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 244 MFYTLAPFVLKLSGATMF-NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 244 ~~~~~~~~~~~~~~a~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
.++.++..++++.+..++ ++..-+..+.+.+++++++||++++.+++|+.+|++|++..+...
T Consensus 42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 336777888988665443 333345668889999999999999999999999999999886544
No 69
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.00034 Score=51.04 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 90 VDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
......++...++++.|.+.+..+ ...-.+.+++.++++++|+++..+++++.+.++|++.+-..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 334447789999999999999654 68888899999999999999999999999999999987654
No 70
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.84 E-value=0.00059 Score=61.20 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=89.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhc-CC-chhhhHHhHHHHHHHHHHHHHhccccc--cccccccchHHHHHHHHHHH
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFFVKK-KD-RVEVVCMIGVYGLLVSAVQLSILELKS--LESVEWSTNILLGFAGYAAS 241 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 241 (341)
+.+.+++-.-+++-+..++.+....++ .+ |....+..+..-.++.. +...+.... ........++.-.++ ++.
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~-~~~~~r~~~~~~~~~~~~~~w~y~ll--a~~ 88 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYT-PILLYRRGFKKWLKVLKRPWWKYFLL--ALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHh-hhhhhccccccchhhcchhHHHHHHH--HHH
Confidence 445555555566666666666555443 22 33333333333333332 222232221 111111222222222 335
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccC
Q 019439 242 SFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
-+.++.+...+.++++.+.+.+......++++++++++++|+.++.+++|+.+.++|+.+....+..
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 5666888899999999999999999899999999999999999999999999999999988776543
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.82 E-value=0.00075 Score=50.01 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 89 FVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
+......++...++++.|.+.+..+ .....+.+.+.+.+++||++++.+++++.+.+.|++.+-
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3344447788999999999999755 568889999999999999999999999999999998863
No 72
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.80 E-value=0.00051 Score=51.12 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=57.5
Q ss_pred HHHHHH-HHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 89 FVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 89 ~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
+..... .+++..+++..|.+.+..+ .....+.+.+++++++||++++.+++|+.+.++|++++...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344444 6688999999999999877 56889999999999999999999999999999999998654
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.75 E-value=0.00065 Score=58.62 Aligned_cols=129 Identities=10% Similarity=0.000 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHH
Q 019439 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY-RRQRLRVAWYWYLLLGFVDVQGN 95 (341)
Q Consensus 17 ~~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 95 (341)
+...|+++..++..+.........+. ...+|+...+-......+.-..+... +++..++..++-++.|++...++
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ign 209 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGN 209 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHH
Confidence 34556776644444444433333333 45566666654443333322222222 23333444566688999999999
Q ss_pred HHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHH----HHHHHHHhhH
Q 019439 96 FLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLL----GAALCVLGLG 149 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~i----g~~l~~~Gv~ 149 (341)
.+++.|.+....+.+..+.++.++...+-+.+++||+-+++++. |+++.++|.+
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998888664 4444444443
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.75 E-value=0.00025 Score=52.27 Aligned_cols=64 Identities=20% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhh
Q 019439 90 VDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 90 ~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
+.....++...+++..|.+.+..+ .....+.+.+++.+++||++++.+++++.+.++|++.+..
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 334447788999999999999755 5688999999999999999999999999999999998754
No 75
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.74 E-value=0.0025 Score=56.97 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH--hhh---------hhhHHHHHHHHHHHH
Q 019439 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLY--RRQ---------RLRVAWYWYLLLGFV 90 (341)
Q Consensus 22 g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~~---------~~~~~~~~~~~~g~~ 90 (341)
|+++..+..++-+..+.....+.++...+++...++....+.+.+...... ..+ ..+..+...+..++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 777766666666666666666655555677888887777777766655544 221 112235666777777
Q ss_pred HHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 91 DVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
+..++.+.+...+..++...+++..+.-+++.+++.+++++++++.+|+|+++.+.|..+-...+
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 88887777788899999999999999999999999999999999999999999999999887654
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.74 E-value=0.00029 Score=62.58 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=83.5
Q ss_pred CcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHH
Q 019439 163 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASS 242 (341)
Q Consensus 163 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (341)
.+...|..+++.++++.+....++|+...+.+....-. .....+.--...++......+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------------------~~~~~~~l~~~~W~~G~~~~~--- 61 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------------------GSGGRSYLRRPLWWIGLLLMV--- 61 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------------cchhhHHHhhHHHHHHHHHHh---
Confidence 34678999999999999999999999865543311000 000000000111222221111
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 243 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
....+...++...+++..+....+..++..+++..++||+++..++.|+++++.|..+.....
T Consensus 62 -~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 62 -LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred -cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 223555678888888888888888889999999999999999999999999999988766543
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.65 E-value=0.00021 Score=53.23 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhhhhH-HHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 244 MFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 244 ~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
.++.++..++++.+..+ .++-.-+..+.+.++++++|||++++.+++|+.+|++|+++.+...
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33666778888866543 3333445568889999999999999999999999999999986544
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.55 E-value=0.0022 Score=50.05 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=88.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhHHhHHHHHHHHHHHHHhcccccccccc-ccchHHHHHHHHHHHHHHH
Q 019439 168 GDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILELKSLESVE-WSTNILLGFAGYAASSFMF 245 (341)
Q Consensus 168 G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 245 (341)
..++++.++.+-++...++.+..++.. |....+..+..+.+...+.....+..+.+... .++|. ..-|.. ....
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~--~lGG~l-G~~~- 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWA--YLGGLL-GVFF- 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHH--hccHHH-HHHH-
Confidence 357889999999999999999988865 99988999899988887666665554333221 11111 112221 2222
Q ss_pred HHHHHHHHhhhhhhHHHh-hhhhhHHHHHHHHHH----HhccccchhhhhHHhhheeeeee
Q 019439 246 YTLAPFVLKLSGATMFNL-SLLTADMWAVVFRIC----FYHQKVDWLYFLAFGIVVIGLII 301 (341)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~-~~~~~pv~~~l~~~~----~~~e~~~~~~~~G~~li~~g~~l 301 (341)
-.+.....++.++..... ...-+-+.+.+++.+ .-++++++.+++|.+++++|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344556777777665444 444567788888885 23467899999999999999764
No 79
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.53 E-value=0.057 Score=47.97 Aligned_cols=253 Identities=12% Similarity=0.140 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH-HhhhchHH
Q 019439 51 PVTQSAFAYFSLALVYGGVLLYR----------RQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT-LLDCCTIA 119 (341)
Q Consensus 51 p~~~~~~r~~~~~l~l~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi 119 (341)
.|+..+.-..+..-+..|+...- ++.+........+.|++..++...|-.+++|...+..+ +...+..+
T Consensus 33 sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~ 112 (344)
T PF06379_consen 33 SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAV 112 (344)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHH
Confidence 45555544444444444544321 12334456677889999999999999999999999885 66788888
Q ss_pred HHHHHHHHHhhc-------ccchhhHHHHHHHHHhhHHHhhcCCC------CCCCCCcchHHhHHHHHHHHHHHHHHHHH
Q 019439 120 WAIVLTWLFLGT-------RYSLWQLLGAALCVLGLGLVLLSDAG------GDGGGSRPLLGDVLVIAGTIFFATSNVGE 186 (341)
Q Consensus 120 ~~~ll~~l~l~e-------~~~~~~~ig~~l~~~Gv~l~~~~~~~------~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 186 (341)
+-.++-.++.++ +-....++|++++++|+.+....+.. ++..+.+..+|+++++.+++..|+.++-.
T Consensus 113 ~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 113 FGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred HhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 888887776442 23457889999999999999765431 11223345689999999999999998876
Q ss_pred HHHhh--------cCCchh----hhHHhHHHHHHHHHHHHHhc--ccccc---ccccc-cch-H-HHHHHHHH-HHHHHH
Q 019439 187 EFFVK--------KKDRVE----VVCMIGVYGLLVSAVQLSIL--ELKSL---ESVEW-STN-I-LLGFAGYA-ASSFMF 245 (341)
Q Consensus 187 ~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~-~~~-~-~~~~~~~~-~~~~~~ 245 (341)
+.-.. ..+|.. ........+.+..+...... ..++. .+.+. +.. . ...+.... ..-+.+
T Consensus 193 ~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~q 272 (344)
T PF06379_consen 193 DAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQ 272 (344)
T ss_pred HcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 54311 012211 22233444545554333221 11111 11111 111 1 11111111 122222
Q ss_pred HHHHHHHHhhhhh----hHHHhhhhhhHHHHHHHHHHHhccc------cchhhhhHHhhheeeeeeeec
Q 019439 246 YTLAPFVLKLSGA----TMFNLSLLTADMWAVVFRICFYHQK------VDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 246 ~~~~~~~~~~~~a----~~~~~~~~~~pv~~~l~~~~~~~e~------~~~~~~~G~~li~~g~~l~~~ 304 (341)
+..+-.+-.+.++ .--.+.+....+++-++|++ ++|- .-...++|.++++.++.+.-+
T Consensus 273 fffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 273 FFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 2333333334443 23334555666888888865 5663 233557788888777665543
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00038 Score=50.75 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecc
Q 019439 246 YTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 246 ~~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 305 (341)
|.+...++|+.+.. ..++-.-+..+.+.+.|+++|||+.+..+++|..++++|++..+..
T Consensus 44 f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 44 FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 67778899986643 4455555667889999999999999999999999999999987654
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.43 E-value=0.0014 Score=48.60 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 246 YTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 246 ~~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
+.+...++|+.+.. ..++-.-+..+.+.+.+++++||++++.+++|+.+|+.|++..+
T Consensus 49 f~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 49 FSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 66777888886654 34444445668889999999999999999999999999998764
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.40 E-value=0.00073 Score=49.80 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecc
Q 019439 245 FYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 245 ~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 305 (341)
++.+...++|+.+.. ..++-.-+..+.+.+.|++++||++++.+++|+.++++|++..+..
T Consensus 42 sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 42 SMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 366677788886643 3444444566889999999999999999999999999999987543
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.39 E-value=0.008 Score=46.89 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHH
Q 019439 24 FLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQR----LRVAWYWYLLLGFVDVQGNFLVN 99 (341)
Q Consensus 24 ~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~ 99 (341)
+++.....+.+.....+..+.++-. +|+..++..+....+.+..+....++. .++..++....|+++...-.+..
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence 3444445555555666666655322 689999999988888777666544432 11122334558888888888889
Q ss_pred HhhhccchhHHHHhh-hchHHHHHHHHHH----HhhcccchhhHHHHHHHHHhhHH
Q 019439 100 KAYQFSSITSVTLLD-CCTIAWAIVLTWL----FLGTRYSLWQLLGAALCVLGLGL 150 (341)
Q Consensus 100 ~al~~~~~~~~~~l~-~~~pi~~~ll~~l----~l~e~~~~~~~ig~~l~~~Gv~l 150 (341)
...+..+++.+..+. .-+.+...++..+ .-++++++.+.+|+.+.++|+.+
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999887554 4455667777775 34789999999999999999864
No 84
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.31 E-value=0.00034 Score=59.16 Aligned_cols=135 Identities=17% Similarity=0.275 Sum_probs=88.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcccccc-cccc-ccchHHHHHHHHHHH
Q 019439 164 RPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSL-ESVE-WSTNILLGFAGYAAS 241 (341)
Q Consensus 164 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 241 (341)
.+.+|..+..++ ..+....+..++... .+|.+......+.-.++.. +..++..... .+.. -.+...=.++|.. +
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e-~~p~e~a~~r~l~~mlit~-pcliy~~~~v~gp~g~R~~LiLRg~mG~t-g 110 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLE-NDPMELASFRLLVRMLITY-PCLIYYMQPVIGPEGKRKWLILRGFMGFT-G 110 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhc-cChhHhhhhhhhhehhhhh-eEEEEEeeeeecCCCcEEEEEeehhhhhh-H
Confidence 456788888888 667777777777644 4555554444444434332 2222221111 1100 1111112223333 2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 242 SFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
..+.++++++.+-+.+.++....|+++.++++.+++|+.+..+.+|..+.+.|+++..+.+
T Consensus 111 ----vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 111 ----VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred ----HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 2334568888888888999999999999999999999999999999999999999998755
No 85
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0058 Score=47.72 Aligned_cols=137 Identities=10% Similarity=0.052 Sum_probs=84.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHH
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFFVKKKD-RVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFM 244 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (341)
....+.+++++.+.....-.+.++.+..+ |....+..+..|++.......+.+.........+..++...-|.. ..+.
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~l-Ga~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLL-GAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccch-hhhh
Confidence 45678889999999999999988877755 777777777887777765555543332222212222222222222 2111
Q ss_pred HHHHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhc----cccchhhhhHHhhheeeeeeeec
Q 019439 245 FYTLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYH----QKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 245 ~~~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
-........+.+++ .......-+-+.+.+++.+=+. .+++..+++|.+++++|+++.+.
T Consensus 83 -vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 83 -VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred -hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 12223344455544 4444555666788888876443 56899999999999999665543
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.21 E-value=0.0039 Score=45.08 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHH
Q 019439 91 DVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALC 144 (341)
Q Consensus 91 ~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~ 144 (341)
.....+++..++++.|.+.+..+ ..+..+.+.+.+.+++||++|..+++|+.+.
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33346789999999999999766 5699999999999999999999999998763
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.11 E-value=0.0014 Score=56.27 Aligned_cols=131 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Q 019439 168 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 247 (341)
Q Consensus 168 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (341)
|++..+.|+++++...+=.|+. +..|++.+++++.....+...+.....+.+.+ .++..+.-...+.. +.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f-----~p~amlgG~lW~~g----N~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPF-----YPWAMLGGALWATG----NI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc-----eeHHHhhhhhhhcC----ce
Confidence 5677888999999888877776 45688888887766666666544444332221 22221111111111 23
Q ss_pred HHHHHHhhhhhhHHHh-hhhhhHHHHHHHHHH-Hhcccc-----chhhhhHHhhheeeeeeeeccccC
Q 019439 248 LAPFVLKLSGATMFNL-SLLTADMWAVVFRIC-FYHQKV-----DWLYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 248 ~~~~~~~~~~a~~~~~-~~~~~pv~~~l~~~~-~~~e~~-----~~~~~~G~~li~~g~~l~~~~~~~ 308 (341)
+..-.++..+-...-. -....-+.+...+.+ +||+++ ....++|++++++|..++..-+.+
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 3344555555433332 222344556666544 565443 458899999999998888754433
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.10 E-value=0.0026 Score=54.78 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCC
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDL 309 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 309 (341)
.....+.+.+.++++.++.+..+....+.+++.++++++++++++..||++..++.+|+.+.+......
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 344456777889999999999999999999999999999999999999999999999999988766544
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.04 E-value=0.0012 Score=49.07 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHH
Q 019439 84 YLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (341)
Q Consensus 84 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~ 151 (341)
+.+.=+++..++..|++.+...|.|.+.++ +++.-++|++.++++.+|..++++++|+.+.+.|+.+.
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 444445666679999999999999999988 58899999999998878888999999999999998753
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.86 E-value=0.013 Score=42.38 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhhhhHH-HhhhhhhHHHHHHHHHHHhccccchhhhhHHhhh
Q 019439 243 FMFYTLAPFVLKLSGATMF-NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIV 295 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~a~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li 295 (341)
...+.++..++++.+..++ ++..-+..+...+.|++++||++|..+++|..+|
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3346778889999776554 4444467789999999999999999999999876
No 91
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.80 E-value=0.0082 Score=54.03 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=85.0
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcccc----ccccccccchHHHHHHHHH
Q 019439 164 RPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELK----SLESVEWSTNILLGFAGYA 239 (341)
Q Consensus 164 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 239 (341)
+...|+++.+++++|++.+.+-.|+ .++-+=..+-....+...++..........+ ...+.+........+.|..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 4668999999999999999998888 3544322221111111111111001111111 1122222333333333332
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-HHhhhhhhHHHHHHHHHHHhcccc-------chhhhhHHhhheeeeeeeeccccCCC
Q 019439 240 ASSFMFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYHQKV-------DWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~l~~~~~~~e~~-------~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
=.+ .+..+..++++.+.+. .++..-++-+.+.+++.+++||-. ....++|.+++++|+++..+..++++
T Consensus 83 -W~i-G~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 83 -WGI-GGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred -HHh-hhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 222 3577788999977654 455555777899999999999754 23577899999999999988544443
No 92
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.60 E-value=0.022 Score=48.44 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHH
Q 019439 85 LLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGL 150 (341)
Q Consensus 85 ~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l 150 (341)
....+.......+....++|.+....++...+.++++.+++.++++|+++..+++|..+.+.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344445555567788999999999999999999999999999999999999999999999988653
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.48 E-value=0.02 Score=42.56 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019439 174 AGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYTLAPFVL 253 (341)
Q Consensus 174 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (341)
+.+++|++.+-+.|+..+..++..-.. +..-..... + .+|+.....+.-.. + -..++..+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~L-----l--------~n~~y~ipf~lNq~--G----Sv~f~~~L 62 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFL-----L--------LNPKYIIPFLLNQS--G----SVLFFLLL 62 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHH-----H--------HhHHHHHHHHHHHH--H----HHHHHHHH
Confidence 457889999999999977654444321 111111110 0 11233332222122 2 24445566
Q ss_pred hhhhhh-HHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeee
Q 019439 254 KLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 302 (341)
Q Consensus 254 ~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~ 302 (341)
.+.+-+ .+.+.+.+.=+++.+.++++.+|..+...++|++++++|+.+.
T Consensus 63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 665543 3344445566899999988888888889999999999999874
No 94
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.46 E-value=0.011 Score=52.54 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHH-HHHHHhhh---------hhhHHHHHHHHH
Q 019439 20 LYLLFLGQLVSFTLALMSFTSSLIAD--LGVDAPVTQSAFAYFSLALVYG-GVLLYRRQ---------RLRVAWYWYLLL 87 (341)
Q Consensus 20 ~~g~~~~~~~al~~~~~~~~~~~l~~--~~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~---------~~~~~~~~~~~~ 87 (341)
+.|.+.+....+..+.-....+.+.+ ....++........-++..+++ |+...... ...-.....+..
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence 44555555444444444555554442 2345567666655556666666 76543221 111123334444
Q ss_pred HHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 88 GFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 88 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
+++....|...|..+..+++-+.++...+.-+++...+++++++++++.+..|..++++|+.+-....
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 56777778899999999999999999999999999999999999999999999999999999877643
No 95
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.16 E-value=0.062 Score=48.09 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCc-hHHHHHHHHHHHHHHHHHHHH----Hhhhh----hhHHHHHH
Q 019439 16 TLRTLYLLFLGQLVSFTLALMSFTSSLIAD-LG-VDA-PVTQSAFAYFSLALVYGGVLL----YRRQR----LRVAWYWY 84 (341)
Q Consensus 16 ~~~~~~g~~~~~~~al~~~~~~~~~~~l~~-~~-~~~-p~~~~~~r~~~~~l~l~~~~~----~~~~~----~~~~~~~~ 84 (341)
-+|.+.|-+++++.|++.+......+.-.. .| ..+ +..+.+.. ++..++++|... .+..+ ...+...+
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvG-LfnllllwP~l~iL~~~~~e~F~lP~~~q~~~v 320 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVG-LFNLLLLWPPLIILDFFGEERFELPSSTQFSLV 320 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHH-HHHHHHHhHHHHHHHHhccCcccCCCCceeEee
Confidence 457788999999999998888777765533 32 333 44444433 445555554433 11111 12234456
Q ss_pred HHHHHHHHHH-HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCC
Q 019439 85 LLLGFVDVQG-NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 85 ~~~g~~~~~~-~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~ 156 (341)
+..++++.+. .+++..|.-.+++-.+++-..++....++...++.++++++..++|....++|-+++...+.
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 6778888887 99999999999999999999999999999999999999999999999999999999887654
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.12 Score=44.93 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 019439 36 MSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRR---------QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSS 106 (341)
Q Consensus 36 ~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 106 (341)
++.....+.++-..+++.+.+.-.+..++.-........ +..+.-++..++.+.++.+++.+.++-++.-+
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG 266 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence 333333444444556666666555555544333333222 22344478889999999999888888888877
Q ss_pred hhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 107 ITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 107 ~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
+-.-+.+..+.-+++.+++.+.++++++..||.|+.+.+.|+.+=....
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k 315 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK 315 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence 7777778888999999999999999999999999999999988766543
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.11 Score=43.60 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
.+..|+.+.+.++++..++++.+.-..+-++-.-+++..+.-+|+.+.+.++++.+++.+||+|.++.+.|...-...+
T Consensus 237 hP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 237 HPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 3445788889999999999999999999888888999999999999999999999999999999999999987766544
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.54 Score=36.90 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHH
Q 019439 21 YLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRL-----RVAWYWYLLLGFVDVQGN 95 (341)
Q Consensus 21 ~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~ 95 (341)
..++++.....+....+..+.-+.+... +|..-.+..+.....++..+.+.+.+.+ ++..++....|+++...-
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 3456666666666666666666665433 6888888888887777776665533221 122333455666666665
Q ss_pred HHHHHhhhccchhHHH-HhhhchHHHHHHHHHHHh----hcccchhhHHHHHHHHHhhHHHh
Q 019439 96 FLVNKAYQFSSITSVT-LLDCCTIAWAIVLTWLFL----GTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 96 ~~~~~al~~~~~~~~~-~l~~~~pi~~~ll~~l~l----~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
..-........++... .+..-+.+...++..+=. +++++..+++|+++.++|+.++.
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5555555555555554 445556666666666533 47899999999999999955443
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.038 Score=48.42 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=85.9
Q ss_pred CCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccc-ccc-ccccchHHHHHHHHH
Q 019439 162 GSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKS-LES-VEWSTNILLGFAGYA 239 (341)
Q Consensus 162 ~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 239 (341)
..+...|..+++.+.+..+...++.|+..++..... ...... ... .++.+|. |..
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~------------------~ra~~gg~~yl~~~~Ww~-----G~l 72 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG------------------LRAGEGGYGYLKEPLWWA-----GML 72 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhc------------------ccccCCCcchhhhHHHHH-----HHH
Confidence 345568999999999999999999888766532100 000111 111 1122333 222
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 240 ASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
++...-...+.+....+++.++..+.++.+.+.+++..+++|+++....+|+++.++|..+......+++
T Consensus 73 -tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 73 -TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred -HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 3333356666777778888888888888999999999999999999999999999998877765444333
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.011 Score=49.74 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Q 019439 168 GDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLESVEWSTNILLGFAGYAASSFMFYT 247 (341)
Q Consensus 168 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (341)
.++++++=++.|+..-....|. .-+|.+...-+.+.+.++....+. +..+. .++..+.....-|.. =+++ +.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~-~~~p~---~T~~~~iv~~isG~~-Ws~G-Q~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFL-FVSPE---LTLTIFIVGFISGAF-WSFG-QA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHhe-eecCc---cchhhHHHHHHhhhH-hhhh-hh
Confidence 4577888888898877766553 345555555555656555543333 32222 222333322222222 3333 46
Q ss_pred HHHHHHhhhhhhHH-HhhhhhhHHHHHHHHHHHhccccchhhh----hHHhhheeeeeeeeccccCCCC
Q 019439 248 LAPFVLKLSGATMF-NLSLLTADMWAVVFRICFYHQKVDWLYF----LAFGIVVIGLIIYSTTEKDLNP 311 (341)
Q Consensus 248 ~~~~~~~~~~a~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~~~~~~~~ 311 (341)
..+.+++..+.+.+ .+.+-.+-+-+.+++++.|||..+..++ +..++++.|+.+..++++.+++
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 67778888776654 4455577788999999999999888554 3567788999998877664433
No 101
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.03 E-value=0.099 Score=42.50 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 246 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
+..|..++++.+++.++......-.+..+++++++|++....+++..++.+.|+++..+.+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 46677899999999988888888899999999999999999999999999999999987654
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=0.72 Score=40.66 Aligned_cols=109 Identities=9% Similarity=-0.013 Sum_probs=81.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhh----------hh-hHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhh
Q 019439 47 GVDAPVTQSAFAYFSLALVYGGVLLYRRQ----------RL-RVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDC 115 (341)
Q Consensus 47 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~~----------~~-~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~ 115 (341)
+...-+.+.+...+.+.+.+......-.. .. ...+..+.+.|+++++.+++.+.+.+..++...++...
T Consensus 183 ~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~ 262 (314)
T KOG1444|consen 183 ANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGA 262 (314)
T ss_pred ccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhh
Confidence 33345556666666666665554432221 01 12245677788888888999999999999999998887
Q ss_pred chHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 116 CTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 116 ~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
..-..+.+...++.+++.++...+|+.+.++|-++-....
T Consensus 263 ~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 263 KNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred hhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 7777788888888899999999999999999998887654
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.55 E-value=0.4 Score=42.81 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=84.1
Q ss_pred CcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhcccccccc----ccccchHHHHHHHH
Q 019439 163 SRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSILELKSLES----VEWSTNILLGFAGY 238 (341)
Q Consensus 163 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 238 (341)
.....|+++-.+++++.+.+.+=.||. |+-+=..+-..+.+++.++..........++..+ .+.+......+.|+
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 345789999999999999999988775 4444344444455555555532222333333222 22233333333333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH-HHhhhhhhHHHHHHHHHHHhc-------cccchhhhhHHhhheeeeeeeeccccCCC
Q 019439 239 AASSFMFYTLAPFVLKLSGATM-FNLSLLTADMWAVVFRICFYH-------QKVDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~pv~~~l~~~~~~~-------e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
. =.++ .+.+-.++|+.+.+. .++..-+.-+++.++--++.| ++-....++|.++.++|+.+..+....|+
T Consensus 82 l-WGIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 82 L-WGIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred H-Hhcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 2 1222 355567888877553 333333444666666555533 22345788999999999999887665444
Q ss_pred C
Q 019439 311 P 311 (341)
Q Consensus 311 ~ 311 (341)
+
T Consensus 160 ~ 160 (344)
T PF06379_consen 160 K 160 (344)
T ss_pred h
Confidence 3
No 104
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.48 E-value=1.9 Score=38.73 Aligned_cols=136 Identities=14% Similarity=0.061 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----CCchhhhHHhHHHHHHHHHHHHHhcccc----cc---ccccccchHHHHHHH
Q 019439 169 DVLVIAGTIFFATSNVGEEFFVKK----KDRVEVVCMIGVYGLLVSAVQLSILELK----SL---ESVEWSTNILLGFAG 237 (341)
Q Consensus 169 ~~~~l~a~~~~a~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~ 237 (341)
....+...+-.+......|...+. ..|.+..+..-+.-.++.....+..+.. .. ...-|..+.-..-.+
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 344444455556666666555333 2344455555555555554333333211 11 111112221111111
Q ss_pred H-HHHHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeec
Q 019439 238 Y-AASSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYST 304 (341)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 304 (341)
+ .......+.+...+..+.++++..+...+...-+.++..++++++++..||....+...|+.+.+.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 1 112223344666788889999999999999999999999999999999999999999999999883
No 105
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=0.17 Score=43.40 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--------h--hhHHHHHHHHHH
Q 019439 19 TLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQ--------R--LRVAWYWYLLLG 88 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--------~--~~~~~~~~~~~g 88 (341)
.+.|.++|...++..+.-...++.....-...-|.++++....+.++++|.....+. . ..+-|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 467999999888887777777664333223346888899999999999988775431 1 122344555666
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 89 FVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 89 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
++++..++.-..=++.+++-+..+-..-....-.+++..+++|..+...|-+-++.+.|-..-+..
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v 328 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV 328 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence 666666665555566666655554444556667788999999999999998888888887776653
No 106
>PRK02237 hypothetical protein; Provisional
Probab=92.70 E-value=2.9 Score=30.61 Aligned_cols=50 Identities=22% Similarity=0.583 Sum_probs=38.8
Q ss_pred cchhHHHH-hhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 105 SSITSVTL-LDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 105 ~~~~~~~~-l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
.+.+.+.. --....+...+..+.+-++|+++..++|..++++|+.++...
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 33444433 335556667788899999999999999999999999998764
No 107
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=90.40 E-value=1.6 Score=36.50 Aligned_cols=105 Identities=9% Similarity=0.071 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhh--------hhHH-HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHH
Q 019439 50 APVTQSAFAYFSLALVYGGVLLYRRQR--------LRVA-WYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAW 120 (341)
Q Consensus 50 ~p~~~~~~r~~~~~l~l~~~~~~~~~~--------~~~~-~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~ 120 (341)
.-....++.-+++..+++.+...-... .+.+ .....+.|++.....++--.+++.++.+..+++..+.-.-
T Consensus 184 ~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp 263 (309)
T COG5070 184 KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLP 263 (309)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhCh
Confidence 345566677777777766655432211 1122 3455667777777788888999999999999999988888
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhc
Q 019439 121 AIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 121 ~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
.++-+.++++|+.++..+.++.++++...+-...
T Consensus 264 ~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 264 IALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998888888887766665543
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.27 E-value=4.2 Score=35.35 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecc
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTT 305 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 305 (341)
+-.....+.+.++..++++...+..-...+++.+++.-+++.+++..+|+|+..+.+|++..-..
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 33333466677888899988888877778999999999999999999999999999999887655
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.72 E-value=3.1 Score=30.36 Aligned_cols=54 Identities=26% Similarity=0.556 Sum_probs=41.8
Q ss_pred hhccchhHHH-HhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 102 YQFSSITSVT-LLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 102 l~~~~~~~~~-~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
++-.+.+.+. .--....+...+..+.+-++|+++..++|..++++|+.++...+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4444445443 33455677788888999999999999999999999999988653
No 110
>PRK02237 hypothetical protein; Provisional
Probab=89.38 E-value=1.6 Score=31.89 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=37.6
Q ss_pred HhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 262 NLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 262 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
+...-+-.+.+.++++.+-|++|+..+++|..+.++|+.+....++
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 3334445588899999999999999999999999999987766554
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=89.31 E-value=11 Score=32.54 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=70.4
Q ss_pred HHHHHHHHHH--HhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Q 019439 34 ALMSFTSSLI--ADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVT 111 (341)
Q Consensus 34 ~~~~~~~~~l--~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 111 (341)
++..+++.+. .+.+..+++.+-++......+.-+.....+.. ..-+..-.+.|.+...+|.+..-.++..+.+...
T Consensus 8 a~~~fGs~~vPvK~~~~gDg~~fQw~~~~~i~~~g~~v~~~~~~--p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~ 85 (254)
T PF07857_consen 8 AVLFFGSNFVPVKKFDTGDGFFFQWVMCSGIFLVGLVVNLILGF--PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGM 85 (254)
T ss_pred HHHHhcccceeeEeccCCCcHHHHHHHHHHHHHHHHHHHHhcCC--CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHH
Confidence 3334444444 22344566655555544333333332222222 2223345666788888899999999999999999
Q ss_pred HhhhchHHH-HHHHHHH-Hhhcc-----cchhhHHHHHHHHHhhHHHhhc
Q 019439 112 LLDCCTIAW-AIVLTWL-FLGTR-----YSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 112 ~l~~~~pi~-~~ll~~l-~l~e~-----~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
.+.+..-+. .-..+.+ +++++ -+...++|++++++|..+....
T Consensus 86 liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 86 LIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred HHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 887664333 3343433 23322 3577889999999998887653
No 112
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.90 E-value=0.69 Score=33.51 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 83 WYLLLGFVDVQGNFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
.+.+.=.+...++.+||.-+++.|.+.+..+ +++.-.|+++.+..+-.|-...+.++|..+..+|+.+..
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3455555777778899999999999999866 567778899999874444456777789999999887653
No 113
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.81 E-value=1.2 Score=32.42 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=37.8
Q ss_pred hhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 263 LSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 263 ~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
...-+-.+.+.++++.+-|++|+..+++|..+.++|+.+..+.+|
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 333345588999999999999999999999999999988877654
No 114
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=88.00 E-value=18 Score=32.05 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=45.3
Q ss_pred HHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHH
Q 019439 95 NFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (341)
Q Consensus 95 ~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~ 151 (341)
-+.-+.=+..++.-..++..-..-+.+.+++..+++++++...|.|..++..|+..=
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 334455555566666666666677889999999999999999999999999998876
No 115
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=80.85 E-value=18 Score=31.50 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 80 AWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
.+...++.+..+..+......-++.-++..++.+....-..|.+++.+++.++++....-+..+.+.|+.+=..++
T Consensus 259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3444555566666664444444555666777777777888999999999999999999999999999999988875
No 116
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=77.54 E-value=40 Score=28.01 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHhccccchhhhhHHhhhe--eeeeeeecc
Q 019439 273 VVFRICFYHQKVDWLYFLAFGIVV--IGLIIYSTT 305 (341)
Q Consensus 273 ~l~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~ 305 (341)
-.+|..++.+-.-+.+++|..|.+ +|.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345777788888888888888875 355555443
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=77.37 E-value=15 Score=26.68 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 265 LLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 265 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
.-+-.+.+.++.+++=|.+|+...++|..+-++|+.+....++
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3345578899999999999999999999999999888877654
No 118
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=76.79 E-value=34 Score=29.96 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH---Hhhhh---------------hhH
Q 019439 18 RTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL---YRRQR---------------LRV 79 (341)
Q Consensus 18 ~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~---~~~~~---------------~~~ 79 (341)
+...|+.+-.+..+..+-.+....-..++-.-++-...++--++....++...- .+++. .+.
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccH
Confidence 455666665555555555666666555543445555555554445444433311 00000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc----cchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 80 AWYWYLLLGFVDVQGNFLVNKAYQF----SSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 80 ~~~~~~~~g~~~~~~~~~~~~al~~----~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
.|..++ +....+++...+... ++.-+++++..+.=.+..+++...++..+++.+|+|..+.++|..+.....
T Consensus 241 ~~~yLl----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 241 MWVYLL----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHH----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122111 122223322222222 233344566677788999999999999999999999999999999887543
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=76.33 E-value=27 Score=25.44 Aligned_cols=42 Identities=26% Similarity=0.576 Sum_probs=34.9
Q ss_pred hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 114 DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 114 ~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
-....+...+..+++-|.++++..++|..++++|+.++...+
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 345566677788888899999999999999999998887653
No 120
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=74.70 E-value=25 Score=28.63 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH--Hhh--hhhhHHHHHHHHHHHHHHHHHHHH
Q 019439 23 LFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLL--YRR--QRLRVAWYWYLLLGFVDVQGNFLV 98 (341)
Q Consensus 23 ~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~~~~ 98 (341)
+++--+.+++.+.+.++.+-...+|.+. ....-....+.++..+.. +.+ +..|..+++.++...+.+....+.
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlIt---lll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v 178 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLIT---LLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAV 178 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHH---HHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 4444445666666655555433333322 222222222222222222 111 234445677777777776665566
Q ss_pred HHhhhccchhHHHHhhhchHHHHHHHHHHH
Q 019439 99 NKAYQFSSITSVTLLDCCTIAWAIVLTWLF 128 (341)
Q Consensus 99 ~~al~~~~~~~~~~l~~~~pi~~~ll~~l~ 128 (341)
+.+-.+.|.+.-- .+.|+...+++...
T Consensus 179 ~i~t~~lPtslN~---~L~pi~l~IiGav~ 205 (226)
T COG4858 179 MIATVFLPTSLNP---QLPPIALTIIGAVI 205 (226)
T ss_pred HHHHhhCCCcCCc---CCchHHHHHHHHHH
Confidence 6777777766443 24555555554443
No 121
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=73.36 E-value=0.42 Score=41.78 Aligned_cols=128 Identities=11% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHhc----c-----cc----ccccccccchHHHHHHHHH
Q 019439 173 IAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYGLLVSAVQLSIL----E-----LK----SLESVEWSTNILLGFAGYA 239 (341)
Q Consensus 173 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~----~~~~~~~~~~~~~~~~~~~ 239 (341)
+++.+||+-.-...|-..++-...+...+=+..+.+...++..+. . .+ +..+.+|........-|++
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 345677777777766665442222222222233333332222221 1 11 1223344444443333443
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhh-hhhHHHHHHHHHHHhccccc--hhhhhHHhhheeeeeeee
Q 019439 240 ASSFMFYTLAPFVLKLSGATMFNLSL-LTADMWAVVFRICFYHQKVD--WLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~pv~~~l~~~~~~~e~~~--~~~~~G~~li~~g~~l~~ 303 (341)
-.. .+++..+++...+.+++-.+. .+.-+.++.+.|+ ++.+.+ ...+.|.+++++++++-.
T Consensus 82 -fnl-gNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 82 -FNL-GNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred -hhh-HHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 222 256666666665544333322 1222455555554 345544 255668888887777654
No 122
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=70.26 E-value=98 Score=29.19 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=8.0
Q ss_pred cCCCchHHHHHHHH
Q 019439 46 LGVDAPVTQSAFAY 59 (341)
Q Consensus 46 ~~~~~p~~~~~~r~ 59 (341)
+-..||++....-.
T Consensus 320 ~~~iHpiQY~LVGl 333 (430)
T PF06123_consen 320 KLRIHPIQYLLVGL 333 (430)
T ss_pred cCcccHHHHHHHHH
Confidence 34566776665443
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.49 E-value=5.9 Score=28.87 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHH
Q 019439 117 TIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (341)
Q Consensus 117 ~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~ 151 (341)
+....+.++.+++||++++.+..|.+..+.++..+
T Consensus 72 tL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 72 TLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34445677888999999999999999888776654
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=67.07 E-value=5.4 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHhccccchhhhhHHhhheeeeeee
Q 019439 272 AVVFRICFYHQKVDWLYFLAFGIVVIGLIIY 302 (341)
Q Consensus 272 ~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~ 302 (341)
=..+++++++|++++..+.|.++++.++...
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3456778999999999999999998876654
No 125
>PRK11715 inner membrane protein; Provisional
Probab=65.63 E-value=1.2e+02 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=10.6
Q ss_pred hhcccchhhHHHHHHHHHhhHHHhh
Q 019439 129 LGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 129 l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
+|.+-...-..++..++-|+.....
T Consensus 380 l~~~k~g~~~~~~L~~LYg~Ly~lL 404 (436)
T PRK11715 380 LRSWKRGLLFAAALAALYGVLYGLL 404 (436)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444443
No 126
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=65.18 E-value=2.9 Score=35.84 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeecccc
Q 019439 246 YTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTEK 307 (341)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 307 (341)
+.+...+.++++-+.+.+.-.-..+...+++|++++.+-.+.++.|.++-+.|+++...++-
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 34445678888877777777766677899999999999999999999999999999876553
No 127
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=63.54 E-value=2.3 Score=36.74 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred cchhHHHHhhhchHHHHH-HHHHHHhhcc-cchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHH
Q 019439 105 SSITSVTLLDCCTIAWAI-VLTWLFLGTR-YSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGT 176 (341)
Q Consensus 105 ~~~~~~~~l~~~~pi~~~-ll~~l~l~e~-~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~ 176 (341)
.+-+..+++++...+.+. ++-++++|+| +-+...+.++++++-..+...-. ...+....|+++.++++
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~t----LtGQ~LF~Gi~~l~l~~ 116 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWT----LTGQTLFVGIVILFLCC 116 (381)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHH
Confidence 333334444444443322 2223334444 45666666666655444433221 12334446665544433
No 128
>PF14851 FAM176: FAM176 family
Probab=62.28 E-value=46 Score=26.34 Aligned_cols=24 Identities=13% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHhhhhhhHHHhhhhhhHHHHHHHHHH
Q 019439 251 FVLKLSGATMFNLSLLTADMWAVVFRIC 278 (341)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~pv~~~l~~~~ 278 (341)
++.=+..+-.++++. +.++.+|.+
T Consensus 12 ya~I~~~PE~~aLYF----v~gVC~GLl 35 (153)
T PF14851_consen 12 YAHIRDNPERFALYF----VSGVCAGLL 35 (153)
T ss_pred HHHHHhChHHHHHHH----HHHHHHHHH
Confidence 333344555666655 445555544
No 129
>PRK11715 inner membrane protein; Provisional
Probab=61.87 E-value=1.4e+02 Score=28.21 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 019439 81 WYWYLLLG 88 (341)
Q Consensus 81 ~~~~~~~g 88 (341)
...+++.|
T Consensus 331 piQYlLVG 338 (436)
T PRK11715 331 PVQYLLVG 338 (436)
T ss_pred HHHHHHHH
Confidence 33444444
No 130
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=60.82 E-value=54 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred cchHHhHHHHHHHHHHHHHHHHHHHH-hhcCCchhhhH
Q 019439 164 RPLLGDVLVIAGTIFFATSNVGEEFF-VKKKDRVEVVC 200 (341)
Q Consensus 164 ~~~~G~~~~l~a~~~~a~~~v~~~~~-~~~~~~~~~~~ 200 (341)
.+....+++.++++.+..|.++.-.. +++.+|.++.+
T Consensus 192 ~~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 192 GPILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHH
Confidence 45677789999999999999887665 45677776543
No 131
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=55.94 E-value=2.5e+02 Score=28.92 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=29.1
Q ss_pred hHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHH
Q 019439 108 TSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLV 151 (341)
Q Consensus 108 ~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~ 151 (341)
+.+.++..+.|+-.+.++.....+|.+...+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45567788888888888888776665444555555555565443
No 132
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=53.93 E-value=7.4 Score=30.13 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=5.9
Q ss_pred hhHHhhheeeeee
Q 019439 289 FLAFGIVVIGLII 301 (341)
Q Consensus 289 ~~G~~li~~g~~l 301 (341)
++|..+++.|++.
T Consensus 90 i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 90 IIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 133
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=53.57 E-value=2e+02 Score=27.17 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHH-HHHHHHHHhhcccchhhHHHHHHHHHhhHHHhh
Q 019439 75 QRLRVAWYWYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAW-AIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLL 153 (341)
Q Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~-~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~ 153 (341)
++.+.+...+++.|+.......+...=-+|.+-..+..+.+...+. ......-++|.+-......+++.++-|......
T Consensus 319 ~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lL 398 (430)
T PF06123_consen 319 SKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLL 398 (430)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888876666544443333556666666655443333 334444445554444455555555555555554
Q ss_pred c
Q 019439 154 S 154 (341)
Q Consensus 154 ~ 154 (341)
.
T Consensus 399 q 399 (430)
T PF06123_consen 399 Q 399 (430)
T ss_pred H
Confidence 3
No 134
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=53.34 E-value=19 Score=26.32 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhhh-HHHhhhhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 247 TLAPFVLKLSGAT-MFNLSLLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 247 ~~~~~~~~~~~a~-~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
.+++..+++.+-+ .+.+.+.+.-.++.+.|...-.|......++|..++++|+++..
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3334455554433 23344445568889999876566778889999999999998753
No 135
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=50.78 E-value=1.5e+02 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 019439 77 LRVAWYWYLLLGFVDVQGNFLVNKAYQFSSIT 108 (341)
Q Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 108 (341)
.|..+++.++.++...+..+..+...+..|+.
T Consensus 142 ~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 142 KRPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34455556666655555544444444445554
No 136
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.19 E-value=1e+02 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=26.7
Q ss_pred HHHHHHHHhccccchhhhhHHhhheeeeeeee
Q 019439 272 AVVFRICFYHQKVDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 272 ~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 303 (341)
-..++.+.++|++.+..+.|..+++.|+.+..
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999988876543
No 137
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=46.28 E-value=2.9e+02 Score=26.89 Aligned_cols=15 Identities=0% Similarity=-0.033 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHH
Q 019439 265 LLTADMWAVVFRICF 279 (341)
Q Consensus 265 ~~~~pv~~~l~~~~~ 279 (341)
....|+-+.++|.+.
T Consensus 353 ~g~~~lGsll~G~la 367 (524)
T PF05977_consen 353 FGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666666543
No 138
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=45.45 E-value=41 Score=21.15 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=23.2
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019439 7 INSWWRSHVTLRTLYLLFLGQLVSFTLALMSFTSSLIADL 46 (341)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~al~~~~~~~~~~~l~~~ 46 (341)
+-.|++.||+-+..|.-..|.++-++....+..+.++..+
T Consensus 2 ~s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred CCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455666655555555556666556666666666666543
No 139
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=44.55 E-value=2.6e+02 Score=27.00 Aligned_cols=42 Identities=7% Similarity=0.344 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhc----cccc---h-hhhhHHhhheeeeeeeeccccC
Q 019439 267 TADMWAVVFRICFYH----QKVD---W-LYFLAFGIVVIGLIIYSTTEKD 308 (341)
Q Consensus 267 ~~pv~~~l~~~~~~~----e~~~---~-~~~~G~~li~~g~~l~~~~~~~ 308 (341)
+..+++.+++.-+++ -... + .-+.|.+.++.|+++...-+..
T Consensus 181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 445777777777543 2222 2 2344777777887777654443
No 140
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=42.51 E-value=2.8e+02 Score=25.69 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=41.3
Q ss_pred hcccchh---hHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHH--HHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHH
Q 019439 130 GTRYSLW---QLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVL--VIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGV 204 (341)
Q Consensus 130 ~e~~~~~---~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~--~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~ 204 (341)
.||..+. +.-+.+++.+...++..-+.-+. ....+..+... .+=.++..-+...=.|+..|.-++.-..+....
T Consensus 14 e~~~~~~~f~~l~~~vl~~~~~~~lsnlgli~~-p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~ 92 (378)
T PF05684_consen 14 EQKTKWGFFKYLPGAVLCYLLGMLLSNLGLIDS-PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGA 92 (378)
T ss_pred hcchhhhhHhhcCHHHHHHHHHHHHHHCCCcCC-CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHH
Confidence 4555554 44556666666666654433210 22223333222 222333444444555666566666666666666
Q ss_pred HHHHHHHHH
Q 019439 205 YGLLVSAVQ 213 (341)
Q Consensus 205 ~~~~~~~~~ 213 (341)
.+.++..+.
T Consensus 93 ~g~viG~~v 101 (378)
T PF05684_consen 93 VGTVIGAVV 101 (378)
T ss_pred HHHHHHHHH
Confidence 666666543
No 141
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=41.75 E-value=1.4e+02 Score=28.25 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=27.0
Q ss_pred HhhhhhhHHHHHHHHHHHhccc-cchhhhhHHhhheeeeeeeeccccCCC
Q 019439 262 NLSLLTADMWAVVFRICFYHQK-VDWLYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 262 ~~~~~~~pv~~~l~~~~~~~e~-~~~~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
++-..+.|+++.+ +++.++-. -...-..|++-++.|++++.+.+++.+
T Consensus 163 NiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 163 NIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred hcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3333344554444 55555533 333555677888888888776554433
No 142
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=41.17 E-value=43 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhhHHHhhcCC
Q 019439 137 QLLGAALCVLGLGLVLLSDA 156 (341)
Q Consensus 137 ~~ig~~l~~~Gv~l~~~~~~ 156 (341)
|++|+++.+.|+.++.+.-+
T Consensus 1 kiigi~Llv~GivLl~~G~~ 20 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQ 20 (59)
T ss_pred CeeeehHHHHHHHHHHhhhh
Confidence 45788899999999987643
No 143
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=40.63 E-value=3.8e+02 Score=26.65 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=23.2
Q ss_pred ccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHH
Q 019439 132 RYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGE 186 (341)
Q Consensus 132 ~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~ 186 (341)
+.++.-+++.++..+++..+...+. ++.+. ...+.++++++.+.-.+..
T Consensus 378 ~~Kw~li~~~~~~ta~~Gama~~~~----~n~~~--~i~~~~l~g~giG~~~~~~ 426 (599)
T PF06609_consen 378 HIKWQLIFGSVLMTAFCGAMAAVRP----DNKNA--AIAFLVLAGFGIGGILVPA 426 (599)
T ss_pred chhHHHHHHHHHHHHHHHHHHHccC----CCcch--HHHHHHHHHHhHHHHHHHH
Confidence 4445445666666655555543321 12222 3344555555555444433
No 144
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=40.31 E-value=2.4e+02 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=11.8
Q ss_pred cchhhhhHHhhheeeeeeee
Q 019439 284 VDWLYFLAFGIVVIGLIIYS 303 (341)
Q Consensus 284 ~~~~~~~G~~li~~g~~l~~ 303 (341)
|...+-.++.++.+|+....
T Consensus 183 P~~~~G~pIafI~aGlmalA 202 (244)
T PRK01061 183 PKNLQGMGISFITTGLIAMA 202 (244)
T ss_pred CccccchhHHHHHHHHHHHH
Confidence 44455566677766655543
No 145
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.17 E-value=63 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=18.4
Q ss_pred hccchhHHHHhhhchHHHHHHHHHHH
Q 019439 103 QFSSITSVTLLDCCTIAWAIVLTWLF 128 (341)
Q Consensus 103 ~~~~~~~~~~l~~~~pi~~~ll~~l~ 128 (341)
.--+.-.++.+.|+.|+++.+++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778888888888887764
No 146
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=40.00 E-value=77 Score=27.23 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=36.9
Q ss_pred hcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 019439 130 GTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVKKKDR 195 (341)
Q Consensus 130 ~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~ 195 (341)
|+| +...+..+.++.+|+..+...-...+.....+..|..+.......||.=....|+..|..+.
T Consensus 92 ~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSv 156 (243)
T KOG1623|consen 92 KKK-TVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSV 156 (243)
T ss_pred chh-eeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCce
Confidence 444 33334445555555544443222111234466789999988888888777766776665433
No 147
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=39.64 E-value=25 Score=29.68 Aligned_cols=14 Identities=21% Similarity=0.021 Sum_probs=6.3
Q ss_pred eeeeeeeccccCCC
Q 019439 297 IGLIIYSTTEKDLN 310 (341)
Q Consensus 297 ~g~~l~~~~~~~~~ 310 (341)
+|..+|....++++
T Consensus 174 GGa~yYfK~~K~K~ 187 (218)
T PF14283_consen 174 GGAYYYFKFYKPKQ 187 (218)
T ss_pred cceEEEEEEecccc
Confidence 45555544434333
No 148
>PRK11380 hypothetical protein; Provisional
Probab=37.28 E-value=1.9e+02 Score=26.25 Aligned_cols=23 Identities=17% Similarity=-0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 019439 82 YWYLLLGFVDVQGNFLVNKAYQF 104 (341)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~~al~~ 104 (341)
.+.+.++.+.......+.-++++
T Consensus 118 ~r~L~L~aVya~~~g~~~etLet 140 (353)
T PRK11380 118 RQALQLIAVYRFYHGQWSETLEF 140 (353)
T ss_pred HHHHHHhhHHHHHhhhhhhhhhc
Confidence 34555565555544455555554
No 149
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=35.25 E-value=3e+02 Score=23.83 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=18.4
Q ss_pred HHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHH
Q 019439 142 ALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNV 184 (341)
Q Consensus 142 ~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v 184 (341)
+..++|+++....+.-++.......-|..+++.+.+...++..
T Consensus 15 ~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~ 57 (249)
T PF10225_consen 15 AQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQL 57 (249)
T ss_pred HHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444566666554432111122223455555554444444433
No 150
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=33.92 E-value=2.4e+02 Score=22.33 Aligned_cols=77 Identities=12% Similarity=-0.050 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 019439 22 LLFLGQLVSFTLALMSFTSSLIADLGVDAP-----VTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQGNF 96 (341)
Q Consensus 22 g~~~~~~~al~~~~~~~~~~~l~~~~~~~p-----~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 96 (341)
++++|-..+.+.+...-..+.+...+..++ ......|.+......+.+...|++..++.+......+++....+.
T Consensus 39 ~~l~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 118 (172)
T PF12822_consen 39 GFLLGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKKRIIIAIIIAGVLGTLVNT 118 (172)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444443233233 233333433333322222112222223335555556666655544
Q ss_pred HH
Q 019439 97 LV 98 (341)
Q Consensus 97 ~~ 98 (341)
..
T Consensus 119 ~~ 120 (172)
T PF12822_consen 119 LL 120 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 151
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=33.91 E-value=1.1e+02 Score=24.44 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhhhHHHHHHHHHHHhcc-ccchhhhhHHhhheeeeee
Q 019439 243 FMFYTLAPFVLKLSGATMFNLSLLTADMWAVVFRICFYHQ-KVDWLYFLAFGIVVIGLII 301 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~a~~~~~~~~~~pv~~~l~~~~~~~e-~~~~~~~~G~~li~~g~~l 301 (341)
..+|..|...-....+........++-+....++.+++++ .+....+.++.+-++..++
T Consensus 62 iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l 121 (161)
T COG3476 62 ISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVL 121 (161)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 3445555544333323333334445557777777777776 5666666665554444433
No 152
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.72 E-value=7.1 Score=32.84 Aligned_cols=22 Identities=0% Similarity=0.164 Sum_probs=14.1
Q ss_pred hHHhhheeeeeeeeccccCCCC
Q 019439 290 LAFGIVVIGLIIYSTTEKDLNP 311 (341)
Q Consensus 290 ~G~~li~~g~~l~~~~~~~~~~ 311 (341)
.|++|.++++++..+.++++.+
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777777666555443
No 153
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=33.15 E-value=2e+02 Score=27.32 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=6.6
Q ss_pred hhhHHhhheeeeee
Q 019439 288 YFLAFGIVVIGLII 301 (341)
Q Consensus 288 ~~~G~~li~~g~~l 301 (341)
.+.|+.+++++++.
T Consensus 416 ~~~~~~~~i~~~~~ 429 (476)
T PLN00028 416 SLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544443
No 154
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.63 E-value=1.4e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=21.4
Q ss_pred hcccchhhHHHHHHHHHhhHHHhhc
Q 019439 130 GTRYSLWQLLGAALCVLGLGLVLLS 154 (341)
Q Consensus 130 ~e~~~~~~~ig~~l~~~Gv~l~~~~ 154 (341)
..|++..+..|+.+.++|..++..+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578899999999999999988864
No 155
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=32.63 E-value=1.3e+02 Score=19.01 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHHHHHHhh
Q 019439 136 WQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVGEEFFVK 191 (341)
Q Consensus 136 ~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~ 191 (341)
...+|.++.++|++++..++ .|....+++-...+...-..|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPG-----------pG~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG-----------PGLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC-----------CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35678889999999888764 2556666666667777766666543
No 156
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=29.07 E-value=2.8e+02 Score=21.68 Aligned_cols=30 Identities=0% Similarity=-0.104 Sum_probs=24.3
Q ss_pred CCCcchHHhHHHHHHHHHHHHHHHHHHHHh
Q 019439 161 GGSRPLLGDVLVIAGTIFFATSNVGEEFFV 190 (341)
Q Consensus 161 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 190 (341)
.+.......+..+.++..|.-|...+||..
T Consensus 115 ~d~~~i~~l~~~li~a~IwipYf~~S~RVK 144 (149)
T PF10754_consen 115 IDAEAIRELLRSLIAAAIWIPYFLRSKRVK 144 (149)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 334456788899999999999999999873
No 157
>TIGR00893 2A0114 d-galactonate transporter.
Probab=28.62 E-value=4.2e+02 Score=23.49 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=3.3
Q ss_pred HHHHHhhcC
Q 019439 185 GEEFFVKKK 193 (341)
Q Consensus 185 ~~~~~~~~~ 193 (341)
...+..++.
T Consensus 48 ~~g~l~d~~ 56 (399)
T TIGR00893 48 PGGWLLDRF 56 (399)
T ss_pred hHHHHHHhc
Confidence 333333333
No 158
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=27.45 E-value=1.3e+02 Score=22.47 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=9.1
Q ss_pred eeeeeeeccccCCC
Q 019439 297 IGLIIYSTTEKDLN 310 (341)
Q Consensus 297 ~g~~l~~~~~~~~~ 310 (341)
+|.++|+..+.|.+
T Consensus 94 aglv~yn~~~grhp 107 (148)
T PTZ00264 94 AGLVFYNAGNGRHP 107 (148)
T ss_pred ceEEEEecCCCCCC
Confidence 57888886555444
No 159
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=27.45 E-value=1.7e+02 Score=19.19 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHH
Q 019439 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDA-PVTQ 54 (341)
Q Consensus 17 ~~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~-p~~~ 54 (341)
|++..++++..+...|+...+...++..+.|..+ |+..
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfL 40 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFL 40 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHH
Confidence 4455566666666666666666667766666433 5433
No 160
>PF08042 PqqA: PqqA family; InterPro: IPR011725 This entry describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product [].; GO: 0018189 pyrroloquinoline quinone biosynthetic process
Probab=26.52 E-value=30 Score=17.01 Aligned_cols=6 Identities=50% Similarity=1.437 Sum_probs=3.3
Q ss_pred CCCccc
Q 019439 1 MNWNAP 6 (341)
Q Consensus 1 ~~~~~~ 6 (341)
|.|++|
T Consensus 1 M~W~~P 6 (20)
T PF08042_consen 1 MAWTKP 6 (20)
T ss_pred CCccCC
Confidence 455555
No 161
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=26.11 E-value=3.6e+02 Score=21.89 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=43.7
Q ss_pred HHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHH-HHHHHHhhHHHhhcCCCCCCCCCcch-HHhHHHHH
Q 019439 97 LVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLG-AALCVLGLGLVLLSDAGGDGGGSRPL-LGDVLVIA 174 (341)
Q Consensus 97 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig-~~l~~~Gv~l~~~~~~~~~~~~~~~~-~G~~~~l~ 174 (341)
.++.+.++.+.-.++...-...+....+.+.. .+|+...++++ .++.+.|...+..+++ ..-.+ .-++..+.
T Consensus 12 ~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~-~rkv~km~l~s~~~v~vFG~lTl~f~~d-----~FIKwK~TIi~~lF 85 (180)
T COG2917 12 LFFAAYKVYGIYAATAVLIVATVIQLAILWIK-YRKVEKMQLISGVVVVVFGGLTLIFHND-----TFIKWKPTIIYWLF 85 (180)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhchhHhhccCc-----ceEEeeHHHHHHHH
Confidence 34444444455555554444555666666654 45566666654 4456667776666542 22222 34455555
Q ss_pred HHHHHHHHHHHH
Q 019439 175 GTIFFATSNVGE 186 (341)
Q Consensus 175 a~~~~a~~~v~~ 186 (341)
+........+..
T Consensus 86 a~~Llgs~~~~~ 97 (180)
T COG2917 86 ALVLLGSQFLFK 97 (180)
T ss_pred HHHHHHHHHHhc
Confidence 555555444433
No 162
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.65 E-value=2.6e+02 Score=20.22 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 120 WAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 120 ~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
.-+.++.+.+||++++..+.+..+...|+.++.
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999999988887765
No 163
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=25.56 E-value=70 Score=26.74 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=29.0
Q ss_pred hhhhHHHhhhhhhHHHHHHHHHHHhccccc-hhhhhHH-hhheeeeeeee
Q 019439 256 SGATMFNLSLLTADMWAVVFRICFYHQKVD-WLYFLAF-GIVVIGLIIYS 303 (341)
Q Consensus 256 ~~a~~~~~~~~~~pv~~~l~~~~~~~e~~~-~~~~~G~-~li~~g~~l~~ 303 (341)
..+...+......|..+..+|..+-+-.+. ..+++|. +++..|..+..
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 334456666667778888888766543334 3556654 44556776654
No 164
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=24.97 E-value=5e+02 Score=23.14 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q 019439 51 PVTQSAFAYFSLALV 65 (341)
Q Consensus 51 p~~~~~~r~~~~~l~ 65 (341)
++....++.....++
T Consensus 185 ~~~~~~~~~~~~~l~ 199 (303)
T COG1295 185 VLILLRLRLLVSLLL 199 (303)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555444443
No 165
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=24.51 E-value=1.1e+02 Score=17.15 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=16.1
Q ss_pred HhhhchHHHHHHHHHHHhhcccchh
Q 019439 112 LLDCCTIAWAIVLTWLFLGTRYSLW 136 (341)
Q Consensus 112 ~l~~~~pi~~~ll~~l~l~e~~~~~ 136 (341)
++...--+...++..++.|||+...
T Consensus 7 iLDgiL~iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 7 ILDGILFIYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444445666777788888887654
No 166
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.34 E-value=1.4e+02 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=16.2
Q ss_pred cchhHHHHhhhchHHHHHHHHHHH
Q 019439 105 SSITSVTLLDCCTIAWAIVLTWLF 128 (341)
Q Consensus 105 ~~~~~~~~l~~~~pi~~~ll~~l~ 128 (341)
.....++.+.|..|++..+++.++
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777888877777654
No 167
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=23.86 E-value=1.1e+02 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 019439 167 LGDVLVIAGTIFFATSNVGE 186 (341)
Q Consensus 167 ~G~~~~l~a~~~~a~~~v~~ 186 (341)
.-++..++.+..|++|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34567788999999999864
No 168
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.83 E-value=1.4e+02 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=17.4
Q ss_pred hccchhHHHHhhhchHHHHHHHHHHH
Q 019439 103 QFSSITSVTLLDCCTIAWAIVLTWLF 128 (341)
Q Consensus 103 ~~~~~~~~~~l~~~~pi~~~ll~~l~ 128 (341)
...+.-.++.+.|+.|++.++.+..+
T Consensus 70 ~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 70 AEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777888888877776553
No 169
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=22.56 E-value=1.1e+02 Score=19.25 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=8.2
Q ss_pred CccchhhHHHhh
Q 019439 3 WNAPINSWWRSH 14 (341)
Q Consensus 3 ~~~~~~~~~~~~ 14 (341)
||+|.+.+.+-+
T Consensus 21 ~~~~~~l~~KGy 32 (53)
T PF05360_consen 21 WNAPLDLSEKGY 32 (53)
T ss_pred HhCCCCHHHHHH
Confidence 788877775444
No 170
>PF14851 FAM176: FAM176 family
Probab=22.24 E-value=45 Score=26.38 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=3.8
Q ss_pred cccchhhhh
Q 019439 282 QKVDWLYFL 290 (341)
Q Consensus 282 e~~~~~~~~ 290 (341)
|+.....+.
T Consensus 20 E~~aLYFv~ 28 (153)
T PF14851_consen 20 ERFALYFVS 28 (153)
T ss_pred HHHHHHHHH
Confidence 344444443
No 171
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=21.50 E-value=7e+02 Score=23.60 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=7.6
Q ss_pred HHHHHHHHhhccc
Q 019439 121 AIVLTWLFLGTRY 133 (341)
Q Consensus 121 ~~ll~~l~l~e~~ 133 (341)
..+++.++.+-|.
T Consensus 7 ~~~~~~~~~g~~~ 19 (433)
T PRK09412 7 IIVLLAIFLGARL 19 (433)
T ss_pred HHHHHHHHHhHhh
Confidence 4455666666655
No 172
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=21.48 E-value=8.6e+02 Score=24.67 Aligned_cols=95 Identities=19% Similarity=0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHhhhccchhH
Q 019439 32 TLALMSFTSSLIADLGVDAPVTQSAFAYFSLALVYGGVLLYRRQRLRVAWYWYLLLGFVDVQG--NFLVNKAYQFSSITS 109 (341)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~al~~~~~~~ 109 (341)
+.-+..+..++..++|..+|..-...-...+..+...=.+.++| ..+.....+..|.+.... .+.-+.-++..|+..
T Consensus 14 l~lG~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l~~~g~~l~~k-~~~~~~~~L~g~G~a~ly~t~~aa~~~y~l~~~~~ 92 (745)
T PF10101_consen 14 LLLGVVFLLKYAIDAGWLGPAVRVALGAALGLALLAAGERLRRK-GYRAFAQALAGGGIAVLYLTVFAAYHLYGLIPPPV 92 (745)
T ss_pred HHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556688888888899898866655554444333222222222 112223333333222222 222233445577777
Q ss_pred HHHhhhchHHHHHHHHHH
Q 019439 110 VTLLDCCTIAWAIVLTWL 127 (341)
Q Consensus 110 ~~~l~~~~pi~~~ll~~l 127 (341)
+-++.......+..++..
T Consensus 93 af~~~~~v~~~~~~la~r 110 (745)
T PF10101_consen 93 AFALLALVTAAAVALALR 110 (745)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666555555555553
No 173
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=21.21 E-value=3.5e+02 Score=19.98 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=13.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFF 189 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~ 189 (341)
..-..+.+.++++|+.-.+.....
T Consensus 52 ~Rt~~FIlicAFGYGll~v~~tP~ 75 (106)
T PF11872_consen 52 LRTLAFILICAFGYGLLIVWLTPL 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554444
No 174
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.47 E-value=49 Score=26.32 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=9.6
Q ss_pred hheeeeeeeeccccCCCC
Q 019439 294 IVVIGLIIYSTTEKDLNP 311 (341)
Q Consensus 294 li~~g~~l~~~~~~~~~~ 311 (341)
+.++|++-|...++....
T Consensus 8 ~~~~~~w~yr~rpr~p~~ 25 (156)
T PF08372_consen 8 LFLIGLWNYRFRPRHPPH 25 (156)
T ss_pred HHHHHHhccccCCCCCCC
Confidence 345666666555444443
No 175
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=20.03 E-value=5e+02 Score=21.36 Aligned_cols=71 Identities=15% Similarity=0.033 Sum_probs=41.1
Q ss_pred HHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcCCCCCCCCCcchHHhHHHHHHHHHHHHHHHH
Q 019439 110 VTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSDAGGDGGGSRPLLGDVLVIAGTIFFATSNVG 185 (341)
Q Consensus 110 ~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~ 185 (341)
.+++....-......-.+..||+++.- ..|.+...++..+....++ ..+....|+......+..+..+.+.
T Consensus 29 ~aliaA~~~a~~~~v~RL~r~~~~~~a-~~gl~gV~i~a~~A~~tG~----A~~~Fl~gi~~n~~~~~~~l~S~lv 99 (187)
T PF11361_consen 29 PALIAALAVAVVIVVWRLVRRESVQPA-LSGLFGVAISAAIAWRTGS----AKDFFLPGIWTNAVYAVVFLVSVLV 99 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHHHHCC----hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555566667777877753 6666666666666555542 3445566666666665555555543
Done!