Query 019439
Match_columns 341
No_of_seqs 200 out of 1812
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 2E-10 6.9E-15 88.0 5.2 66 241-306 39-105 (137)
2 3b5d_A Multidrug transporter E 98.6 6.2E-07 2.1E-11 66.1 11.9 69 87-155 35-105 (110)
3 3b5d_A Multidrug transporter E 98.6 5.9E-07 2E-11 66.3 10.6 66 241-306 39-105 (110)
4 2i68_A Protein EMRE; transmemb 98.5 2.3E-07 7.9E-12 70.9 7.9 70 86-155 34-105 (137)
5 3l1l_A Arginine/agmatine antip 56.8 21 0.00071 32.1 6.5 24 287-310 409-432 (445)
6 3rko_J NADH-quinone oxidoreduc 55.6 31 0.0011 27.2 6.3 34 273-306 127-162 (184)
7 2hac_A T-cell surface glycopro 18.8 86 0.003 16.8 2.1 24 112-135 7-30 (33)
8 3o7q_A L-fucose-proton symport 11.9 6.8E+02 0.023 21.3 16.1 47 9-55 250-298 (438)
9 2l2t_A Receptor tyrosine-prote 10.6 47 0.0016 19.3 -0.3 7 298-304 29-35 (44)
10 1pw4_A Glycerol-3-phosphate tr 9.4 8.4E+02 0.029 20.8 21.3 17 177-193 299-315 (451)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.03 E-value=2e-10 Score=88.00 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhh-hhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLS-LLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
++..+|.++.+++++.+...+... ..+.|+++.+++++++||++++.+++|+++|++|+++.+..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 555558999999999999877776 789999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.62 E-value=6.2e-07 Score=66.13 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=61.0
Q ss_pred HHHHHHHH-HHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 87 LGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 87 ~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
.+.+.... .+++..++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|+.++...+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444 7788999999999999988 799999999999999999999999999999999999987643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.57 E-value=5.9e-07 Score=66.28 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhh-hhhhHHHHHHHHHHHhccccchhhhhHHhhheeeeeeeeccc
Q 019439 241 SSFMFYTLAPFVLKLSGATMFNLS-LLTADMWAVVFRICFYHQKVDWLYFLAFGIVVIGLIIYSTTE 306 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 306 (341)
+...++.++..++++.+...+... ..+.|+++.+++++++||+++..+++|..+|++|+++.+..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444557888899999998887666 788999999999999999999999999999999999986543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=2.3e-07 Score=70.94 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=50.8
Q ss_pred HHHHHHHHH-HHHHHHhhhccchhHHHHh-hhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHhhcC
Q 019439 86 LLGFVDVQG-NFLVNKAYQFSSITSVTLL-DCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVLLSD 155 (341)
Q Consensus 86 ~~g~~~~~~-~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~~~~ 155 (341)
+.+++.... .++++.++++.|++.+..+ .++.|++++++++++++|++++.+++|+.++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344554544 7799999999999999988 899999999999999999999999999999999999998654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=56.79 E-value=21 Score=32.10 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=16.6
Q ss_pred hhhhHHhhheeeeeeeeccccCCC
Q 019439 287 LYFLAFGIVVIGLIIYSTTEKDLN 310 (341)
Q Consensus 287 ~~~~G~~li~~g~~l~~~~~~~~~ 310 (341)
..+.|..+++.|+.++...+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455677888888888876555443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=55.55 E-value=31 Score=27.15 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=24.7
Q ss_pred HHHHHHHhccccchhhhhHHhhhe--eeeeeeeccc
Q 019439 273 VVFRICFYHQKVDWLYFLAFGIVV--IGLIIYSTTE 306 (341)
Q Consensus 273 ~l~~~~~~~e~~~~~~~~G~~li~--~g~~l~~~~~ 306 (341)
--+|..++++-.-+.++.+..|.+ +|.+...+++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457778889999999999988875 3555544433
No 7
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=18.85 E-value=86 Score=16.78 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=15.8
Q ss_pred HhhhchHHHHHHHHHHHhhcccch
Q 019439 112 LLDCCTIAWAIVLTWLFLGTRYSL 135 (341)
Q Consensus 112 ~l~~~~pi~~~ll~~l~l~e~~~~ 135 (341)
++...--+...++..++.|||+..
T Consensus 7 iLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 7 LLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444556677777888888765
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=11.89 E-value=6.8e+02 Score=21.32 Aligned_cols=47 Identities=9% Similarity=-0.115 Sum_probs=21.1
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH-HHhcCCCchHHHH
Q 019439 9 SWWRSHVTLRTLYLLFLGQLVSFT-LALMSFTSSL-IADLGVDAPVTQS 55 (341)
Q Consensus 9 ~~~~~~~~~~~~~g~~~~~~~al~-~~~~~~~~~~-l~~~~~~~p~~~~ 55 (341)
++++.+|+++.+...+........ .....+...+ +.+.-..++....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 444555666655554443333322 2223455556 5444233444333
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.61 E-value=47 Score=19.26 Aligned_cols=7 Identities=14% Similarity=0.467 Sum_probs=2.6
Q ss_pred eeeeeec
Q 019439 298 GLIIYST 304 (341)
Q Consensus 298 g~~l~~~ 304 (341)
+.+++.+
T Consensus 29 ~~~~~~R 35 (44)
T 2l2t_A 29 TFAVYVR 35 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=9.40 E-value=8.4e+02 Score=20.77 Aligned_cols=17 Identities=6% Similarity=-0.158 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhcC
Q 019439 177 IFFATSNVGEEFFVKKK 193 (341)
Q Consensus 177 ~~~a~~~v~~~~~~~~~ 193 (341)
++..+..+...+..++.
T Consensus 299 ~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444554444
Done!