Query 019439
Match_columns 341
No_of_seqs 200 out of 1812
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 16:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 69.9 27 0.0019 28.6 13.8 39 167-206 61-99 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 37.7 18 0.0013 16.6 2.8 18 167-184 3-20 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 34.2 70 0.0051 24.4 7.6 66 83-152 4-69 (248)
4 d1iwga8 f.35.1.1 (A:513-566,A: 16.7 1.8E+02 0.013 21.3 6.9 28 270-297 95-122 (222)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 7.3 4.8E+02 0.035 20.0 21.7 10 53-62 118-127 (447)
6 d2yvxa3 f.57.1.1 (A:276-448) M 4.6 3.7E+02 0.027 18.7 3.9 17 16-32 82-98 (173)
7 d1q90a3 f.23.23.1 (A:248-292) 3.6 3.2E+02 0.023 14.3 2.0 27 166-192 5-31 (45)
8 d2nwwa1 f.49.1.1 (A:12-416) Pr 2.8 1.1E+03 0.079 18.3 6.3 43 17-62 3-45 (405)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 2.4 4.5E+02 0.033 12.8 3.7 17 19-35 17-33 (37)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 1.1E+03 0.077 17.2 8.3 31 84-114 55-89 (248)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=69.90 E-value=27 Score=28.56 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHhHHHH
Q 019439 167 LGDVLVIAGTIFFATSNVGEEFFVKKKDRVEVVCMIGVYG 206 (341)
Q Consensus 167 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 206 (341)
.|.+.. ...+.+++......+..++.+.........+..
T Consensus 61 ~g~~~s-~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 61 LGFALS-GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 454433 234455566666666666666555444333333
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=37.72 E-value=18 Score=16.64 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 019439 167 LGDVLVIAGTIFFATSNV 184 (341)
Q Consensus 167 ~G~~~~l~a~~~~a~~~v 184 (341)
+|.+..-+++++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 678888888999988764
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=34.21 E-value=70 Score=24.44 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHhhhchHHHHHHHHHHHhhcccchhhHHHHHHHHHhhHHHh
Q 019439 83 WYLLLGFVDVQGNFLVNKAYQFSSITSVTLLDCCTIAWAIVLTWLFLGTRYSLWQLLGAALCVLGLGLVL 152 (341)
Q Consensus 83 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~l~l~e~~~~~~~ig~~l~~~Gv~l~~ 152 (341)
++.++|++..+..+.....+....-..+.+ ..+.+.++.++++.+|.-+++++-=.+++..++.+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~ 69 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLF 69 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHHHHHHHHHH
Confidence 345666666666555555555444444433 455677777888888888888877777666665553
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.70 E-value=1.8e+02 Score=21.25 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccccchhhhhHHhhhee
Q 019439 270 MWAVVFRICFYHQKVDWLYFLAFGIVVI 297 (341)
Q Consensus 270 v~~~l~~~~~~~e~~~~~~~~G~~li~~ 297 (341)
+.+.+.+..+.+.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4556667778899999999888777644
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.27 E-value=4.8e+02 Score=20.02 Aligned_cols=10 Identities=0% Similarity=-0.001 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 019439 53 TQSAFAYFSL 62 (341)
Q Consensus 53 ~~~~~r~~~~ 62 (341)
.+...|++..
T Consensus 118 ~~~~~~~~~g 127 (447)
T d1pw4a_ 118 VMFVLLFLCG 127 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444455433
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.57 E-value=3.7e+02 Score=18.75 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 019439 16 TLRTLYLLFLGQLVSFT 32 (341)
Q Consensus 16 ~~~~~~g~~~~~~~al~ 32 (341)
.|+...|++.|..+++.
T Consensus 82 ~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 82 LKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777666654
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.61 E-value=3.2e+02 Score=14.29 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=16.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 019439 166 LLGDVLVIAGTIFFATSNVGEEFFVKK 192 (341)
Q Consensus 166 ~~G~~~~l~a~~~~a~~~v~~~~~~~~ 192 (341)
..|.+..+.+.+..-+..++-||-.++
T Consensus 5 v~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665444
No 8
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.80 E-value=1.1e+03 Score=18.29 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 019439 17 LRTLYLLFLGQLVSFTLALMSFTSSLIADLGVDAPVTQSAFAYFSL 62 (341)
Q Consensus 17 ~~~~~g~~~~~~~al~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~ 62 (341)
+|.+.++.+|.++.+.+....+.... .....+..-.|.|.+-.
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~---~~~l~~~g~lFi~lL~m 45 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAV---HTYVKPFGDLFVRLLKM 45 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHH---TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHH---HHHHHHHHHHHHHHHHH
Confidence 45566666666665554322221111 12345555566665433
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.41 E-value=4.5e+02 Score=12.84 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019439 19 TLYLLFLGQLVSFTLAL 35 (341)
Q Consensus 19 ~~~g~~~~~~~al~~~~ 35 (341)
...|+++-++++++++.
T Consensus 17 Ly~GlLlifvl~vLFss 33 (37)
T d2axtl1 17 LYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466666666665543
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.37 E-value=1.1e+03 Score=17.18 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH----HHHHHHhhhccchhHHHHhh
Q 019439 84 YLLLGFVDVQG----NFLVNKAYQFSSITSVTLLD 114 (341)
Q Consensus 84 ~~~~g~~~~~~----~~~~~~al~~~~~~~~~~l~ 114 (341)
++..|++..+. ...|...+.+++-+..-.+.
T Consensus 55 yi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~lt 89 (248)
T d2r6gf1 55 YVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLT 89 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBC
T ss_pred hhhhHHHHHHHHHHHhheeEEEEEEEEcCCCcccc
Confidence 44455444433 33556666666665544433
Done!