BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019440
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 15/155 (9%)
Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
KR RGRPPG+ K + + S +A HV+ V+ G DI + +++++ R +
Sbjct: 86 KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142
Query: 184 VLSANGAISTATLRQPSS---------SGGSVTYEGRFEILCLSGSYLLSGNGGSRNRSG 234
VL NG +S TLRQP + GG VT GRFEIL L+G+ L + +G
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPP---PAPPGAG 199
Query: 235 GLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSF 269
GLS+ LA G+V+GG V LIA+ V ++ SF
Sbjct: 200 GLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234
>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
GN=glmU PE=3 SV=1
Length = 621
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 164 GEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYL 222
G+D+ +L F++Q P +A VLSA G++S ATLR + + E R EIL LSGS
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536
Query: 223 LSGNGGSRNRSGGLSVSLASPDGRVIGGGVG-GMLIAANNVQVIVGSF 269
G L +++A GR GG + G LI V+ S
Sbjct: 537 PDGV--------HLHLAVADAQGRTWGGHLRPGCLIYTTAEIVLADSL 576
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 164 GEDIAMKLLSFSQQGP-RAICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGS 220
G+D+ +L ++Q P +A VLSA G++S ATLR +G + E R EIL LSGS
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGS 536
>sp|P55098|PEX2_MOUSE Peroxisome biogenesis factor 2 OS=Mus musculus GN=Pex2 PE=2 SV=1
Length = 305
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 261 NVQVIVGSFLWGGPKMKNKKGEASEGVRDSEHQSVENPVTPTTAPSSQN---LTPTSSVG 317
V+ + FLW + +K + V + +H++ +P P P S+N L ++G
Sbjct: 55 EVKAFLWLFLWRFT-IYSKNATVGQSVLNIQHKNDSSP-NPVYQPPSKNQKLLYAVCTIG 112
Query: 318 GVWAGSRQMDMMRNAHV 334
G W R D+ RN H+
Sbjct: 113 GRWLEERCYDLFRNRHL 129
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 37.4 bits (85), Expect = 0.18, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 24 SGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGS------TIGSTLSVDPSSAISPHGVNVT 77
S +G+ S + P P +N S S +G I +SV A P G
Sbjct: 1161 SETGSNASTNSQPS-SPATNKSRDVSSEVGARENEENPVITKAVSVKKEEAAQPSG---- 1215
Query: 78 ASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPP 131
RKR P G + SVS +PS + P P K RGRPP
Sbjct: 1216 ------------RKRAAPASDGTENSVSS--NPSAGSQP----PLNKPRRGRPP 1251
>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc4 PE=1 SV=1
Length = 972
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 34 GSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRG 93
G P +HPL P +Q + G + + +D + I A++ + +P KR RG
Sbjct: 152 GRPRLHPL--PVVQPSVDEGTTQNNLQMGLDEPNIIEGFA---EGHANLSELKP-KRGRG 205
Query: 94 RPRKYGPD--GSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSS 141
RPRK P+ S LSP V + P KRGRGRPP +Q++++
Sbjct: 206 RPRKIKPEEGSSSQNGLSPLV------VLPA-KRGRGRPPLHRSEQKIAN 248
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 20/68 (29%)
Query: 90 RKRGRPRKYGP----DGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGES 145
R+RGRPRKY P +GS P KR RGRPP + L +
Sbjct: 101 RRRGRPRKYPPKPIDEGS----------------EPIIKRKRGRPPKIKSSSPSTKLDDP 144
Query: 146 LSGSAGMG 153
L G G
Sbjct: 145 LKPKRGRG 152
>sp|O33641|ICSP_SHIFL Outer membrane protease IcsP OS=Shigella flexneri GN=icsP PE=2 SV=2
Length = 315
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 209 EGRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDG-RVIG 249
E R+ + GSY+ S NGGSRN+ G A P G R IG
Sbjct: 156 ESRYSFNAMGGSYIYSENGGSRNKKG------AHPSGERTIG 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,207,562
Number of Sequences: 539616
Number of extensions: 6386471
Number of successful extensions: 18288
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 17786
Number of HSP's gapped (non-prelim): 642
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)