Query 019440
Match_columns 341
No_of_seqs 222 out of 461
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.9 1.9E-26 6.4E-31 198.1 14.0 115 154-277 2-117 (142)
2 2hx0_A Putative DNA-binding pr 99.9 2.5E-26 8.5E-31 199.8 14.4 120 149-277 13-133 (154)
3 2dt4_A Hypothetical protein PH 99.9 1.1E-26 3.7E-31 199.0 11.0 118 155-278 10-130 (143)
4 2h6l_A Hypothetical protein; N 99.9 3.8E-26 1.3E-30 196.2 10.2 116 155-277 10-128 (146)
5 3htn_A Putative DNA binding pr 99.9 3E-25 1E-29 192.1 11.8 115 155-275 16-133 (149)
6 3hwu_A Putative DNA-binding pr 99.9 3.4E-22 1.2E-26 172.4 13.1 115 155-275 13-130 (147)
7 2ezd_A High mobility group pro 96.8 0.00063 2.2E-08 43.4 2.1 17 121-137 2-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 61.6 2.4 8.2E-05 35.3 1.0 14 88-101 3-16 (140)
9 4i95_A Putative uncharacterize 52.0 13 0.00045 32.2 3.9 34 181-216 37-70 (142)
10 4gzv_A Hypothetical protein; A 39.4 26 0.0009 30.3 3.9 34 181-216 37-70 (142)
11 1xv2_A ALDC, hypothetical prot 38.7 1.5E+02 0.0053 27.1 9.2 96 164-264 96-202 (237)
12 1t3g_A X-linked interleukin-1 37.8 22 0.00075 30.1 3.2 28 161-188 51-78 (159)
13 3fcg_A F1 capsule-anchoring pr 31.6 54 0.0018 26.1 4.3 43 191-247 26-73 (90)
14 1fyx_A TOLL-like receptor 2; b 27.2 30 0.001 28.7 2.2 36 153-188 34-71 (149)
15 2j67_A TOLL like receptor 10; 25.9 33 0.0011 29.7 2.3 29 160-188 73-101 (178)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=1.9e-26 Score=198.06 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=103.4
Q ss_pred ceEEEEEecCCchHHHHHHHHHHhCCc-cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEEeeceeeeCCCCCCCCC
Q 019440 154 FTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNGGSRNR 232 (341)
Q Consensus 154 f~phVIrV~~GEDV~~kI~~Faqq~~~-aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILSLSGT~~~~~~~~~~~~ 232 (341)
|++|++||++||||+++|.+||+++++ +.||++++|++++|+||+++.. .+++|+|+|||+||+|||.+. .
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-~------ 73 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-H------ 73 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-C------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-C------
Confidence 899999999999999999999999886 7999999999999999999974 478899999999999999995 1
Q ss_pred CCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440 233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK 277 (341)
Q Consensus 233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~ 277 (341)
.||||+|+|.||+|+||||.+..++..++||++..|....+.++
T Consensus 74 -~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~ 117 (142)
T 2p6y_A 74 -CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTRE 117 (142)
T ss_dssp -EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEE
T ss_pred -CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEe
Confidence 59999999999999999999766667889999999988667743
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=2.5e-26 Score=199.85 Aligned_cols=120 Identities=18% Similarity=0.330 Sum_probs=107.3
Q ss_pred CCCCCceEEEEEecCCchHHHHHHHHHHhCCc-cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEEeeceeeeCCCC
Q 019440 149 SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR-AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILCLSGSYLLSGNG 227 (341)
Q Consensus 149 s~g~~f~phVIrV~~GEDV~~kI~~Faqq~~~-aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILSLSGT~~~~~~~ 227 (341)
+.+..+++|+|||++||||+++|.+||+++++ +.|||+++|+|++|+||+++... +++|+|+|||+||+|||++..
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~~-- 89 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTG-- 89 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTE--
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCCC--
Confidence 45678999999999999999999999998876 88999999999999999999744 789999999999999999961
Q ss_pred CCCCCCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440 228 GSRNRSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK 277 (341)
Q Consensus 228 ~~~~~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~ 277 (341)
.||||+|+|.||+|+||||.+.+++..++||+|..|....+.++
T Consensus 90 ------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~ 133 (154)
T 2hx0_A 90 ------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQ 133 (154)
T ss_dssp ------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEE
T ss_pred ------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEe
Confidence 59999999999999999999766666889999999987667643
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.1e-26 Score=199.03 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=105.3
Q ss_pred eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (341)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~ 231 (341)
++|++||++||||+++|.+||+++++..|+++++|++++|+||+++... ..++|+|+|||+||+|||.+.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---- 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---- 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence 6999999999999999999999999877777999999999999998644 368899999999999999997542
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCccC
Q 019440 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMKN 278 (341)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~~ 278 (341)
++.||||+|+|.||+|+||||...+ .+ ++||++..|.+..+.++.
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~ 130 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence 6789999999999999999999887 55 799999999987787553
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=3.8e-26 Score=196.23 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=103.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (341)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~ 231 (341)
++|+|||++||||+++|.+||+++++..|+|+++|+|++|+||+++... .+++|+|+|||+||+|||++.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~---- 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---- 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence 5999999999999999999999998766666999999999999998755 378999999999999999997542
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCCcc
Q 019440 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPKMK 277 (341)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k~~ 277 (341)
++.||||+|+ .||+|+||||.+.+| .++||++.+|....+.++
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~ 128 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERA 128 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEE
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEe
Confidence 6789999999 999999999998886 689999999998777753
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.92 E-value=3e-25 Score=192.12 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=102.0
Q ss_pred eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (341)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~ 231 (341)
+.+++||++||||+++|.+||+++++..|+++++|++++|+||+++... ..++|+|+|||+||+|||++.++ .
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 6899999999999999999999999987778999999999999987543 26799999999999999999754 2
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCC
Q 019440 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPK 275 (341)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k 275 (341)
++.||||+|+|+||+|+||||... ++..++||+|..+.. .+.
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~ 133 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RIS 133 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCE
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeE
Confidence 678999999999999999999987 556779999998866 454
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.88 E-value=3.4e-22 Score=172.40 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=99.8
Q ss_pred eEEEEEecCCchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCC---CceeeeeeeEEEEeeceeeeCCCCCCCC
Q 019440 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG---GSVTYEGRFEILCLSGSYLLSGNGGSRN 231 (341)
Q Consensus 155 ~phVIrV~~GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~---~tvtyeG~FEILSLSGT~~~~~~~~~~~ 231 (341)
+-+++||++||||+++|.+||+++++..++++++|++++++|+.++... ...+++ +|||+||+||+++.++ .
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 3589999999999999999999999988888999999999999987543 256788 8999999999998764 2
Q ss_pred CCCceEEEEeCCCCeEEeeecCcceEeecceEEEEEEccCCCCC
Q 019440 232 RSGGLSVSLASPDGRVIGGGVGGMLIAANNVQVIVGSFLWGGPK 275 (341)
Q Consensus 232 ~~~hLhISLAg~dGqViGGhV~G~LIAAtpVqVVvgSF~~~~~k 275 (341)
++.|||++++|.+|+|+||||....|.+.++||+|..+.. .+.
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~ 130 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLD 130 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCB
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEE
Confidence 7789999999999999999999886665689999997643 554
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.77 E-value=0.00063 Score=43.39 Aligned_cols=17 Identities=59% Similarity=0.954 Sum_probs=14.8
Q ss_pred CcCcCCCCCCCCCCCCc
Q 019440 121 PTQKRGRGRPPGTGRKQ 137 (341)
Q Consensus 121 ~~~kr~RGRPpGS~nK~ 137 (341)
+..||+||||.|||||.
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 34799999999999994
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=61.58 E-value=2.4 Score=35.31 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCCC
Q 019440 88 VKRKRGRPRKYGPD 101 (341)
Q Consensus 88 ~KkKRGRPRKY~~d 101 (341)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 48999999999876
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=52.04 E-value=13 Score=32.25 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=29.9
Q ss_pred cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEE
Q 019440 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILC 216 (341)
Q Consensus 181 aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILS 216 (341)
.+=|||.-|++.|++++. + ++.+++.+|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 577999999999999993 3 467999999999998
No 10
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=39.43 E-value=26 Score=30.33 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=29.0
Q ss_pred cEEEEeeeceeeeEEEeCCCCCCCceeeeeeeEEEE
Q 019440 181 AICVLSANGAISTATLRQPSSSGGSVTYEGRFEILC 216 (341)
Q Consensus 181 aicILSa~GaVSnVTLRqp~s~~~tvtyeG~FEILS 216 (341)
..=|||.-|+..|+++..-. +.+++..|.|||.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~~--~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPGA--DAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTTS--CCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCCC--CcEEEEeEEEEecC
Confidence 57799999999999995532 56899999999998
No 11
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=38.73 E-value=1.5e+02 Score=27.13 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHhCCccEEEEeeeceeeeEEEeCCCCCCC-------ceeeeeeeEEEEeece----eeeCCCCCCCCC
Q 019440 164 GEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGG-------SVTYEGRFEILCLSGS----YLLSGNGGSRNR 232 (341)
Q Consensus 164 GEDV~~kI~~Faqq~~~aicILSa~GaVSnVTLRqp~s~~~-------tvtyeG~FEILSLSGT----~~~~~~~~~~~~ 232 (341)
-+++-+.|.+.. ...-.|.+-..|..++|+.|--..... .+.-+=.|+.--.+|| ++|.--.+- -
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~ 171 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--G 171 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--B
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--C
Confidence 344455554443 445678889999999999997643221 1112223444444444 455432221 1
Q ss_pred CCceEEEEeCCCCeEEeeecCcceEeecceEE
Q 019440 233 SGGLSVSLASPDGRVIGGGVGGMLIAANNVQV 264 (341)
Q Consensus 233 ~~hLhISLAg~dGqViGGhV~G~LIAAtpVqV 264 (341)
-.++|+-+.+.|-+ +||||.+--+....|+|
T Consensus 172 v~G~HlHFisdDr~-~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 172 SAGFHIHFADDERA-YGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp CSEEEEEEEETTSS-CEEEEEEEEEEEEEEEE
T ss_pred CceeEEEEEcCCCC-CCcceEEEEecceEEEE
Confidence 23677777765544 89999988776666665
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=37.79 E-value=22 Score=30.09 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=25.5
Q ss_pred ecCCchHHHHHHHHHHhCCccEEEEeee
Q 019440 161 VAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (341)
Q Consensus 161 V~~GEDV~~kI~~Faqq~~~aicILSa~ 188 (341)
+.+|++|.+.|.+..++..+.|+|||-.
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 6799999999999999999999999863
No 13
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=31.62 E-value=54 Score=26.06 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=29.0
Q ss_pred eeeEEEeCCCCCCCceeee-----eeeEEEEeeceeeeCCCCCCCCCCCceEEEEeCCCCeE
Q 019440 191 ISTATLRQPSSSGGSVTYE-----GRFEILCLSGSYLLSGNGGSRNRSGGLSVSLASPDGRV 247 (341)
Q Consensus 191 VSnVTLRqp~s~~~tvtye-----G~FEILSLSGT~~~~~~~~~~~~~~hLhISLAg~dGqV 247 (341)
=+.|+|+|- +.+.|+ |+|||--|.-+ . -.+-|.|.+-+.||++
T Consensus 26 ~A~V~v~qn----G~~iy~~~VppGpF~I~dl~~~----~------~~Gdl~V~v~eadG~~ 73 (90)
T 3fcg_A 26 QARVEVLRD----GYTVSNELVPSGPFELANLPLG----G------GSGELKVIIHESDGTK 73 (90)
T ss_dssp SEEEEEESS----SCEEEEEEECSEEEEECCCC-------------CCEEEEEEEECTTSCE
T ss_pred CcEEEEEEC----CEEEEEeEeCCCCeEEcCCccc----C------CceeEEEEEEECCCCE
Confidence 367888884 344554 99999766311 1 1247999999999976
No 14
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=27.16 E-value=30 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.0
Q ss_pred CceEEEE--EecCCchHHHHHHHHHHhCCccEEEEeee
Q 019440 153 GFTPHVI--TVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (341)
Q Consensus 153 ~f~phVI--rV~~GEDV~~kI~~Faqq~~~aicILSa~ 188 (341)
+++..+= .+.+|+++.+.|.+-.++-.+.|+|||-.
T Consensus 34 g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 34 PFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp CCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 4554332 37899999999999999999999999864
No 15
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=25.89 E-value=33 Score=29.66 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.8
Q ss_pred EecCCchHHHHHHHHHHhCCccEEEEeee
Q 019440 160 TVAVGEDIAMKLLSFSQQGPRAICVLSAN 188 (341)
Q Consensus 160 rV~~GEDV~~kI~~Faqq~~~aicILSa~ 188 (341)
.+.+|++|.+.|.+..++..+.|+|||-.
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37899999999999999888999999864
Done!