Your job contains 1 sequence.
>019441
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGC
GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT
EAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR
KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGG
EGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH
SAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019441
(341 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2099986 - symbol:AT3G55580 species:3702 "Arabi... 839 1.6e-92 2
UNIPROTKB|E1B8U7 - symbol:RCCD1 "Uncharacterized protein"... 123 2.3e-11 2
UNIPROTKB|E2R5W9 - symbol:RCCD1 "Uncharacterized protein"... 118 3.6e-11 2
UNIPROTKB|G3V2I3 - symbol:RCCD1 "RCC1 domain-containing p... 110 9.1e-10 2
UNIPROTKB|A6NED2 - symbol:RCCD1 "RCC1 domain-containing p... 110 9.3e-10 2
RGD|1309901 - symbol:Rccd1 "RCC1 domain containing 1" spe... 109 1.3e-09 2
UNIPROTKB|F1RMH6 - symbol:RCCD1 "Uncharacterized protein"... 114 1.7e-09 2
TAIR|locus:2163986 - symbol:UVR8 "UVB-RESISTANCE 8" speci... 118 2.5e-09 2
MGI|MGI:2444156 - symbol:Rccd1 "RCC1 domain containing 1"... 98 3.6e-08 2
UNIPROTKB|F1N7C1 - symbol:HERC6 "Uncharacterized protein"... 104 8.3e-08 3
FB|FBgn0031107 - symbol:HERC2 "HECT and RLD domain contai... 123 9.9e-08 3
TAIR|locus:2076889 - symbol:AT3G02510 "AT3G02510" species... 120 1.5e-07 2
UNIPROTKB|F1RW66 - symbol:HERC3 "Uncharacterized protein"... 123 1.8e-07 2
TAIR|locus:2205794 - symbol:AT1G27060 species:3702 "Arabi... 90 1.9e-07 3
TAIR|locus:2156233 - symbol:RUG2 "RCC1/UVR8/GEF-like 2" s... 116 2.1e-07 2
UNIPROTKB|A2VDP7 - symbol:HERC3 "HERC3 protein" species:9... 119 5.1e-07 2
UNIPROTKB|Q15034 - symbol:HERC3 "Probable E3 ubiquitin-pr... 119 5.1e-07 2
UNIPROTKB|F1NBC5 - symbol:HERC3 "Uncharacterized protein"... 119 5.1e-07 2
RGD|1307803 - symbol:Herc3 "HECT and RLD domain containin... 117 6.1e-07 2
TAIR|locus:2146142 - symbol:AT5G16040 "AT5G16040" species... 112 6.3e-07 2
UNIPROTKB|E1C514 - symbol:HERC3 "Uncharacterized protein"... 118 6.6e-07 2
RGD|1307989 - symbol:Herc2 "HECT and RLD domain containin... 118 9.1e-07 3
UNIPROTKB|G3MX12 - symbol:HERC2 "Uncharacterized protein"... 121 9.3e-07 3
UNIPROTKB|F1M560 - symbol:Herc2 "Protein Herc2" species:1... 118 9.4e-07 3
UNIPROTKB|E2RDC2 - symbol:HERC2 "Uncharacterized protein"... 121 9.8e-07 3
UNIPROTKB|E1B782 - symbol:HERC2 "Uncharacterized protein"... 121 9.9e-07 3
UNIPROTKB|E2RMB0 - symbol:HERC3 "Uncharacterized protein"... 116 1.1e-06 2
ZFIN|ZDB-GENE-070718-6 - symbol:herc2 "hect domain and RL... 121 1.5e-06 3
UNIPROTKB|F1NDJ4 - symbol:RCCD1 "Uncharacterized protein"... 94 1.7e-06 2
UNIPROTKB|D4ACN3 - symbol:Herc2 "Protein Herc2" species:1... 118 2.0e-06 2
UNIPROTKB|E1BW48 - symbol:HERC2 "Uncharacterized protein"... 118 2.0e-06 4
UNIPROTKB|E1C8K2 - symbol:HERC2 "Uncharacterized protein"... 118 2.0e-06 4
UNIPROTKB|O95714 - symbol:HERC2 "E3 ubiquitin-protein lig... 118 2.1e-06 2
MGI|MGI:103234 - symbol:Herc2 "hect (homologous to the E6... 118 2.1e-06 2
UNIPROTKB|F1N1N9 - symbol:HERC5 "Uncharacterized protein"... 101 2.4e-06 2
TAIR|locus:2159295 - symbol:RUG3 "RCC1/UVR8/GEF-like 3" s... 97 2.6e-06 3
UNIPROTKB|E2RFW5 - symbol:HERC4 "Uncharacterized protein"... 101 3.1e-06 3
UNIPROTKB|Q9UII4 - symbol:HERC5 "E3 ISG15--protein ligase... 94 3.2e-06 2
UNIPROTKB|E2RFV1 - symbol:HERC4 "Uncharacterized protein"... 101 3.2e-06 3
UNIPROTKB|E1BAV2 - symbol:HERC4 "Uncharacterized protein"... 101 4.0e-06 3
MGI|MGI:1914595 - symbol:Herc4 "hect domain and RLD 4" sp... 100 4.1e-06 3
RGD|1310971 - symbol:Herc4 "HECT and RLD domain containin... 100 4.1e-06 3
FB|FBgn0035207 - symbol:CG9153 species:7227 "Drosophila m... 99 4.2e-06 3
UNIPROTKB|Q5GLZ8 - symbol:HERC4 "Probable E3 ubiquitin-pr... 101 5.1e-06 3
TAIR|locus:504956339 - symbol:RUG1 "AT5G08710" species:37... 97 6.3e-06 2
UNIPROTKB|F1NCH3 - symbol:HERC4 "Uncharacterized protein"... 98 8.4e-06 3
DICTYBASE|DDB_G0269934 - symbol:DDB_G0269934 "Ras GTPase ... 102 9.5e-06 2
UNIPROTKB|Q9N1T2 - symbol:RPGR "X-linked retinitis pigmen... 87 1.2e-05 3
UNIPROTKB|O95199 - symbol:RCBTB2 "RCC1 and BTB domain-con... 131 1.4e-05 1
UNIPROTKB|F1PV11 - symbol:RCBTB1 "Uncharacterized protein... 104 1.9e-05 2
UNIPROTKB|I3LCV3 - symbol:RCBTB1 "Uncharacterized protein... 104 2.2e-05 2
MGI|MGI:1918580 - symbol:Rcbtb1 "regulator of chromosome ... 103 2.4e-05 2
MGI|MGI:1917200 - symbol:Rcbtb2 "regulator of chromosome ... 129 2.4e-05 1
RGD|1308467 - symbol:Rcbtb1 "regulator of chromosome cond... 102 3.1e-05 2
UNIPROTKB|Q8NDN9 - symbol:RCBTB1 "RCC1 and BTB domain-con... 102 3.1e-05 2
UNIPROTKB|E1BKF7 - symbol:RCBTB1 "Uncharacterized protein... 102 3.1e-05 2
UNIPROTKB|F1PBB3 - symbol:HERC6 "Uncharacterized protein"... 95 3.2e-05 3
UNIPROTKB|E1BVG2 - symbol:RCBTB1 "Uncharacterized protein... 100 4.1e-05 2
ZFIN|ZDB-GENE-090313-139 - symbol:herc3 "hect domain and ... 104 5.9e-05 2
UNIPROTKB|H0YEL8 - symbol:SERGEF "Secretion-regulating gu... 99 8.0e-05 2
TAIR|locus:2165770 - symbol:AT5G42140 "AT5G42140" species... 99 8.6e-05 2
UNIPROTKB|F1S098 - symbol:HERC1 "Uncharacterized protein"... 106 8.9e-05 3
UNIPROTKB|Q15751 - symbol:HERC1 "Probable E3 ubiquitin-pr... 106 8.9e-05 3
UNIPROTKB|E2QYQ5 - symbol:HERC1 "Uncharacterized protein"... 106 8.9e-05 3
UNIPROTKB|F1MNS0 - symbol:HERC1 "Uncharacterized protein"... 106 0.00011 3
TAIR|locus:505006603 - symbol:AT5G12350 "AT5G12350" speci... 91 0.00013 2
ZFIN|ZDB-GENE-030131-7951 - symbol:rcbtb1 "regulator of c... 101 0.00013 2
UNIPROTKB|Q92834 - symbol:RPGR "X-linked retinitis pigmen... 79 0.00015 3
UNIPROTKB|F1PB99 - symbol:HERC5 "Uncharacterized protein"... 87 0.00015 2
ZFIN|ZDB-GENE-070912-423 - symbol:rpgra "retinitis pigmen... 87 0.00019 3
MGI|MGI:1914388 - symbol:Herc6 "hect domain and RLD 6" sp... 91 0.00021 3
ZFIN|ZDB-GENE-040426-2213 - symbol:rcc2 "regulator of chr... 100 0.00022 2
UNIPROTKB|F1NUG6 - symbol:Gga.50841 "Uncharacterized prot... 88 0.00026 3
UNIPROTKB|Q9P258 - symbol:RCC2 "Protein RCC2" species:960... 92 0.00027 3
UNIPROTKB|Q9UGK8 - symbol:SERGEF "Secretion-regulating gu... 99 0.00030 2
TAIR|locus:2079147 - symbol:AT3G47660 "AT3G47660" species... 86 0.00034 2
ZFIN|ZDB-GENE-040426-2216 - symbol:rcc1 "regulator of chr... 102 0.00034 2
UNIPROTKB|E1C4H7 - symbol:HERC1 "Uncharacterized protein"... 106 0.00035 3
MGI|MGI:1351630 - symbol:Sergef "secretion regulating gua... 99 0.00039 2
UNIPROTKB|C9J3R0 - symbol:RCC1 "Regulator of chromosome c... 97 0.00041 2
ZFIN|ZDB-GENE-081015-2 - symbol:rpgrb "retinitis pigmento... 86 0.00043 3
UNIPROTKB|I3LT85 - symbol:RCC1 "Uncharacterized protein" ... 102 0.00044 2
DICTYBASE|DDB_G0284187 - symbol:Dd5P2 "inositol 5-phospha... 87 0.00050 2
UNIPROTKB|F1NXI5 - symbol:SERGEF "Uncharacterized protein... 97 0.00060 2
UNIPROTKB|C9JRH2 - symbol:RCC1 "Regulator of chromosome c... 82 0.00065 3
RGD|1561739 - symbol:Herc6 "HECT and RLD domain containin... 91 0.00071 3
TAIR|locus:2035423 - symbol:AT1G19880 species:3702 "Arabi... 87 0.00074 2
ZFIN|ZDB-GENE-061220-11 - symbol:sergef "secretion regula... 99 0.00076 2
MGI|MGI:1919784 - symbol:Rcc2 "regulator of chromosome co... 93 0.00095 2
>TAIR|locus:2099986 [details] [associations]
symbol:AT3G55580 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR000408 Pfam:PF00415
EMBL:CP002686 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 EMBL:AL132975
HSSP:P18754 IPI:IPI00521720 PIR:T47697 RefSeq:NP_191117.1
UniGene:At.35013 ProteinModelPortal:Q9M2S1 SMR:Q9M2S1 PRIDE:Q9M2S1
EnsemblPlants:AT3G55580.1 GeneID:824723 KEGG:ath:AT3G55580
TAIR:At3g55580 InParanoid:Q9M2S1 OMA:HPIPCIE PhylomeDB:Q9M2S1
ProtClustDB:CLSN2685056 Genevestigator:Q9M2S1 Uniprot:Q9M2S1
Length = 488
Score = 839 (300.4 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 167/313 (53%), Positives = 207/313 (66%)
Query: 21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
VVYMWGYLPG SP++SP++SP+ ++ SWKDV GGGCGFA+AT+ESGKLITWGS
Sbjct: 32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
DD GQSY+TSGKHGETPEPFPLP E V KA AGWAHCV+VTE +VYTWGWREC+P+ +
Sbjct: 92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151
Query: 139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
V R+ S S GK+S+ T + R G E K+R+ S +++
Sbjct: 152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209
Query: 189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXX 247
+EN + D + PCLV+L PGV+I VAAGGRHTL LSD+
Sbjct: 210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLG 269
Query: 248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA 307
SR+++V +PH IPC+E ++ GK V SV G+ SYVK+IACGGRHSAV+TD
Sbjct: 270 SRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDT 329
Query: 308 GALLTFGWGLYGQ 320
GALLTFGWGLYGQ
Sbjct: 330 GALLTFGWGLYGQ 342
Score = 102 (41.0 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
VK I+CG RH+AV+TD G + +GW YGQ
Sbjct: 419 VKTISCGARHTAVITDEGRVFCWGWNKYGQ 448
Score = 50 (22.7 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325
++E+A G H+ + G + FG +GQ C
Sbjct: 365 IEEVAAGLWHTTCASSDGDVYAFGGNQFGQLGTGC 399
>UNIPROTKB|E1B8U7 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:DAAA02052163
IPI:IPI00710464 UniGene:Bt.111664 Ensembl:ENSBTAT00000024803
NextBio:20875558 Uniprot:E1B8U7
Length = 377
Score = 123 (48.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 38/120 (31%), Positives = 53/120 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG A GQ L G PEP L + A A GW H
Sbjct: 167 GAEHALLLDAAGQVFSWG-AGRHGQ--LGHGTLEAEPEPRLLEALQGLRMAEVAAGGW-H 222
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
V ++E G++Y WGW E A T+ G K + G+ S L + + AGE+
Sbjct: 223 SVCLSETGDIYIWGWNESGQLALPTKSLAEDG---KTTAGEASGLEEDGSEVKRGSAGED 279
Score = 101 (40.6 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK ++CG RH+AV+T G L T+GWG YGQ
Sbjct: 300 GSEAVK-VSCGSRHTAVLTRTGELYTWGWGKYGQ 332
Score = 54 (24.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSD 229
P L+ G+++ +VAAGG H++ LS+
Sbjct: 202 PRLLEALQGLRMAEVAAGGWHSVCLSE 228
Score = 49 (22.3 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 97 PF--PLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
PF PL + G H + + AG+V++WG
Sbjct: 150 PFYRPLAPTLRARRLELGAEHALLLDAAGQVFSWG 184
>UNIPROTKB|E2R5W9 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 OMA:ERPGAWF GeneTree:ENSGT00700000104312
EMBL:AAEX03002330 EMBL:AAEX03002329 Ensembl:ENSCAFT00000035362
Uniprot:E2R5W9
Length = 313
Score = 118 (46.6 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHC 116
G AL E+G++ +WG GQ L G PEP L V + AAG H
Sbjct: 103 GAEHALLLDEAGQVFSWGQGR-HGQ--LGHGSLEAEPEPRLLEALQGLPVAEVAAGGWHS 159
Query: 117 VSVTEAGEVYTWGWRE----CVPSAKVTRD 142
V V+E G++Y WGW E +PS + D
Sbjct: 160 VCVSETGDIYIWGWNESGQLALPSRSLAED 189
Score = 102 (41.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK +CG RH+AVVT G L T+GWG YGQ
Sbjct: 236 GADVVKA-SCGSRHTAVVTGTGELYTWGWGKYGQ 268
Score = 62 (26.9 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 28/108 (25%), Positives = 45/108 (41%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCG-GDSWKDVCGGGCGFALATSESGK--LITWGSADDE 81
+G PG+ + +LSP P + G G + V AL T E L+ G
Sbjct: 17 FGQAPGSGRGRQ-VLSPEPLQTPGSGADVRRVSASWSYTALVTRERPPPALLRPGPRVPG 75
Query: 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ + + P P L E + G H + + EAG+V++WG
Sbjct: 76 AKAPQPALR---PPAPRALAPELRARRLELGAEHALLLDEAGQVFSWG 120
>UNIPROTKB|G3V2I3 [details] [associations]
symbol:RCCD1 "RCC1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 EMBL:AC068831 HGNC:HGNC:30457
ProteinModelPortal:G3V2I3 SMR:G3V2I3 Ensembl:ENST00000555155
ArrayExpress:G3V2I3 Bgee:G3V2I3 Uniprot:G3V2I3
Length = 374
Score = 110 (43.8 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG GQ L G EP L +V A A GW H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGW-H 221
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
V V+E G++Y WGW E A TR+ G
Sbjct: 222 SVCVSETGDIYIWGWNESGQLALPTRNLAEDG 253
Score = 100 (40.3 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK +CG RH+AVVT G L T+GWG YGQ
Sbjct: 297 GSDAVKA-SCGSRHTAVVTRTGELYTWGWGKYGQ 329
Score = 60 (26.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
GQ L SG+ + P PL + + +A W++ VT G +
Sbjct: 18 GQE-LGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRL 60
Score = 54 (24.1 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 97 PF--PLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
PF PL E + G H + + AG+V++WG
Sbjct: 149 PFYRPLAPELRARQLELGAEHALLLDAAGQVFSWG 183
Score = 51 (23.0 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
L P L+ G+ + +VAAGG H++ +S+
Sbjct: 199 LEPRLLEALQGLVMAEVAAGGWHSVCVSE 227
>UNIPROTKB|A6NED2 [details] [associations]
symbol:RCCD1 "RCC1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 EMBL:CH471101 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 EMBL:AC068831
EMBL:BC113826 EMBL:BC140708 EMBL:BC140709 IPI:IPI00399158
RefSeq:NP_001017919.1 RefSeq:NP_291022.2 UniGene:Hs.655895
ProteinModelPortal:A6NED2 SMR:A6NED2 STRING:A6NED2
PhosphoSite:A6NED2 PaxDb:A6NED2 PRIDE:A6NED2
Ensembl:ENST00000394258 Ensembl:ENST00000556618 GeneID:91433
KEGG:hsa:91433 UCSC:uc002bqj.3 CTD:91433 GeneCards:GC15P091498
HGNC:HGNC:30457 HPA:HPA039683 HPA:HPA040776 neXtProt:NX_A6NED2
PharmGKB:PA142671092 eggNOG:NOG305770 HOGENOM:HOG000154085
HOVERGEN:HBG061852 InParanoid:A6NED2 OMA:ERPGAWF OrthoDB:EOG41NTMF
PhylomeDB:A6NED2 GenomeRNAi:91433 NextBio:77244 ArrayExpress:A6NED2
Bgee:A6NED2 CleanEx:HS_RCCD1 Genevestigator:A6NED2 Uniprot:A6NED2
Length = 376
Score = 110 (43.8 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL +G++ +WG GQ L G EP L +V A A GW H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGW-H 221
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
V V+E G++Y WGW E A TR+ G
Sbjct: 222 SVCVSETGDIYIWGWNESGQLALPTRNLAEDG 253
Score = 100 (40.3 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK +CG RH+AVVT G L T+GWG YGQ
Sbjct: 299 GSDAVKA-SCGSRHTAVVTRTGELYTWGWGKYGQ 331
Score = 60 (26.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
GQ L SG+ + P PL + + +A W++ VT G +
Sbjct: 18 GQE-LGSGRGRQVHSPSPLRAGVDICRVSASWSYTAFVTRGGRL 60
Score = 54 (24.1 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 97 PF--PLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
PF PL E + G H + + AG+V++WG
Sbjct: 149 PFYRPLAPELRARQLELGAEHALLLDAAGQVFSWG 183
Score = 51 (23.0 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
L P L+ G+ + +VAAGG H++ +S+
Sbjct: 199 LEPRLLEALQGLVMAEVAAGGWHSVCVSE 227
>RGD|1309901 [details] [associations]
symbol:Rccd1 "RCC1 domain containing 1" species:10116 "Rattus
norvegicus" [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005886
"plasma membrane" evidence=IEA;ISO] RGD:1309901 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 CTD:91433
OrthoDB:EOG41NTMF GeneTree:ENSGT00700000104312 IPI:IPI00391295
RefSeq:XP_218819.5 UniGene:Rn.225183 Ensembl:ENSRNOT00000029471
GeneID:308760 KEGG:rno:308760 UCSC:RGD:1309901 NextBio:659480
Uniprot:D3ZG92
Length = 378
Score = 109 (43.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 36/115 (31%), Positives = 51/115 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA---AAGWAH 115
G AL E+G++ +WG GQ L G EP L + A A GW H
Sbjct: 169 GAEHALLLCEAGQVFSWGGGR-HGQ--LGHGSLEAELEPRLLEALQGLRMAEVAAGGW-H 224
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTG-KQSALPTEQAPPSD 169
V V+E G++Y WGW E A TR + ++++T L E+A +D
Sbjct: 225 SVCVSETGDIYIWGWNESGQLALPTRSGTEKKTVREEATELNDDGLRGEEAALAD 279
Score = 100 (40.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK +CG RH+AVVT G L T+GWG YGQ
Sbjct: 301 GSDAVKA-SCGSRHTAVVTRTGELYTWGWGKYGQ 333
>UNIPROTKB|F1RMH6 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
OMA:ERPGAWF GeneTree:ENSGT00700000104312 EMBL:CT868688
Ensembl:ENSSSCT00000002041 Uniprot:F1RMH6
Length = 382
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 63 ALATSESGKLITWGSA---DDEGQSY--LTSGKHG-ETP----EPFP----LPTEASVVK 108
A + +E GK IT G A +++G T G+ G TP +PFP LP + VK
Sbjct: 252 ARSLAEDGKTIT-GDAPGLNEDGSEAKRATEGEDGGPTPFIAVQPFPALLDLPLGSDAVK 310
Query: 109 AAAGWAHCVSVTEAGEVYTWGW 130
A+ G H VT GE+YTWGW
Sbjct: 311 ASCGSRHTAVVTRTGELYTWGW 332
Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 35/121 (28%), Positives = 51/121 (42%)
Query: 59 GCGFALATSESGKLITWGSA--DDEGQSYLTSGKHGETPEPFP-LPTEASVVKAAAGWAH 115
G AL +G++ +WG G L + + E LP A V AA GW H
Sbjct: 172 GAEHALLLDAAGQVFSWGGGRHGQLGHGTLEAEREPRVLEALQGLPM-AEV--AAGGW-H 227
Query: 116 CVSVTEAGEVYTWGWRE----CVPSAKVTRD----FGSAGSFQKDSTGKQSALPTEQAPP 167
V V+E G++Y WGW E +P+ + D G A +D + + A E P
Sbjct: 228 SVCVSETGDIYIWGWNESGQLALPARSLAEDGKTITGDAPGLNEDGSEAKRATEGEDGGP 287
Query: 168 S 168
+
Sbjct: 288 T 288
Score = 100 (40.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G VK +CG RH+AVVT G L T+GWG YGQ
Sbjct: 305 GSDAVKA-SCGSRHTAVVTRTGELYTWGWGKYGQ 337
>TAIR|locus:2163986 [details] [associations]
symbol:UVR8 "UVB-RESISTANCE 8" species:3702 "Arabidopsis
thaliana" [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISS]
[GO:0009411 "response to UV" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010224 "response to UV-B"
evidence=IEP;IGI] [GO:0000785 "chromatin" evidence=IDA] [GO:0009649
"entrainment of circadian clock" evidence=IMP] [GO:0006007 "glucose
catabolic process" evidence=RCA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009649 GO:GO:0000785 EMBL:AB007646
GO:GO:0003682 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0005085 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0010224 eggNOG:COG5184 UniGene:At.49214
EMBL:AF130441 EMBL:AY125497 EMBL:BT000600 IPI:IPI00521473
PIR:T50662 RefSeq:NP_201191.1 PDB:4D9S PDB:4DNU PDB:4DNV PDB:4DNW
PDBsum:4D9S PDBsum:4DNU PDBsum:4DNV PDBsum:4DNW
ProteinModelPortal:Q9FN03 SMR:Q9FN03 DIP:DIP-59667N STRING:Q9FN03
PRIDE:Q9FN03 EnsemblPlants:AT5G63860.1 GeneID:836506
KEGG:ath:AT5G63860 TAIR:At5g63860 HOGENOM:HOG000240817
InParanoid:Q9FN03 OMA:GTLWCWG PhylomeDB:Q9FN03
ProtClustDB:CLSN2686209 Genevestigator:Q9FN03 Uniprot:Q9FN03
Length = 440
Score = 118 (46.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 33/113 (29%), Positives = 50/113 (44%)
Query: 22 VYMWGYLP-GT--SPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
VY WG+ G S + +P+P + G K + CG LA + G++ +WG
Sbjct: 89 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--HCLAVTMEGEVQSWGR 146
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 -NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 198
Score = 110 (43.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 44/182 (24%), Positives = 75/182 (41%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
+ G ++A + +WG +D GQ G HG+ E P PT+ S +V
Sbjct: 19 IISAGASHSVALLSGDIVCSWGRGED-GQL----G-HGDA-EDRPSPTQLSALDGHQIVS 71
Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167
G H V+ +++G EVY+WGW + ++ S+ F + +Q
Sbjct: 72 VTCGADHTVAYSQSGMEVYSWGWGDF---GRLGHG-NSSDLFTPLPIKALHGIRIKQIAC 127
Query: 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
D ++ S R ++ GD +L P + G++I VAAG HT +
Sbjct: 128 GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAV 187
Query: 228 SD 229
++
Sbjct: 188 TE 189
Score = 106 (42.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 58/206 (28%), Positives = 87/206 (42%)
Query: 41 PIPARLCGGDSWKDVCGGGCG--FALATSESG-KLITWGSADDEGQSYLTSGKHGETPEP 97
P P +L D + + CG +A S+SG ++ +WG D + G HG + +
Sbjct: 56 PSPTQLSALDGHQ-IVSVTCGADHTVAYSQSGMEVYSWGWGD-----FGRLG-HGNSSDL 108
Query: 98 F-PLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKD 152
F PLP +A + + A G +HC++VT GEV +WG + G + +D
Sbjct: 109 FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ-------NGQLGLGDT--ED 159
Query: 153 STGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESE----------NPASGDEFFTLS 202
S Q E AG E T++ E+ + N GD L
Sbjct: 160 SLVPQKIQAFEGIRIKMVAAGAE-----HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV 214
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILS 228
P VT G K++ VA G RHT+ +S
Sbjct: 215 PERVTSTGGEKMSMVACGWRHTISVS 240
Score = 89 (36.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G + +ACG RH+ V+ +GAL T+GW YGQ
Sbjct: 222 GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 255
Score = 86 (35.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 22/72 (30%), Positives = 29/72 (40%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G A +E G L WG G L PE + A GW H +S
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 238
Query: 119 VTEAGEVYTWGW 130
V+ +G +YT+GW
Sbjct: 239 VSYSGALYTYGW 250
Score = 81 (33.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYG 319
+K +A G H+A VT+ G L +GWG YG
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGWGWGRYG 202
Score = 71 (30.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
S++ +I+ G RH+ +T G L +GW +GQ
Sbjct: 276 SFISQISGGWRHTMALTSDGKLYGWGWNKFGQ 307
Score = 61 (26.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG RH+ VT+ + +G G GQ
Sbjct: 330 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQ 359
Score = 50 (22.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G+ SP V K+ +V+ G RHTL +++
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 345
Score = 38 (18.4 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 214 ITKVAAGGRHTLILS 228
I++++ G RHT+ L+
Sbjct: 278 ISQISGGWRHTMALT 292
>MGI|MGI:2444156 [details] [associations]
symbol:Rccd1 "RCC1 domain containing 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] MGI:MGI:2444156
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005886 GO:GO:0005737
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 CTD:91433 HOGENOM:HOG000154085 HOVERGEN:HBG061852
OMA:ERPGAWF OrthoDB:EOG41NTMF EMBL:AK030872 EMBL:AK084219
EMBL:AK088662 EMBL:BC069844 IPI:IPI00881984 IPI:IPI00896067
RefSeq:NP_775621.2 UniGene:Mm.474502 ProteinModelPortal:Q8BTU7
SMR:Q8BTU7 PhosphoSite:Q8BTU7 PRIDE:Q8BTU7
Ensembl:ENSMUST00000047362 Ensembl:ENSMUST00000121882 GeneID:269955
KEGG:mmu:269955 UCSC:uc009ial.2 GeneTree:ENSGT00700000104312
InParanoid:Q8BTU7 NextBio:393123 Bgee:Q8BTU7 Genevestigator:Q8BTU7
Uniprot:Q8BTU7
Length = 377
Score = 98 (39.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 295 ACGGRHSAVVTDAGALLTFGWGLYGQ 320
+CG RH+AVVT G L T+GWG YGQ
Sbjct: 307 SCGSRHTAVVTRTGELYTWGWGKYGQ 332
Score = 98 (39.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 30/96 (31%), Positives = 43/96 (44%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASV--VKAAAGWAHC 116
G L +G++ +WG A GQ L G EP L + K AAG H
Sbjct: 169 GAEHVLLLCAAGQVFSWG-AGRHGQ--LGHGTLEAELEPRLLEALQGLRMAKVAAGGWHS 225
Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKD 152
V ++E G++Y WGW E A TR G+ +++
Sbjct: 226 VCLSETGDIYIWGWNESGQLALPTRS-GTENKAERE 260
Score = 81 (33.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 39/161 (24%), Positives = 62/161 (38%)
Query: 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR 141
GQ+ + H P PL + + +AGW++ VT G V G +A R
Sbjct: 18 GQALGSGNSHHSVYSPEPLHASDDICQVSAGWSYTALVTRGGRVELSG--SVSGAADGCR 75
Query: 142 DFGSAGSFQKDSTGKQSALPTEQA-PPSDKRAGEEVVKRRKTSSAREESEN-PASGDEFF 199
D ++ K + QA P GE + + S A+ + E+ P+
Sbjct: 76 DVWASEELLVLLRNKGGSSTEVQAWVPGSALQGEPLWVQNLVSGAKGQGEDEPSRESRMG 135
Query: 200 TLS--PCL---VT--------LNPGVKITKVAAGGRHTLIL 227
TL PC VT L P +++ ++ G H L+L
Sbjct: 136 TLPLLPCARAYVTPEPPFCQPLAPELRVRQLELGAEHVLLL 176
Score = 65 (27.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 94 TPEP-F--PLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
TPEP F PL E V + G H + + AG+V++WG
Sbjct: 148 TPEPPFCQPLAPELRVRQLELGAEHVLLLCAAGQVFSWG 186
Score = 62 (26.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
L P L+ G+++ KVAAGG H++ LS+
Sbjct: 202 LEPRLLEALQGLRMAKVAAGGWHSVCLSE 230
>UNIPROTKB|F1N7C1 [details] [associations]
symbol:HERC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
OMA:HIFAGTY EMBL:DAAA02017014 IPI:IPI00825680 UniGene:Bt.42179
Ensembl:ENSBTAT00000027362 NextBio:20874614 Uniprot:F1N7C1
Length = 1016
Score = 104 (41.7 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
G PE+ P L + L CG +LA G++ WG+A EGQ L G
Sbjct: 63 GEQPERIPALETLNVALVS-------CGKE--HSLAVCHKGRVFAWGAAS-EGQ--LGIG 110
Query: 90 KHGETPE-PFPLPTEASV--VKAAAGWAHCVSVTEAGEVYTWG 129
+ ET P + T A + ++ A G H V+++E G+V++WG
Sbjct: 111 EFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWG 153
Score = 82 (33.9 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 265 AASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
A SG + P V++ S G V I+CG +H+AV+T G + TFG YGQ
Sbjct: 214 ALSGNNAP--VQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGDNSYGQ 267
Score = 75 (31.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/85 (30%), Positives = 34/85 (40%)
Query: 53 KDVCGGGCGFALATS-ESGKLI-----TWGSADDEGQSYL-TSGK-HGETPEPFPLPTEA 104
+ VC GG A S E L+ T S D + L G GE PE P
Sbjct: 16 RQVCAGGNTLLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETL 75
Query: 105 SVVKAAAGWAHCVSVTEAGEVYTWG 129
+V + G H ++V G V+ WG
Sbjct: 76 NVALVSCGKEHSLAVCHKGRVFAWG 100
Score = 57 (25.1 bits), Expect = 8.3e-08, Sum P(3) = 8.3e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 195 GDEFFT-LSPCLVTLNPGVKITKVAAGGRHTLILS 228
G EF + SP V G+ + +VAAGG H+ LS
Sbjct: 163 GKEFPSQASPQRVRSLEGIPLAQVAAGGHHSFALS 197
Score = 49 (22.3 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 200 TLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
T P + G+KI +VA G H++ LS+
Sbjct: 116 TFIPKKIKTLAGIKIIQVACGHYHSVALSE 145
>FB|FBgn0031107 [details] [associations]
symbol:HERC2 "HECT and RLD domain containing protein 2
ortholog (H. sapiens)" species:7227 "Drosophila melanogaster"
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA;NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0020037 "heme binding" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF06701 PROSITE:PS50237 PROSITE:PS51416
SMART:SM00119 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 GO:GO:0005814 GO:GO:0046872
EMBL:AE014298 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 InterPro:IPR015940 PROSITE:PS50030
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
PROSITE:PS51284 InterPro:IPR000859 SUPFAM:SSF49854 GO:GO:0042787
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00700000104208 EMBL:AY113293 EMBL:AF189221
RefSeq:NP_608388.2 UniGene:Dm.3302 ProteinModelPortal:Q9VR91
SMR:Q9VR91 IntAct:Q9VR91 STRING:Q9VR91 PaxDb:Q9VR91
EnsemblMetazoa:FBtr0301344 GeneID:33035 KEGG:dme:Dmel_CG11734
UCSC:CG11734-RB CTD:8924 FlyBase:FBgn0031107 InParanoid:Q9VR91
KO:K10595 OMA:QLAFTRD OrthoDB:EOG48GTJ3 PhylomeDB:Q9VR91
GenomeRNAi:33035 NextBio:781623 Bgee:Q9VR91 GermOnline:CG11734
Uniprot:Q9VR91
Length = 4912
Score = 123 (48.4 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F+LA + +G++ TWG D + +H P+P V+ A G HC+
Sbjct: 3238 CGAQFSLALTRAGEVWTWGKGDYYRLGH-GGDQHVRKPQPIGGLRGRRVIHVAVGALHCL 3296
Query: 118 SVTEAGEVYTWG 129
+VT+AG+VY WG
Sbjct: 3297 AVTDAGQVYAWG 3308
Score = 106 (42.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCV 117
G F++A S G+L TWG A G + G P +V A AHC+
Sbjct: 780 GSQFSVALSSEGQLYTWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCL 839
Query: 118 SVTEAGEVYTWG 129
+++ +GEV+ WG
Sbjct: 840 ALSSSGEVFGWG 851
Score = 100 (40.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 31/112 (27%), Positives = 48/112 (42%)
Query: 22 VYMWG---YLPGTSPEKSPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS 77
+Y WG Y + + L P + L G + CG LA +E G + +WG
Sbjct: 3146 LYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGD 3205
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ + +TP + VV+ G +++T AGEV+TWG
Sbjct: 3206 GDF-GKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWG 3256
Score = 92 (37.4 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 54 DVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
DV G G +LA + G + WG D G+ L +G + +P + + V + AG
Sbjct: 724 DVALGSGDAHSLALTSEGLVFAWGDGD-YGK--LGNGNCNGSLQPILVESLPRVQRVFAG 780
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTR 141
V+++ G++YTWG C+ V R
Sbjct: 781 SQFSVALSSEGQLYTWGKATCLGHQLVER 809
Score = 89 (36.4 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
DRP LV +N G S V +IACG HSA +T +G +LT+G G YG+
Sbjct: 4177 DRPKLVEH--LN-----GMS-VADIACGSAHSAAITASGHVLTWGKGRYGR 4219
Score = 89 (36.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVK-AAAG 112
V GG ALA + GK+ +WG +D G+ L G +P + A ++ A G
Sbjct: 3078 VHSGG-KHALALTLDGKVFSWGEGED-GK--LGHGNRTTLDKPRLVEALRAKKIRDVACG 3133
Query: 113 WAHCVSVTEAGEVYTWGWRE 132
+H +++ GE+YTWG E
Sbjct: 3134 SSHSAAISSQGELYTWGLGE 3153
Score = 83 (34.3 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT------EASVVKAA-- 110
GC ++ A + G L+TWG +Y G HG + + LPT + VV A
Sbjct: 676 GCSYSAAITCGGNLLTWGRG-----TYARLG-HGNSDDR-SLPTLVVALSDHMVVDVALG 728
Query: 111 AGWAHCVSVTEAGEVYTWG 129
+G AH +++T G V+ WG
Sbjct: 729 SGDAHSLALTSEGLVFAWG 747
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
++++ACG HSA ++ G L T+G G YG+
Sbjct: 3127 IRDVACGSSHSAAISSQGELYTWGLGEYGR 3156
Score = 59 (25.8 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
AG VK + CG + S +T +GA+ T+G G
Sbjct: 4292 AGLGVVK-VECGSQFSVALTKSGAVYTWGKG 4321
Score = 55 (24.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGR--HTLILSD 229
GD L P LVT G ++ +VA G R TL L++
Sbjct: 3160 GDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTE 3196
Score = 49 (22.3 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTL 225
SG+ F P LV V + +VA G H++
Sbjct: 3317 SGNTFVNKKPALVIGLDAVFVNRVACGSSHSI 3348
Score = 49 (22.3 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 284 GKAGRSYVKEIAC--GGRHSAVVTDAGALLTFGWGLYGQ 320
G +VK++A GG+H +T G + +G G G+
Sbjct: 4129 GSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGK 4167
Score = 42 (19.8 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 128 WGWRECVPSAKVTRDFGSAGS 148
WGWR V + G +GS
Sbjct: 3746 WGWRFWVHAIMPAATLGESGS 3766
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 253 VPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGK 285
VP PH +P L R +V++ +V+S GK
Sbjct: 3059 VPLPHQLPVL--------RQYVVKKVAVHSGGK 3083
Score = 38 (18.4 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 212 VKITKVAAGGRHTLILS 228
VK V +GG+H L L+
Sbjct: 3073 VKKVAVHSGGKHALALT 3089
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 212 VKITKVAAGGRHTLILS 228
VK V +GG+H L L+
Sbjct: 4136 VKKVAVNSGGKHCLALT 4152
>TAIR|locus:2076889 [details] [associations]
symbol:AT3G02510 "AT3G02510" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008536 "Ran GTPase binding" evidence=ISS] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.20016
UniGene:At.41128 EMBL:AK227929 IPI:IPI00539921 RefSeq:NP_186900.3
UniGene:At.70614 ProteinModelPortal:Q0WSJ9 SMR:Q0WSJ9 PRIDE:Q0WSJ9
EnsemblPlants:AT3G02510.1 GeneID:821100 KEGG:ath:AT3G02510
TAIR:At3g02510 OMA:NGGVQCW PhylomeDB:Q0WSJ9 Genevestigator:Q2V3Z2
Uniprot:Q0WSJ9
Length = 393
Score = 120 (47.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G+L+ WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALEEDGRLLAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G T P P+ + ++V AAG H ++T+ GEVY WG
Sbjct: 224 EYGQ--LGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWG 273
Score = 104 (41.7 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 34/144 (23%), Positives = 63/144 (43%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84
+G L GT + P P+P + + D+ GG + A ++ G++ WG +
Sbjct: 225 YGQL-GTG-DTQPTSHPVPVQGLDDLTLVDIAAGGW-HSTALTDKGEVYGWGRGEHGRLG 281
Query: 85 YLTSGKHGE-TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDF 143
+ K + P+ L E +++ + G H V++T G ++++G D
Sbjct: 282 LGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALTRDGRIFSFG----------RGDH 331
Query: 144 GSAGSFQKDSTGKQSALPTEQAPP 167
G G +K +TG+ LP + PP
Sbjct: 332 GRLGYGRKVTTGQPLELPIKIPPP 355
Score = 89 (36.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
+LA + G + TWG + K P + +AA G HC++V +
Sbjct: 50 SLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQ 109
Query: 123 GEVYTWGWRE 132
G Y WG E
Sbjct: 110 GRAYAWGGNE 119
Score = 74 (31.1 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 72 LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+I WGS +D GQ + + + E SV +G + +++ + G ++TWGW
Sbjct: 7 IIAWGSGED-GQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWN 65
Query: 132 E 132
+
Sbjct: 66 Q 66
Score = 68 (29.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++CGG HS +T G + +FG G +G+
Sbjct: 306 QVSCGGTHSVALTRDGRIFSFGRGDHGR 333
Score = 60 (26.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 277 QGSVNSSGKA--GRSYVKEIACGGRHSAVVTD 306
+GS N + + G+ K IACGGRH+ + +
Sbjct: 356 EGSFNHTDEEEEGKWSAKSIACGGRHTLAIVE 387
Score = 50 (22.7 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSD 229
P V VKIT+ A GG H L + D
Sbjct: 82 PSRVKALANVKITQAAIGGWHCLAVDD 108
Score = 42 (19.8 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 217 VAAGGRHTLIL 227
+A GGRHTL +
Sbjct: 375 IACGGRHTLAI 385
>UNIPROTKB|F1RW66 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:8916 KO:K10614 OMA:SPAVDFR
EMBL:FP015981 EMBL:CU915521 RefSeq:XP_003129374.3 UniGene:Ssc.42366
Ensembl:ENSSSCT00000010082 GeneID:100517903 KEGG:ssc:100517903
Uniprot:F1RW66
Length = 1050
Score = 123 (48.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 37/171 (21%), Positives = 70/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ + P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLT 258
Score = 105 (42.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 35/111 (31%), Positives = 55/111 (49%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCG--GD-SWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY P S L I A ++CG D S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGDHSVFLL--EDGEVYTCG-L 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + +V A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADEHIVHVACGESHSLALSDRGQLFSWG 109
Score = 75 (31.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG +H+ A V +G + FG G GQ
Sbjct: 294 SEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQ 326
Score = 60 (26.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL 317
++A GG HS ++ +GA+ FGWG+
Sbjct: 194 QVAAGGAHSFALSLSGAV--FGWGM 216
>TAIR|locus:2205794 [details] [associations]
symbol:AT1G27060 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008536 "Ran GTPase binding"
evidence=ISS] INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002684
GenomeReviews:CT485782_GR Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 EMBL:BT030023 IPI:IPI00535833 RefSeq:NP_174026.1
UniGene:At.41142 UniGene:At.50938 ProteinModelPortal:A2RVN2
SMR:A2RVN2 DNASU:839595 EnsemblPlants:AT1G27060.1 GeneID:839595
KEGG:ath:AT1G27060 TAIR:At1g27060 HOGENOM:HOG000236375
InParanoid:A2RVN2 OMA:GYIYAWG PhylomeDB:A2RVN2
ProtClustDB:CLSN2682864 Genevestigator:A2RVN2 Uniprot:A2RVN2
Length = 386
Score = 90 (36.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 68 ESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYT 127
E ++ +WG+ D GQ T + P+ L + S+ A G AH +++T G+V+T
Sbjct: 13 EEEQVWSWGAGTD-GQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGKVFT 71
Query: 128 WG 129
WG
Sbjct: 72 WG 73
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH 115
CGG +A + GK+ TWG GQ + P+ ++ + +AAAGW+H
Sbjct: 55 CGGA--HVIALTSGGKVFTWGRGSS-GQLGHGDILNITLPKLVSFFDDSVITQAAAGWSH 111
Query: 116 CVSVTEAGEVYTWG 129
V+++G ++T G
Sbjct: 112 SGFVSDSGCIFTCG 125
Score = 87 (35.7 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IA G HSA VT+ G + T+GWG +GQ
Sbjct: 307 VMQIAAGAEHSAAVTENGEVKTWGWGEHGQ 336
Score = 67 (28.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 289 SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
S + + A G HS V+D+G + T G G +GQ
Sbjct: 100 SVITQAAAGWSHSGFVSDSGCIFTCGNGSFGQ 131
Score = 62 (26.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
VK +ACG RHS V+ + FG G GQ
Sbjct: 154 VKMVACGMRHSLVLFAGNQVCGFGSGKRGQ 183
Score = 49 (22.3 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 194 SGDEFFTLS-PCLVTLNPGVKITKVAAGGRHTLILS 228
S D +++ PC+V+ V++ +++A G H+ +S
Sbjct: 187 SSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAIS 222
Score = 44 (20.5 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 186 REESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
R S GD P LV+ IT+ AAG H+ +SD
Sbjct: 74 RGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWSHSGFVSD 117
Score = 43 (20.2 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
GD +P V+ + VA G RH+L+L
Sbjct: 135 GDTLSLSTPAKVSHFNNDSVKMVACGMRHSLVL 167
>TAIR|locus:2156233 [details] [associations]
symbol:RUG2 "RCC1/UVR8/GEF-like 2" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] INTERPRO:IPR000408
Pfam:PF00415 EMBL:CP002688 GenomeReviews:BA000015_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HSSP:P18754 EMBL:BT005508 EMBL:AK117526 IPI:IPI00527447
RefSeq:NP_199644.2 UniGene:At.29855 ProteinModelPortal:Q8GYL6
SMR:Q8GYL6 PRIDE:Q8GYL6 EnsemblPlants:AT5G48330.1 GeneID:834886
KEGG:ath:AT5G48330 TAIR:At5g48330 HOGENOM:HOG000238877
InParanoid:Q8GYL6 OMA:SAGHYHS PhylomeDB:Q8GYL6
ProtClustDB:CLSN2680477 ArrayExpress:Q8GYL6 Genevestigator:Q8GYL6
Uniprot:Q8GYL6
Length = 455
Score = 116 (45.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 43/167 (25%), Positives = 73/167 (43%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123
A + G L WG + GQ L +G P VVK + GW H +++T G
Sbjct: 152 AIGDDGSLWVWGRSK-RGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVDG 210
Query: 124 EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGE---EVVKRR 180
+V+ WG+ V +V G+ G +++ S T+ + AG+ E +++
Sbjct: 211 KVFGWGY---VADGRV----GNVG-LPLEASLLDSI--TDGSMKGHHAAGDLNLEAAEKK 260
Query: 181 KTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
+ +E++ P + + PCLV K+ +A G H+LIL
Sbjct: 261 VVEAMSKENDMPIAWE------PCLVEETCNEKVADIACGSDHSLIL 301
Score = 73 (30.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IACG HS ++ G LL+ G +YGQ
Sbjct: 288 VADIACGSDHSLILCHDGTLLSAGSNIYGQ 317
Score = 41 (19.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
++ G HS VT+ G +G G G+
Sbjct: 391 VSAGRVHSLCVTEKGEAWVWGCGKNGR 417
Score = 40 (19.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 294 IACGGRHSAVVTDAGA--LLTFGW 315
IA G HS + + G +L++GW
Sbjct: 339 IAAGLGHSLAICNRGERNILSWGW 362
>UNIPROTKB|A2VDP7 [details] [associations]
symbol:HERC3 "HERC3 protein" species:9913 "Bos taurus"
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204
eggNOG:COG5021 GeneTree:ENSGT00660000095216 CTD:8916
HOGENOM:HOG000208452 HOVERGEN:HBG050878 KO:K10614 OMA:SPAVDFR
OrthoDB:EOG4RBQHS EMBL:DAAA02017014 EMBL:BC133341 IPI:IPI00710875
RefSeq:NP_001077132.1 UniGene:Bt.85959 Ensembl:ENSBTAT00000013357
GeneID:510924 KEGG:bta:510924 InParanoid:A2VDP7 NextBio:20869685
Uniprot:A2VDP7
Length = 1050
Score = 119 (46.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 38/171 (22%), Positives = 68/171 (39%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDQGQLFSWGAGSDGQLGLMTIEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG R + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-RNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVVAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
Score = 115 (45.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCG--GD-SWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY P SP L I A ++CG D S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISPNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLL--EDGEVYTCG-V 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + +V A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWG 109
Score = 75 (31.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG +H+ A V +G + FG G GQ
Sbjct: 294 SEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQ 326
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL 317
++ GG HS ++ +GA+ FGWG+
Sbjct: 194 QVVAGGAHSFALSLSGAV--FGWGM 216
Score = 50 (22.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
K + + +++CG H + G T+G +GQ
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQ 168
>UNIPROTKB|Q15034 [details] [associations]
symbol:HERC3 "Probable E3 ubiquitin-protein ligase HERC3"
species:9606 "Homo sapiens" [GO:0016023 "cytoplasmic
membrane-bounded vesicle" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IDA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0016023 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 EMBL:CH471057 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 eggNOG:COG5021 EMBL:D25215 EMBL:AK289990
IPI:IPI00014216 RefSeq:NP_001258531.1 RefSeq:NP_055421.1
UniGene:Hs.35804 ProteinModelPortal:Q15034 SMR:Q15034 IntAct:Q15034
MINT:MINT-158126 STRING:Q15034 PhosphoSite:Q15034 DMDM:2495699
PaxDb:Q15034 PRIDE:Q15034 DNASU:8916 Ensembl:ENST00000264345
Ensembl:ENST00000402738 GeneID:8916 KEGG:hsa:8916 UCSC:uc003hrw.1
CTD:8916 GeneCards:GC04P089444 HGNC:HGNC:4876 HPA:HPA039170
MIM:605200 neXtProt:NX_Q15034 PharmGKB:PA29251 HOGENOM:HOG000208452
HOVERGEN:HBG050878 InParanoid:Q15034 KO:K10614 OMA:SPAVDFR
OrthoDB:EOG4RBQHS PhylomeDB:Q15034 ChiTaRS:HERC3 GenomeRNAi:8916
NextBio:33540 ArrayExpress:Q15034 Bgee:Q15034 CleanEx:HS_HERC3
Genevestigator:Q15034 Uniprot:Q15034
Length = 1050
Score = 119 (46.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 37/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
Score = 105 (42.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCG--GD-SWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY P S L I A ++CG D S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLL--EDGEVYTCG-L 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + ++ A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWG 109
Score = 75 (31.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG +H+ A V +G + FG G GQ
Sbjct: 294 SEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQ 326
Score = 60 (26.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL 317
++A GG HS ++ +GA+ FGWG+
Sbjct: 194 QVAAGGAHSFALSLSGAV--FGWGM 216
>UNIPROTKB|F1NBC5 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 EMBL:AADN02016126 EMBL:AADN02016127
EMBL:AADN02016128 EMBL:AADN02016129 IPI:IPI00572483
Ensembl:ENSGALT00000016878 ArrayExpress:F1NBC5 Uniprot:F1NBC5
Length = 1050
Score = 119 (46.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 49/204 (24%), Positives = 82/204 (40%)
Query: 26 GYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85
G L S P PI A L G CG AL S+ G++ +WG+ D GQ
Sbjct: 64 GQLGHESEGSKP--EPIGA-LAGQHIVHVACGESHSVAL--SDQGQVFSWGAGSD-GQLG 117
Query: 86 LTSGKHGET-PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFG 144
LT+ + T P + ++++ + G HC+++ G+ +TWG + + ++
Sbjct: 118 LTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWG-QNSYGQLGLGKECP 176
Query: 145 SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPC 204
S S Q+ + +P Q + + + S DE SPC
Sbjct: 177 SQASPQRVKS--LDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRESPC 234
Query: 205 LVTLNPGVKITKVAAGGRHTLILS 228
V L K+ ++ G HT +L+
Sbjct: 235 HVKLLRSQKVVYISCGEEHTAVLT 258
Score = 75 (31.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG H+ A V +G + FG G GQ
Sbjct: 294 SEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQ 326
>RGD|1307803 [details] [associations]
symbol:Herc3 "HECT and RLD domain containing E3 ubiquitin
protein ligase 3" species:10116 "Rattus norvegicus" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=ISO;IBA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 RGD:1307803
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005737
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 EMBL:CH474011 IPI:IPI00568958 UniGene:Rn.203362
Ensembl:ENSRNOT00000009694 UCSC:RGD:1307803 Uniprot:D3ZYI2
Length = 909
Score = 117 (46.2 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 37/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + ++F S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEFPSQTSPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
Score = 107 (42.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 25 WGYL----PGTSPEKSPILS-PIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY PG S I++ P R S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISSNLQGIVAEPQVCRFVSDRSIKEVACGGNHSVFLL--EDGEVYTCG-V 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + ++ A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWG 109
Score = 75 (31.5 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 68 (29.0 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG +H+ A+V +G + FG G GQ
Sbjct: 294 SEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQ 326
Score = 60 (26.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL 317
++A GG HS ++ +GA+ FGWG+
Sbjct: 194 QVAAGGAHSFALSLSGAV--FGWGM 216
>TAIR|locus:2146142 [details] [associations]
symbol:AT5G16040 "AT5G16040" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008536 "Ran GTPase binding" evidence=ISS]
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688 EMBL:AL391145
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.19750
UniGene:At.49027 EMBL:BT028960 IPI:IPI00525887 PIR:T51387
RefSeq:NP_197108.1 HSSP:O87916 ProteinModelPortal:Q9LFS0 SMR:Q9LFS0
PRIDE:Q9LFS0 EnsemblPlants:AT5G16040.1 GeneID:831461
KEGG:ath:AT5G16040 TAIR:At5g16040 InParanoid:Q9LFS0 OMA:TTGHPME
PhylomeDB:Q9LFS0 ProtClustDB:CLSN2686124 Genevestigator:Q9LFS0
Uniprot:Q9LFS0
Length = 396
Score = 112 (44.5 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 35/124 (28%), Positives = 50/124 (40%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +LA + GKL TWG + K TP +V+AA G HC+
Sbjct: 45 GGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCL 104
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF-QKDSTGKQSALPTEQAPPSDKRAGEEV 176
+V + G Y WG E +G G KD TG+ P + KR +++
Sbjct: 105 AVDDQGRAYAWGGNE----------YGQCGEEPSKDETGR----PVRRDIVIPKRCAQQL 150
Query: 177 VKRR 180
R+
Sbjct: 151 TVRQ 154
Score = 108 (43.1 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 22 VYMWG--YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79
V+ WG + PG + S +P R+ G ++ + + G LA E G L WG+ +
Sbjct: 171 VWTWGQPWPPGDIKQIS-----VPVRVQGLENVRLIAVGAF-HNLALKEDGTLWAWGN-N 223
Query: 80 DEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
+ GQ L +G P +P+P + ++V AAG H ++T GEVY WG
Sbjct: 224 EYGQ--LGTGD--TQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWG 273
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 72 LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+I WGS +D GQ L + + E +V G + +++ + G+++TWGW
Sbjct: 7 VIAWGSGED-GQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWN 65
Query: 132 E 132
+
Sbjct: 66 Q 66
Score = 71 (30.1 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
AG + +++CGG HS +T G + +FG G +G+
Sbjct: 300 AGEDII-QVSCGGTHSVALTRDGRIFSFGRGDHGR 333
Score = 58 (25.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWG 316
+IA GG HS +T+ G + +GWG
Sbjct: 252 DIAAGGWHSTALTNEGEV--YGWG 273
Score = 55 (24.4 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 287 GRSYVKEIACGGRHSAVVTD 306
G+ K +ACGGRH+ + +
Sbjct: 368 GKWIAKHVACGGRHTLAIVE 387
Score = 51 (23.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+P LV VKI + A GG H L + D
Sbjct: 81 TPSLVKSLANVKIVQAAIGGWHCLAVDD 108
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G V+ IA G H+ + + G L +G YGQ
Sbjct: 194 GLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQ 227
Score = 45 (20.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
D+ + P V L G I +V+ GG H++ L+
Sbjct: 286 DKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALT 318
Score = 44 (20.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 211 GVKITK-VAAGGRHTLIL 227
G I K VA GGRHTL +
Sbjct: 368 GKWIAKHVACGGRHTLAI 385
>UNIPROTKB|E1C514 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:SPAVDFR EMBL:AADN02016126
EMBL:AADN02016127 EMBL:AADN02016128 EMBL:AADN02016129
IPI:IPI00576498 Ensembl:ENSGALT00000016877 ArrayExpress:E1C514
Uniprot:E1C514
Length = 1050
Score = 118 (46.6 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 39/172 (22%), Positives = 74/172 (43%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAGWAHC 116
CG ++A S+ G++ +WG+ D GQ LT+ + T P + ++++ + G HC
Sbjct: 91 CGESHSVALSDQGQVFSWGAGSD-GQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHC 149
Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEV 176
+++ G+ +TWG + + ++ S S Q+ + +P Q +
Sbjct: 150 LALAADGQFFTWG-QNSYGQLGLGKECPSQASPQRVKS--LDGIPLAQVAAGGAHSFALS 206
Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ + S DE SPC V L K+ ++ G HT +L+
Sbjct: 207 LSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLT 258
Score = 75 (31.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG H+ A V +G + FG G GQ
Sbjct: 294 SEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQ 326
>RGD|1307989 [details] [associations]
symbol:Herc2 "HECT and RLD domain containing E3 ubiquitin
protein ligase 2" species:10116 "Rattus norvegicus" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO;IBA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=ISO;IBA] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0020037 "heme binding" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0032183 "SUMO binding"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0020037
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
GO:GO:0042787 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 InterPro:IPR006624
SMART:SM00706 IPI:IPI00476523 Ensembl:ENSRNOT00000019318
UCSC:RGD:1307989 ArrayExpress:F1M716 Uniprot:F1M716
Length = 3607
Score = 118 (46.6 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 2016 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 2074
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 2075 ALHCLAVTDSGQVYAWG 2091
Score = 100 (40.3 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 1843 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 1901
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 1902 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 1936
Score = 82 (33.9 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 2867 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 2896
Score = 58 (25.5 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 2973 VVKVECGSQFSVALTKSGAVYTWGKGDY 3000
Score = 48 (22.0 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 2109 PTLVQGLEGQKITRVACGSSHSV 2131
Score = 45 (20.9 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 2049 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 2083
Score = 45 (20.9 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 2851 SPCDRPRVIESLRGIEVVDVAAGGAHS 2877
Score = 42 (19.8 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 2801 TPTLLESIQHVFIKKVAVNSGGKHCLALS 2829
>UNIPROTKB|G3MX12 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0020037 "heme binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0046872 GO:GO:0008270
GO:GO:0020037 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 InterPro:IPR006624 SMART:SM00706
EMBL:DAAA02003804 EMBL:DAAA02003805 Ensembl:ENSBTAT00000063010
Uniprot:G3MX12
Length = 4757
Score = 121 (47.7 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3128 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3186
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3187 ALHCLAVTDAGQVYAWG 3203
Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 569 DVVKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 627
Query: 112 GWAHCVSVTEAGEVYTWGWRE-C--VPSAKVTRDFGSA 146
G HC+++TE EV++WG + C + +VT+ SA
Sbjct: 628 GSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPSA 665
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 37/113 (32%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 483 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 542
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + VVK G V++T+ G+VY+WG
Sbjct: 543 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSVALTKDGQVYSWG 593
Score = 100 (40.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 2955 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3013
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3014 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3048
Score = 87 (35.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3022 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3051
Score = 82 (33.9 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4016 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4045
Score = 58 (25.5 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4122 VVKVECGSQFSVALTKSGAVYTWGKGDY 4149
Score = 48 (22.0 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3221 PTLVQGLEGQKITRVACGSSHSV 3243
Score = 45 (20.9 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3161 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3195
Score = 42 (19.8 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 3950 TPTLLESIQHVFIKKVAVNSGGKHCLALS 3978
Score = 42 (19.8 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G ++ VAAGG H+
Sbjct: 4000 SPCDRPRVIESLRGTEVVDVAAGGAHS 4026
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3618 GSVNGWGWR 3626
>UNIPROTKB|F1M560 [details] [associations]
symbol:Herc2 "Protein Herc2" species:10116 "Rattus
norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0046872
GO:GO:0008270 GO:GO:0020037 GO:GO:0005622 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.10.120.10
SUPFAM:SSF55856 InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
Pfam:PF03256 PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204 InterPro:IPR006624
SMART:SM00706 IPI:IPI00779702 Ensembl:ENSRNOT00000055965
ArrayExpress:F1M560 Uniprot:F1M560
Length = 3643
Score = 118 (46.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 2016 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 2074
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 2075 ALHCLAVTDSGQVYAWG 2091
Score = 100 (40.3 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 1843 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 1901
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 1902 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 1936
Score = 82 (33.9 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 2903 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 2932
Score = 58 (25.5 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 3009 VVKVECGSQFSVALTKSGAVYTWGKGDY 3036
Score = 48 (22.0 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 2109 PTLVQGLEGQKITRVACGSSHSV 2131
Score = 45 (20.9 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 2049 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 2083
Score = 45 (20.9 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 2887 SPCDRPRVIESLRGIEVVDVAAGGAHS 2913
Score = 42 (19.8 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 2837 TPTLLESIQHVFIKKVAVNSGGKHCLALS 2865
>UNIPROTKB|E2RDC2 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032183 "SUMO binding" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0020037 "heme
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0007283
GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 GeneTree:ENSGT00700000104208 CTD:8924
KO:K10595 OMA:QLAFTRD InterPro:IPR006624 SMART:SM00706
EMBL:AAEX03002160 EMBL:AAEX03002161 EMBL:AAEX03002162
RefSeq:XP_536160.2 ProteinModelPortal:E2RDC2
Ensembl:ENSCAFT00000015697 GeneID:479005 KEGG:cfa:479005
Uniprot:E2RDC2
Length = 4837
Score = 121 (47.7 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3208 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3266
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3267 ALHCLAVTDAGQVYAWG 3283
Score = 115 (45.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 659 DVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 718 GSTHCLALTEDSEVHSWG 735
Score = 109 (43.4 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 573 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 632
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + VVK G +++T+ G+VY+WG
Sbjct: 633 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWG 683
Score = 100 (40.3 bits), Expect = 0.00070, Sum P(4) = 0.00070
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3035 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3093
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3094 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3128
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3102 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3131
Score = 82 (33.9 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4096 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4125
Score = 58 (25.5 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4202 VVKVECGSQFSVALTKSGAVYTWGKGDY 4229
Score = 48 (22.0 bits), Expect = 9.8e-07, Sum P(3) = 9.8e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3301 PTLVQGLEGQKITRVACGSSHSV 3323
Score = 45 (20.9 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3241 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3275
Score = 45 (20.9 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 4080 SPCDRPRVIESLRGIEVVDVAAGGAHS 4106
Score = 43 (20.2 bits), Expect = 3.5e-06, Sum P(4) = 3.5e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 166 PPSDKRAGEEVVKRRKTSSARE-ESENPASGDE 197
P +D ++ T + + ES+N ASG E
Sbjct: 3501 PVTDDPGAASIIAETMTKTKEDVESQNKASGPE 3533
Score = 42 (19.8 bits), Expect = 3.5e-06, Sum P(4) = 3.5e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4030 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4058
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3698 GSVNGWGWR 3706
>UNIPROTKB|E1B782 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032183 "SUMO binding" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0020037 "heme
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0007283
GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 GeneTree:ENSGT00700000104208
OMA:QLAFTRD InterPro:IPR006624 SMART:SM00706 EMBL:DAAA02003804
EMBL:DAAA02003805 IPI:IPI00713038 Ensembl:ENSBTAT00000018496
Uniprot:E1B782
Length = 4847
Score = 121 (47.7 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 29/77 (37%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3218 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3276
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3277 ALHCLAVTDAGQVYAWG 3293
Score = 115 (45.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 659 DVVKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWGWRE-C--VPSAKVTRDFGSA 146
G HC+++TE EV++WG + C + +VT+ SA
Sbjct: 718 GSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPSA 755
Score = 110 (43.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 37/113 (32%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 573 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 632
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + VVK G V++T+ G+VY+WG
Sbjct: 633 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSVALTKDGQVYSWG 683
Score = 100 (40.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3045 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3103
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3104 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3138
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3112 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3141
Score = 82 (33.9 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4106 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4135
Score = 58 (25.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4212 VVKVECGSQFSVALTKSGAVYTWGKGDY 4239
Score = 48 (22.0 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3311 PTLVQGLEGQKITRVACGSSHSV 3333
Score = 45 (20.9 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3251 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3285
Score = 42 (19.8 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4040 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4068
Score = 42 (19.8 bits), Expect = 0.00091, Sum P(3) = 0.00091
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G ++ VAAGG H+
Sbjct: 4090 SPCDRPRVIESLRGTEVVDVAAGGAHS 4116
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3708 GSVNGWGWR 3716
>UNIPROTKB|E2RMB0 [details] [associations]
symbol:HERC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0016567 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:8916 KO:K10614 OMA:SPAVDFR
EMBL:AAEX03016754 EMBL:AAEX03016753 RefSeq:XP_535653.3
Ensembl:ENSCAFT00000015540 GeneID:478475 KEGG:cfa:478475
Uniprot:E2RMB0
Length = 1050
Score = 116 (45.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/171 (21%), Positives = 69/171 (40%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC+
Sbjct: 91 CGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCL 150
Query: 118 SVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVV 177
++ G+ +TWG + + +++ S S Q+ +P Q + +
Sbjct: 151 ALAADGQFFTWG-KNSHGQLGLGKEYPSQASPQR--VRSLEGIPLAQVAAGGAHSFALSL 207
Query: 178 KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ DE SPC V L K+ ++ G HT +L+
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLT 258
Score = 106 (42.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 35/111 (31%), Positives = 55/111 (49%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCG--GD-SWKDV-CGGGCGFALATSESGKLITWGSA 78
WGY P S L I A ++CG D S K+V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLL--EDGEVYTCG-L 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ +GQ L + G PE + +V A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWG 109
Score = 75 (31.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T +G + TFG G GQ
Sbjct: 247 ISCGEEHTAVLTKSGGVFTFGAGSCGQ 273
Score = 66 (28.3 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +IACG +H+ A V +G + FG G GQ
Sbjct: 294 SEVTQIACGRQHTLAFVPSSGLIYAFGCGAKGQ 326
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL 317
++A GG HS ++ +GA+ FGWG+
Sbjct: 194 QVAAGGAHSFALSLSGAV--FGWGM 216
>ZFIN|ZDB-GENE-070718-6 [details] [associations]
symbol:herc2 "hect domain and RLD 2" species:7955
"Danio rerio" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0020037 "heme binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00632
InterPro:IPR000433 InterPro:IPR000569 InterPro:IPR001199
InterPro:IPR009060 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-070718-6
GO:GO:0046872 GO:GO:0008270 GO:GO:0020037 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 InterPro:IPR006624 SMART:SM00706
EMBL:CABZ01006344 EMBL:CABZ01006345 EMBL:CABZ01006346 EMBL:FP085470
IPI:IPI00495163 Ensembl:ENSDART00000110770 Uniprot:E7EYK8
Length = 4832
Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA 114
VC G F++A ++ G++ TWG D++ + T +H P+ VV A G
Sbjct: 652 VCCGS-QFSVALTKDGQVYTWGKGDNQRLGHGTD-EHVRYPKLLDSLQGKRVVDIAVGST 709
Query: 115 HCVSVTEAGEVYTWG 129
HC+++TE GEV++WG
Sbjct: 710 HCLALTEEGEVHSWG 724
Score = 116 (45.9 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + T H P+ +V A G
Sbjct: 3203 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTD-VHVRKPQMVEGLRGKKIVHVAVG 3261
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VTE G+V+ WG
Sbjct: 3262 ALHCLAVTETGQVFAWG 3278
Score = 110 (43.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 54 DV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAA 111
DV CG G LA +E+G++ +WG D G+ G G +TP+ + +VK
Sbjct: 597 DVACGSGDAQTLAVTENGQVWSWGDGD-YGKLG-RGGSDGCKTPKLVEKLQDLDIVKVCC 654
Query: 112 GWAHCVSVTEAGEVYTWG 129
G V++T+ G+VYTWG
Sbjct: 655 GSQFSVALTKDGQVYTWG 672
Score = 98 (39.6 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ ++ K G A+A + GK+ +WG DD G+ S + + P
Sbjct: 3030 PIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3088
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+Y+WG E
Sbjct: 3089 IEALKTKRIRDIACGSSHSAAITSSGELYSWGLGE 3123
Score = 85 (35.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L ++G G YG+
Sbjct: 3097 IRDIACGSSHSAAITSSGELYSWGLGEYGR 3126
Score = 80 (33.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IA GG HSA +T +G L T+G G YG+
Sbjct: 4091 VVDIAAGGAHSACITASGELYTWGKGRYGR 4120
Score = 58 (25.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4197 VVKVECGSQFSVALTKSGAVYTWGKGDY 4224
Score = 48 (22.0 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3296 PTLVQGLEGQKITRVACGSSHSV 3318
Score = 46 (21.3 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHTLILS 228
SPC ++ GV++ +AAGG H+ ++
Sbjct: 4075 SPCDRPRVIESLRGVEVVDIAAGGAHSACIT 4105
Score = 42 (19.8 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4025 TPTLLESIQHVFIRKVAVNSGGKHCLALS 4053
Score = 42 (19.8 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGG--RHTLILSD 229
GD L P LV G ++ VA G TL L+D
Sbjct: 4124 GDSEDQLKPKLVEALQGHRVIDVACGSGDAQTLCLTD 4160
Score = 41 (19.5 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L +++
Sbjct: 3236 GTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTE 3270
Score = 39 (18.8 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 212 VKITKVAAGGRHTLILS 228
VK V +GGRH + L+
Sbjct: 3043 VKKVAVHSGGRHAMALT 3059
>UNIPROTKB|F1NDJ4 [details] [associations]
symbol:RCCD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005886 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104312 EMBL:AADN02038799 IPI:IPI00812606
Ensembl:ENSGALT00000038135 OMA:GHKDTSS Uniprot:F1NDJ4
Length = 221
Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++CG RH+A +T G L T+GWG YGQ
Sbjct: 118 VAAVSCGSRHTAALTRGGELNTWGWGKYGQ 147
Score = 78 (32.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 109 AAAGWAHCVSVTEAGEVYTWGWRE 132
AA GW H V++ G++Y WGW E
Sbjct: 39 AAGGW-HSACVSDGGDLYVWGWNE 61
Score = 52 (23.4 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSD 229
P LV GV + VAAGG H+ +SD
Sbjct: 24 PRLVEALGGVPMRAVAAGGWHSACVSD 50
>UNIPROTKB|D4ACN3 [details] [associations]
symbol:Herc2 "Protein Herc2" species:10116 "Rattus
norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS01357 PROSITE:PS50135 PROSITE:PS50237
PROSITE:PS50255 PROSITE:PS51416 SMART:SM00119 SMART:SM00291
RGD:1307989 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0007283 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 OrthoDB:EOG41C6V9 InterPro:IPR006624
SMART:SM00706 IPI:IPI00764717 Ensembl:ENSRNOT00000019245
ArrayExpress:D4ACN3 Uniprot:D4ACN3
Length = 4779
Score = 118 (46.6 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3151 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3209
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3210 ALHCLAVTDSGQVYAWG 3226
Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 604 DVIKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 662
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 663 GSTHCLALTEDSEVHSWG 680
Score = 108 (43.1 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 35/113 (30%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 518 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 577
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + V+K G +++T+ G+VY+WG
Sbjct: 578 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQVYSWG 628
Score = 100 (40.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 2978 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3036
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3037 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3071
Score = 87 (35.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3045 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3074
Score = 82 (33.9 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4038 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4067
Score = 58 (25.5 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4144 VVKVECGSQFSVALTKSGAVYTWGKGDY 4171
Score = 48 (22.0 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3244 PTLVQGLEGQKITRVACGSSHSV 3266
Score = 45 (20.9 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3184 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3218
Score = 45 (20.9 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 4022 SPCDRPRVIESLRGIEVVDVAAGGAHS 4048
Score = 42 (19.8 bits), Expect = 8.2e-06, Sum P(3) = 8.2e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 3972 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4000
Score = 39 (18.8 bits), Expect = 0.00022, Sum P(4) = 0.00022
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3640 GSVNGWGWR 3648
>UNIPROTKB|E1BW48 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0020037
"heme binding" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IEA] [GO:0032183 "SUMO binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF00569 Pfam:PF06701 PROSITE:PS01357
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS51416
SMART:SM00119 SMART:SM00291 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 SUPFAM:SSF46934 Gene3D:2.30.30.30
InterPro:IPR021097 InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 OMA:QLAFTRD EMBL:AADN02017653
IPI:IPI00571031 Ensembl:ENSGALT00000027018 ArrayExpress:E1BW48
Uniprot:E1BW48
Length = 4841
Score = 118 (46.6 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
D+ CG F++A ++ G++ TWG D++ + T +H P+ V+ AA
Sbjct: 659 DIVKVRCGSQFSIALTKDGQVYTWGKGDNQRLGHGTE-EHVRYPKLLEGLKGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 718 GSTHCLALTEDSEVHSWG 735
Score = 117 (46.2 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + T H P+ +V A G
Sbjct: 3211 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTD-VHVRKPQVVEGLRGKKIVHVAVG 3269
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+ G+VY WG
Sbjct: 3270 ALHCLAVTDTGQVYAWG 3286
Score = 111 (44.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 573 LYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSWGD 632
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + +VK G +++T+ G+VYTWG
Sbjct: 633 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQVYTWG 683
Score = 103 (41.3 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ ++ K G A+A + GK+ +WG DD G+ S + + P
Sbjct: 3038 PIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWGEGDD-GKLGHFSRMNCDKPRL 3096
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3097 IEALKTKRIRDIACGSSHSAAITSSGELYTWGLGE 3131
Score = 89 (36.4 bits), Expect = 4.0e-06, Sum P(4) = 4.0e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3105 IRDIACGSSHSAAITSSGELYTWGLGEYGR 3134
Score = 83 (34.3 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IA GG HSA +T AG L T+G G YG+
Sbjct: 4098 VVDIAAGGAHSACITAAGDLFTWGKGRYGR 4127
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(4) = 0.00050
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4204 VVKVECGSQFSVALTKSGAVYTWGKGDY 4231
Score = 48 (22.0 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3304 PTLVQGLEGQKITRVACGSSHSV 3326
Score = 45 (20.9 bits), Expect = 0.00097, Sum P(4) = 0.00097
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHTLILS 228
SPC ++ G+++ +AAGG H+ ++
Sbjct: 4082 SPCDRPRVIESLRGIEVVDIAAGGAHSACIT 4112
Score = 44 (20.5 bits), Expect = 5.0e-06, Sum P(4) = 5.0e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3244 GTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3278
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
GE+ GW +V D GS S++ GK L + PP+ + E+
Sbjct: 1898 GELGEDGW------IRVQWDTGSTNSYRMGKEGKYD-LKLAEPPPAAQPTTED 1943
Score = 42 (19.8 bits), Expect = 7.7e-06, Sum P(4) = 7.7e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4032 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4060
Score = 39 (18.8 bits), Expect = 4.0e-06, Sum P(4) = 4.0e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 212 VKITKVAAGGRHTLILS 228
VK V +GGRH + L+
Sbjct: 3051 VKKVAVHSGGRHAMALT 3067
Score = 39 (18.8 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3700 GSVNGWGWR 3708
>UNIPROTKB|E1C8K2 [details] [associations]
symbol:HERC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR009060 InterPro:IPR010606
Pfam:PF00173 Pfam:PF00569 Pfam:PF06701 PROSITE:PS01357
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS51416
SMART:SM00119 SMART:SM00291 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0046872 GO:GO:0008270 GO:GO:0020037 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256 PROSITE:PS51284
SUPFAM:SSF46934 Gene3D:2.30.30.30 InterPro:IPR021097
InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
GeneTree:ENSGT00700000104208 EMBL:AADN02017653 IPI:IPI00818548
Ensembl:ENSGALT00000036596 ArrayExpress:E1C8K2 Uniprot:E1C8K2
Length = 4841
Score = 118 (46.6 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
D+ CG F++A ++ G++ TWG D++ + T +H P+ V+ AA
Sbjct: 659 DIVKVRCGSQFSIALTKDGQVYTWGKGDNQRLGHGTE-EHVRYPKLLEGLKGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 718 GSTHCLALTEDSEVHSWG 735
Score = 117 (46.2 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + T H P+ +V A G
Sbjct: 3211 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTD-VHVRKPQVVEGLRGKKIVHVAVG 3269
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT+ G+VY WG
Sbjct: 3270 ALHCLAVTDTGQVYAWG 3286
Score = 111 (44.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 573 LYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSWGD 632
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + +VK G +++T+ G+VYTWG
Sbjct: 633 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQVYTWG 683
Score = 103 (41.3 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ ++ K G A+A + GK+ +WG DD G+ S + + P
Sbjct: 3038 PIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWGEGDD-GKLGHFSRMNCDKPRL 3096
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3097 IEALKTKRIRDIACGSSHSAAITSSGELYTWGLGE 3131
Score = 89 (36.4 bits), Expect = 4.0e-06, Sum P(4) = 4.0e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3105 IRDIACGSSHSAAITSSGELYTWGLGEYGR 3134
Score = 83 (34.3 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IA GG HSA +T AG L T+G G YG+
Sbjct: 4098 VVDIAAGGAHSACITAAGDLFTWGKGRYGR 4127
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(4) = 0.00050
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4204 VVKVECGSQFSVALTKSGAVYTWGKGDY 4231
Score = 48 (22.0 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3304 PTLVQGLEGQKITRVACGSSHSV 3326
Score = 45 (20.9 bits), Expect = 0.00097, Sum P(4) = 0.00097
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHTLILS 228
SPC ++ G+++ +AAGG H+ ++
Sbjct: 4082 SPCDRPRVIESLRGIEVVDIAAGGAHSACIT 4112
Score = 44 (20.5 bits), Expect = 5.0e-06, Sum P(4) = 5.0e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3244 GTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3278
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
GE+ GW +V D GS S++ GK L + PP+ + E+
Sbjct: 1898 GELGEDGW------IRVQWDTGSTNSYRMGKEGKYD-LKLAEPPPAAQPTTED 1943
Score = 42 (19.8 bits), Expect = 7.7e-06, Sum P(4) = 7.7e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4032 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4060
Score = 39 (18.8 bits), Expect = 4.0e-06, Sum P(4) = 4.0e-06
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 212 VKITKVAAGGRHTLILS 228
VK V +GGRH + L+
Sbjct: 3051 VKKVAVHSGGRHAMALT 3067
Score = 39 (18.8 bits), Expect = 8.7e-05, Sum P(4) = 8.7e-05
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3700 GSVNGWGWR 3708
>UNIPROTKB|O95714 [details] [associations]
symbol:HERC2 "E3 ubiquitin-protein ligase HERC2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0020037 "heme binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=NAS] [GO:0006886 "intracellular protein transport"
evidence=NAS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0031625 "ubiquitin protein
ligase binding" evidence=IPI] [GO:0032183 "SUMO binding"
evidence=IDA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS00191 PROSITE:PS01357 PROSITE:PS50082
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS50294
PROSITE:PS51416 SMART:SM00119 SMART:SM00291 UniPathway:UPA00143
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0006886 GO:GO:0005814 PROSITE:PS00678
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0007283 GO:GO:0020037 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0005085 Gene3D:3.10.120.10 SUPFAM:SSF55856
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939
Pfam:PF03256 PROSITE:PS51284 GO:GO:0042787 GO:GO:0032183
Gene3D:2.30.30.30 InterPro:IPR021097 InterPro:IPR014722
Pfam:PF11515 SUPFAM:SSF56204 eggNOG:COG5021 CTD:8924 KO:K10595
OMA:QLAFTRD EMBL:AF071172 EMBL:AC091304 EMBL:AC126332 EMBL:AC135329
EMBL:AF224243 EMBL:AF224242 EMBL:AF224245 EMBL:AF224244
EMBL:AF224249 EMBL:AF224246 EMBL:AF224247 EMBL:AF224248
EMBL:AF224251 EMBL:AF224250 EMBL:AF224255 EMBL:AF224254
EMBL:AF224252 EMBL:AF224253 EMBL:AF224257 EMBL:AF224256
EMBL:AF225401 EMBL:AF225400 EMBL:AF225404 EMBL:AF225402
EMBL:AF225403 EMBL:AF225407 EMBL:AF225405 EMBL:AF225406
EMBL:AF225409 EMBL:AF225408 IPI:IPI00005826 RefSeq:NP_004658.3
UniGene:Hs.434890 UniGene:Hs.610412 UniGene:Hs.741019 PDB:2KEO
PDB:3KCI PDBsum:2KEO PDBsum:3KCI ProteinModelPortal:O95714
SMR:O95714 DIP:DIP-37632N IntAct:O95714 STRING:O95714
PhosphoSite:O95714 PaxDb:O95714 PRIDE:O95714
Ensembl:ENST00000261609 GeneID:8924 KEGG:hsa:8924 UCSC:uc001zbj.3
GeneCards:GC15M028356 H-InvDB:HIX0012044 H-InvDB:HIX0017540
H-InvDB:HIX0038121 H-InvDB:HIX0038320 H-InvDB:HIX0038830
H-InvDB:HIX0173226 H-InvDB:HIX0173299 H-InvDB:HIX0194348
HGNC:HGNC:4868 HPA:CAB017188 MIM:227220 MIM:605837
neXtProt:NX_O95714 PharmGKB:PA29243 HOVERGEN:HBG081598
InParanoid:O95714 OrthoDB:EOG41C6V9 PhylomeDB:O95714
EvolutionaryTrace:O95714 GenomeRNAi:8924 NextBio:33552
ArrayExpress:O95714 Bgee:O95714 Genevestigator:O95714
GermOnline:ENSG00000128731 InterPro:IPR006624 SMART:SM00706
Uniprot:O95714
Length = 4834
Score = 118 (46.6 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3207 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3265
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3266 ALHCLAVTDSGQVYAWG 3282
Score = 115 (45.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 658 DVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 716
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 717 GSTHCLALTEDSEVHSWG 734
Score = 109 (43.4 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 572 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 631
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + VVK G +++T+ G+VY+WG
Sbjct: 632 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWG 682
Score = 100 (40.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3034 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3092
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3093 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3127
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3101 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3130
Score = 82 (33.9 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4093 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4122
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4199 VVKVECGSQFSVALTKSGAVYTWGKGDY 4226
Score = 48 (22.0 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3300 PTLVQGLEGQKITRVACGSSHSV 3322
Score = 45 (20.9 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3240 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3274
Score = 45 (20.9 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 4077 SPCDRPRVIESLRGIEVVDVAAGGAHS 4103
Score = 42 (19.8 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4027 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4055
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3695 GSVNGWGWR 3703
>MGI|MGI:103234 [details] [associations]
symbol:Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl
terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" species:10090
"Mus musculus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO;IBA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006464 "cellular protein
modification process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016874
"ligase activity" evidence=IEA] [GO:0020037 "heme binding"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=ISO] [GO:0032183 "SUMO binding" evidence=ISO] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00632 InterPro:IPR000433 InterPro:IPR000569
InterPro:IPR001199 InterPro:IPR010606 Pfam:PF00173 Pfam:PF00569
Pfam:PF06701 PROSITE:PS00191 PROSITE:PS01357 PROSITE:PS50082
PROSITE:PS50135 PROSITE:PS50237 PROSITE:PS50255 PROSITE:PS50294
PROSITE:PS51416 SMART:SM00119 SMART:SM00291 UniPathway:UPA00143
MGI:MGI:103234 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005814 PROSITE:PS00678 GO:GO:0005743 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0007283 GO:GO:0020037
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
Gene3D:3.10.120.10 SUPFAM:SSF55856 InterPro:IPR008979
SUPFAM:SSF49785 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00625
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR004939 Pfam:PF03256
PROSITE:PS51284 GO:GO:0042787 GO:GO:0032183 Gene3D:2.30.30.30
InterPro:IPR021097 InterPro:IPR014722 Pfam:PF11515 SUPFAM:SSF56204
eggNOG:COG5021 GeneTree:ENSGT00700000104208 CTD:8924 KO:K10595
OMA:QLAFTRD HOVERGEN:HBG081598 OrthoDB:EOG41C6V9 InterPro:IPR006624
SMART:SM00706 EMBL:AF061529 EMBL:AF071173 EMBL:AC102121
EMBL:AC102150 EMBL:AK141515 EMBL:AK148361 EMBL:AK161826
EMBL:AK162270 EMBL:AK162708 EMBL:AK220338 EMBL:BC044667
EMBL:BC054829 IPI:IPI00309574 IPI:IPI00314989 RefSeq:NP_034548.2
UniGene:Mm.20929 ProteinModelPortal:Q4U2R1 SMR:Q4U2R1 STRING:Q4U2R1
PhosphoSite:Q4U2R1 PaxDb:Q4U2R1 PRIDE:Q4U2R1
Ensembl:ENSMUST00000076226 Ensembl:ENSMUST00000164095 GeneID:15204
KEGG:mmu:15204 UCSC:uc009hdv.1 InParanoid:Q4U2R1 ChiTaRS:HERC2
NextBio:287753 Bgee:Q4U2R1 Genevestigator:Q4U2R1
GermOnline:ENSMUSG00000030451 Uniprot:Q4U2R1
Length = 4836
Score = 118 (46.6 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 55 VCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
VC CG F+LA ++SG + TWG D + S H P+ +V A G
Sbjct: 3208 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH-GSDVHVRKPQVVEGLRGKKIVHVAVG 3266
Query: 113 WAHCVSVTEAGEVYTWG 129
HC++VT++G+VY WG
Sbjct: 3267 ALHCLAVTDSGQVYAWG 3283
Score = 115 (45.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 659 DVIKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 718 GSTHCLALTEDSEVHSWG 735
Score = 108 (43.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 35/113 (30%), Positives = 53/113 (46%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSWK--DV-CGGGCGFALATSESGKLITWGS 77
+Y WG G S IP + G K DV CG G LA +E+G++ +WG
Sbjct: 573 LYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD 632
Query: 78 ADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
D G+ G G +TP+ + V+K G +++T+ G+VY+WG
Sbjct: 633 GD-YGKLG-RGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQVYSWG 683
Score = 100 (40.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3035 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3093
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
+ A G +H ++T +GE+YTWG E
Sbjct: 3094 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3128
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++IACG HSA +T +G L T+G G YG+
Sbjct: 3102 IRDIACGSSHSAALTSSGELYTWGLGEYGR 3131
Score = 82 (33.9 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++A GG HSA VT AG L T+G G YG+
Sbjct: 4095 VVDVAAGGAHSACVTAAGDLYTWGKGRYGR 4124
Score = 58 (25.5 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLY 318
V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4201 VVKVECGSQFSVALTKSGAVYTWGKGDY 4228
Score = 48 (22.0 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTL 225
P LV G KIT+VA G H++
Sbjct: 3301 PTLVQGLEGQKITRVACGSSHSV 3323
Score = 45 (20.9 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + P +V G KI VA G H L ++D
Sbjct: 3241 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTD 3275
Score = 45 (20.9 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 202 SPC----LVTLNPGVKITKVAAGGRHT 224
SPC ++ G+++ VAAGG H+
Sbjct: 4079 SPCDRPRVIESLRGIEVVDVAAGGAHS 4105
Score = 42 (19.8 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILS 228
+P L+ V I KVA +GG+H L LS
Sbjct: 4029 TPTLLESIQHVFIKKVAVNSGGKHCLALS 4057
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 123 GEVYTWGWR 131
G V WGWR
Sbjct: 3697 GSVNGWGWR 3705
>UNIPROTKB|F1N1N9 [details] [associations]
symbol:HERC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050688 "regulation of defense response to virus"
evidence=IEA] [GO:0042296 "ISG15 ligase activity" evidence=IEA]
[GO:0032020 "ISG15-protein conjugation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0050688 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:KDWITNT GO:GO:0042296
GO:GO:0032020 EMBL:DAAA02017014 IPI:IPI00907336
Ensembl:ENSBTAT00000052811 Uniprot:F1N1N9
Length = 959
Score = 101 (40.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGK---HGETPEPFPLPTEASVVKAAAGWA 114
CG +LA S+ G+L WG D GQ L G+ TPE + +V+ +AG A
Sbjct: 155 CGDYHSLALSKGGELFAWGQNLD-GQ--LGVGRIFASTSTPEIVENLSGVPLVQISAGEA 211
Query: 115 HCVSVTEAGEVYTWGWREC 133
H ++++ +G VY+WG +C
Sbjct: 212 HSMALSMSGNVYSWGRNDC 230
Score = 87 (35.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACGG H+A++T +G + TFG G YGQ
Sbjct: 255 VEFLACGGCHTALLTKSGLVFTFGDGKYGQ 284
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 283 SGKAGRSYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
+G G V +IACG +H+ A V+D G + +FG G GQ
Sbjct: 300 TGLVGNR-VTQIACGRQHTLAYVSDTGKVFSFGSGKEGQ 337
>TAIR|locus:2159295 [details] [associations]
symbol:RUG3 "RCC1/UVR8/GEF-like 3" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008536 "Ran GTPase binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IMP] [GO:0032981 "mitochondrial respiratory chain complex
I assembly" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005739 EMBL:CP002688 GO:GO:0008380 EMBL:AB015472
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0032981
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 UniGene:At.29139
UniGene:At.50545 HSSP:P18754 IPI:IPI00532631 RefSeq:NP_200895.2
ProteinModelPortal:Q9FJG9 SMR:Q9FJG9 PRIDE:Q9FJG9
EnsemblPlants:AT5G60870.1 GeneID:836208 KEGG:ath:AT5G60870
TAIR:At5g60870 HOGENOM:HOG000030010 InParanoid:Q9FJG9 OMA:ISCGLFH
PhylomeDB:Q9FJG9 ProtClustDB:CLSN2681113 Genevestigator:Q9FJG9
Uniprot:Q9FJG9
Length = 445
Score = 97 (39.2 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 34 EKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHG 92
++S L+ P R+ DS G CG F + G L WG D G+ L G+
Sbjct: 83 DQSFSLAQTPGRI-DADSSSFRIGISCGLFHSGLTIDGDLWIWGKGDG-GR--LGFGQEN 138
Query: 93 ET--PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
P PL E S+ A G H V++T G+V+TWG+
Sbjct: 139 SVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY 178
Score = 88 (36.0 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 30/118 (25%), Positives = 51/118 (43%)
Query: 22 VYMWGYLP-GTSPEKSPILSPIPARLCGGDSW----KDVCGGGCGFALATSESGKLITWG 76
V+ WGY G K +P R+ DSW + G A A +ESG+L WG
Sbjct: 173 VFTWGYGGFGALGHKVYTRELVPRRV--DDSWDCKISAIATSGTHTA-AITESGELYMWG 229
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEAS-----VVKAAAGWAHCVSVTEAGEVYTWG 129
+ +G+ L G+ +P++ V + G +++T+ G+++ WG
Sbjct: 230 REEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWG 287
Score = 80 (33.2 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ +IACGG HS +T+ G +L++G G +GQ
Sbjct: 316 ITQIACGGYHSLALTEEGKVLSWGHGGHGQ 345
Score = 63 (27.2 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
GD P V GV+IT++A GG H+L L++
Sbjct: 297 GDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTE 331
Score = 59 (25.8 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSW 336
SV S KA V ++CGG + +T G L + WG G G N+G W
Sbjct: 252 SVPSKVKALTVPVASVSCGGFFTMALTKEGQL--WNWGANSNYEL----GRGDNLGGW 303
Score = 52 (23.4 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 294 IACGGRHSAVVTDAGALLTFG 314
IA GG SA +TD G L +G
Sbjct: 371 IASGGSSSAAITDGGELWMWG 391
Score = 39 (18.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 193 ASGDEFFT--LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
A G + +T L P V + KI+ +A G HT +++
Sbjct: 183 ALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITE 221
>UNIPROTKB|E2RFW5 [details] [associations]
symbol:HERC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:26091 KO:K10615 EMBL:AAEX03002773
GeneID:479225 KEGG:cfa:479225 RefSeq:XP_536367.2
Ensembl:ENSCAFT00000021404 Uniprot:E2RFW5
Length = 1049
Score = 101 (40.6 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQ-SYLTSGKHGETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L S + P
Sbjct: 75 PEQVVALDA-QNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLLGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 83 (34.3 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 53 KDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA 110
K V GCG + + G + T G +D GQ L K + PE ++V +
Sbjct: 34 KKVRDVGCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVS 90
Query: 111 AGWAHCVSVTEAGEVYTWG 129
G AH +++ + G+VY WG
Sbjct: 91 CGEAHTLALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 68 (29.0 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V +IACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 68 (29.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
++A GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QVAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 54 (24.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ +VAAGG H+ +L+
Sbjct: 180 SPQLIKSLLGIPFMQVAAGGAHSFVLT 206
>UNIPROTKB|Q9UII4 [details] [associations]
symbol:HERC5 "E3 ISG15--protein ligase HERC5" species:9606
"Homo sapiens" [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:0032020 "ISG15-protein conjugation" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042296 "ISG15
ligase activity" evidence=IDA] [GO:0050688 "regulation of defense
response to virus" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 EMBL:AY337518
EMBL:AB027289 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005829
GO:GO:0005634 GO:GO:0048471 Reactome:REACT_6900 GO:GO:0000079
GO:GO:0045087 GO:GO:0019221 GO:GO:0051607 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
GO:GO:0032480 GO:GO:0050688 SUPFAM:SSF56204 eggNOG:COG5021
HOGENOM:HOG000208452 HOVERGEN:HBG050878 EMBL:AC083829 EMBL:BC140716
IPI:IPI00008821 RefSeq:NP_057407.2 UniGene:Hs.26663
ProteinModelPortal:Q9UII4 SMR:Q9UII4 DIP:DIP-44200N IntAct:Q9UII4
STRING:Q9UII4 PhosphoSite:Q9UII4 DMDM:296434523 PaxDb:Q9UII4
PRIDE:Q9UII4 Ensembl:ENST00000264350 GeneID:51191 KEGG:hsa:51191
UCSC:uc003hrt.3 CTD:51191 GeneCards:GC04P089378 H-InvDB:HIX0200636
HGNC:HGNC:24368 HPA:HPA043929 MIM:608242 neXtProt:NX_Q9UII4
PharmGKB:PA134973940 InParanoid:Q9UII4 OMA:KDWITNT
OrthoDB:EOG4N30N6 PhylomeDB:Q9UII4 GenomeRNAi:51191 NextBio:54182
ArrayExpress:Q9UII4 Bgee:Q9UII4 CleanEx:HS_HERC5
Genevestigator:Q9UII4 GermOnline:ENSG00000138646 GO:GO:0042296
GO:GO:0032020 Uniprot:Q9UII4
Length = 1024
Score = 94 (38.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 262 LEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
L H S KD P L+ +G N V+ +ACGG HSA++T G L TFG G +GQ
Sbjct: 225 LGHTES-KDDPSLI-EGLDNQK-------VEFVACGGSHSALLTQDGLLFTFGAGKHGQ 274
Score = 94 (38.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSG-KHGETPEPFPLPTEASVVKA--AAGWA 114
CG +LA S+ G+L WG + GQ L G K T P + A V A +AG A
Sbjct: 145 CGDYHSLALSKGGELFAWGQ-NLHGQ--LGVGRKFPSTTTPQIVEHLAGVPLAQISAGEA 201
Query: 115 HCVSVTEAGEVYTWGWREC 133
H ++++ +G +Y+WG EC
Sbjct: 202 HSMALSMSGNIYSWGKNEC 220
>UNIPROTKB|E2RFV1 [details] [associations]
symbol:HERC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:26091 KO:K10615 OMA:KLVIQPT
EMBL:AAEX03002773 RefSeq:XP_849808.1 Ensembl:ENSCAFT00000021413
GeneID:479225 KEGG:cfa:479225 NextBio:20854436 Uniprot:E2RFV1
Length = 1057
Score = 101 (40.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQ-SYLTSGKHGETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L S + P
Sbjct: 75 PEQVVALDA-QNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLLGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 53 KDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA 110
K V GCG + + G + T G +D GQ L K + PE ++V +
Sbjct: 34 KKVRDVGCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVS 90
Query: 111 AGWAHCVSVTEAGEVYTWG 129
G AH +++ + G+VY WG
Sbjct: 91 CGEAHTLALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 68 (29.0 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V +IACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 68 (29.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
++A GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QVAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 54 (24.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ +VAAGG H+ +L+
Sbjct: 180 SPQLIKSLLGIPFMQVAAGGAHSFVLT 206
>UNIPROTKB|E1BAV2 [details] [associations]
symbol:HERC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0007283 GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 CTD:26091 KO:K10615 OMA:KLVIQPT
EMBL:DAAA02061808 EMBL:DAAA02061809 EMBL:DAAA02061810
IPI:IPI00839181 RefSeq:NP_001070362.2 UniGene:Bt.15687
Ensembl:ENSBTAT00000018639 GeneID:533336 KEGG:bta:533336
NextBio:20876005 ArrayExpress:E1BAV2 Uniprot:E1BAV2
Length = 1057
Score = 101 (40.6 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQ-SYLTSGKHGETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L S + P
Sbjct: 75 PEQVVALDA-QNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLLGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 83 (34.3 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 53 KDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA 110
K V GCG + + G + T G +D GQ L K + PE ++V +
Sbjct: 34 KKVRDVGCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVS 90
Query: 111 AGWAHCVSVTEAGEVYTWG 129
G AH +++ + G+VY WG
Sbjct: 91 CGEAHTLALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 69 (29.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
+IA GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QIAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 68 (29.0 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V +IACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 53 (23.7 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ ++AAGG H+ +L+
Sbjct: 180 SPQLIKSLLGIPFMQIAAGGAHSFVLT 206
>MGI|MGI:1914595 [details] [associations]
symbol:Herc4 "hect domain and RLD 4" species:10090 "Mus
musculus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006464 "cellular protein modification process"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0016567 "protein ubiquitination" evidence=TAS] [GO:0016874
"ligase activity" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 MGI:MGI:1914595 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005829 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0007283 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00660000095216 HOVERGEN:HBG050878 HSSP:Q9UEP9
CTD:26091 KO:K10615 EMBL:AK009436 EMBL:AK143111 EMBL:AK145735
EMBL:AK147723 EMBL:BC026855 EMBL:BC043082 EMBL:BC047157
EMBL:BC060033 IPI:IPI00453903 IPI:IPI00554980 IPI:IPI00828240
RefSeq:NP_080377.2 RefSeq:NP_084390.1 UniGene:Mm.234437
UniGene:Mm.422789 UniGene:Mm.441725 UniGene:Mm.487274
ProteinModelPortal:Q6PAV2 SMR:Q6PAV2 STRING:Q6PAV2
PhosphoSite:Q6PAV2 PaxDb:Q6PAV2 PRIDE:Q6PAV2
Ensembl:ENSMUST00000020258 GeneID:67345 KEGG:mmu:67345
UCSC:uc007fka.2 UCSC:uc007fkc.2 UCSC:uc007fkd.2 InParanoid:Q6PAV2
OMA:KLVIQPT OrthoDB:EOG44XJG1 NextBio:324318 Bgee:Q6PAV2
CleanEx:MM_HERC4 Genevestigator:Q6PAV2 Uniprot:Q6PAV2
Length = 1057
Score = 100 (40.3 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L + P
Sbjct: 75 PEQVVALDA-QNIVAVACGEAHTLALNDKGQVYAWG-LDSDGQLGLQGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 53 KDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA 110
K V GCG + + G + T G +D GQ L K + PE ++V A
Sbjct: 34 KKVRDVGCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVA 90
Query: 111 AGWAHCVSVTEAGEVYTWG 129
G AH +++ + G+VY WG
Sbjct: 91 CGEAHTLALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 68 (29.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
++A GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QVAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 67 (28.6 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V ++ACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 54 (24.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ +VAAGG H+ +L+
Sbjct: 180 SPQLIKSLLGIPFMQVAAGGAHSFVLT 206
>RGD|1310971 [details] [associations]
symbol:Herc4 "HECT and RLD domain containing E3 ubiquitin
protein ligase 4" species:10116 "Rattus norvegicus" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA;IBA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005737 "cytoplasm" evidence=IBA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA;ISO;ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 UniPathway:UPA00143 RGD:1310971
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0007283 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 eggNOG:COG5021 GeneTree:ENSGT00660000095216
HOGENOM:HOG000208452 HOVERGEN:HBG050878 HSSP:Q9UEP9 CTD:26091
KO:K10615 OMA:KLVIQPT OrthoDB:EOG44XJG1 EMBL:BC087104
IPI:IPI00360837 RefSeq:NP_001012074.1 UniGene:Rn.18143
ProteinModelPortal:Q5PQN1 PhosphoSite:Q5PQN1 PRIDE:Q5PQN1
Ensembl:ENSRNOT00000051367 GeneID:309758 KEGG:rno:309758
UCSC:RGD:1310971 InParanoid:Q5PQN1 NextBio:661276
ArrayExpress:Q5PQN1 Genevestigator:Q5PQN1 Uniprot:Q5PQN1
Length = 1057
Score = 100 (40.3 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L + P
Sbjct: 75 PEQVVALDA-QNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLQGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 53 KDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA 110
K V GCG + + G + T G +D GQ L K + PE ++V +
Sbjct: 34 KKVRDVGCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVS 90
Query: 111 AGWAHCVSVTEAGEVYTWG 129
G AH +++ + G+VY WG
Sbjct: 91 CGEAHTLALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 68 (29.0 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V +IACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 68 (29.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
++A GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QVAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 54 (24.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ +VAAGG H+ +L+
Sbjct: 180 SPQLIKSLLGIPFMQVAAGGAHSFVLT 206
>FB|FBgn0035207 [details] [associations]
symbol:CG9153 species:7227 "Drosophila melanogaster"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] Pfam:PF00632
InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204
eggNOG:COG5021 HSSP:Q05086 EMBL:AY128479 ProteinModelPortal:Q8MQN4
SMR:Q8MQN4 PaxDb:Q8MQN4 PRIDE:Q8MQN4 FlyBase:FBgn0035207
InParanoid:Q8MQN4 OrthoDB:EOG4WDBSR ChiTaRS:CG9153
ArrayExpress:Q8MQN4 Bgee:Q8MQN4 Uniprot:Q8MQN4
Length = 1058
Score = 99 (39.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 60 CG--FALATSESGKLITWGSADDEGQ-SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
CG +LA S+ G++++WG +D GQ + T + + P+ +VV+ A G H
Sbjct: 97 CGSRHSLALSDWGQVLSWGD-NDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHS 155
Query: 117 VSVTEAGEVYTWG 129
+++T GE+Y+WG
Sbjct: 156 LALTSCGELYSWG 168
Score = 80 (33.2 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ---RMAKCLAGDGINMGSWV 337
S + ++ACG RH+ A+V G + FG G GQ R K L + +G WV
Sbjct: 302 STITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWV 354
Score = 75 (31.5 bits), Expect = 0.00098, Sum P(3) = 0.00098
Identities = 24/65 (36%), Positives = 30/65 (46%)
Query: 69 SGK-LITWGSADDEGQSYLTSGKHGE---TPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
SGK L WGS GQ L G E TP P + +V + A G H + +T G+
Sbjct: 3 SGKELYCWGSTS-HGQLGL-GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGK 60
Query: 125 VYTWG 129
VY G
Sbjct: 61 VYACG 65
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 294 IACGGRHSAVVTDAGALLTFGWG 316
IACGG HS +++ +GA+ FGWG
Sbjct: 203 IACGGNHSFLISKSGAV--FGWG 223
Score = 68 (29.0 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG S +T+ G + T G G YGQ
Sbjct: 252 VRFVACGDEFSVFLTNEGGVFTCGAGAYGQ 281
Score = 50 (22.7 bits), Expect = 0.00098, Sum P(3) = 0.00098
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
G + T P L+ I ++ G RH+L LSD
Sbjct: 73 GHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSD 107
Score = 48 (22.0 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILS 228
P +T G+ + +A GG H+ ++S
Sbjct: 189 PLRLTTLLGIPLAAIACGGNHSFLIS 214
>UNIPROTKB|Q5GLZ8 [details] [associations]
symbol:HERC4 "Probable E3 ubiquitin-protein ligase HERC4"
species:9606 "Homo sapiens" [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IBA] [GO:0007283
"spermatogenesis" evidence=ISS] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 UniPathway:UPA00143
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0007283 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0042787
SUPFAM:SSF56204 eggNOG:COG5021 HOGENOM:HOG000208452
HOVERGEN:HBG050878 EMBL:AY221963 EMBL:AY650032 EMBL:AY650033
EMBL:AY650034 EMBL:AB046813 EMBL:AL356741 EMBL:AC024258
EMBL:AL133551 EMBL:BC039600 IPI:IPI00333067 IPI:IPI00552050
IPI:IPI00604497 IPI:IPI00827523 IPI:IPI00827948 IPI:IPI00827992
RefSeq:NP_056416.2 RefSeq:NP_071362.1 UniGene:Hs.51891 HSSP:Q9UEP9
ProteinModelPortal:Q5GLZ8 SMR:Q5GLZ8 IntAct:Q5GLZ8 STRING:Q5GLZ8
PhosphoSite:Q5GLZ8 DMDM:74707832 PaxDb:Q5GLZ8 PRIDE:Q5GLZ8
DNASU:26091 Ensembl:ENST00000277817 Ensembl:ENST00000373700
Ensembl:ENST00000395187 Ensembl:ENST00000395198
Ensembl:ENST00000412272 Ensembl:ENST00000473533
Ensembl:ENST00000492996 GeneID:26091 KEGG:hsa:26091 UCSC:uc001jng.4
UCSC:uc001jnh.4 UCSC:uc001jnk.3 UCSC:uc009xpr.3 CTD:26091
GeneCards:GC10M069681 HGNC:HGNC:24521 HPA:HPA045453 MIM:609248
neXtProt:NX_Q5GLZ8 PharmGKB:PA134949021 InParanoid:Q5GLZ8 KO:K10615
ChiTaRS:HERC4 GenomeRNAi:26091 NextBio:48027 ArrayExpress:Q5GLZ8
Bgee:Q5GLZ8 CleanEx:HS_HERC4 Genevestigator:Q5GLZ8 Uniprot:Q5GLZ8
Length = 1057
Score = 101 (40.6 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 43 PARLCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFP 99
P ++ D+ +++ CG A LA ++ G++ WG D +GQ L + P
Sbjct: 75 PEQVVALDA-QNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLVGSEECIRVPRNIK 132
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
++ +V+ A G+ H +++++A EV+ WG
Sbjct: 133 SLSDIQIVQVACGYYHSLALSKASEVFCWG 162
Score = 82 (33.9 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
GCG + + G + T G +D GQ L K + PE ++V + G AH
Sbjct: 40 GCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVSCGEAHT 96
Query: 117 VSVTEAGEVYTWG 129
+++ + G+VY WG
Sbjct: 97 LALNDKGQVYAWG 109
Score = 73 (30.8 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I CG H+A +T G + TFG G YGQ
Sbjct: 247 ICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 71 (30.1 bits), Expect = 8.0e-06, Sum P(3) = 8.0e-06
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 289 SYVKEIACGGRH-SAVVTDAGALLTFGWGLYGQ 320
S V EIACG +H SA V +G + +FG G GQ
Sbjct: 294 SIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQ 326
Score = 68 (29.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
++A GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QVAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 52 (23.4 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP L+ G+ +VAAGG H+ +L+
Sbjct: 180 SPQLLKSLLGIPFMQVAAGGAHSFVLT 206
>TAIR|locus:504956339 [details] [associations]
symbol:RUG1 "AT5G08710" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008536 "Ran GTPase binding"
evidence=ISS] INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
EMBL:BT005498 EMBL:AK118882 IPI:IPI00533904 RefSeq:NP_680156.2
UniGene:At.45869 ProteinModelPortal:Q8GWF2 SMR:Q8GWF2 PRIDE:Q8GWF2
EnsemblPlants:AT5G08710.1 GeneID:830771 KEGG:ath:AT5G08710
TAIR:At5g08710 HOGENOM:HOG000006005 InParanoid:Q8GWF2 OMA:HSACIDE
PhylomeDB:Q8GWF2 ProtClustDB:CLSN2690903 Genevestigator:Q8GWF2
Uniprot:Q8GWF2
Length = 434
Score = 97 (39.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 34/106 (32%), Positives = 48/106 (45%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF--ALATSESGKLITWGSADDEGQSYLT 87
G S KS + P+ + G D KD+ G+ + A + G+L WG + GQ L
Sbjct: 115 GVSDVKSHAMDPL--EVSGLD--KDILHISAGYYHSAAITVDGELYMWGK-NSSGQ--LG 167
Query: 88 SGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
GK P EA ++ A G H V+VT+ GEV +WG
Sbjct: 168 LGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGGEVLSWG 213
Score = 82 (33.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 58 GGCGFALATSESGKLIT--WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH 115
G C +SESGK WGS D G+ L + TP ++ S+ A G AH
Sbjct: 35 GVCCSRWVSSESGKRFAAMWGSGD-YGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAH 93
Query: 116 CVSVTEAGEVYTWGWREC 133
+ +TE V+ G +C
Sbjct: 94 TLFLTETRRVFATGLNDC 111
Score = 79 (32.9 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 290 YVKEIACGGRHSAVVTDAGALLTFG 314
Y +E+ACGG H+ VVT G L T+G
Sbjct: 300 YAEEVACGGYHTCVVTRGGELYTWG 324
Score = 75 (31.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
E+ G D V V G S V +++CG +H+A ++D + T+GWG
Sbjct: 327 ENGCLGTDSTY-VSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNN-VFTWGWG 378
>UNIPROTKB|F1NCH3 [details] [associations]
symbol:HERC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
PROSITE:PS50237 SMART:SM00119 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
OMA:KLVIQPT EMBL:AADN02028016 IPI:IPI00586918
Ensembl:ENSGALT00000006135 ArrayExpress:F1NCH3 Uniprot:F1NCH3
Length = 1048
Score = 98 (39.6 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 53 KDVCGGGCGFA--LATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKA 109
+++ CG A LA ++ G++ WG A D GQ L + P +E +V+
Sbjct: 84 QNIVAVSCGEAHTLALNDKGQVYAWGLATD-GQLGLPGTEECIRVPRNIKSLSEIQIVQV 142
Query: 110 AAGWAHCVSVTEAGEVYTWG 129
A G+ H +++++ EV++WG
Sbjct: 143 ACGYYHSLALSKGSEVFSWG 162
Score = 80 (33.2 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
GCG + + G + T G +D GQ L K + PE ++V + G AH
Sbjct: 40 GCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKARKRPEHVGALDAQNIVAVSCGEAHT 96
Query: 117 VSVTEAGEVYTWG 129
+++ + G+VY WG
Sbjct: 97 LALNDKGQVYAWG 109
Score = 75 (31.5 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V I CG H+A +T G + TFG G YGQ
Sbjct: 244 VVHICCGEDHTAALTKEGGVFTFGAGGYGQ 273
Score = 69 (29.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGL--YGQ 320
+IA GG HS V+T +GA+ FGWG +GQ
Sbjct: 194 QIAAGGAHSFVLTLSGAI--FGWGRNKFGQ 221
Score = 61 (26.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 289 SYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
S V +I CG +H+ A V +G + +FG G GQ
Sbjct: 294 SLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQ 326
Score = 51 (23.0 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP ++ G+ ++AAGG H+ +L+
Sbjct: 180 SPHVIKSLLGIPFAQIAAGGAHSFVLT 206
>DICTYBASE|DDB_G0269934 [details] [associations]
symbol:DDB_G0269934 "Ras GTPase activation
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0051056 "regulation of small GTPase mediated signal
transduction" evidence=IEA] [GO:0043547 "positive regulation of
GTPase activity" evidence=IEA] [GO:0035023 "regulation of Rho
protein signal transduction" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005096 "GTPase activator activity" evidence=IEA]
[GO:0005089 "Rho guanyl-nucleotide exchange factor activity"
evidence=IEA] InterPro:IPR000219 InterPro:IPR001936
InterPro:IPR008936 Pfam:PF00616 Pfam:PF00621 PROSITE:PS50010
PROSITE:PS50018 SMART:SM00323 dictyBase:DDB_G0269934
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0007165 EMBL:AAFI02000005
GO:GO:0005096 GO:GO:0043547 SUPFAM:SSF48350 GO:GO:0005622
GO:GO:0005089 Gene3D:1.20.900.10 SUPFAM:SSF48065 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0035023 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 Gene3D:1.10.506.10 eggNOG:COG5261
RefSeq:XP_646416.1 ProteinModelPortal:Q55CR5
EnsemblProtists:DDB0233497 GeneID:8617373 KEGG:ddi:DDB_G0269934
InParanoid:Q55CR5 OMA:SHTEYEN Uniprot:Q55CR5
Length = 2044
Score = 102 (41.0 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 38/122 (31%), Positives = 57/122 (46%)
Query: 22 VYMWGYLPGTSPEKSPILS-P------IPARLCGGDSWKDVCGGGCGFA--LATSESGKL 72
VY+WG +P PIL P +P +L +S DV GF A +G+L
Sbjct: 770 VYLWGRGAVKTPAV-PILGIPQIEDQLLPFKL---ESLSDVVSVSIGFCHGAAVRANGEL 825
Query: 73 ITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWGW 130
+TWG ++ GQ L G EP + + S + + G H + +T+ G+VY+WG
Sbjct: 826 LTWGVGEN-GQ--LGHGDTNNQIEPKIIQSLTSFWITQVQCGEKHTICLTKNGKVYSWGA 882
Query: 131 RE 132
E
Sbjct: 883 SE 884
Score = 87 (35.7 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++I+CGGRH+A +TD+G + T G +GQ
Sbjct: 1008 IRQISCGGRHTAFLTDSGRIFTCGKDSFGQ 1037
Score = 86 (35.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 40/172 (23%), Positives = 68/172 (39%)
Query: 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVT 120
A+ S L+TWGSA + + + K P P LP + ++G + +T
Sbjct: 706 AIHLDTSRGLMTWGSASNCKLGFKVTAKDQSQPTPERLPNFNIPDICSISSGSYYSSVLT 765
Query: 121 EAGEVYTWGW----RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEV 176
E G+VY WG VP + + F+ +S ++ + RA E+
Sbjct: 766 ENGDVYLWGRGAVKTPAVPILGIPQIEDQLLPFKLESLSDVVSVSIGFCHGAAVRANGEL 825
Query: 177 VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
+ T E + GD + P ++ IT+V G +HT+ L+
Sbjct: 826 L----TWGVGENGQL-GHGDTNNQIEPKIIQSLTSFWITQVQCGEKHTICLT 872
>UNIPROTKB|Q9N1T2 [details] [associations]
symbol:RPGR "X-linked retinitis pigmentosa GTPase
regulator" species:9615 "Canis lupus familiaris" [GO:0036126 "sperm
flagellum" evidence=ISS] [GO:0036064 "cilium basal body"
evidence=ISS] [GO:0042073 "intraflagellar transport" evidence=ISS]
[GO:0042384 "cilium assembly" evidence=ISS] [GO:0005813
"centrosome" evidence=ISS] [GO:0007601 "visual perception"
evidence=ISS] [GO:0005794 "Golgi apparatus" evidence=ISS]
[GO:0035085 "cilium axoneme" evidence=IEA] [GO:0050896 "response to
stimulus" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005794 GO:GO:0005813 GO:GO:0007601 GO:GO:0050896
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005085
GO:GO:0042384 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0042073 eggNOG:COG5184 GO:GO:0036064
GO:GO:0036126 EMBL:AF148798 EMBL:AF148799 EMBL:AF148800
EMBL:AF148801 RefSeq:NP_001003126.1 UniGene:Cfa.3592
ProteinModelPortal:Q9N1T2 STRING:Q9N1T2 GeneID:403726
KEGG:cfa:403726 CTD:6103 HOGENOM:HOG000231314 HOVERGEN:HBG026899
InParanoid:Q9N1T2 NextBio:20817229 Uniprot:Q9N1T2
Length = 1003
Score = 87 (35.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G + A +E G+L WG + EGQ L + + P+ + S + + G+ H
Sbjct: 148 GSNTSAALTEDGELFMWGD-NSEGQIGLENVTNVCVPQQVTVGKPISWI--SCGYYHSAF 204
Query: 119 VTEAGEVYTWGWREC 133
VT G++YT+G EC
Sbjct: 205 VTTEGQLYTFGEPEC 219
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
IACG H+A++TD G + TFG G +G+
Sbjct: 300 IACGENHTALITDMGLMYTFGDGRHGK 326
Score = 78 (32.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++ACGG H+ V+T+ A+ TFG G +GQ
Sbjct: 245 VVQVACGGGHTVVLTEK-AVYTFGLGQFGQ 273
Score = 73 (30.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 30/107 (28%), Positives = 45/107 (42%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWK-DVCGGGCGFALATSESGKLITWGSADDEGQ 83
WG L G KS + P + + K CG L ++E GK+ G ++EGQ
Sbjct: 64 WGQL-GLG-SKSTVSKPTCVKALKPEKVKFAACGRN--HTLVSTEGGKVYAAGG-NNEGQ 118
Query: 84 SYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHCVSVTEAGEVYTWG 129
L + T T +K +AG ++TE GE++ WG
Sbjct: 119 LGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWG 165
Score = 56 (24.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 210 PGV--KITKVAAGGRHTLILSD 229
PG+ K+ +VA GG HT++L++
Sbjct: 239 PGIPGKVVQVACGGGHTVVLTE 260
>UNIPROTKB|O95199 [details] [associations]
symbol:RCBTB2 "RCC1 and BTB domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0005087 "Ran guanyl-nucleotide
exchange factor activity" evidence=TAS] InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CH471075 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005087 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
HOVERGEN:HBG053261 KO:K11494 EMBL:AF060219 EMBL:AY341245
EMBL:AK315703 EMBL:AL157813 EMBL:BC029052 IPI:IPI00658195
IPI:IPI00941277 PIR:T50663 RefSeq:NP_001259.1 UniGene:Hs.652712
ProteinModelPortal:O95199 SMR:O95199 IntAct:O95199
MINT:MINT-1481780 STRING:O95199 PhosphoSite:O95199 PRIDE:O95199
DNASU:1102 Ensembl:ENST00000344532 GeneID:1102 KEGG:hsa:1102
UCSC:uc001vch.3 CTD:1102 GeneCards:GC13M049063 HGNC:HGNC:1914
HPA:HPA040242 MIM:603524 neXtProt:NX_O95199 PharmGKB:PA26450
InParanoid:O95199 OrthoDB:EOG4M91R6 PhylomeDB:O95199 ChiTaRS:RCBTB2
GenomeRNAi:1102 NextBio:4558 ArrayExpress:O95199 Bgee:O95199
CleanEx:HS_RCBTB2 Genevestigator:O95199 GermOnline:ENSG00000136161
Uniprot:O95199
Length = 551
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/113 (31%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S + PIP R+ G K V CG +A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282
Score = 92 (37.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGY-NNSGQ--VGSGSTVNQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ VV A G C++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY 231
Score = 71 (30.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQVYAWGANSYGQ 288
Score = 70 (29.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+PC V G+++ +VA G HTL+L+D
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTD 274
>UNIPROTKB|F1PV11 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097
SMART:SM00225 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104208 CTD:55213 KO:K11494 OMA:NCSNCLG
EMBL:AAEX03013105 RefSeq:XP_542558.2 Ensembl:ENSCAFT00000006979
GeneID:485440 KEGG:cfa:485440 Uniprot:F1PV11
Length = 531
Score = 104 (41.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S ++ LCG K + G L ++E G + WG G S L +G
Sbjct: 55 GTGDNQSTLVPKKLEALCG-KKIKSLSYGSGPHVLLSTEDGVVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T VV+ A G H +++ GEV+ WG+ C
Sbjct: 111 TTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNC 157
Score = 89 (36.4 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 33/116 (28%), Positives = 50/116 (43%)
Query: 21 VVYMWGYLPGTSPEKSPILSPI-PARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VVY WG+ + I P ++C K V CG ++A + G++ WG
Sbjct: 95 VVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V + GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTTNQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWGY 207
Score = 69 (29.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
Score = 53 (23.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYG 319
IACG S V D G + +GWG G
Sbjct: 186 IACGQTSSMAVLDNGEV--YGWGYNG 209
>UNIPROTKB|I3LCV3 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GeneTree:ENSGT00700000104208 OMA:NCSNCLG
EMBL:FP325140 Ensembl:ENSSSCT00000023143 Uniprot:I3LCV3
Length = 560
Score = 104 (41.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S ++ LCG K + G L ++E G + WG G S L +G
Sbjct: 84 GTGDNQSTLVPKKLEALCG-KKIKSLSYGSGPHVLLSTEDGVVYAWGH---NGYSQLGNG 139
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T VV+ A G H +++ GEV+ WG+ C
Sbjct: 140 TTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNC 186
Score = 93 (37.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 33/116 (28%), Positives = 50/116 (43%)
Query: 21 VVYMWGYLPGTSPEKSPILSPI-PARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VVY WG+ + I P ++C K V CG ++A + G++ WG
Sbjct: 124 VVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGY 183
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V + GEVY WG+
Sbjct: 184 -NNCGQ--VGSGSTANQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGY 236
Score = 69 (29.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 264 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 293
Score = 55 (24.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYG 319
V IACG S V D G + +GWG G
Sbjct: 212 VVSIACGQTSSMAVLDNGEV--YGWGYNG 238
>MGI|MGI:1918580 [details] [associations]
symbol:Rcbtb1 "regulator of chromosome condensation (RCC1)
and BTB (POZ) domain containing protein 1" species:10090 "Mus
musculus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] InterPro:IPR000210 InterPro:IPR013069
Pfam:PF00651 PROSITE:PS50097 SMART:SM00225 MGI:MGI:1918580
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0007049 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00625
PROSITE:PS00626 PROSITE:PS50012 eggNOG:COG5184
GeneTree:ENSGT00700000104208 CTD:55213 HOGENOM:HOG000065752
HOVERGEN:HBG053261 KO:K11494 OrthoDB:EOG4MSCXX EMBL:AK033501
EMBL:AK088299 EMBL:BC067005 IPI:IPI00469440 RefSeq:NP_082040.2
UniGene:Mm.234195 ProteinModelPortal:Q6NXM2 SMR:Q6NXM2
IntAct:Q6NXM2 STRING:Q6NXM2 PhosphoSite:Q6NXM2 PaxDb:Q6NXM2
PRIDE:Q6NXM2 Ensembl:ENSMUST00000022551 Ensembl:ENSMUST00000043227
GeneID:71330 KEGG:mmu:71330 UCSC:uc007ueb.2 InParanoid:Q6NXM2
NextBio:333557 Bgee:Q6NXM2 Genevestigator:Q6NXM2
GermOnline:ENSMUSG00000035469 Uniprot:Q6NXM2
Length = 531
Score = 103 (41.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 29/107 (27%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S ++ LCG K + G L T+E G + WG G S L +G
Sbjct: 55 GTGDNQSTLVPKKLEALCG-KKIKSLSYGSGPHVLLTTEDGVVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T V++ A G H +++ GE++ WG+ C
Sbjct: 111 TTNQGIAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNC 157
Score = 102 (41.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 34/116 (29%), Positives = 51/116 (43%)
Query: 21 VVYMWGYLPGTSPEKSPILSPI-PARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VVY WG+ + I P ++C K V CG ++A + G+L WG
Sbjct: 95 VVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V ++GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGY 207
Score = 69 (29.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
Score = 58 (25.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYG 319
V IACG S V D+G + +GWG G
Sbjct: 183 VVNIACGQTSSMAVLDSGEV--YGWGYNG 209
>MGI|MGI:1917200 [details] [associations]
symbol:Rcbtb2 "regulator of chromosome condensation (RCC1)
and BTB (POZ) domain containing protein 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651
PROSITE:PS50097 SMART:SM00225 MGI:MGI:1917200 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GeneTree:ENSGT00700000104208 HOGENOM:HOG000065752
HOVERGEN:HBG053261 KO:K11494 CTD:1102 OrthoDB:EOG4M91R6
ChiTaRS:RCBTB2 EMBL:AK031242 EMBL:AK031248 EMBL:AK160881
EMBL:BC003224 IPI:IPI00308981 IPI:IPI00661148 RefSeq:NP_001164165.1
RefSeq:NP_598844.3 UniGene:Mm.280068 ProteinModelPortal:Q99LJ7
SMR:Q99LJ7 STRING:Q99LJ7 PhosphoSite:Q99LJ7 PaxDb:Q99LJ7
PRIDE:Q99LJ7 Ensembl:ENSMUST00000022702 Ensembl:ENSMUST00000110952
Ensembl:ENSMUST00000164822 Ensembl:ENSMUST00000169479
Ensembl:ENSMUST00000169513 Ensembl:ENSMUST00000170677 GeneID:105670
KEGG:mmu:105670 UCSC:uc007upj.2 UCSC:uc007upm.2 InParanoid:Q99LJ7
OMA:QMCSMAV NextBio:357822 Bgee:Q99LJ7 Genevestigator:Q99LJ7
GermOnline:ENSMUSG00000022106 Uniprot:Q99LJ7
Length = 551
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 35/113 (30%), Positives = 51/113 (45%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S PIP R+ G K V CG ++A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282
Score = 90 (36.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS---VVKAAAGW 113
G G LAT++ G++ TWG S L +G P + T S V++ A G
Sbjct: 106 GSGPHIVLATTD-GEVFTWGH---NAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGS 161
Query: 114 AHCVSVTEAGEVYTWGW 130
H + +T GEV+ WG+
Sbjct: 162 YHSLVLTSDGEVFAWGY 178
Score = 72 (30.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQIYAWGANSYGQ 288
Score = 70 (29.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+PC V G+++ +VA G HTL+L+D
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTD 274
>RGD|1308467 [details] [associations]
symbol:Rcbtb1 "regulator of chromosome condensation (RCC1) and
BTB (POZ) domain containing protein 1" species:10116 "Rattus
norvegicus" [GO:0005737 "cytoplasm" evidence=IEA;ISO]
InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097
SMART:SM00225 RGD:1308467 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005737 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 EMBL:CH474049
GeneTree:ENSGT00700000104208 CTD:55213 KO:K11494 OMA:NCSNCLG
OrthoDB:EOG4MSCXX IPI:IPI00364409 RefSeq:NP_001101850.1
UniGene:Rn.229110 Ensembl:ENSRNOT00000037800 GeneID:361050
KEGG:rno:361050 UCSC:RGD:1308467 NextBio:675026 Uniprot:D4AD40
Length = 531
Score = 102 (41.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 34/116 (29%), Positives = 51/116 (43%)
Query: 21 VVYMWGYLPGTSPEKSPILSPI-PARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VVY WG+ + I P ++C K V CG ++A + G+L WG
Sbjct: 95 VVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLVKQVVEVACGSHHSMALAADGELFAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V ++GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRKVTNCLHTKKVVNIACGQTSSMAVLDSGEVYGWGY 207
Score = 100 (40.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 29/107 (27%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S ++ LCG K + G L ++E G + WG G S L +G
Sbjct: 55 GTGDNQSTLVPKKLEALCG-KRIKSLSYGSGPHVLLSTEDGVVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T VV+ A G H +++ GE++ WG+ C
Sbjct: 111 TTNQGIAPIQVCTNLLVKQVVEVACGSHHSMALAADGELFAWGYNNC 157
Score = 69 (29.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
Score = 58 (25.5 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYG 319
V IACG S V D+G + +GWG G
Sbjct: 183 VVNIACGQTSSMAVLDSGEV--YGWGYNG 209
>UNIPROTKB|Q8NDN9 [details] [associations]
symbol:RCBTB1 "RCC1 and BTB domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000210 InterPro:IPR013069
Pfam:PF00651 PROSITE:PS50097 SMART:SM00225 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0007049 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 eggNOG:COG5184 EMBL:AL139321 EMBL:AF334406
EMBL:AJ319660 EMBL:AK096654 EMBL:AL833821 EMBL:BC038104
IPI:IPI00329626 IPI:IPI00973193 RefSeq:NP_060661.3
UniGene:Hs.508021 ProteinModelPortal:Q8NDN9 SMR:Q8NDN9
IntAct:Q8NDN9 MINT:MINT-4718485 STRING:Q8NDN9 PhosphoSite:Q8NDN9
DMDM:74751227 PRIDE:Q8NDN9 DNASU:55213 Ensembl:ENST00000258646
Ensembl:ENST00000378302 Ensembl:ENST00000546015 GeneID:55213
KEGG:hsa:55213 UCSC:uc001vde.1 CTD:55213 GeneCards:GC13M050106
HGNC:HGNC:18243 HPA:HPA045925 MIM:607867 neXtProt:NX_Q8NDN9
PharmGKB:PA134955699 HOGENOM:HOG000065752 HOVERGEN:HBG053261
InParanoid:Q8NDN9 KO:K11494 OMA:NCSNCLG OrthoDB:EOG4MSCXX
PhylomeDB:Q8NDN9 GenomeRNAi:55213 NextBio:59164 ArrayExpress:Q8NDN9
Bgee:Q8NDN9 CleanEx:HS_RCBTB1 Genevestigator:Q8NDN9
GermOnline:ENSG00000136144 Uniprot:Q8NDN9
Length = 531
Score = 102 (41.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S ++ LCG K + G L ++E G + WG G S L +G
Sbjct: 55 GTGDNQSTLVPKKLEGLCG-KKIKSLSYGSGPHVLLSTEDGVVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T VV+ A G H +++ GEV+ WG+ C
Sbjct: 111 TTNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNC 157
Score = 92 (37.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 33/116 (28%), Positives = 50/116 (43%)
Query: 21 VVYMWGYLPGTSPEKSPILSPI-PARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VVY WG+ + I P ++C K V CG ++A + G++ WG
Sbjct: 95 VVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V + GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWGY 207
Score = 69 (29.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
>UNIPROTKB|E1BKF7 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000210
InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GeneTree:ENSGT00700000104208 CTD:55213 KO:K11494
OMA:NCSNCLG EMBL:DAAA02032915 EMBL:DAAA02032914 IPI:IPI00826911
RefSeq:NP_001178141.1 UniGene:Bt.22187 Ensembl:ENSBTAT00000035796
GeneID:785222 KEGG:bta:785222 NextBio:20927167 Uniprot:E1BKF7
Length = 531
Score = 102 (41.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/107 (28%), Positives = 45/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT S ++ LCG K + G L ++E G + WG G S L +G
Sbjct: 55 GTGDNHSTLVPKKLEALCG-KKIKSLSYGSGPHVLLSTEDGVVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T VV+ A G H +++ GEV+ WG+ C
Sbjct: 111 TTNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNC 157
Score = 91 (37.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 21 VVYMWGYLPGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VVY WG+ G S + + P ++C K V CG ++A + G++ WG
Sbjct: 95 VVYAWGH-NGYSQLGNGTTNQGLAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWG 153
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + VV A G ++V + GEVY WG+
Sbjct: 154 Y-NNCGQ--VGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWGY 207
Score = 69 (29.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +I CG H+ +TD G L +G YGQ
Sbjct: 235 VNQIVCGYAHTLALTDEGLLYAWGANTYGQ 264
>UNIPROTKB|F1PBB3 [details] [associations]
symbol:HERC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:HIFAGTY EMBL:AAEX03016752
EMBL:AAEX03016750 EMBL:AAEX03016751 Ensembl:ENSCAFT00000015531
Uniprot:F1PBB3
Length = 1018
Score = 95 (38.5 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPE-PFPLPT--EASVVKAAAGWA 114
CG +LA G++ WG A EGQ L +G+ ET P + T + + + + G
Sbjct: 83 CGKEHSLAVCHKGRVFAWG-AGSEGQ--LGTGEFKETNLIPMKIKTLNDIKIKQVSCGHY 139
Query: 115 HCVSVTEAGEVYTWG 129
H ++++E G+V++WG
Sbjct: 140 HSLALSEGGQVFSWG 154
Score = 70 (29.7 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+ V+T G + TFG YGQ
Sbjct: 242 ISCGYEHTVVLTQNGKVFTFGDNTYGQ 268
Score = 53 (23.7 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILS 228
SP V G+ + +VAAGG H+ LS
Sbjct: 172 SPQRVRSLDGIPLAQVAAGGAHSFALS 198
>UNIPROTKB|E1BVG2 [details] [associations]
symbol:RCBTB1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097
SMART:SM00225 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104208 OMA:NCSNCLG EMBL:AADN02005390
IPI:IPI00590638 Ensembl:ENSGALT00000027473 Uniprot:E1BVG2
Length = 531
Score = 100 (40.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S I+ LCG G G L T E G++ WG G S L +G
Sbjct: 55 GTGDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCT-EDGEVYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEA---SVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T V++ A G H ++++ G++Y WG+ C
Sbjct: 111 ATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGYNNC 157
Score = 92 (37.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 35/116 (30%), Positives = 50/116 (43%)
Query: 22 VYMWGYLPGTSPEKSPILSP--IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGS 77
VY WG+ G S + + P ++C K V CG ++A S G L WG
Sbjct: 96 VYAWGH-NGYSQLGNGATNQGVTPVQVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGY 154
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPT---EASVVKAAAGWAHCVSVTEAGEVYTWGW 130
++ GQ + SG P P + + VV A G ++V GEVY WG+
Sbjct: 155 -NNCGQ--VGSGSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGY 207
Score = 70 (29.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ +IACG H+ +TD G L +G YGQ
Sbjct: 235 ILQIACGYAHTLALTDEGLLYAWGANTYGQ 264
Score = 64 (27.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSD 229
L+PC V GV I ++A G HTL L+D
Sbjct: 222 LTPCRVAALHGVCILQIACGYAHTLALTD 250
>ZFIN|ZDB-GENE-090313-139 [details] [associations]
symbol:herc3 "hect domain and RLD 3" species:7955
"Danio rerio" [GO:0006464 "cellular protein modification process"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-090313-139
GO:GO:0016567 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00660000095216 CTD:8916 HOGENOM:HOG000208452
HOVERGEN:HBG050878 OMA:SPAVDFR OrthoDB:EOG4RBQHS EMBL:CU467858
IPI:IPI00901161 RefSeq:NP_001139096.1 UniGene:Dr.86009
Ensembl:ENSDART00000112994 Ensembl:ENSDART00000141977
GeneID:100003587 NextBio:20785898 Uniprot:B8JLD4
Length = 1046
Score = 104 (41.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 38/186 (20%), Positives = 67/186 (36%)
Query: 46 LCGGDSWKDVCGGGCGFA--LATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPT 102
L G + + G CG A LA +E G++ WG A D GQ L + + P
Sbjct: 77 LVGALDAQKISGVSCGQAHSLAVNEQGQVFAWG-AGDGGQLGLGTAEEAVRVPRLIKKLC 135
Query: 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162
E + + G HC+++++ G+++ WG S ++ G + +P
Sbjct: 136 EHRISQVMCGNHHCIALSKDGQLFVWGENS---SGQLGLGKGEPSTLSPQPLKSLCGIPL 192
Query: 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGR 222
Q + + + DE PC + K+ ++ G
Sbjct: 193 TQISAGGDHSFALSFSGAVFGWGKNSAGQLGLNDEQDRAVPCHIKFLRSQKVVYISCGEE 252
Query: 223 HTLILS 228
HT L+
Sbjct: 253 HTAALT 258
Score = 71 (30.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+A +T G L TFG G GQ
Sbjct: 247 ISCGEEHTAALTKEGGLFTFGNGSKGQ 273
>UNIPROTKB|H0YEL8 [details] [associations]
symbol:SERGEF "Secretion-regulating guanine nucleotide
exchange factor" species:9606 "Homo sapiens" [GO:0050709 "negative
regulation of protein secretion" evidence=IEA] InterPro:IPR027048
INTERPRO:IPR000408 Pfam:PF00415 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 PANTHER:PTHR22870:SF7 HGNC:HGNC:17499 EMBL:AC055860
EMBL:AC124058 EMBL:AC124078 Ensembl:ENST00000529151 Uniprot:H0YEL8
Length = 299
Score = 99 (39.9 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 43 PARLCGGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP 101
P+R+ G ++ K +C G + + +++G++ WGS + GQ + + P P +
Sbjct: 67 PSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGS-NKHGQ---LANEAAFLPVPQKIE 122
Query: 102 TEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
V +GW H V+ TE G+++TWG
Sbjct: 123 AHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG 154
Score = 61 (26.5 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSW 336
E++CG H+ + G ++GW +G C GDG W
Sbjct: 201 EVSCGSEHNLAII-GGVCYSWGWNEHGM----C--GDGTEANVW 237
>TAIR|locus:2165770 [details] [associations]
symbol:AT5G42140 "AT5G42140" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0008536 "Ran GTPase binding" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007165 "signal
transduction" evidence=ISS] [GO:0035091 "phosphatidylinositol
binding" evidence=ISS] InterPro:IPR000306 Pfam:PF01363
SMART:SM00064 INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0046872 EMBL:AB017067 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 Gene3D:3.30.40.10 InterPro:IPR017455
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 InterPro:IPR013591 Pfam:PF08381 PROSITE:PS51514
HSSP:Q15075 ProtClustDB:CLSN2686442 IPI:IPI00533393
RefSeq:NP_199029.1 UniGene:At.28039 ProteinModelPortal:Q9FHX1
SMR:Q9FHX1 PRIDE:Q9FHX1 EnsemblPlants:AT5G42140.1 GeneID:834219
KEGG:ath:AT5G42140 TAIR:At5g42140 HOGENOM:HOG000240974
InParanoid:Q9FHX1 OMA:RNEVFTW PhylomeDB:Q9FHX1
Genevestigator:Q9FHX1 Uniprot:Q9FHX1
Length = 1073
Score = 99 (39.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 35/106 (33%), Positives = 46/106 (43%)
Query: 26 GYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF--ALATSESGKLITWGSADDEGQ 83
GYL G+ +S +L P P + DV CG A S G++ TWG A G+
Sbjct: 252 GYL-GS---RSDVLIPKPLE---SNVVLDVHHIACGVKHAALVSRQGEVFTWGEASG-GR 303
Query: 84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
GK P+ S+ A G H +VT GE+YTWG
Sbjct: 304 LGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCAVTMTGEIYTWG 349
Score = 75 (31.5 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 283 SGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
SG + ++CG H+A++T G L TFG G +G
Sbjct: 373 SGPLEGLQIASVSCGPWHTALITSTGQLFTFGDGTFG 409
Score = 71 (30.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
K + V+EIACG H AV+T + T+G G G+
Sbjct: 542 KLTKDCVEEIACGAYHVAVLTSRNEVFTWGKGANGR 577
>UNIPROTKB|F1S098 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 INTERPRO:IPR000408 Pfam:PF00415 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
CTD:8925 KO:K10594 OMA:HHYQDGI GeneTree:ENSGT00700000104312
EMBL:CU550694 EMBL:CU582937 RefSeq:XP_001927286.4 UniGene:Ssc.96208
UniGene:Ssc.97542 Ensembl:ENSSSCT00000005038 GeneID:100153537
KEGG:ssc:100153537 Uniprot:F1S098
Length = 4859
Score = 106 (42.4 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHC 116
G G LA + G++ +WG D + S + P+ P + VV +AG+ H
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQ-KYPKLIQGPLQGKVVVCVSAGYRHS 523
Query: 117 VSVTEAGEVYTWG 129
+VTE GE+YTWG
Sbjct: 524 AAVTEDGELYTWG 536
Score = 85 (35.0 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4134 VVQMSCGFKHSAVVTSDGKLFTFGNGDYGR 4163
Score = 42 (19.8 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 158 SALPTEQA--PPSDK---RAGEEVVKRRKTSSAREESENPAS 194
+ LPT +A PP +EV +R+ +S +S PA+
Sbjct: 2690 TVLPTRRAQTPPISSLPTSPSDEVGRRQSLTSPDSQSARPAN 2731
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCL 205
+E+ KRR+ + S + + G T S L
Sbjct: 1461 DELQKRREEGQLHQPSTSASEGGGLMTRSESL 1492
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
E L P L+ +I ++ G H L LS
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALS 681
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 174 EEVVKRRKTSSAREESEN-PASGDEFFT-LSPCLVTLNPGVKITKVAAGGR 222
E+ +K +K EE EN P F + C + N G +T +GG+
Sbjct: 2008 EQEIKLQKQGELEEEDENLPIQEVSFDPEKAQCCIVEN-GQILTH-GSGGK 2056
>UNIPROTKB|Q15751 [details] [associations]
symbol:HERC1 "Probable E3 ubiquitin-protein ligase HERC1"
species:9606 "Homo sapiens" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0005086 "ARF
guanyl-nucleotide exchange factor activity" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=TAS] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 UniPathway:UPA00143 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005829 GO:GO:0005794 GO:GO:0016020 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0006810
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0005086
SUPFAM:SSF56204 eggNOG:COG5021 EMBL:U50078 EMBL:AC073167
EMBL:AC118274 EMBL:BC040929 IPI:IPI00022479 PIR:S71752
RefSeq:NP_003913.3 UniGene:Hs.210385 HSSP:Q922Y1
ProteinModelPortal:Q15751 SMR:Q15751 IntAct:Q15751 STRING:Q15751
PhosphoSite:Q15751 DMDM:296434522 PaxDb:Q15751 PRIDE:Q15751
Ensembl:ENST00000443617 GeneID:8925 KEGG:hsa:8925 UCSC:uc002amp.3
CTD:8925 GeneCards:GC15M063900 HGNC:HGNC:4867 HPA:HPA049749
MIM:605109 neXtProt:NX_Q15751 PharmGKB:PA29242 HOGENOM:HOG000168589
HOVERGEN:HBG053919 InParanoid:Q15751 KO:K10594 OMA:HHYQDGI
OrthoDB:EOG40GCPW GenomeRNAi:8925 NextBio:33556 ArrayExpress:Q15751
Bgee:Q15751 CleanEx:HS_HERC1 Genevestigator:Q15751 Uniprot:Q15751
Length = 4861
Score = 106 (42.4 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHC 116
G G LA + G++ +WG D + S + P+ P + VV +AG+ H
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQ-KYPKLIQGPLQGKVVVCVSAGYRHS 523
Query: 117 VSVTEAGEVYTWG 129
+VTE GE+YTWG
Sbjct: 524 AAVTEDGELYTWG 536
Score = 85 (35.0 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4136 VVQMSCGFKHSAVVTSDGKLFTFGNGDYGR 4165
Score = 42 (19.8 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 158 SALPTEQA--PPSDK---RAGEEVVKRRKTSSAREESENPAS 194
+ LPT +A PP +EV +R+ +S +S PA+
Sbjct: 2692 TVLPTRRAQTPPISSLPTSPSDEVGRRQSLTSPDSQSARPAN 2733
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCL 205
+E+ KRR+ ++ S + + G T S L
Sbjct: 1461 DELQKRREEGQLQQPSTSASEGGGLMTRSESL 1492
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
E L P L+ +I V+ G H L LS
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALS 681
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 175 EVVKRRKTSSAREESENPASGD 196
E+++ R +S R SEN S D
Sbjct: 1314 ELIQTRSSSRDRWISENQDSAD 1335
>UNIPROTKB|E2QYQ5 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR017986 InterPro:IPR000569
InterPro:IPR001680 InterPro:IPR003877 InterPro:IPR015943
Pfam:PF00400 Pfam:PF00622 PROSITE:PS50082 PROSITE:PS50237
PROSITE:PS50294 SMART:SM00119 SMART:SM00320 INTERPRO:IPR000408
Pfam:PF00415 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0016567 GO:GO:0005622 InterPro:IPR008985
SUPFAM:SSF49899 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 SUPFAM:SSF56204 OMA:HHYQDGI
GeneTree:ENSGT00700000104312 EMBL:AAEX03016202
Ensembl:ENSCAFT00000026962 Uniprot:E2QYQ5
Length = 4863
Score = 106 (42.4 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHC 116
G G LA + G++ +WG D + S + P+ P + VV +AG+ H
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQ-KYPKLIQGPLQGKVVVCVSAGYRHS 523
Query: 117 VSVTEAGEVYTWG 129
+VTE GE+YTWG
Sbjct: 524 AAVTEDGELYTWG 536
Score = 85 (35.0 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4137 VVQMSCGFKHSAVVTSDGKLFTFGNGDYGR 4166
Score = 42 (19.8 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 158 SALPTEQA--PPSDK---RAGEEVVKRRKTSSAREESENPAS 194
+ LPT +A PP +EV +R+ +S +S PA+
Sbjct: 2693 TVLPTRRAQTPPISSLPTSPSDEVGRRQSLTSPDSQSARPAN 2734
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 174 EEVVKRRKTSSAREESEN 191
E+ +K +K EE EN
Sbjct: 2011 EQEIKSQKQGELEEEDEN 2028
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 175 EVVKRRKTSSAREESENPASGD 196
E+++ R +S R SEN S D
Sbjct: 1315 ELIQTRSSSRDRWISENQDSAD 1336
>UNIPROTKB|F1MNS0 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] Pfam:PF00632
InterPro:IPR017986 InterPro:IPR000569 InterPro:IPR001680
InterPro:IPR003877 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 INTERPRO:IPR000408 Pfam:PF00415 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0016567
GO:GO:0005622 InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
OMA:HHYQDGI GeneTree:ENSGT00700000104312 EMBL:DAAA02028744
EMBL:DAAA02028745 EMBL:DAAA02028746 IPI:IPI00924381
Ensembl:ENSBTAT00000061038 ArrayExpress:F1MNS0 Uniprot:F1MNS0
Length = 4857
Score = 106 (42.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHC 116
G G LA + G++ +WG D + S + P+ P + VV +AG+ H
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQ-KYPKLIQGPLQGKVVVCVSAGYRHS 523
Query: 117 VSVTEAGEVYTWG 129
+VTE GE+YTWG
Sbjct: 524 AAVTEDGELYTWG 536
Score = 85 (35.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4131 VVQMSCGFKHSAVVTSDGKLFTFGNGDYGR 4160
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCL 205
EE+ KRR+ ++ S + + G T S L
Sbjct: 1461 EELQKRREEGQLQQPSTSTSEGGGLMTRSESL 1492
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 175 EVVKRRKTSSAREESENPASGD 196
E+++ R +S R SEN S D
Sbjct: 1314 ELIQTRSSSRDRWISENQDSAD 1335
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
E L P L+ +I ++ G H L LS
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALS 681
Score = 37 (18.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 174 EEVVKRRKTSSAREESEN-PASGDEFFT-LSPCLVTLNPGVKITKVAAGGR 222
E+ +K +K EE EN P F + C + N G +T +GG+
Sbjct: 2007 EQEIKLQKQGELEEEDENLPIQEVSFDPEKAQCCIVEN-GQILTH-GSGGK 2055
>TAIR|locus:505006603 [details] [associations]
symbol:AT5G12350 "AT5G12350" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0008536 "Ran GTPase binding" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009630 "gravitropism" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0010638 "positive regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0042546 "cell wall
biogenesis" evidence=RCA] [GO:0044036 "cell wall macromolecule
metabolic process" evidence=RCA] [GO:0045492 "xylan biosynthetic
process" evidence=RCA] InterPro:IPR000306 InterPro:IPR001849
InterPro:IPR024774 Pfam:PF01363 Pfam:PF12814 SMART:SM00064
SMART:SM00233 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005886
GO:GO:0005938 EMBL:CP002688 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0046872 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.30.40.10
InterPro:IPR017455 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0032065 InterPro:IPR013591 Pfam:PF08381
PROSITE:PS51514 IPI:IPI00540281 RefSeq:NP_568268.3 UniGene:At.22310
UniGene:At.51056 ProteinModelPortal:F4K0X5 SMR:F4K0X5
EnsemblPlants:AT5G12350.1 GeneID:831110 KEGG:ath:AT5G12350
OMA:NTNGHPR Uniprot:F4K0X5
Length = 1075
Score = 91 (37.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 290 YVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
+V IACG H+AVVT AG L TFG G +G
Sbjct: 414 HVSSIACGPYHTAVVTSAGQLFTFGDGTFG 443
Score = 82 (33.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH 115
CGG A+ ++ G+ +WG + EG+ + + P+ ++ A G H
Sbjct: 315 CGGQ--HAVLVTKQGESFSWGE-ESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFH 371
Query: 116 CVSVTEAGEVYTWG 129
+VT +G++YTWG
Sbjct: 372 SCAVTLSGDLYTWG 385
>ZFIN|ZDB-GENE-030131-7951 [details] [associations]
symbol:rcbtb1 "regulator of chromosome
condensation (RCC1) and BTB (POZ) domain containing protein 1"
species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651
PROSITE:PS50097 SMART:SM00225 INTERPRO:IPR000408 Pfam:PF00415
ZFIN:ZDB-GENE-030131-7951 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
CTD:55213 HOVERGEN:HBG053261 KO:K11494 HSSP:O87916 EMBL:BC045877
IPI:IPI00503126 RefSeq:NP_956285.1 UniGene:Dr.5968
ProteinModelPortal:Q7ZVG0 GeneID:336007 KEGG:dre:336007
InParanoid:Q7ZVG0 NextBio:20811137 ArrayExpress:Q7ZVG0
Uniprot:Q7ZVG0
Length = 531
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/107 (27%), Positives = 44/107 (41%)
Query: 30 GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89
GT +S I +P G + G L +E G+L WG G S L +G
Sbjct: 55 GTGDSQSTI-APKKLDCLSGKKLISLSYGSGPHVLLVTEDGELYAWGH---NGYSQLGNG 110
Query: 90 KHGETPEPFPLPTEAS---VVKAAAGWAHCVSVTEAGEVYTWGWREC 133
+ P + T V + + G H +++T GEV+ WG+ C
Sbjct: 111 TTNQGVSPILVSTNLQGKRVTEVSCGSHHSLALTHEGEVFAWGYNNC 157
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +IA G HS +TD G L +G YGQ
Sbjct: 235 VLQIASGYAHSLALTDEGLLYAWGANTYGQ 264
Score = 60 (26.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYG 319
+ IACG S VTD G + +GWG G
Sbjct: 183 IVNIACGQTSSMAVTDNGEV--YGWGYNG 209
>UNIPROTKB|Q92834 [details] [associations]
symbol:RPGR "X-linked retinitis pigmentosa GTPase
regulator" species:9606 "Homo sapiens" [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0050896 "response to stimulus" evidence=IEA] [GO:0035085
"cilium axoneme" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007601 "visual perception" evidence=IMP] [GO:0001750
"photoreceptor outer segment" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0042384 "cilium assembly"
evidence=IMP] [GO:0042073 "intraflagellar transport" evidence=ISS]
[GO:0036064 "cilium basal body" evidence=ISS] [GO:0036126 "sperm
flagellum" evidence=ISS] [GO:0006886 "intracellular protein
transport" evidence=TAS] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005794 GO:GO:0005813 GO:GO:0006886 GO:GO:0007601
Orphanet:1872 Orphanet:791 GO:GO:0050896 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005085 GO:GO:0042384
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
EMBL:CH471141 GO:GO:0042073 GO:GO:0001750 eggNOG:COG5184
Orphanet:244 GO:GO:0036064 Orphanet:49382 GO:GO:0036126
EMBL:AL606748 CTD:6103 HOVERGEN:HBG026899 EMBL:U57629 EMBL:X97668
EMBL:AJ238395 EMBL:AJ318463 EMBL:BC031624 EMBL:AF286471
EMBL:BK005711 IPI:IPI00023757 IPI:IPI00215806 IPI:IPI00215807
IPI:IPI00215808 IPI:IPI00382445 IPI:IPI00397031 RefSeq:NP_000319.1
RefSeq:NP_001030025.1 UniGene:Hs.61438 ProteinModelPortal:Q92834
SMR:Q92834 STRING:Q92834 PhosphoSite:Q92834 DMDM:23503098
PaxDb:Q92834 PRIDE:Q92834 DNASU:6103 Ensembl:ENST00000309513
Ensembl:ENST00000318842 Ensembl:ENST00000338898
Ensembl:ENST00000339363 Ensembl:ENST00000342811
Ensembl:ENST00000378505 Ensembl:ENST00000474584
Ensembl:ENST00000482855 GeneID:6103 KEGG:hsa:6103 UCSC:uc004deb.3
GeneCards:GC0XM038128 HGNC:HGNC:10295 HPA:HPA001593 MIM:300029
MIM:300455 MIM:300834 MIM:304020 MIM:312610 neXtProt:NX_Q92834
Orphanet:247522 PharmGKB:PA34656 OMA:NNVLPHY PhylomeDB:Q92834
ChiTaRS:RPGR GenomeRNAi:6103 NextBio:23741 ArrayExpress:Q92834
Bgee:Q92834 CleanEx:HS_RPGR Genevestigator:Q92834
GermOnline:ENSG00000156313 Uniprot:Q92834
Length = 1020
Score = 79 (32.9 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G + A +E G+L WG + EGQ L + + P+ + S + + G+ H
Sbjct: 148 GSNTSAALTEDGRLFMWGD-NSEGQIGLKNVSNVCVPQQVTIGKPVSWI--SCGYYHSAF 204
Query: 119 VTEAGEVYTWG 129
VT GE+Y +G
Sbjct: 205 VTTDGELYVFG 215
Score = 78 (32.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ I+CG H+A++TD G + TFG G +G+
Sbjct: 297 ISYISCGENHTALITDIGLMYTFGDGRHGK 326
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSD 229
+P LV+ P K+ +VA GG HT++L++
Sbjct: 234 TPQLVSEIPE-KVIQVACGGEHTVVLTE 260
>UNIPROTKB|F1PB99 [details] [associations]
symbol:HERC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237 SMART:SM00119
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0016567 GO:GO:0005622
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 SUPFAM:SSF56204
GeneTree:ENSGT00660000095216 OMA:KDWITNT EMBL:AAEX03016753
EMBL:AAEX03016752 Ensembl:ENSCAFT00000015560 Uniprot:F1PB99
Length = 1025
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACGG H+A++T G + TFG G YGQ
Sbjct: 244 VEFLACGGSHTALLTKDGLVFTFGAGKYGQ 273
Score = 85 (35.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE----ASVVKAAA 111
CG AL+ + G+L WG + GQ L G+ T P P E +V+ +A
Sbjct: 142 CGDYHSLALSKGQGGELFAWGQ-NLHGQ--LGVGRLF-TSIPTPQLVEHLSGVPLVQISA 197
Query: 112 GWAHCVSVTEAGEVYTWG 129
G AH ++++ +G +Y+WG
Sbjct: 198 GKAHSMALSMSGNIYSWG 215
>ZFIN|ZDB-GENE-070912-423 [details] [associations]
symbol:rpgra "retinitis pigmentosa GTPase regulator
a" species:7955 "Danio rerio" [GO:0072001 "renal system
development" evidence=IMP] INTERPRO:IPR000408 Pfam:PF00415
ZFIN:ZDB-GENE-070912-423 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GO:GO:0072001 GeneTree:ENSGT00700000104160 EMBL:BX571713
IPI:IPI00955233 RefSeq:XP_003199276.1 Ensembl:ENSDART00000079095
GeneID:571327 KEGG:dre:571327 CTD:571327 NextBio:20890513
Bgee:F1QV77 Uniprot:F1QV77
Length = 1698
Score = 87 (35.7 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ GR V + CG +HSA++TD+G L TFG G +G+
Sbjct: 291 RKGR--VTHVTCGEQHSALITDSGLLYTFGDGRHGK 324
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G+L WG + GQ + H P+ L S+ + G+ H VT++G+
Sbjct: 153 ALTEDGRLFLWGD-NSAGQLGFGNDSHALLPKE--LNMGQSIHWVSCGYRHSALVTDSGD 209
Query: 125 VYTWG 129
VY++G
Sbjct: 210 VYSFG 214
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 214 ITKVAAGGRHTLILSD 229
+ +VA GG+HTL L++
Sbjct: 243 VLQVACGGKHTLALTE 258
>MGI|MGI:1914388 [details] [associations]
symbol:Herc6 "hect domain and RLD 6" species:10090 "Mus
musculus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO;IBA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=ISO;IBA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0030332 "cyclin binding" evidence=ISO] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0045087 "innate immune response"
evidence=IEA] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 MGI:MGI:1914388 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005829 GO:GO:0005634 GO:GO:0005737 GO:GO:0045087
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
GO:GO:0042787 SUPFAM:SSF56204 GeneTree:ENSGT00660000095216
CTD:55008 OMA:HIFAGTY EMBL:AC127307 EMBL:AC142212 EMBL:AK017888
EMBL:AK149648 IPI:IPI00850197 RefSeq:NP_080268.1 UniGene:Mm.297393
ProteinModelPortal:F2Z461 SMR:F2Z461 PRIDE:F2Z461
Ensembl:ENSMUST00000031817 GeneID:67138 KEGG:mmu:67138
ChiTaRS:HERC6 NextBio:323692 Bgee:F2Z461 Uniprot:F2Z461
Length = 1003
Score = 91 (37.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84
WG L + + PI A D D+ G ++A GK+ WG A EGQ
Sbjct: 51 WGQLGQRRDQSTERPEPIQAL---NDLHVDLVSCGKEHSVAVCHKGKVFAWG-AGSEGQL 106
Query: 85 YLTSGKH-GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ K P +++ + G H ++++E G V++WG
Sbjct: 107 GIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWG 152
Score = 69 (29.3 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T+ G + TFG GQ
Sbjct: 240 ISCGYEHTAVLTEEGQVFTFGGNSSGQ 266
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 211 GVKITKVAAGGRHTLILS 228
G+ + +VAAGG H+ LS
Sbjct: 179 GIPLAQVAAGGTHSFALS 196
>ZFIN|ZDB-GENE-040426-2213 [details] [associations]
symbol:rcc2 "regulator of chromosome condensation
2" species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0051301 "cell division" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415
ZFIN:ZDB-GENE-040426-2213 GO:GO:0005730 GO:GO:0051301 GO:GO:0007067
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GeneTree:ENSGT00700000104160 EMBL:BC066628
IPI:IPI00486648 RefSeq:NP_998341.1 UniGene:Dr.828
ProteinModelPortal:Q6NYE2 STRING:Q6NYE2 PRIDE:Q6NYE2
Ensembl:ENSDART00000010647 GeneID:406455 KEGG:dre:406455 CTD:55920
HOGENOM:HOG000232061 HOVERGEN:HBG080538 InParanoid:Q6NYE2
OMA:FGENKLG OrthoDB:EOG4DNF4B NextBio:20818048 ArrayExpress:Q6NYE2
Bgee:Q6NYE2 Uniprot:Q6NYE2
Length = 495
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 55 VCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW 113
V G C +L + GKL +WG +D+GQ K E P+ E +V AA G
Sbjct: 126 VVSGPCAAHSLIITTEGKLWSWGR-NDKGQLGHGDTKRLEAPKLIEGLGEEVIVAAACGR 184
Query: 114 AHCVSVTEAGEVYTWG 129
H +++TE G VYT+G
Sbjct: 185 NHTLALTENGTVYTFG 200
Score = 62 (26.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
G+ VK +ACG S +V G L +FG YGQ
Sbjct: 226 GQPIVK-VACGAEFSMIVDCKGNLYSFGCPEYGQ 258
Score = 60 (26.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 292 KEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++ACG H+ V+ + ++G+G YG+
Sbjct: 306 RDVACGANHTLVLDSQKRVFSWGFGGYGR 334
>UNIPROTKB|F1NUG6 [details] [associations]
symbol:Gga.50841 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005929
"cilium" evidence=IEA] [GO:0007601 "visual perception"
evidence=IEA] [GO:0042462 "eye photoreceptor cell development"
evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
GO:GO:0005929 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
GeneTree:ENSGT00700000104160 EMBL:AADN02011054 IPI:IPI00586770
Ensembl:ENSGALT00000026211 OMA:ENGLMFT Uniprot:F1NUG6
Length = 720
Score = 88 (36.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V ++ACGG H+ V+T+ G + TFG G YGQ
Sbjct: 247 VNKVACGGEHTVVLTETG-VYTFGLGQYGQ 275
Score = 87 (35.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 30/87 (34%), Positives = 40/87 (45%)
Query: 47 CGGDSWKDVCGGGCGF---ALATSESGKLITWGSADDEGQSYLTSG-KHGETPEPFPLPT 102
C D K V CG+ A T + G+L T+G ++ L K+ P+P L
Sbjct: 186 CQVDVGKPVSSISCGYYHSAFITGD-GELYTFGEPENGKLGLLPEQLKNSRVPQPV-LGI 243
Query: 103 EASVVKAAAGWAHCVSVTEAGEVYTWG 129
V K A G H V +TE G VYT+G
Sbjct: 244 MEKVNKVACGGEHTVVLTETG-VYTFG 269
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 53 KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG 112
K + G A A +E G+L WG + EGQ L P + S + + G
Sbjct: 145 KQLAAGSYTSA-AVTEDGQLFVWGD-NSEGQIGLADKTCVSVPCQVDVGKPVSSI--SCG 200
Query: 113 WAHCVSVTEAGEVYTWG 129
+ H +T GE+YT+G
Sbjct: 201 YYHSAFITGDGELYTFG 217
Score = 74 (31.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 274 LVRQGSVNSSGKAGRSY-VKEIACGGRHSAVVTDA--GALLTFGWGLYGQ 320
L+ + SV S K RS+ + + CG H+AV+ D G + TFG G +G+
Sbjct: 281 LLFKTSVPKSVKHLRSHKIHNVTCGESHTAVIADTENGLMFTFGDGRHGK 330
Score = 57 (25.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 213 KITKVAAGGRHTLILSD 229
K+ KVA GG HT++L++
Sbjct: 246 KVNKVACGGEHTVVLTE 262
>UNIPROTKB|Q9P258 [details] [associations]
symbol:RCC2 "Protein RCC2" species:9606 "Homo sapiens"
[GO:0005874 "microtubule" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005819
"spindle" evidence=IEA] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005829 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0000775 GO:GO:0005730 GO:GO:0051301 GO:GO:0005819
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005874
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GO:GO:0000236 CTD:55920 HOGENOM:HOG000232061
HOVERGEN:HBG080538 OMA:FGENKLG OrthoDB:EOG4DNF4B EMBL:AJ421269
EMBL:AB040903 EMBL:BC004933 EMBL:BC042141 EMBL:BC053908
EMBL:AL359612 IPI:IPI00465044 PIR:T50630 RefSeq:NP_001129676.1
RefSeq:NP_061185.1 UniGene:Hs.380857 ProteinModelPortal:Q9P258
SMR:Q9P258 IntAct:Q9P258 STRING:Q9P258 PhosphoSite:Q9P258
DMDM:71152033 SWISS-2DPAGE:Q9P258 PaxDb:Q9P258 PeptideAtlas:Q9P258
PRIDE:Q9P258 Ensembl:ENST00000375433 Ensembl:ENST00000375436
GeneID:55920 KEGG:hsa:55920 UCSC:uc001bal.3 GeneCards:GC01M017733
HGNC:HGNC:30297 MIM:609587 neXtProt:NX_Q9P258 PharmGKB:PA142671091
InParanoid:Q9P258 GenomeRNAi:55920 NextBio:61323 Bgee:Q9P258
CleanEx:HS_RCC2 Genevestigator:Q9P258 GermOnline:ENSG00000179051
Uniprot:Q9P258
Length = 522
Score = 92 (37.4 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 53 KDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
+ V G C +L + GKL +WG +++GQ K E P + +V AA
Sbjct: 151 RTVVSGSCAAHSLLITTEGKLWSWGR-NEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAAC 209
Query: 112 GWAHCVSVTEAGEVYTWG 129
G H +++TE G V+ +G
Sbjct: 210 GRNHTLALTETGSVFAFG 227
Score = 64 (27.6 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+++ACG H+ V+ + ++G+G YG+
Sbjct: 332 VRDVACGANHTLVLDSQKRVFSWGFGGYGR 361
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLIL 227
SP + N G ITK+A G ++I+
Sbjct: 245 SPAQIMYN-GQPITKMACGAEFSMIM 269
>UNIPROTKB|Q9UGK8 [details] [associations]
symbol:SERGEF "Secretion-regulating guanine nucleotide
exchange factor" species:9606 "Homo sapiens" [GO:0005087 "Ran
guanyl-nucleotide exchange factor activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0050709 "negative
regulation of protein secretion" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IDA] InterPro:IPR027048 INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005737 GO:GO:0007165 GO:GO:0005730
GO:GO:0045111 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0005087 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0050709 eggNOG:COG5184 CTD:26297
HOGENOM:HOG000154414 HOVERGEN:HBG051746 KO:K15421 OMA:NIWAPKP
OrthoDB:EOG4J1183 PANTHER:PTHR22870:SF7 EMBL:AJ243950 EMBL:AJ243951
EMBL:BC065375 IPI:IPI00015919 IPI:IPI00383576 RefSeq:NP_036271.1
UniGene:Hs.32470 ProteinModelPortal:Q9UGK8 SMR:Q9UGK8 IntAct:Q9UGK8
STRING:Q9UGK8 PhosphoSite:Q9UGK8 DMDM:38257790 PaxDb:Q9UGK8
PeptideAtlas:Q9UGK8 PRIDE:Q9UGK8 Ensembl:ENST00000265965
Ensembl:ENST00000528200 GeneID:26297 KEGG:hsa:26297 UCSC:uc001mnm.3
UCSC:uc001mnn.3 GeneCards:GC11M017767 HGNC:HGNC:17499 HPA:HPA037811
MIM:606051 neXtProt:NX_Q9UGK8 PharmGKB:PA143485610
InParanoid:Q9UGK8 PhylomeDB:Q9UGK8 GenomeRNAi:26297 NextBio:48643
ArrayExpress:Q9UGK8 Bgee:Q9UGK8 CleanEx:HS_SERGEF
Genevestigator:Q9UGK8 GermOnline:ENSG00000129158 Uniprot:Q9UGK8
Length = 458
Score = 99 (39.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 43 PARLCGGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP 101
P+R+ G ++ K +C G + + +++G++ WGS + GQ + + P P +
Sbjct: 203 PSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGS-NKHGQ---LANEAAFLPVPQKIE 258
Query: 102 TEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
V +GW H V+ TE G+++TWG
Sbjct: 259 AHCFQNEKVTAIWSGWTHLVAQTETGKMFTWG 290
Score = 61 (26.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSW 336
E++CG H+ + G ++GW +G C GDG W
Sbjct: 337 EVSCGSEHNLAII-GGVCYSWGWNEHGM----C--GDGTEANVW 373
>TAIR|locus:2079147 [details] [associations]
symbol:AT3G47660 "AT3G47660" species:3702 "Arabidopsis
thaliana" [GO:0003682 "chromatin binding" evidence=ISS] [GO:0008536
"Ran GTPase binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000306 Pfam:PF01363 SMART:SM00064
INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002686 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0046872 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 Gene3D:3.30.40.10
InterPro:IPR017455 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 PROSITE:PS50178 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 IPI:IPI00548806 RefSeq:NP_190350.4 UniGene:At.48747
UniGene:At.66547 ProteinModelPortal:F4JCN3 SMR:F4JCN3 PRIDE:F4JCN3
EnsemblPlants:AT3G47660.1 GeneID:823920 KEGG:ath:AT3G47660
OMA:CLSHEIS ArrayExpress:F4JCN3 Uniprot:F4JCN3
Length = 954
Score = 86 (35.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 290 YVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
YVK I+CG H+A VT G L TFG G +G
Sbjct: 407 YVKAISCGPWHTAFVTSEGKLFTFGDGTFG 436
Score = 83 (34.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 274 LVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+VR S G G+S+V+E+ACG H AV+ + T+G G GQ
Sbjct: 550 IVRAPSCIEGG-LGKSFVQEVACGFHHIAVLNSKAEVYTWGKGSNGQ 595
Score = 82 (33.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAA-AGWAHC 116
G +A+ ++ G++ +WG +E L G P P + S V+ A G H
Sbjct: 307 GTNYAVLVTKQGQMYSWG---EESGGRLGHGVCSYVPHPKLIDEFNGSTVELADCGEFHT 363
Query: 117 VSVTEAGEVYTWG 129
+VT +G++Y WG
Sbjct: 364 CAVTASGDLYAWG 376
>ZFIN|ZDB-GENE-040426-2216 [details] [associations]
symbol:rcc1 "regulator of chromosome condensation
1" species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
INTERPRO:IPR000408 Pfam:PF00415 ZFIN:ZDB-GENE-040426-2216
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 GeneTree:ENSGT00700000104160 KO:K11493 CTD:1104
HOGENOM:HOG000234341 HOVERGEN:HBG017712 OrthoDB:EOG4320Z9
HSSP:P18754 OMA:GTESCFV EMBL:CR855299 EMBL:BC059796 EMBL:BC066721
IPI:IPI00511389 RefSeq:NP_998343.1 UniGene:Dr.77012 SMR:Q6NY65
STRING:Q6NY65 Ensembl:ENSDART00000054026 GeneID:406457
KEGG:dre:406457 InParanoid:Q6NY65 NextBio:20818049 Uniprot:Q6NY65
Length = 418
Score = 102 (41.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 38/118 (32%), Positives = 52/118 (44%)
Query: 31 TSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS-ADDEGQSYLTSG 89
TS E S +PA++ G+ V G A A +E G + WGS D+ G L
Sbjct: 103 TSEEGS---ETVPAKVDLGEKIIQVSAGDSHSA-ALTEDGGVYVWGSFRDNNGVIGLLEP 158
Query: 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147
T P +P + VVK +G H V +T GE+YT G E +V F + G
Sbjct: 159 MKKCTV-PVKVPIDKPVVKIVSGNDHLVMLTAHGELYTSGCGEQGQLGRVAEHFANRG 215
Score = 56 (24.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 287 GRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
G S V+ +ACG S VT G++ F WG+
Sbjct: 340 GISDVQVVACGASVSYAVTKQGSV--FSWGM 368
>UNIPROTKB|E1C4H7 [details] [associations]
symbol:HERC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] Pfam:PF00632 InterPro:IPR017986
InterPro:IPR000569 InterPro:IPR001680 InterPro:IPR003877
InterPro:IPR015880 InterPro:IPR015943 Pfam:PF00400 Pfam:PF00622
PROSITE:PS50082 PROSITE:PS50237 PROSITE:PS50294 SMART:SM00119
SMART:SM00320 SMART:SM00355 INTERPRO:IPR000408 Pfam:PF00415
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0008270 GO:GO:0016567 GO:GO:0005622
InterPro:IPR008985 SUPFAM:SSF49899 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 SUPFAM:SSF56204
OMA:HHYQDGI GeneTree:ENSGT00700000104312 EMBL:AADN02040444
EMBL:AADN02040445 EMBL:AADN02040446 IPI:IPI00593079
Ensembl:ENSGALT00000005344 Uniprot:E1C4H7
Length = 4863
Score = 106 (42.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA-AAGWAHC 116
G G LA + G++ +WG D + S + P+ P + VV +AG+ H
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQ-KYPKLIQGPLQGKVVVCVSAGYRHS 523
Query: 117 VSVTEAGEVYTWG 129
+VTE GE+YTWG
Sbjct: 524 AAVTEDGELYTWG 536
Score = 83 (34.3 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4136 VVQMSCGFKHSAVVTADGKLFTFGNGDYGR 4165
Score = 38 (18.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 211 GVKITKVAAGGRHTL 225
GV I +++AG H+L
Sbjct: 717 GVSIQQISAGTSHSL 731
Score = 38 (18.4 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 170 KRAGEEVVKRRKTSS-----AREESEN 191
K AG+++ K R S REE EN
Sbjct: 2249 KEAGQKLKKSRSIQSREENEVREEKEN 2275
Score = 37 (18.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
E L P L+ +I ++ G H L LS
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALS 681
>MGI|MGI:1351630 [details] [associations]
symbol:Sergef "secretion regulating guanine nucleotide
exchange factor" species:10090 "Mus musculus" [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0005087 "Ran guanyl-nucleotide exchange factor activity"
evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0050709 "negative regulation of
protein secretion" evidence=ISO] [GO:0050790 "regulation of
catalytic activity" evidence=ISA] InterPro:IPR027048
MGI:MGI:1351630 INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005634
GO:GO:0005737 GO:GO:0005730 GO:GO:0045111 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0005087 PRINTS:PR00633
PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0050709
eggNOG:COG5184 GeneTree:ENSGT00700000104160 CTD:26297
HOGENOM:HOG000154414 HOVERGEN:HBG051746 KO:K15421 OMA:NIWAPKP
OrthoDB:EOG4J1183 PANTHER:PTHR22870:SF7 EMBL:AJ243952 EMBL:AK145819
EMBL:AK147848 EMBL:BC049603 EMBL:BC119533 EMBL:BC119534
IPI:IPI00134816 RefSeq:NP_038817.1 UniGene:Mm.76659
ProteinModelPortal:Q80YD6 SMR:Q80YD6 STRING:Q80YD6 PRIDE:Q80YD6
Ensembl:ENSMUST00000033127 GeneID:27414 KEGG:mmu:27414
UCSC:uc009gyp.2 InParanoid:Q80YD6 NextBio:305446 Bgee:Q80YD6
Genevestigator:Q80YD6 GermOnline:ENSMUSG00000030839 Uniprot:Q80YD6
Length = 464
Score = 99 (39.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 43 PARLCGGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP 101
P+R+ G ++ VC G + + +++G+L WG + GQ L S + P P +
Sbjct: 203 PSRVTGLENSTAVCAVAGSDHSASLTDTGELYVWGR-NKHGQ--LAS-RAVFLPLPQRIE 258
Query: 102 T----EASVVKAAAGWAHCVSVTEAGEVYTWG 129
+ V +GW H V+ TE G+V+TWG
Sbjct: 259 AHYFQDEKVTAVWSGWTHLVAKTETGKVFTWG 290
Score = 60 (26.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 293 EIACGGRHS-AVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP 341
EI+CG H+ AV+ D ++GW +G C GDG W TP
Sbjct: 337 EISCGSEHNLAVIRDK--CCSWGWNEHGM----C--GDGTESNVWT-PTP 377
>UNIPROTKB|C9J3R0 [details] [associations]
symbol:RCC1 "Regulator of chromosome condensation"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] INTERPRO:IPR000408
Pfam:PF00415 GO:GO:0005634 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626
PROSITE:PS50012 EMBL:AL513497 HGNC:HGNC:1913 HOGENOM:HOG000234341
IPI:IPI00926548 ProteinModelPortal:C9J3R0 SMR:C9J3R0 STRING:C9J3R0
PRIDE:C9J3R0 Ensembl:ENST00000434290 ArrayExpress:C9J3R0
Bgee:C9J3R0 Uniprot:C9J3R0
Length = 273
Score = 97 (39.2 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ GG + S+SG++ ++G +DEG + G
Sbjct: 66 KKPALVSIPEDVVQAEA------GGM-HTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 117
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG-WRECV 134
P + + VV+ +AG +H ++T+ G V+ WG +R C+
Sbjct: 118 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRHCL 158
Score = 55 (24.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ--RMAKCLAGDGINMG 334
V ++A G H ++T G L T G G GQ R+ + A G G
Sbjct: 210 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 255
>ZFIN|ZDB-GENE-081015-2 [details] [associations]
symbol:rpgrb "retinitis pigmentosa GTPase regulator
b" species:7955 "Danio rerio" [GO:0060287 "epithelial cilium
movement involved in determination of left/right asymmetry"
evidence=IMP] [GO:0060271 "cilium morphogenesis" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0007018
"microtubule-based movement" evidence=IMP] INTERPRO:IPR000408
Pfam:PF00415 ZFIN:ZDB-GENE-081015-2 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0010842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0060271 GO:GO:0060287
GeneTree:ENSGT00700000104160 EMBL:CR450831 IPI:IPI00798788
RefSeq:XP_685964.5 UniGene:Dr.100975 Ensembl:ENSDART00000088624
GeneID:557752 KEGG:dre:557752 CTD:557752 NextBio:20882140
Bgee:F1QM29 Uniprot:F1QM29
Length = 1413
Score = 86 (35.3 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ GR VK ACG H+A++TD G L TFG G +G+
Sbjct: 294 RKGR--VKHAACGENHTALITDNGLLYTFGDGRHGK 327
Score = 81 (33.6 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G + A ++ G+L WG + EGQ L GK P + V + G+ H
Sbjct: 149 GSNTSAALTQDGRLYMWGD-NSEGQIGL--GKESNALTPQEVSVGKRVFWVSCGYYHSAF 205
Query: 119 VTEAGEVYTWGWRE 132
VT G +YT+G ++
Sbjct: 206 VTVDGALYTFGEKD 219
Score = 45 (20.9 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSD 229
P VT P ++ +VA GG HT+ L++
Sbjct: 236 PQQVTDIPD-RVVQVACGGGHTVALTE 261
>UNIPROTKB|I3LT85 [details] [associations]
symbol:RCC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051225 "spindle assembly" evidence=IEA] [GO:0042393
"histone binding" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0031492 "nucleosomal DNA binding" evidence=IEA]
[GO:0007090 "regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0007088 "regulation of mitosis" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0007052
"mitotic spindle organization" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005087 "Ran guanyl-nucleotide
exchange factor activity" evidence=IEA] [GO:0000794 "condensed
nuclear chromosome" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=IEA] INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005737
GO:GO:0007088 GO:GO:0007059 GO:GO:0007052 GO:GO:0051225
GO:GO:0000082 GO:GO:0031965 GO:GO:0000790 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0000794 GO:GO:0005087
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
GO:GO:0007090 GO:GO:0031492 GeneTree:ENSGT00700000104160 KO:K11493
CTD:1104 OMA:GTESCFV EMBL:FP565629 RefSeq:XP_003482053.1
Ensembl:ENSSSCT00000028011 GeneID:100621543 KEGG:ssc:100621543
Uniprot:I3LT85
Length = 421
Score = 102 (41.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L PIP + ++ GG + S+SG++ ++G +DEG + G
Sbjct: 58 KKPALVPIPEDIVQAEA------GGM-HTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 109
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + + VV+ +AG +H ++TE G V+ WG
Sbjct: 110 MVPGKVELQEKVVQVSAGDSHTAALTEDGRVFLWG 144
Score = 55 (24.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ--RMAKCLAGDGINMG 334
V ++A G H ++T G L T G G GQ R+ + A G G
Sbjct: 174 VVKVASGNDHLVMLTADGELYTLGSGEQGQLGRVPELFANRGGRQG 219
>DICTYBASE|DDB_G0284187 [details] [associations]
symbol:Dd5P2 "inositol 5-phosphatase" species:44689
"Dictyostelium discoideum" [GO:0046856 "phosphatidylinositol
dephosphorylation" evidence=IDA] [GO:0046855 "inositol phosphate
dephosphorylation" evidence=IDA] [GO:0034485
"phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity"
evidence=IDA] [GO:0004445 "inositol-polyphosphate 5-phosphatase
activity" evidence=IDA] [GO:0004439
"phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity"
evidence=IDA] [GO:0046854 "phosphatidylinositol phosphorylation"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000300 SMART:SM00128 dictyBase:DDB_G0284187
INTERPRO:IPR000408 Pfam:PF00415 GenomeReviews:CM000153_GR
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:AAFI02000064 GO:GO:0046854 GO:GO:0046855
GO:GO:0004439 GO:GO:0046856 GO:GO:0004445 eggNOG:COG5411
GO:GO:0034485 RefSeq:XP_638694.1 ProteinModelPortal:Q54PV1
EnsemblProtists:DDB0191414 GeneID:8624525 KEGG:ddi:DDB_G0284187
InParanoid:Q54PV1 OMA:SHEKMER Uniprot:Q54PV1
Length = 1800
Score = 87 (35.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 52 WKD-VCGGGCGF---ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVV 107
WK V CGF L TSE K+ + G + GQ + + P P ++ +V+
Sbjct: 72 WKRRVVSVSCGFNHTLLLTSEY-KIFSMGF-NQTGQLGIENVVDSAVPLPVDTLSKFNVI 129
Query: 108 KAAAGWAHCVSVTEAGEVYTWG 129
K AG ++TEAG++Y WG
Sbjct: 130 KIKAGNNVSAAITEAGDLYCWG 151
Score = 85 (35.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 30/111 (27%), Positives = 45/111 (40%)
Query: 212 VKITKVAAGGRHTLILSDMXXXXX-XXXXXXXXXXXXSRIKMVPTP-HLIPCLEHAASGK 269
++ T + G +HT+ +S K+VP P HL E A
Sbjct: 193 LQYTNICFGAQHTIAISTTGAIFSWGSNQYGQLGLGHCNAKLVPVPIHLDNSFERRAGHI 252
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ L + + + K V +IACG HSA++T G L +G YGQ
Sbjct: 253 NS--LGEIVTTDFTAKTIHRIVVDIACGNFHSALLTLEGDLFLWGSNQYGQ 301
>UNIPROTKB|F1NXI5 [details] [associations]
symbol:SERGEF "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0050709 "negative regulation of
protein secretion" evidence=IEA] InterPro:IPR027048
INTERPRO:IPR000408 Pfam:PF00415 GO:GO:0005730 GO:GO:0045111
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 GO:GO:0050709
GeneTree:ENSGT00700000104160 PANTHER:PTHR22870:SF7
EMBL:AADN02030419 EMBL:AADN02030421 EMBL:AADN02030420
IPI:IPI00682810 Ensembl:ENSGALT00000010072 OMA:PIELDIT
Uniprot:F1NXI5
Length = 382
Score = 97 (39.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA-SVVKAAA---GWAHCVS 118
+L+T+ G L WGS + GQ L S K EP + T+ S K A GW H V+
Sbjct: 206 SLSTAGEGHLYVWGS-NKHGQ--LVS-KEVFLVEPKKIDTQFFSHEKIGAVWSGWTHLVA 261
Query: 119 VTEAGEVYTWG 129
TE G+V+TWG
Sbjct: 262 QTETGKVFTWG 272
Score = 58 (25.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 293 EIACGGRHS-AVVTDAGALLTFGWGLYGQRMAKCLAGDG 330
+IACG H+ AVV D L++GW +G C GDG
Sbjct: 318 QIACGSEHNLAVVGDC--CLSWGWNEHGM----C--GDG 348
>UNIPROTKB|C9JRH2 [details] [associations]
symbol:RCC1 "Regulator of chromosome condensation"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0031965 "nuclear
membrane" evidence=IDA] INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0031965 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00625 PROSITE:PS00626 PROSITE:PS50012
EMBL:AL513497 HGNC:HGNC:1913 HOGENOM:HOG000234341 OrthoDB:EOG4320Z9
IPI:IPI00927389 ProteinModelPortal:C9JRH2 SMR:C9JRH2 STRING:C9JRH2
Ensembl:ENST00000427469 ArrayExpress:C9JRH2 Bgee:C9JRH2
Uniprot:C9JRH2
Length = 230
Score = 82 (33.9 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
++E G ++T G D GQ L G++ E +P + VV+A AG H V ++++G+
Sbjct: 31 STEPGLVLTLGQGD-VGQ--LGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQ 87
Query: 125 VYTWGWRECVPSAKVTRDFGSAGS 148
VY++G C + RD GS
Sbjct: 88 VYSFG---CNDEGALGRDTSVEGS 108
Score = 55 (24.4 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ--RMAKCLAGDGINMG 334
V ++A G H ++T G L T G G GQ R+ + A G G
Sbjct: 174 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 219
Score = 44 (20.5 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 213 KITKVAAGGRHTLILSD 229
K+ +V+AG HT L+D
Sbjct: 120 KVVQVSAGDSHTAALTD 136
>RGD|1561739 [details] [associations]
symbol:Herc6 "HECT and RLD domain containing E3 ubiquitin
protein ligase family member 6" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] Pfam:PF00632 InterPro:IPR000569 PROSITE:PS50237
SMART:SM00119 RGD:1561739 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005634 GO:GO:0005737 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 PRINTS:PR00633 PROSITE:PS00626
PROSITE:PS50012 GO:GO:0042787 SUPFAM:SSF56204 eggNOG:COG5021
HOGENOM:HOG000208452 HOVERGEN:HBG050878 OrthoDB:EOG4N30N6
IPI:IPI00553869 EMBL:BC085921 UniGene:Rn.107120
ProteinModelPortal:Q5U2P8 PhosphoSite:Q5U2P8 UCSC:RGD:1561739
InParanoid:Q5U2P8 ArrayExpress:Q5U2P8 Genevestigator:Q5U2P8
Uniprot:Q5U2P8
Length = 1034
Score = 91 (37.1 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 30/110 (27%), Positives = 53/110 (48%)
Query: 26 GYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85
G L SP+ + PI A D+ G ++A G++ TWG A EGQ
Sbjct: 58 GQLGQKSPQSTKRPEPIQAL---STVHIDLVSCGKEHSVAVCHQGRVFTWG-AGSEGQLG 113
Query: 86 LTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTEAGEVYTWG 129
+ GE+ E +PT+ + +++ + G H ++++E G+V++WG
Sbjct: 114 I-----GESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFSWG 158
Score = 60 (26.2 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 294 IACGGRHSAVVTDAGALLTFG 314
I+CG H++V+T+ G + TFG
Sbjct: 246 ISCGYEHTSVLTEDGQVFTFG 266
Score = 54 (24.1 bits), Expect = 0.00071, Sum P(3) = 0.00071
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDM 230
SP V G+ + +VAAGG H+ LS M
Sbjct: 176 SPQKVKSLEGIPLAQVAAGGTHSFALSLM 204
>TAIR|locus:2035423 [details] [associations]
symbol:AT1G19880 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008536 "Ran GTPase binding"
evidence=ISS] INTERPRO:IPR000408 Pfam:PF00415 EMBL:CP002684
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012 OMA:FGENKLG
IPI:IPI00543359 RefSeq:NP_173417.2 UniGene:At.16200
ProteinModelPortal:F4HQZ1 SMR:F4HQZ1 PRIDE:F4HQZ1
EnsemblPlants:AT1G19880.1 GeneID:838576 KEGG:ath:AT1G19880
Uniprot:F4HQZ1
Length = 538
Score = 87 (35.7 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 38 ILSPIPARLCGGDSWKDVCGGGCGF-ALATSESGKLITWGSADDEGQSYLTSGKHGETPE 96
++SP R G + + V G F +A G+ TWG +++GQ L G +
Sbjct: 44 LVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRCYTWGR-NEKGQ--LGHGDMIQRDR 100
Query: 97 PFPLP--TEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132
P + ++ +VKAAAG H V V++ G+ +GW +
Sbjct: 101 PTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNK 138
Score = 72 (30.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 286 AGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
AG + VK +ACG H+ V G + T+G+G YG+
Sbjct: 233 AGETIVK-VACGTNHTVAVDKNGYVYTWGFGGYGR 266
>ZFIN|ZDB-GENE-061220-11 [details] [associations]
symbol:sergef "secretion regulating guanine
nucleotide exchange factor" species:7955 "Danio rerio" [GO:0050709
"negative regulation of protein secretion" evidence=IEA]
InterPro:IPR027048 INTERPRO:IPR000408 Pfam:PF00415
ZFIN:ZDB-GENE-061220-11 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 PRINTS:PR00633 PROSITE:PS00626 PROSITE:PS50012
eggNOG:COG5184 HOGENOM:HOG000154414 HOVERGEN:HBG051746
OrthoDB:EOG4J1183 PANTHER:PTHR22870:SF7 EMBL:BC124691
IPI:IPI00490832 UniGene:Dr.91496 InParanoid:Q08BJ6 Uniprot:Q08BJ6
Length = 423
Score = 99 (39.9 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 39/124 (31%), Positives = 54/124 (43%)
Query: 22 VYMWGYLPGTSPEKSPILSP--IPARLCGGD----------SWKDVCGGGCGFALATSES 69
VY WG G S +L+P +P+ L + + + V G A T +
Sbjct: 196 VYQWG--TGLSSHAKRMLNPQPVPSHLSSKEPCLVPGFAHVTTQKVIAGSAHCACLTV-N 252
Query: 70 GKLITWGSADDEGQSYLTSGKHGETPEPFPLPT----EASVVKAAAGWAHCVSVTEAGEV 125
G+L WGS + GQ L SG P P L + V +GW H V+ TE+G V
Sbjct: 253 GELFLWGS-NKHGQ--LISGSLF-LPLPVALDRSMLQDERVSDVHSGWTHLVAQTESGRV 308
Query: 126 YTWG 129
+TWG
Sbjct: 309 FTWG 312
Score = 56 (24.8 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDG 330
+I+CG H+ V G + ++GW +G C GDG
Sbjct: 350 QISCGSEHNLAVV-GGRVFSWGWNEHGM----C--GDG 380
>MGI|MGI:1919784 [details] [associations]
symbol:Rcc2 "regulator of chromosome condensation 2"
species:10090 "Mus musculus" [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0051301 "cell division"
evidence=IEA] MGI:MGI:1919784 INTERPRO:IPR000408 Pfam:PF00415
GO:GO:0005737 GO:GO:0000775 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0005819 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0005874 PRINTS:PR00633 PROSITE:PS00625
PROSITE:PS00626 PROSITE:PS50012 EMBL:AL954710 eggNOG:COG5184
GeneTree:ENSGT00700000104160 CTD:55920 HOGENOM:HOG000232061
HOVERGEN:HBG080538 OMA:FGENKLG OrthoDB:EOG4DNF4B EMBL:AK076040
EMBL:BC086666 EMBL:AK129370 IPI:IPI00222509 RefSeq:NP_776292.1
UniGene:Mm.253 ProteinModelPortal:Q8BK67 SMR:Q8BK67 STRING:Q8BK67
PhosphoSite:Q8BK67 PaxDb:Q8BK67 PRIDE:Q8BK67
Ensembl:ENSMUST00000038893 Ensembl:ENSMUST00000071169 GeneID:108911
KEGG:mmu:108911 UCSC:uc008vna.2 InParanoid:A2AWQ3 ChiTaRS:RCC2
NextBio:361459 Bgee:Q8BK67 CleanEx:MM_RCC2 Genevestigator:Q8BK67
GermOnline:ENSMUSG00000040945 Uniprot:Q8BK67
Length = 520
Score = 93 (37.8 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 53 KDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
+ V G C +L + GKL +WG +++GQ K E P + ++V AA
Sbjct: 149 RTVVSGSCAAHSLLITTEGKLWSWGR-NEKGQLGHGDTKRVEAPRLIEALSHEAIVLAAC 207
Query: 112 GWAHCVSVTEAGEVYTWG 129
G H +++T+ G V+ +G
Sbjct: 208 GRNHTLALTDTGSVFAFG 225
Score = 64 (27.6 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+++ACG H+ V+ + ++G+G YG+
Sbjct: 330 VRDVACGANHTLVLDSQKRVFSWGFGGYGR 359
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 341 311 0.00080 116 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 613 (65 KB)
Total size of DFA: 229 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.12u 0.09s 28.21t Elapsed: 00:00:01
Total cpu time: 28.13u 0.09s 28.22t Elapsed: 00:00:01
Start: Sat May 11 16:11:14 2013 End: Sat May 11 16:11:15 2013