BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019441
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1
SV=1
Length = 440
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 120/281 (42%), Gaps = 59/281 (20%)
Query: 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
+ G ++A + +WG +D GQ HG+ E P PT+ S +V
Sbjct: 19 IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVS 71
Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE---- 163
G H V+ +++G EVY+WGW DFG G +S+ + LP +
Sbjct: 72 VTCGADHTVAYSQSGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHG 119
Query: 164 ----QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219
Q D ++ S R ++ GD +L P + G++I VAA
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 179
Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGS 279
G HT +++ G ++GWG+G G LGLG R T L+P
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-----TDRLVP-----------------ER 217
Query: 280 VNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V S+G S V ACG RH+ V+ +GAL T+GW YGQ
Sbjct: 218 VTSTGGEKMSMV---ACGWRHTISVSYSGALYTYGWSKYGQ 255
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 121/306 (39%), Gaps = 80/306 (26%)
Query: 41 PIPARLCGGDSWKDV---CGGGCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPE 96
P P +L D + V CG +A S+SG ++ +WG D HG + +
Sbjct: 56 PSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSD 107
Query: 97 PF-PLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQK 151
F PLP +A + + A G +HC++VT GEV +WG +
Sbjct: 108 LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWG---------------------R 146
Query: 152 DSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESE-----------------NPAS 194
+ G+ TE + K E ++ + ++ E + N
Sbjct: 147 NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGL 206
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254
GD L P VT G K++ VA G RHT+ +S G ++ +G+ GQLG G
Sbjct: 207 GDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDL----- 261
Query: 255 TPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFG 314
HLIP A S S++ +I+ G RH+ +T G L +G
Sbjct: 262 EDHLIPHKLEALS--------------------NSFISQISGGWRHTMALTSDGKLYGWG 301
Query: 315 WGLYGQ 320
W +GQ
Sbjct: 302 WNKFGQ 307
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 26/214 (12%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G A +E G L WG G L PE + A GW H +S
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 238
Query: 119 VTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVK 178
V+ +G +YT+GW + +G G + +P + S+ +
Sbjct: 239 VSYSGALYTYGWSK----------YGQLGHGDLE----DHLIPHKLEALSNSFISQISGG 284
Query: 179 RRKTSSAREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228
R T + + + G+ SP V K+ +V+ G RHTL ++
Sbjct: 285 WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 344
Query: 229 DMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL 262
+ V+ WG G GQLG+G + P +I L
Sbjct: 345 ERNNVFAWGRGTNGQLGIGESVDR-NFPKIIEAL 377
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 42 IPARL-CGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPL 100
IP +L +S+ GG +A + GKL WG + GQ + + +P
Sbjct: 266 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRF 324
Query: 101 PTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + VV+ + GW H ++VTE V+ WG
Sbjct: 325 PDDQKVVQVSCGWRHTLAVTERNNVFAWG 353
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 26/112 (23%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGK 269
P K+ ++AG H++ L V WG G +GQLG G +
Sbjct: 13 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-------------------DAE 53
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGA-LLTFGWGLYGQ 320
DRP + +++ + + CG H+ + +G + ++GWG +G+
Sbjct: 54 DRPSPTQLSALDG------HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGR 99
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3
PE=1 SV=1
Length = 1050
Score = 72.0 bits (175), Expect = 5e-12, Method: Composition-based stats.
Identities = 85/322 (26%), Positives = 127/322 (39%), Gaps = 78/322 (24%)
Query: 25 WGYLPGTSPEKSPILSPIPA--RLCGGDSWKDV----CGGGCGFALATSESGKLITWGSA 78
WGY P S L I A ++CG S + V CGG L E G++ T G
Sbjct: 4 WGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLL--EDGEVYTCG-L 60
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
+ +GQ L + G PE + ++ A G +H +++++ G++++WG
Sbjct: 61 NTKGQ--LGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWG--------- 109
Query: 139 VTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEF 198
GS G +T A+P ++ ++ + + S A+ +F
Sbjct: 110 ----AGSDGQLGLMTTEDSVAVPR-----LIQKLNQQTI--LQVSCGNWHCLALAADGQF 158
Query: 199 FT------------------LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGG 240
FT SP V G+ + +VAAGG H+ LS G V+GWG
Sbjct: 159 FTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNN 218
Query: 241 EGQLGLGSRIKMVPTPHLIPCLEHAASGKDR--PLLVRQGSVNSSGKAGRSYVKEIACGG 298
GQLGL KDR P V+ V I+CG
Sbjct: 219 AGQLGLSDE-------------------KDRESPCHVKLLRTQK--------VVYISCGE 251
Query: 299 RHSAVVTDAGALLTFGWGLYGQ 320
H+AV+T +G + TFG G GQ
Sbjct: 252 EHTAVLTKSGGVFTFGAGSCGQ 273
Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 57/253 (22%)
Query: 59 GCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
CG +LA S+ G+L +WG+ D +T+ P + ++++ + G HC
Sbjct: 90 ACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHC 149
Query: 117 VSVTEAGEVYTWGWR-----------------------ECVPSAKVTRDFGSAGSFQKDS 153
+++ G+ +TWG E +P A+V G A SF
Sbjct: 150 LALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAA--GGAHSFALSL 207
Query: 154 TGKQSALPTEQAPP---SDKRAGE-----EVVKRRKTSSAREESENPA----SGDEF-FT 200
+G A SD++ E ++++ +K E+ A SG F F
Sbjct: 208 SGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFG 267
Query: 201 LSPCLV--------TLNP-------GVKITKVAAGGRHTL-ILSDMGQVWGWGYGGEGQL 244
C +NP G ++T++A G +HTL + G ++ +G G GQL
Sbjct: 268 AGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQL 327
Query: 245 GLGSRIKM-VPTP 256
G G + P+P
Sbjct: 328 GTGHTCNVKCPSP 340
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4
PE=1 SV=1
Length = 1057
Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats.
Identities = 78/306 (25%), Positives = 124/306 (40%), Gaps = 63/306 (20%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
GCG + + G + T G +D GQ L K + PE ++V + G AH
Sbjct: 40 GCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVSCGEAHT 96
Query: 117 VSVTEAGEVYTWGW-----------RECVPSAKVTRDFGSAGSFQ--KDSTGKQSALPTE 163
+++ + G+VY WG EC+ +V R+ S Q + + G +L
Sbjct: 97 LALNDKGQVYAWGLDSDGQLGLVGSEECI---RVPRNIKSLSDIQIVQVACGYYHSLALS 153
Query: 164 QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRH 223
+A + + + ++++ SP L+ G+ +VAAGG H
Sbjct: 154 KASEVFCWGQNKYGQLGLGTDCKKQT------------SPQLLKSLLGIPFMQVAAGGAH 201
Query: 224 TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE-----HAASGKDR-PLLVRQ 277
+ +L+ G ++GWG GQLGL P+L+ L + G+D L ++
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDHTAALTKE 260
Query: 278 GSVNSSGKAGR----------------------SYVKEIACGGRH-SAVVTDAGALLTFG 314
G V + G G S V EIACG +H SA V +G + +FG
Sbjct: 261 GGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFG 320
Query: 315 WGLYGQ 320
G GQ
Sbjct: 321 LGGNGQ 326
Score = 38.9 bits (89), Expect = 0.051, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 29/204 (14%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYL-TSGKHGETPEPFPLPTEASVVKAAAGWAH 115
CG+ +LA S++ ++ WG + GQ L T K +P+ ++ AAG AH
Sbjct: 143 ACGYYHSLALSKASEVFCWGQ-NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAH 201
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP-------S 168
+T +G ++ WG FG G ++ + L + ++
Sbjct: 202 SFVLTLSGAIFGWG----------RNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGE 251
Query: 169 DKRAG---EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT- 224
D A E V + N S + ++P V G +T++A G +HT
Sbjct: 252 DHTAALTKEGGVFTFGAGGYGQLGHNSTSHE----INPRKVFELMGSIVTEIACGRQHTS 307
Query: 225 LILSDMGQVWGWGYGGEGQLGLGS 248
+ G+++ +G GG GQLG GS
Sbjct: 308 AFVPSSGRIYSFGLGGNGQLGTGS 331
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4
PE=2 SV=2
Length = 1057
Score = 65.9 bits (159), Expect = 5e-10, Method: Composition-based stats.
Identities = 77/306 (25%), Positives = 123/306 (40%), Gaps = 63/306 (20%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
GCG + + G + T G +D GQ L K + PE ++V A G AH
Sbjct: 40 GCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVACGEAHT 96
Query: 117 VSVTEAGEVYTWGW-----------RECVPSAKVTRDFGSAGSFQ--KDSTGKQSALPTE 163
+++ + G+VY WG EC+ +V R+ S Q + + G +L
Sbjct: 97 LALNDKGQVYAWGLDSDGQLGLQGSEECI---RVPRNIKSLSDIQIVQVACGYYHSLALS 153
Query: 164 QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRH 223
+A + + ++++ SP L+ G+ +VAAGG H
Sbjct: 154 KASEVFCWGQNKYGQLGLGIDCQKQT------------SPQLIKSLLGIPFMQVAAGGAH 201
Query: 224 TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE-----HAASGKDR-PLLVRQ 277
+ +L+ G ++GWG GQLGL P+L+ L + G+D L ++
Sbjct: 202 SFVLTLSGAIFGWGRNKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDHTAALTKE 260
Query: 278 GSVNSSGKAGR----------------------SYVKEIACGGRH-SAVVTDAGALLTFG 314
G V + G G S V ++ACG +H SA V +G + +FG
Sbjct: 261 GGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFG 320
Query: 315 WGLYGQ 320
G GQ
Sbjct: 321 LGGNGQ 326
Score = 36.6 bits (83), Expect = 0.27, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAGWAH 115
CG+ +LA S++ ++ WG + GQ L +T P+ ++ AAG AH
Sbjct: 143 ACGYYHSLALSKASEVFCWGQ-NKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAH 201
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP-------S 168
+T +G ++ WG FG G ++ + L + ++
Sbjct: 202 SFVLTLSGAIFGWG----------RNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGE 251
Query: 169 DKRAG---EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT- 224
D A E V + N S + ++P V G +T+VA G +HT
Sbjct: 252 DHTAALTKEGGVFTFGAGGYGQLGHNSTSHE----INPRKVFELMGSIVTQVACGRQHTS 307
Query: 225 LILSDMGQVWGWGYGGEGQLGLGS 248
+ G+++ +G GG GQLG GS
Sbjct: 308 AFVPSSGRIYSFGLGGNGQLGTGS 331
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 29/122 (23%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPT 255
DE L P K+ V G RHT+ + D G V+ G GQLG
Sbjct: 18 DEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLG---------- 67
Query: 256 PHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGW 315
H S K +V + N + +ACG H+ + D G + + W
Sbjct: 68 --------HEKSRKKPEQVVALDAQN---------IVAVACGEAHTLALNDKGQV--YAW 108
Query: 316 GL 317
GL
Sbjct: 109 GL 110
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2
Length = 1024
Score = 65.5 bits (158), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 25/121 (20%)
Query: 200 TLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
T +P +V GV + +++AG H++ LS G ++ WG GQLGLG
Sbjct: 179 TTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLG------------ 226
Query: 260 PCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
H S KD P L+ +G N V+ +ACGG HSA++T G L TFG G +G
Sbjct: 227 ----HTES-KDDPSLI-EGLDNQK-------VEFVACGGSHSALLTQDGLLFTFGAGKHG 273
Query: 320 Q 320
Q
Sbjct: 274 Q 274
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 48/221 (21%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKH---GETPEPFPLPTEASVVKAAAGWA 114
CG +LA S+ G+L WG + GQ L G+ TP+ + + +AG A
Sbjct: 145 CGDYHSLALSKGGELFAWGQ-NLHGQ--LGVGRKFPSTTTPQIVEHLAGVPLAQISAGEA 201
Query: 115 HCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDST-----------------GKQ 157
H ++++ +G +Y+WG EC G + KD G
Sbjct: 202 HSMALSMSGNIYSWGKNEC-------GQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSH 254
Query: 158 SALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKV 217
SAL T+ AG K + ++E L PCLV G ++T++
Sbjct: 255 SALLTQDGLLFTFGAG----KHGQLGHNSTQNE----------LRPCLVAELVGYRVTQI 300
Query: 218 AAGGRHTLI-LSDMGQVWGWGYGGEGQLGL-GSRIKMVPTP 256
A G HTL +SD+G+V+ +G G +GQLG G+R +++P P
Sbjct: 301 ACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLP 341
Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 29/219 (13%)
Query: 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162
E +++ G H +++++ GE++ WG + V R F S + Q + +P
Sbjct: 137 EKKIIQITCGDYHSLALSKGGELFAWG-QNLHGQLGVGRKFPSTTTPQ--IVEHLAGVPL 193
Query: 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGR 222
Q + + + S + E G P L+ K+ VA GG
Sbjct: 194 AQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGS 253
Query: 223 HTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNS 282
H+ +L+ G ++ +G G GQLG S L PCL G
Sbjct: 254 HSALLTQDGLLFTFGAGKHGQLGHNS-----TQNELRPCLVAELVG-------------- 294
Query: 283 SGKAGRSYVKEIACGGRHS-AVVTDAGALLTFGWGLYGQ 320
V +IACG H+ A V+D G + +FG G GQ
Sbjct: 295 ------YRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQ 327
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus
GN=Herc4 PE=2 SV=1
Length = 1057
Score = 65.1 bits (157), Expect = 8e-10, Method: Composition-based stats.
Identities = 80/313 (25%), Positives = 126/313 (40%), Gaps = 77/313 (24%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
GCG + + G + T G +D GQ L K + PE ++V + G AH
Sbjct: 40 GCGLRHTVFVLDDGTVYTCG-CNDLGQ--LGHEKSRKKPEQVVALDAQNIVAVSCGEAHT 96
Query: 117 VSVTEAGEVYTWGW-----------RECVPSAKVTRDFGSAGSFQ--KDSTGKQSALPTE 163
+++ + G+VY WG EC+ +V R+ S Q + + G +L
Sbjct: 97 LALNDKGQVYAWGLDSDGQLGLQGSEECI---RVPRNIKSLSDIQIVQVACGYYHSLALS 153
Query: 164 QAPP-----SDK--RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITK 216
+A +K + G + +++TS P L+ G+ +
Sbjct: 154 KASEVFCWGQNKYGQLGLGIECQKQTS-------------------PQLIKSLLGIPFMQ 194
Query: 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE-----HAASGKDR 271
VAAGG H+ +L+ G ++GWG GQLGL P+L+ L + G+D
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDH 253
Query: 272 -PLLVRQGSVNSSGKAGR----------------------SYVKEIACGGRH-SAVVTDA 307
L ++G V + G G S V +IACG +H SA V +
Sbjct: 254 TAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSS 313
Query: 308 GALLTFGWGLYGQ 320
G + +FG G GQ
Sbjct: 314 GRIYSFGLGGNGQ 326
Score = 35.8 bits (81), Expect = 0.52, Method: Composition-based stats.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 59 GCGF--ALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAGWAH 115
CG+ +LA S++ ++ WG + GQ L +T P+ ++ AAG AH
Sbjct: 143 ACGYYHSLALSKASEVFCWGQ-NKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAAGGAH 201
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP-------S 168
+T +G ++ WG FG G ++ + L + ++
Sbjct: 202 SFVLTLSGAIFGWG----------RNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGE 251
Query: 169 DKRAG---EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT- 224
D A E V + N S + ++P V G +T++A G +HT
Sbjct: 252 DHTAALTKEGGVFTFGAGGYGQLGHNSTSHE----INPRKVFELMGSIVTQIACGRQHTS 307
Query: 225 LILSDMGQVWGWGYGGEGQLGLGS 248
+ G+++ +G GG GQLG GS
Sbjct: 308 AFVPSSGRIYSFGLGGNGQLGTGS 331
Score = 32.7 bits (73), Expect = 4.0, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 28/152 (18%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGL-GSRIKMVP 254
DE L P K+ V G RHT+ + D G V+ G GQLG SR K
Sbjct: 18 DEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQ 77
Query: 255 TPHL-------IPCLE-HAASGKDRPLLVRQGSVNSSGKAGRSYVKE------------- 293
L + C E H + D+ + G ++S G+ G +E
Sbjct: 78 VVALDAQNIVAVSCGEAHTLALNDKGQVYAWG-LDSDGQLGLQGSEECIRVPRNIKSLSD 136
Query: 294 -----IACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ACG HS ++ A + +G YGQ
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQ 168
>sp|Q8BTU7|RCCD1_MOUSE RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2
Length = 377
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260
L P L+ G+++ KVAAGG H++ LS+ G ++ WG+ GQL L +R
Sbjct: 202 LEPRLLEALQGLRMAKVAAGGWHSVCLSETGDIYIWGWNESGQLALPTRSGTENKAEREE 261
Query: 261 CLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEI-----------ACGGRHSAVVTDAGA 309
E G L V + A + + + +CG RH+AVVT G
Sbjct: 262 ATELNEDGLKEELAVADAGAPAHFIAIQPFPALLDLPLGSDAVMASCGSRHTAVVTRTGE 321
Query: 310 LLTFGWGLYGQ 320
L T+GWG YGQ
Sbjct: 322 LYTWGWGKYGQ 332
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 49/201 (24%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGET------PEPFPLPTEA----SVVK 108
G L +G++ +WG+ G+HG+ E P EA + K
Sbjct: 169 GAEHVLLLCAAGQVFSWGA-----------GRHGQLGHGTLEAELEPRLLEALQGLRMAK 217
Query: 109 AAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168
AAG H V ++E G++Y WGW E Q ALPT +
Sbjct: 218 VAAGGWHSVCLSETGDIYIWGWNE----------------------SGQLALPTRSG--T 253
Query: 169 DKRAGEEVVKRRKTSSAREESENPASGD--EFFTLSP--CLVTLNPGVKITKVAAGGRHT 224
+ +A E +EE +G F + P L+ L G + G RHT
Sbjct: 254 ENKAEREEATELNEDGLKEELAVADAGAPAHFIAIQPFPALLDLPLGSDAVMASCGSRHT 313
Query: 225 LILSDMGQVWGWGYGGEGQLG 245
+++ G+++ WG+G GQLG
Sbjct: 314 AVVTRTGELYTWGWGKYGQLG 334
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 97/253 (38%), Gaps = 42/253 (16%)
Query: 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRD 142
Q+ + H P PL + + +AGW++ VT G V G +A RD
Sbjct: 19 QALGSGNSHHSVYSPEPLHASDDICQVSAGWSYTALVTRGGRVELSG--SVSGAADGCRD 76
Query: 143 FGSAGSFQKDSTGKQSALPTEQA-PPSDKRAGEEVVKRRKTSSAREESENPASGDE---F 198
++ K + QA P GE + + S A+ + E+ S +
Sbjct: 77 VWASEELLVLLRNKGGSSTEVQAWVPGSALQGEPLWVQNLVSGAKGQGEDEPSRESRMGT 136
Query: 199 FTLSPC---LVT--------LNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG 247
L PC VT L P +++ ++ G H L+L GQV+ WG G GQLG G
Sbjct: 137 LPLLPCARAYVTPEPPFCQPLAPELRVRQLELGAEHVLLLCAAGQVFSWGAGRHGQLGHG 196
Query: 248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA 307
+ ++ P L+ L+ K +A GG HS +++
Sbjct: 197 T-LEAELEPRLLEALQGLRMAK------------------------VAAGGWHSVCLSET 231
Query: 308 GALLTFGWGLYGQ 320
G + +GW GQ
Sbjct: 232 GDIYIWGWNESGQ 244
>sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1
PE=2 SV=1
Length = 531
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 120/321 (37%), Gaps = 89/321 (27%)
Query: 5 GSKREENEKMEECKETVVYMWGY--LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF 62
G+ E + + E V+ Y GT +S ++ LCG K + G
Sbjct: 28 GTSANEAIYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEALCG-KKIKSLSYGSGPH 86
Query: 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA---SVVKAAAGWAHCVSV 119
L T+E G + WG G S L +G + P + T V++ A G H +++
Sbjct: 87 VLLTTEDGVVYAWGH---NGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMAL 143
Query: 120 TEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKR 179
GE++ WG+ C G GS ST Q P+ ++
Sbjct: 144 AADGELFAWGYNNC----------GQVGS---GSTANQ---------PTPRK-------- 173
Query: 180 RKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYG 239
++ CL T ++ +A G ++ + D G+V+GWGY
Sbjct: 174 ---------------------VTNCLHT----KRVVNIACGQTSSMAVLDSGEVYGWGYN 208
Query: 240 GEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGR 299
G GQLGLG+ + TP VR +++ V +I CG
Sbjct: 209 GNGQLGLGNNGNQL-TP------------------VRVAALHGMC------VNQIVCGYA 243
Query: 300 HSAVVTDAGALLTFGWGLYGQ 320
H+ +TD G L +G YGQ
Sbjct: 244 HTLALTDEGLLYAWGANTYGQ 264
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1
PE=2 SV=1
Length = 376
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 41/198 (20%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGET------PEPFPLPTEA----SVVK 108
G AL +G++ +WG G+HG+ E P EA ++ +
Sbjct: 166 GAEHALLLDAAGQVFSWGG-----------GRHGQLGHGTLEAELEPRLLEALQGLTMAE 214
Query: 109 AAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG-SFQKDSTGKQSALPTEQAPP 167
AAG H V V+E G++Y WGW E A TR+ G + +++TG
Sbjct: 215 VAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREATGLN---------- 264
Query: 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227
E+ + ++T + + P + F P L+ L G KV+ G RHT ++
Sbjct: 265 ------EDGSQVKRTGRVEDGAPAPFIAVQPF---PALLDLPLGSDAVKVSCGSRHTAVV 315
Query: 228 SDMGQVWGWGYGGEGQLG 245
+ G+++ WG+G GQLG
Sbjct: 316 TRTGELYTWGWGKYGQLG 333
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260
L P L+ G+ + +VAAGG H++ +S+ G ++ WG+ GQL L +R + +
Sbjct: 199 LEPRLLEALQGLTMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTR-NLAEDGETV- 256
Query: 261 CLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK---------------EIACGGRHSAVVT 305
E +D + R G V A V+ +++CG RH+AVVT
Sbjct: 257 AREATGLNEDGSQVKRTGRVEDGAPAPFIAVQPFPALLDLPLGSDAVKVSCGSRHTAVVT 316
Query: 306 DAGALLTFGWGLYGQ 320
G L T+GWG YGQ
Sbjct: 317 RTGELYTWGWGKYGQ 331
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 100/262 (38%), Gaps = 46/262 (17%)
Query: 86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRD-FG 144
L SG+ + P PL V + +A W++ VT G V +A RD +
Sbjct: 21 LGSGRGHQVHSPSPLRAGVDVCRVSASWSYTAFVTRGGRVELS--GSASGAAGGCRDAWA 78
Query: 145 SAGSFQKDSTGK-QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEF--FTL 201
S G G AL AP S R GE + A EE ++P + L
Sbjct: 79 SEGLLLVLRAGPGPEALLQAWAPDSALR-GEPLWAHSVVPEAVEE-DDPGGEAQIGRLPL 136
Query: 202 SPCLVT-----------LNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI 250
PC L P ++ ++ G H L+L GQV+ WG G GQLG G+ +
Sbjct: 137 LPCARAYVSPRPPFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGT-L 195
Query: 251 KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGAL 310
+ P L+ L+ + E+A GG HS V++ G +
Sbjct: 196 EAELEPRLLEALQGLT------------------------MAEVAAGGWHSVCVSETGDI 231
Query: 311 LTFGWGLYGQRM--AKCLAGDG 330
+GW GQ + LA DG
Sbjct: 232 YIWGWNESGQLALPTRNLAEDG 253
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2
PE=2 SV=1
Length = 551
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS---VVKAAAGW 113
G G LAT++ G++ TWG S L +G P + T S V++ A G
Sbjct: 106 GSGPHIVLATTD-GEVFTWGH---NAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGS 161
Query: 114 AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173
H + +T GEV+ WG+ ++G ST Q +P +
Sbjct: 162 YHSLVLTSDGEVFAWGYN-------------NSGQVGSGSTANQ-PIPRRVTGCLQNKVV 207
Query: 174 EEVVKRRKTSSAREESENP--------------ASGDEFFTLSPCLVTLNPGVKITKVAA 219
+ + S A ++ +SG++ +PC V G+++ +VA
Sbjct: 208 MNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ---PTPCRVAALQGIRVQRVAC 264
Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM-VPTPHLI 259
G HTL+L+D GQ++ WG GQLG G++ PTP ++
Sbjct: 265 GYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTPVVV 305
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 31/150 (20%)
Query: 201 LSPCLVTLNPGVK-ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
L PC ++ N K + +VA G H+L+L+ G+V+ WGY GQ+G GS P P +
Sbjct: 140 LVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQ-PIPRRV 198
Query: 260 P-CLEH-----AASGKDRPL-LVRQGSV-----NSSGKAGRS-----------------Y 290
CL++ A G+ + +V G V N +G+ G
Sbjct: 199 TGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIR 258
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQIYAWGANSYGQ 288
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S PIP R+ G K V CG ++A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
GD T+ P + G KI ++ G G H ++ + G+V+ WG+ QLG G+
Sbjct: 81 GDIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGT----- 135
Query: 254 PTPH-LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLT 312
T H L+PC S N S K V E+ACG HS V+T G +
Sbjct: 136 -TNHGLVPC---------------HISTNLSNKQ----VIEVACGSYHSLVLTSDGEVFA 175
Query: 313 FGWGLYGQ 320
+G+ GQ
Sbjct: 176 WGYNNSGQ 183
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG-YNNSGQ--VGSGSTANQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+ V+ A G ++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYN 232
>sp|Q8NDN9|RCBT1_HUMAN RCC1 and BTB domain-containing protein 1 OS=Homo sapiens GN=RCBTB1
PE=2 SV=1
Length = 531
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 116/321 (36%), Gaps = 89/321 (27%)
Query: 5 GSKREENEKMEECKETVVYMWGY--LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGF 62
G+ E + + E V+ Y GT +S ++ LCG K + G
Sbjct: 28 GTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEGLCG-KKIKSLSYGSGPH 86
Query: 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA---SVVKAAAGWAHCVSV 119
L ++E G + WG G S L +G + P + T VV+ A G H +++
Sbjct: 87 VLLSTEDGVVYAWGH---NGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHSMAL 143
Query: 120 TEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKR 179
GEV+ WG+ C G GS ST Q P K +KR
Sbjct: 144 AADGEVFAWGYNNC----------GQVGS---GSTANQ--------PTPRKVTNCLHIKR 182
Query: 180 RKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYG 239
+ +A G ++ + D G+V+GWGY
Sbjct: 183 ----------------------------------VVGIACGQTSSMAVLDNGEVYGWGYN 208
Query: 240 GEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGR 299
G GQLGLG+ + TP VR +++S V +I CG
Sbjct: 209 GNGQLGLGNNGNQL-TP------------------VRVAALHSVC------VNQIVCGYA 243
Query: 300 HSAVVTDAGALLTFGWGLYGQ 320
H+ +TD G L +G YGQ
Sbjct: 244 HTLALTDEGLLYAWGANTYGQ 264
>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1
Length = 376
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKA--AAGWAHC 116
G AL +G++ +WG GQ L G EP L +V A AAG H
Sbjct: 166 GAEHALLLDAAGQVFSWGGGR-HGQ--LGHGTLEAELEPRLLEALQGLVMAEVAAGGWHS 222
Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAG-SFQKDSTGKQSALPTEQAPPSDKRAGEE 175
V V+E G++Y WGW E A TR+ G + +++T E+
Sbjct: 223 VCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREAT----------------ELNED 266
Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWG 235
+ ++T A + + P + F P L+ L G K + G RHT +++ G+++
Sbjct: 267 GSQVKRTGGAEDGAPAPFIAVQPF---PALLDLPMGSDAVKASCGSRHTAVVTRTGELYT 323
Query: 236 WGYGGEGQLG 245
WG+G GQLG
Sbjct: 324 WGWGKYGQLG 333
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260
L P L+ G+ + +VAAGG H++ +S+ G ++ WG+ GQL L +R + +
Sbjct: 199 LEPRLLEALQGLVMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTR-NLAEDGETV- 256
Query: 261 CLEHAASGKDRPLLVRQGSVNSSGKA----------------GRSYVKEIACGGRHSAVV 304
E +D + R G A G VK +CG RH+AVV
Sbjct: 257 AREATELNEDGSQVKRTGGAEDGAPAPFIAVQPFPALLDLPMGSDAVK-ASCGSRHTAVV 315
Query: 305 TDAGALLTFGWGLYGQ 320
T G L T+GWG YGQ
Sbjct: 316 TRTGELYTWGWGKYGQ 331
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPC 261
+P L P ++ ++ G H L+L GQV+ WG G GQLG G+ ++ P L+
Sbjct: 148 APFYRPLAPELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGHGT-LEAELEPRLLEA 206
Query: 262 LEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQR 321
L QG V + E+A GG HS V++ G + +GW GQ
Sbjct: 207 L--------------QGLV----------MAEVAAGGWHSVCVSETGDIYIWGWNESGQL 242
Query: 322 M--AKCLAGDG 330
+ LA DG
Sbjct: 243 ALPTRNLAEDG 253
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus
GN=Rcbtb2 PE=2 SV=1
Length = 551
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS---VVKAAAGW 113
G G LAT++ G++ TWG S L +G P + T S V++ A G
Sbjct: 106 GSGPHIVLATTD-GEVFTWGH---NAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGS 161
Query: 114 AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173
H + +T GEV+ WG+ ++G ST Q +P +
Sbjct: 162 YHSLVLTSDGEVFAWGYN-------------NSGQVGSGSTANQ-PIPRRVTGCLQNKVV 207
Query: 174 EEVVKRRKTSSAREESENP--------------ASGDEFFTLSPCLVTLNPGVKITKVAA 219
+ + S A ++ +SG++ +PC V G+++ +VA
Sbjct: 208 MSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQ---PTPCRVAALQGIRVQRVAC 264
Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM-VPTPHLI 259
G HTL+L+D GQ++ WG GQLG G++ PTP ++
Sbjct: 265 GYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTPVVV 305
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 31/150 (20%)
Query: 201 LSPCLVTLNPGVK-ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
L PC ++ N K + +VA G H+L+L+ G+V+ WGY GQ+G GS P P +
Sbjct: 140 LVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQ-PIPRRV 198
Query: 260 P-CLEH-----AASGKDRPL-LVRQGSV-----NSSGKAGRS-----------------Y 290
CL++ A G+ + +V G V N +G+ G
Sbjct: 199 TGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIR 258
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQIYAWGANSYGQ 288
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S PIP R+ G K V CG ++A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G++Y WG
Sbjct: 232 --NGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYAWG 282
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
GD T+ P + G KI ++ G G H ++ + G+V+ WG+ QLG G+
Sbjct: 81 GDIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGT----- 135
Query: 254 PTPH-LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLT 312
T H L+PC S N S K V E+ACG HS V+T G +
Sbjct: 136 -TNHGLVPC---------------HISTNLSNKQ----VIEVACGSYHSLVLTSDGEVFA 175
Query: 313 FGWGLYGQ 320
+G+ GQ
Sbjct: 176 WGYNNSGQ 183
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG-YNNSGQ--VGSGSTANQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+ V+ A G ++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVMSIACGQMCSMAVVDTGEVYVWGYN 232
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 25/109 (22%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
VK V +GG+H L L+ G+V+ WG G +G+LG G+R+ DR
Sbjct: 4136 VKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSY-----------------DR 4178
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
P LV + S V +IACG HSA +T +G +LT+G G YG+
Sbjct: 4179 PKLVEHLNGMS--------VADIACGSAHSAAITASGHVLTWGKGRYGR 4219
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 27/110 (24%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
VK V +GG+H L L+ G+V+ WG G +G+LG G+R + D+
Sbjct: 3073 VKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTL-----------------DK 3115
Query: 272 PLLVRQGSVNSSGKAGRS-YVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
P LV +A R+ ++++ACG HSA ++ G L T+G G YG+
Sbjct: 3116 PRLV---------EALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGR 3156
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSG----KHGETPEPFPLPTEASVVKAAAGWA 114
G F+LA + +G++ TWG D Y G +H P+P V+ A G
Sbjct: 3239 GAQFSLALTRAGEVWTWGKGD-----YYRLGHGGDQHVRKPQPIGGLRGRRVIHVAVGAL 3293
Query: 115 HCVSVTEAGEVYTWG 129
HC++VT+AG+VY WG
Sbjct: 3294 HCLAVTDAGQVYAWG 3308
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 79/222 (35%), Gaps = 66/222 (29%)
Query: 46 LCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA- 104
L G + CG G L ++ + +WG D Y G+ G P E+
Sbjct: 4237 LLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGD-----YGKLGRGGSDGCKLPYKIESL 4291
Query: 105 ---SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161
VVK G V++T++G VYTWG G F + G
Sbjct: 4292 AGLGVVKVECGSQFSVALTKSGAVYTWG----------------KGDFHRLGHG------ 4329
Query: 162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGG 221
+ V+R K +A + G KI +A G
Sbjct: 4330 -----------SVDHVRRPKKVAALQ-----------------------GKKIISIATGS 4355
Query: 222 RHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE 263
H + SD G+V+ WG EGQLG G+ + + P L+ L+
Sbjct: 4356 LHCVACSDSGEVYTWGDNDEGQLGDGT-VTAIQRPRLVAALQ 4396
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 114/309 (36%), Gaps = 62/309 (20%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAAA---G 112
GG S+ GK+ G + L G P P LP VVK A G
Sbjct: 3025 AGGSKSLFIVSQDGKVYACGEGTN---GRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSG 3081
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
H +++T G+V++WG E G G + + K + +A K+
Sbjct: 3082 GKHALALTLDGKVFSWGEGE----------DGKLGHGNRTTLDKPRLVEALRA----KKI 3127
Query: 173 GEEVVKRRKTSSAREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGR 222
+ +++ + E GD L P LVT G ++ +VA G R
Sbjct: 3128 RDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSR 3187
Query: 223 --HTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE-----HAASGKDRPL-L 274
TL L++ G V+ WG G G+LG G + TPH I L G L L
Sbjct: 3188 DAQTLALTEDGAVFSWGDGDFGKLGRGGS-EGSDTPHEIERLSGIGVVQIECGAQFSLAL 3246
Query: 275 VRQGSV--------NSSGKAGRSYVKE--------------IACGGRHSAVVTDAGALLT 312
R G V G G +V++ +A G H VTDAG +
Sbjct: 3247 TRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIGGLRGRRVIHVAVGALHCLAVTDAGQVYA 3306
Query: 313 FGWGLYGQR 321
+G +GQ+
Sbjct: 3307 WGDNDHGQQ 3315
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHC 116
G F++A S G+L TWG A G + G P +V A AHC
Sbjct: 779 AGSQFSVALSSEGQLYTWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHC 838
Query: 117 VSVTEAGEVYTWG 129
++++ +GEV+ WG
Sbjct: 839 LALSSSGEVFGWG 851
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 35/202 (17%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT------EASVVKAA-- 110
GC ++ A + G L+TWG +Y G HG + + LPT + VV A
Sbjct: 676 GCSYSAAITCGGNLLTWGRG-----TYARLG-HGNSDDR-SLPTLVVALSDHMVVDVALG 728
Query: 111 AGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170
+G AH +++T G V+ WG D+G G+ + G + E P +
Sbjct: 729 SGDAHSLALTSEGLVFAWG----------DGDYGKLGN--GNCNGSLQPILVESLPRVQR 776
Query: 171 RAGEEVVKRRKTSSAREESENPAS--GDEFFTLS------PCLVTLNPGVKITKVAAGGR 222
+S + + A+ G + S P LV+ +I VA
Sbjct: 777 VFAGSQFSVALSSEGQLYTWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVA 836
Query: 223 HTLILSDMGQVWGWGYGGEGQL 244
H L LS G+V+GWG Q+
Sbjct: 837 HCLALSSSGEVFGWGRNDSQQI 858
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 79/215 (36%), Gaps = 33/215 (15%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSA-LPTEQA 165
V +G HC+++T GEVY WG E R + G A + A
Sbjct: 4139 VAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNRMSYDRPKLVEHLNGMSVADIACGSA 4198
Query: 166 PPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVA--AGGRH 223
+ A V+ K R GD L P LV G + +A +G
Sbjct: 4199 HSAAITASGHVLTWGKGRYGRL-----GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQ 4253
Query: 224 TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSS 283
TL ++D VW WG G G+LG G + G P +
Sbjct: 4254 TLCITDDDNVWSWGDGDYGKLGRG-----------------GSDGCKLPYKI-------E 4289
Query: 284 GKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
AG VK + CG + S +T +GA+ T+G G +
Sbjct: 4290 SLAGLGVVK-VECGSQFSVALTKSGAVYTWGKGDF 4323
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248
G ++ VA G H L ++D GQV+ WG GQ G G+
Sbjct: 3282 GRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGN 3319
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
G G +LA + G + WG D L +G + +P + + V + AG
Sbjct: 728 GSGDAHSLALTSEGLVFAWGDGD---YGKLGNGNCNGSLQPILVESLPRVQRVFAGSQFS 784
Query: 117 VSVTEAGEVYTWGWRECVPSAKVTR 141
V+++ G++YTWG C+ V R
Sbjct: 785 VALSSEGQLYTWGKATCLGHQLVER 809
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 46 LCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS 105
L G + CG LA +E G + +WG D G+ + +TP +
Sbjct: 3174 LAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGD-FGKLGRGGSEGSDTPHEIERLSGIG 3232
Query: 106 VVKAAAGWAHCVSVTEAGEVYTWG 129
VV+ G +++T AGEV+TWG
Sbjct: 3233 VVQIECGAQFSLALTRAGEVWTWG 3256
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 27/101 (26%)
Query: 221 GRHTLILSDMGQVWGWGYGGEGQLGLG-SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGS 279
GRH L + + WG G + +LG G + + VPT I LE
Sbjct: 625 GRHFLAIDSNHNAYSWGTGEDHRLGHGDTHARAVPTK--IAALEQHC------------- 669
Query: 280 VNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ + CG +SA +T G LLT+G G Y +
Sbjct: 670 -----------VQSVYCGCSYSAAITCGGNLLTWGRGTYAR 699
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens
GN=RPGR PE=1 SV=2
Length = 1020
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 26/119 (21%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPC 261
+P LV+ P K+ +VA GG HT++L++ V+ +G G GQLGLG+ + P +I
Sbjct: 234 TPQLVSEIPE-KVIQVACGGEHTVVLTE-NAVYTFGLGQFGQLGLGTFLFETSEPKVIEN 291
Query: 262 LEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ +D+ + SY I+CG H+A++TD G + TFG G +G+
Sbjct: 292 I------RDQTI---------------SY---ISCGENHTALITDIGLMYTFGDGRHGK 326
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 54/139 (38%), Gaps = 31/139 (22%)
Query: 204 CLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR--------IKMVPT 255
C+ L P K+ A G HTL+ ++ G V+ G EGQLGLG I +
Sbjct: 80 CVKALKPE-KVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTS 138
Query: 256 PHLIPCLEHAASGKDRPLLVRQGSV-----NSSGKAGRSYVKE---------------IA 295
H I L +A L G + NS G+ G V I+
Sbjct: 139 EHKIKQL--SAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGKPVSWIS 196
Query: 296 CGGRHSAVVTDAGALLTFG 314
CG HSA VT G L FG
Sbjct: 197 CGYYHSAFVTTDGELYVFG 215
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH 257
F T P ++ I+ ++ G HT +++D+G ++ +G G G+LGLG T H
Sbjct: 281 FETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLE---NFTNH 337
Query: 258 LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAV 303
IP L R VK +ACGG H V
Sbjct: 338 FIPTL--------------------CSNFLRFIVKLVACGGCHMVV 363
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL-----EHAASGKDR 271
++ G H+ +++ +++ +G GQLGLGS+ + P + L + AA G++
Sbjct: 40 LSCGDEHSAVVTGNNKLYMFGSNNWGQLGLGSK-SAISKPTCVKALKPEKVKLAACGRNH 98
Query: 272 PLLVRQGSV------NSSGKAG------------------RSYVKEIACGGRHSAVVTDA 307
L+ +G N+ G+ G +K+++ G SA +T+
Sbjct: 99 TLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTED 158
Query: 308 GALLTFGWGLYGQ 320
G L +G GQ
Sbjct: 159 GRLFMWGDNSEGQ 171
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1
Length = 1003
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 70/152 (46%), Gaps = 31/152 (20%)
Query: 200 TLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG--SRIKMVP--- 254
+ P + G+KI +V+ G H+L LS+ G V+ WG EGQLGLG SR + +P
Sbjct: 115 SFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQAIPQKV 174
Query: 255 -TPHLIPCLEHAASGKDRPLLVRQGS-----VNSSGKAGRS--YVKE------------- 293
+ IP + AA G L G+ N SG+ S VKE
Sbjct: 175 KSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKN 234
Query: 294 -----IACGGRHSAVVTDAGALLTFGWGLYGQ 320
I+CG H+AV+T+ G + TFG GQ
Sbjct: 235 LSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQ 266
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 119/322 (36%), Gaps = 88/322 (27%)
Query: 25 WGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84
WG L + + PI A D D+ G ++A GK+ WG A EGQ
Sbjct: 51 WGQLGQRRDQSTERPEPIQAL---NDLHVDLVSCGKEHSVAVCHKGKVFAWG-AGSEGQL 106
Query: 85 YLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTEAGEVYTWGWR------- 131
+ GE E +PT+ +++ + G H ++++E G V++WG
Sbjct: 107 GI-----GEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGL 161
Query: 132 ----------------ECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
E +P A+V G SF TG + R+G+
Sbjct: 162 GKNSRSQAIPQKVKSLEGIPLAQVAA--GGTHSFALSLTGTSFGWGS-------NRSGQL 212
Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWG 235
+ K +E+ P S LS + ++ G HT +L++ GQV+
Sbjct: 213 ALSGNKV---KEQIYKPHSIGALKNLS-----------VIYISCGYEHTAVLTEEGQVFT 258
Query: 236 WGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIA 295
+G GQL P+P SG+ P L+ G GR V +I
Sbjct: 259 FGGNSSGQLQ--------PSPR---------SGQRGPQLIE-------GIGGR--VSQIE 292
Query: 296 CGGRHS-AVVTDAGALLTFGWG 316
C H+ A V G +++ G G
Sbjct: 293 CASYHTIAYVYTTGQVVSLGRG 314
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris
GN=RPGR PE=2 SV=1
Length = 1003
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 27/113 (23%)
Query: 210 PGV--KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAAS 267
PG+ K+ +VA GG HT++L++ V+ +G G GQLGLG+ + P I EH
Sbjct: 239 PGIPGKVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETSVPKAI---EHIKD 294
Query: 268 GKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
K + IACG H+A++TD G + TFG G +G+
Sbjct: 295 QK---------------------ISFIACGENHTALITDMGLMYTFGDGRHGK 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 204 CLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL- 262
C+ L P K+ A G HTL+ ++ G+V+ G EGQLGLG + T HLI
Sbjct: 80 CVKALKPE-KVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGD-TEERSTFHLISFFT 137
Query: 263 ------EHAASGKDRPLLVRQGSV-----NSSGKAGRSYVKE---------------IAC 296
+ +A L G + NS G+ G V I+C
Sbjct: 138 SQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENVTNVCVPQQVTVGKPISWISC 197
Query: 297 GGRHSAVVTDAGALLTFG 314
G HSA VT G L TFG
Sbjct: 198 GYYHSAFVTTEGQLYTFG 215
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG---SRIKMVP 254
F T P + KI+ +A G HT +++DMG ++ +G G G+LGLG S + +P
Sbjct: 281 FETSVPKAIEHIKDQKISFIACGENHTALITDMGLMYTFGDGRHGKLGLGLENSTNQFIP 340
Query: 255 T 255
T
Sbjct: 341 T 341
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 30/135 (22%)
Query: 215 TKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL-----EHAASGK 269
T ++ G HT +++ +++ +G GQLGLGS+ V P + L + AA G+
Sbjct: 38 TFLSCGDEHTAVVTGNNKLYMFGSNNWGQLGLGSK-STVSKPTCVKALKPEKVKFAACGR 96
Query: 270 DRPLLVRQGSV------NSSGKAG------------------RSYVKEIACGGRHSAVVT 305
+ L+ +G N+ G+ G + +K+++ G SA +T
Sbjct: 97 NHTLVSTEGGKVYAAGGNNEGQLGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALT 156
Query: 306 DAGALLTFGWGLYGQ 320
+ G L +G GQ
Sbjct: 157 EDGELFMWGDNSEGQ 171
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVK----AAAGW 113
G + A +E G+L WG + EGQ L E +P + +V K + G+
Sbjct: 147 AGSNTSAALTEDGELFMWGD-NSEGQIGL------ENVTNVCVPQQVTVGKPISWISCGY 199
Query: 114 AHCVSVTEAGEVYTWGWREC 133
H VT G++YT+G EC
Sbjct: 200 YHSAFVTTEGQLYTFGEPEC 219
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6
PE=2 SV=2
Length = 1022
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 106/270 (39%), Gaps = 83/270 (30%)
Query: 54 DVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGE---TPEPFPLPTEASVVKAA 110
D+ G +LA G++ WG A EGQ L G+ E TP+ + +++ +
Sbjct: 78 DLVSCGKEHSLAVCHKGRVFAWG-AGSEGQ--LGIGEFKEISFTPKKIMTLNDIKIIQVS 134
Query: 111 AGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170
G H +++++ +V++WG G G GK+ P+ QA P
Sbjct: 135 CGHYHSLALSKDSQVFSWG----------KNSHGQLG------LGKE--FPS-QASPQRV 175
Query: 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDM 230
R+ E G+ + +VAAGG H+ LS
Sbjct: 176 RSLE------------------------------------GIPLAQVAAGGAHSFALSLC 199
Query: 231 GQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290
G +GWG GQL L R VP ++PL V G++ + G
Sbjct: 200 GTSFGWGSNSAGQLALSGR--NVPV------------QSNKPLSV--GALKNLG------ 237
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V I+CG H+AV+T G + TFG GQ
Sbjct: 238 VVYISCGDAHTAVLTQDGKVFTFGDNRSGQ 267
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 32/142 (22%)
Query: 209 NPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLG-LGSRIKMVPTPHLIPCLEH--- 264
+PG ++ + A+G RH+L+L +V G GQLG G++ +P P I LE
Sbjct: 20 SPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEP--IQALETLIV 77
Query: 265 --AASGKDRPLLV-RQGSV-----NSSGKAGRSYVKEI------------------ACGG 298
+ GK+ L V +G V S G+ G KEI +CG
Sbjct: 78 DLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGH 137
Query: 299 RHSAVVTDAGALLTFGWGLYGQ 320
HS ++ + ++G +GQ
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQ 159
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2
PE=2 SV=1
Length = 551
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 201 LSPCLVTLNPGVK-ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
L PC ++ N K + +VA G H+L+L+ G+V+ WGY GQ+G GS + P P +
Sbjct: 140 LVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQ-PIPRRV 198
Query: 260 P-CLEH-----AASGKDRPL-LVRQGSV-----NSSGKAGRS-----------------Y 290
CL++ A G+ + +V G V N +G+ G
Sbjct: 199 TGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIR 258
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQVYAWGANSYGQ 288
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM-VPTP 256
+PC V G+++ +VA G HTL+L+D GQV+ WG GQLG G++ PTP
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTP 302
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S + PIP R+ G K V CG +A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
GD T+ P + G KI ++ G G H ++ + G+V+ WG+ QLG G+
Sbjct: 81 GDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGT----- 135
Query: 254 PTPH-LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLT 312
T H L+PC S N S K V E+ACG HS V+T G +
Sbjct: 136 -TNHGLVPC---------------HISTNLSNKQ----VIEVACGSYHSLVLTSDGEVFA 175
Query: 313 FGWGLYGQ 320
+G+ GQ
Sbjct: 176 WGYNNSGQ 183
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG-YNNSGQ--VGSGSTVNQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+ VV A G C++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYN 232
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2
PE=2 SV=1
Length = 551
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 201 LSPCLVTLNPGVK-ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
L PC ++ N K + +VA G H+L+L+ G+V+ WGY GQ+G GS + P P +
Sbjct: 140 LVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQ-PIPRRV 198
Query: 260 P-CLEH-----AASGKDRPL-LVRQGSV-----NSSGKAGRS-----------------Y 290
CL++ A G+ + +V G V N +G+ G
Sbjct: 199 TGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYNGNGQLGLGNSGNQPTPCRVAALQGIR 258
Query: 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V+ +ACG H+ V+TD G + +G YGQ
Sbjct: 259 VQRVACGYAHTLVLTDEGQVYAWGANSYGQ 288
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM-VPTP 256
+PC V G+++ +VA G HTL+L+D GQV+ WG GQLG G++ PTP
Sbjct: 247 TPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTP 302
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 22 VYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSA 78
V+ WGY G S + PIP R+ G K V CG +A ++G++ WG
Sbjct: 173 VFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGY- 231
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129
G L G G P P + V + A G+AH + +T+ G+VY WG
Sbjct: 232 --NGNGQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWG 282
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAG-GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
GD T+ P + G KI ++ G G H ++ + G+V+ WG+ QLG G+
Sbjct: 81 GDVQSTIEPRRLDSLNGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGT----- 135
Query: 254 PTPH-LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLT 312
T H L+PC S N S K V E+ACG HS V+T G +
Sbjct: 136 -TNHGLVPC---------------HISTNLSNKQ----VIEVACGSYHSLVLTSDGEVFA 175
Query: 313 FGWGLYGQ 320
+G+ GQ
Sbjct: 176 WGYNNSGQ 183
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 42 IPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP 99
+P + S K V CG +L + G++ WG ++ GQ + SG P P
Sbjct: 141 VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG-YNNSGQ--VGSGSTVNQPIPRR 197
Query: 100 LP---TEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131
+ VV A G C++V + GEVY WG+
Sbjct: 198 VTGCLQNKVVVTIACGQMCCMAVVDTGEVYVWGYN 232
>sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1
Length = 513
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 211 GVKITKVAAG--GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE----- 263
GV++ VA+G H+L+++ G++W WG +GQLG G IK + P LI L+
Sbjct: 138 GVQVRSVASGSCAAHSLLITVEGKLWSWGRNDKGQLGHGD-IKRIDVPKLIESLKGEVFV 196
Query: 264 HAASGKDRPL-LVRQGSV-----NSSGKAGRSY-----------------VKEIACGGRH 300
HAA G++ L L GSV N G+ G + ++ACG
Sbjct: 197 HAACGRNHTLALTENGSVYAFGENKMGQLGLGNKTDAVPSPAQILYNGQPITKVACGAEF 256
Query: 301 SAVVTDAGALLTFGWGLYGQ 320
S ++ G L +FG YGQ
Sbjct: 257 SMIMDCKGNLYSFGCPEYGQ 276
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 100/276 (36%), Gaps = 73/276 (26%)
Query: 53 KDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
+ V G C +L + GKL +WG +D+GQ K + P+ V AA
Sbjct: 142 RSVASGSCAAHSLLITVEGKLWSWGR-NDKGQLGHGDIKRIDVPKLIESLKGEVFVHAAC 200
Query: 112 GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR 171
G H +++TE G VY FG Q K A+P
Sbjct: 201 GRNHTLALTENGSVYA---------------FGENKMGQLGLGNKTDAVP---------- 235
Query: 172 AGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMG 231
SP + N G ITKVA G ++I+ G
Sbjct: 236 ------------------------------SPAQILYN-GQPITKVACGAEFSMIMDCKG 264
Query: 232 QVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVN-SSGKAGR-- 288
++ +G GQLG S K + I D L+ R+ ++ K G+
Sbjct: 265 NLYSFGCPEYGQLGHNSDGKYIARAQRIEY--------DCELIARRIAIFIEKTKDGQIL 316
Query: 289 ----SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V++IACG HS ++ + ++G+G YG+
Sbjct: 317 PVPNVVVRDIACGINHSLILDSQKRVFSWGFGGYGR 352
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG-SRIKMVP 254
P V + +A G H+LIL +V+ WG+GG G+LG R +MVP
Sbjct: 319 PNVVVRDIACGINHSLILDSQKRVFSWGFGGYGRLGHSEQRDEMVP 364
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
VK V +GGRH L+ G+V+ WG G +G+LG SR+ D+
Sbjct: 3047 VKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNC-----------------DK 3089
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
P L+ + K R +++IACG HSA +T +G L T+G G YG+
Sbjct: 3090 PRLIE------ALKTKR--IRDIACGSSHSAALTSSGELYTWGLGEYGR 3130
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 29/122 (23%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
+P L+ V I KVA +GG+H L LS G+V+ WG +G+LG G+R
Sbjct: 4027 TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR---------S 4077
Query: 260 PCLEHAASGKDRPLLVRQGSVNSSGKAGRSY-VKEIACGGRHSAVVTDAGALLTFGWGLY 318
PC DRP ++ ++ R V ++A GG HSA VT AG L T+G G Y
Sbjct: 4078 PC--------DRPRVI---------ESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRY 4120
Query: 319 GQ 320
G+
Sbjct: 4121 GR 4122
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 200 TLSPCLVTLNPGVKITKVAA--GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH 257
TL+P LV I K+AA G H L L+ G+V+ WG G G+LG G + + P
Sbjct: 481 TLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPL-EEPK 539
Query: 258 LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
+I SGK +V IACG +SA +T G L T+G G
Sbjct: 540 VISAF--------------------SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGN 579
Query: 318 YGQ 320
YG+
Sbjct: 580 YGR 582
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 113/304 (37%), Gaps = 71/304 (23%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3034 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3092
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQ 157
+ A G +H ++T +GE+YTWG E +G G D+T
Sbjct: 3093 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE----------YGRLG--HGDNT--- 3137
Query: 158 SALPTEQAPPSDK-RAGEEVVKRRKTSSAREESENPASGDEFFTLS-------------- 202
T+ P K G V+ + + +++ A DE S
Sbjct: 3138 ----TQLKPKMVKVLLGHRVI---QVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 3190
Query: 203 -----PCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH 257
P + G + ++ G + +L L+ G VW WG G +LG GS + V P
Sbjct: 3191 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVH-VRKPQ 3249
Query: 258 LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
++ G G+ V +A G H VTD+G + +G
Sbjct: 3250 VV-----------------------EGLRGKKIV-HVAVGALHCLAVTDSGQVYAWGDND 3285
Query: 318 YGQR 321
+GQ+
Sbjct: 3286 HGQQ 3289
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 658 DVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 716
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 717 GSTHCLALTEDSEVHSWG 734
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4205 GSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 4263
Query: 119 VTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4264 CTEDGEVYTWG 4274
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 104/274 (37%), Gaps = 49/274 (17%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS-VVKAAA---G 112
GG A + GK+ G A + S G P P + +S VVK A G
Sbjct: 2998 AGGSKSLFAVTVEGKVYACGEATNGRLGLGISS--GTVPIPRQITALSSYVVKKVAVHSG 3055
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
H ++T G+V++WG D G G F + + K + + A
Sbjct: 3056 GRHATALTVDGKVFSWG----------EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIA 3105
Query: 173 GEEVVKRRKTSSARE------ESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGR--HT 224
TSS E GD L P +V + G ++ +VA G R T
Sbjct: 3106 CGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQT 3165
Query: 225 LILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSG 284
L L+D G V+ WG G G+LG G + G + P + + +N G
Sbjct: 3166 LALTDEGLVFSWGDGDFGKLGRG-----------------GSEGCNIPQNIER--LNGQG 3206
Query: 285 KAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
V +I CG + S +T +G + T+G G Y
Sbjct: 3207 ------VCQIECGAQFSLALTKSGVVWTWGKGDY 3234
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 48/267 (17%)
Query: 22 VYMWGYLPG-------TSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKL 72
VY WG G T P + P + + G + K V CG ++ A + G+L
Sbjct: 516 VYSWGCGDGGRLGHGDTVPLEEP---KVISAFSGKQAGKHVVHIACGSTYSAAITAEGEL 572
Query: 73 ITWG----------SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
TWG S++DE L +G G + V +G A ++VTE
Sbjct: 573 YTWGRGNYGRLGHGSSEDEAIPMLVAGLKG---------LKVIDVACGSGDAQTLAVTEN 623
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK-RAGEE----VV 177
G+V++WG D+G G D + Q K R G + +
Sbjct: 624 GQVWSWG----------DGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALT 673
Query: 178 KRRKTSS-AREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGW 236
K + S + +++ G E P L+ G K+ VAAG H L L++ +V W
Sbjct: 674 KDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSW 733
Query: 237 GYGGEGQLGLGSRIKMVPTPHLIPCLE 263
G + Q R+ P P +P L+
Sbjct: 734 GSNDQCQHFDTLRVTK-PEPAALPGLD 759
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 85/226 (37%), Gaps = 55/226 (24%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWGW----------RECVPSAKVTRDFGSAGSFQKDSTGK 156
V +G HC++++ GEVY+WG R +V + G
Sbjct: 4042 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 4101
Query: 157 QSALPTEQAPPSDKRAGEEVV--KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKI 214
SA T AG+ K R +SE+ L P LV G ++
Sbjct: 4102 HSACVTA--------AGDLYTWGKGRYGRLGHSDSED--------QLKPKLVEALQGHRV 4145
Query: 215 TKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRP 272
+A +G TL L+D VW WG G G+LG G + G P
Sbjct: 4146 VDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG-----------------GSDGCKVP 4188
Query: 273 LLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
+ ++S G V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4189 M-----KIDSLTGLG---VVKVECGSQFSVALTKSGAVYTWGKGDY 4226
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGE---TPEPFPLPTEA----SVVKAAAGWAHC 116
LA S G++ +WG A+D GK G +P P E+ VV AAG AH
Sbjct: 4052 LALSSEGEVYSWGEAED--------GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 4103
Query: 117 VSVTEAGEVYTWG 129
VT AG++YTWG
Sbjct: 4104 ACVTAAGDLYTWG 4116
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248
G + P +V G KI VA G H L ++D GQV+ WG GQ G G+
Sbjct: 3240 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGT 3293
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 87/212 (41%), Gaps = 53/212 (25%)
Query: 105 SVVKAAA--GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162
++VK AA H +++ GEVY+WG C G G G +P
Sbjct: 494 NIVKIAAHSDGHHYLALAATGEVYSWG---C----------GDGGRL-----GHGDTVPL 535
Query: 163 EQ----APPSDKRAGEEVVKRR--KTSSAREESE---------------NPASGDEFFTL 201
E+ + S K+AG+ VV T SA +E + +S DE
Sbjct: 536 EEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAI-- 593
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
P LV G+K+ VA +G TL +++ GQVW WG G G+LG G TP LI
Sbjct: 594 -PMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGS-DGCKTPKLI 651
Query: 260 PCLEHAASGKDR------PLLVRQGSVNSSGK 285
L+ K R L + G V S GK
Sbjct: 652 EKLQDLDVVKVRCGSQFSIALTKDGQVYSWGK 683
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE 263
G K+ +A G H + ++ G+V+ WG EGQLG G+ + P L+ L+
Sbjct: 4248 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT-TNAIQRPRLVAALQ 4299
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAA 111
CG G L ++ + +WG D Y G+ G P+ ++ VVK
Sbjct: 4150 CGSGDAQTLCLTDDDTVWSWGDGD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 4204
Query: 112 GWAHCVSVTEAGEVYTWG 129
G V++T++G VYTWG
Sbjct: 4205 GSQFSVALTKSGAVYTWG 4222
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
VK V +GGRH L+ G+V+ WG G +G+LG SR+ D+
Sbjct: 3048 VKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNC-----------------DK 3090
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
P L+ + K R +++IACG HSA +T +G L T+G G YG+
Sbjct: 3091 PRLIE------ALKTKR--IRDIACGSSHSAALTSSGELYTWGLGEYGR 3131
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 29/122 (23%)
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
+P L+ V I KVA +GG+H L LS G+V+ WG +G+LG G+R
Sbjct: 4029 TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR---------S 4079
Query: 260 PCLEHAASGKDRPLLVRQGSVNSSGKAGRSY-VKEIACGGRHSAVVTDAGALLTFGWGLY 318
PC DRP ++ ++ R V ++A GG HSA VT AG L T+G G Y
Sbjct: 4080 PC--------DRPRVI---------ESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRY 4122
Query: 319 GQ 320
G+
Sbjct: 4123 GR 4124
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 201 LSPCLVTLNPGVKITKVAA--GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHL 258
L+P LV I K+AA G H L L+ G+V+ WG G G+LG G + + P +
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPL-EEPKV 541
Query: 259 IPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
I SGK +V IACG +SA +T G L T+G G Y
Sbjct: 542 ISAF--------------------SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNY 581
Query: 319 GQ 320
G+
Sbjct: 582 GR 583
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 113/304 (37%), Gaps = 71/304 (23%)
Query: 41 PIPARLCGGDSW---KDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEP 97
PIP ++ S+ K G A A + GK+ +WG DD G+ S + + P
Sbjct: 3035 PIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDD-GKLGHFSRMNCDKPRL 3093
Query: 98 FPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQ 157
+ A G +H ++T +GE+YTWG E +G G D+T
Sbjct: 3094 IEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE----------YGRLG--HGDNT--- 3138
Query: 158 SALPTEQAPPSDK-RAGEEVVKRRKTSSAREESENPASGDEFFTLS-------------- 202
T+ P K G V+ + + +++ A DE S
Sbjct: 3139 ----TQLKPKMVKVLLGHRVI---QVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 3191
Query: 203 -----PCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH 257
P + G + ++ G + +L L+ G VW WG G +LG GS + V P
Sbjct: 3192 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVH-VRKPQ 3250
Query: 258 LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
++ G G+ V +A G H VTD+G + +G
Sbjct: 3251 VV-----------------------EGLRGKKIV-HVAVGALHCLAVTDSGQVYAWGDND 3286
Query: 318 YGQR 321
+GQ+
Sbjct: 3287 HGQQ 3290
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 54 DVCGGGCG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
DV CG F++A ++ G++ +WG D++ + T +H P+ V+ AA
Sbjct: 659 DVIKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTE-EHVRYPKLLEGLQGKKVIDVAA 717
Query: 112 GWAHCVSVTEAGEVYTWG 129
G HC+++TE EV++WG
Sbjct: 718 GSTHCLALTEDSEVHSWG 735
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118
G F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 4207 GSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 4265
Query: 119 VTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 4266 CTEDGEVYTWG 4276
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 108/280 (38%), Gaps = 61/280 (21%)
Query: 57 GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG--ETPEPFPLPTEAS-----VVKA 109
GG A + GK+ + G A T+G+ G + P+P + + VVK
Sbjct: 2999 AGGSKSLFAVTVEGKVYSCGEA--------TNGRLGLGMSSGTVPIPRQITALSSYVVKK 3050
Query: 110 AA---GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAP 166
A G H ++T G+V++WG D G G F + + K + +
Sbjct: 3051 VAVHSGGRHATALTVDGKVFSWG----------EGDDGKLGHFSRMNCDKPRLIEALKTK 3100
Query: 167 PSDKRAGEEVVKRRKTSSARE------ESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220
A TSS E GD L P +V + G ++ +VA G
Sbjct: 3101 RIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACG 3160
Query: 221 GR--HTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG 278
R TL L+D G V+ WG G G+LG G + G + P + +
Sbjct: 3161 SRDAQTLALTDEGLVFSWGDGDFGKLGRG-----------------GSEGCNIPQNIER- 3202
Query: 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
+N G V +I CG + S +T +G + T+G G Y
Sbjct: 3203 -LNGQG------VCQIECGAQFSLALTKSGVVWTWGKGDY 3235
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 48/267 (17%)
Query: 22 VYMWGYLPG-------TSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKL 72
VY WG G T P + P + + G + K V CG ++ A + G+L
Sbjct: 517 VYSWGCGDGGRLGHGDTVPLEEP---KVISAFSGKQAGKHVVHIACGSTYSAAITAEGEL 573
Query: 73 ITWG----------SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
TWG S++DE L +G G + V +G A ++VTE
Sbjct: 574 YTWGRGNYGRLGHGSSEDEAIPMLVAGLKG---------LKVIDVACGSGDAQTLAVTEN 624
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK-RAGEE----VV 177
G+V++WG D+G G D + Q K R G + +
Sbjct: 625 GQVWSWG----------DGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALT 674
Query: 178 KRRKTSS-AREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGW 236
K + S + +++ G E P L+ G K+ VAAG H L L++ +V W
Sbjct: 675 KDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSW 734
Query: 237 GYGGEGQLGLGSRIKMVPTPHLIPCLE 263
G + Q R+ P P +P L+
Sbjct: 735 GSNDQCQHFDTLRVTK-PEPTALPGLD 760
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 85/226 (37%), Gaps = 55/226 (24%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWGW----------RECVPSAKVTRDFGSAGSFQKDSTGK 156
V +G HC++++ GEVY+WG R +V + G
Sbjct: 4044 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 4103
Query: 157 QSALPTEQAPPSDKRAGEEVV--KRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKI 214
SA T AG+ K R +SE+ L P LV G ++
Sbjct: 4104 HSACVTA--------AGDLYTWGKGRYGRLGHSDSED--------QLKPKLVEALQGHRV 4147
Query: 215 TKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRP 272
+A +G TL L+D VW WG G G+LG G + G P
Sbjct: 4148 IDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG-----------------GSDGCKVP 4190
Query: 273 LLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
+ ++S G V ++ CG + S +T +GA+ T+G G Y
Sbjct: 4191 M-----KIDSLTGLG---VVKVECGSQFSVALTKSGAVYTWGKGDY 4228
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGE---TPEPFPLPTEA----SVVKAAAGWAHC 116
LA S G++ +WG A+D GK G +P P E+ VV AAG AH
Sbjct: 4054 LALSSEGEVYSWGEAED--------GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 4105
Query: 117 VSVTEAGEVYTWG 129
VT AG++YTWG
Sbjct: 4106 ACVTAAGDLYTWG 4118
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248
G + P +V G KI VA G H L ++D GQV+ WG GQ G G+
Sbjct: 3241 GSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGT 3294
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 86/212 (40%), Gaps = 53/212 (25%)
Query: 105 SVVKAAA--GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162
++VK AA H +++ GEVY+WG G G G +P
Sbjct: 495 NIVKIAAHSDGHHYLALAATGEVYSWGC-------------GDGGRL-----GHGDTVPL 536
Query: 163 EQ----APPSDKRAGEEVVKRR--KTSSAREESE---------------NPASGDEFFTL 201
E+ + S K+AG+ VV T SA +E + +S DE
Sbjct: 537 EEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAI-- 594
Query: 202 SPCLVTLNPGVKITKVA--AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
P LV G+K+ VA +G TL +++ GQVW WG G G+LG G TP LI
Sbjct: 595 -PMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGS-DGCKTPKLI 652
Query: 260 PCLEHAASGKDR------PLLVRQGSVNSSGK 285
L+ K R L + G V S GK
Sbjct: 653 EKLQDLDVIKVRCGSQFSIALTKDGQVYSWGK 684
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE 263
G K+ +A G H + ++ G+V+ WG EGQLG G+ + P L+ L+
Sbjct: 4250 GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT-TNAIQRPRLVAALQ 4301
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAA 111
CG G L ++ + +WG D Y G+ G P+ ++ VVK
Sbjct: 4152 CGSGDAQTLCLTDDDTVWSWGDGD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 4206
Query: 112 GWAHCVSVTEAGEVYTWG 129
G V++T++G VYTWG
Sbjct: 4207 GSQFSVALTKSGAVYTWG 4224
>sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase regulator homolog
OS=Caenorhabditis elegans GN=glo-4 PE=1 SV=1
Length = 1392
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 26/111 (23%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGK 269
PG + +A G H L+LS GQ+ WG GQ G+G ++ H G
Sbjct: 774 PGGRPRAIACGAEHILVLSSSGQLSAWGGNRFGQCGVGHSFRIANL--------HQVDG- 824
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
D P +++IACG HSA + G+L TFGWG++GQ
Sbjct: 825 DWP-----------------AIEKIACGQFHSAFICSDGSLWTFGWGVWGQ 858
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
K+T++A G HT++L+D G+V G G GQ+G+ IK V
Sbjct: 881 KVTQIACGRAHTVVLTDTGRVLVCGSGSYGQMGVDDDIKKV 921
>sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus
GN=Rpgr PE=1 SV=2
Length = 1001
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 25/108 (23%)
Query: 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRP 272
++ +VA GG HT++L++ V+ +G G GQLGLG+ + P +I + KD+
Sbjct: 244 RVIQVACGGGHTVVLTE-KVVYAFGLGQFGQLGLGTFLFETSEPKIIERI------KDQK 296
Query: 273 LLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ I+CG H+A++T+ G L TFG G +G+
Sbjct: 297 IC------------------HISCGENHTALMTELGLLYTFGDGRHGK 326
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 27/137 (19%)
Query: 204 CLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS--------RIKMVPT 255
C+ L P K+ A G HTL+ +D G V+ G EGQLGLG +I
Sbjct: 80 CIKALKPE-KVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTP 138
Query: 256 PHLIPCLE-----HAASGKDRPLLV----RQGSVNSSGKAGRSYVKE---------IACG 297
I L AA +D L + +G + K+ E I+CG
Sbjct: 139 ADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGKPISWISCG 198
Query: 298 GRHSAVVTDAGALLTFG 314
HSA VT G L TFG
Sbjct: 199 YYHSAFVTMDGELYTFG 215
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG 247
F T P ++ KI ++ G HT +++++G ++ +G G G+LGLG
Sbjct: 281 FETSEPKIIERIKDQKICHISCGENHTALMTELGLLYTFGDGRHGKLGLG 330
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 28/126 (22%)
Query: 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV-PTPHLIPCLEHAASGKDRPLLV 275
++ G HT I++ +++ +G GQLGLGS+ ++ PT C++ K
Sbjct: 40 LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKAAIIKPT-----CIKALKPEK------ 88
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGS 335
VK ACG H+ V TD G + G GQ + D
Sbjct: 89 ---------------VKLAACGRNHTLVSTDTGGVYAAGGNNEGQ-LGLGDTDDRDTFHQ 132
Query: 336 WVWVTP 341
V+ TP
Sbjct: 133 IVFFTP 138
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVK 108
D+ K + G A A +E GKL WG + EGQ L E +P E +V K
Sbjct: 139 ADTIKQLSAGANTSA-ALTEDGKLFMWGD-NSEGQIGL------EDKSNVCIPHEVTVGK 190
Query: 109 ----AAAGWAHCVSVTEAGEVYTWGWRE 132
+ G+ H VT GE+YT+G E
Sbjct: 191 PISWISCGYYHSAFVTMDGELYTFGEPE 218
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1
PE=1 SV=2
Length = 4861
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 39/218 (17%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPL----PTEASVVK-AAAG 112
G G LA + G++ +WG D Y G + + +P P + VV +AG
Sbjct: 465 GSDGHTLAFTTEGEVFSWGDGD-----YGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAG 519
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+ H +VTE GE+YTWG DFG G DS + +PT S+
Sbjct: 520 YRHSAAVTEDGELYTWG----------EGDFGRLG--HGDSNSRN--IPTLVKDISN--V 563
Query: 173 GEEVVKRRKTSSAREESENPAS-----------GDEFFTLSPCLVTLNPGVKITKVAAGG 221
GE T + ++ S GD P ++ G+ I KV AG
Sbjct: 564 GEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGS 623
Query: 222 RHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
+ +L L+ GQV+ WG G LG GS P LI
Sbjct: 624 QSSLALTSTGQVYAWGCG--ACLGCGSSEATALRPKLI 659
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 113/300 (37%), Gaps = 73/300 (24%)
Query: 33 PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHG 92
P +P S +CG + + G A G+L G++DD + S G
Sbjct: 4020 PAAAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRL-GQGNSDDLHVLTVISALQG 4078
Query: 93 ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKD 152
F + +V + H +++TE+GEV++WG D+G G D
Sbjct: 4079 -----FVV---TQLVTSCGSDGHSMALTESGEVFSWG----------DGDYGKLGHGNSD 4120
Query: 153 STGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLS---------- 202
+ + Q GEEVV + S + S S + FT
Sbjct: 4121 RQRRPRQIEALQ--------GEEVV---QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLG 4169
Query: 203 -------PCLVTLNPGVKITKVAAGGRHTLILS-DMGQVWGWGYGGEGQLGLGSRIKMVP 254
P VT G +I +VA G HTL +S D VW +G G G+LGLG+
Sbjct: 4170 NTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGN------ 4223
Query: 255 TPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFG 314
++ K P ++ G +K++ACG + S +T G + TFG
Sbjct: 4224 -----------STAKSSP-----QKIDVLCGIG---IKKVACGTQFSVALTKDGHVYTFG 4264
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 25/98 (25%)
Query: 223 HTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNS 282
H++ L++ G+V+ WG G G+LG G+ + + R + QG
Sbjct: 4093 HSMALTESGEVFSWGDGDYGKLGHGNSDR---------------QRRPRQIEALQGE--- 4134
Query: 283 SGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V +++CG +HSAVVT G L TFG G YG+
Sbjct: 4135 -------EVVQMSCGFKHSAVVTSDGKLFTFGNGDYGR 4165
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL 262
P + + GV I VA G HTL L+ G V+ WG EGQLGLG V P L+ L
Sbjct: 4282 PQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG-HTNHVREPTLVTGL 4340
Query: 263 E 263
+
Sbjct: 4341 Q 4341
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 27/118 (22%)
Query: 206 VTLNPGVKITKVAAG---GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL 262
+T P I KV++ HTL + G+V+ WG G G+LG G+
Sbjct: 449 LTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGN-------------- 494
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+S + P L+ QG + GK V ++ G RHSA VT+ G L T+G G +G+
Sbjct: 495 ---SSTQKYPKLI-QGPLQ--GKV----VVCVSAGYRHSAAVTEDGELYTWGEGDFGR 542
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 31 TSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90
+SP+K +L CG K CG F++A ++ G + T+G G L G+
Sbjct: 4228 SSPQKIDVL-------CGIGIKKVACG--TQFSVALTKDGHVYTFGQDRLIG---LPEGR 4275
Query: 91 HGETPEPFPLPTEASVV--KAAAGWAHCVSVTEAGEVYTWG 129
P +P A V+ A G H +++ G+VY WG
Sbjct: 4276 ARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWG 4316
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%)
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTP 256
E L P L+ +I V+ G H L LS +V+ WG GQ G G+ + P
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKP 709
Query: 257 HLIPCLE 263
+ L+
Sbjct: 710 KKVSGLD 716
>sp|Q8VE37|RCC1_MOUSE Regulator of chromosome condensation OS=Mus musculus GN=Rcc1 PE=1
SV=1
Length = 421
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 26/261 (9%)
Query: 66 TSESGKLITWGSAD----DEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
+E G ++T G D G+S L E +P +P VV+A AG H V +++
Sbjct: 31 NTEPGLVLTLGQGDVGQLGLGESVL------ERKKPALVPLLQDVVQAEAGGMHTVCLSQ 84
Query: 122 AGEVYTWGWRECVPSAKVTRDFGSAGS-FQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR 180
+G+VY++G C + RD GS Q + A S A E +
Sbjct: 85 SGQVYSFG---CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRVF 141
Query: 181 KTSSAREESENPASGDEFF-TLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYG 239
S R+ + + ++ P V L+ + KVA+G H ++L++ G ++ G G
Sbjct: 142 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLD--APVVKVASGNDHLVMLTNDGDLYTLGCG 199
Query: 240 GEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGR 299
+GQLG P L G R L+ R + S G GR ++ CG
Sbjct: 200 EQGQLG--------RVPELFAN-RGGRQGLGRLLVPRCVLLKSRGTRGRVRFQDAFCGAY 250
Query: 300 HSAVVTDAGALLTFGWGLYGQ 320
+ ++ G + FG Y Q
Sbjct: 251 FTFAISREGHVYGFGLSNYHQ 271
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G++ WGS D ++ P + +A VVK A+G H V +T G+
Sbjct: 133 ALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDAPVVKVASGNDHLVMLTNDGD 192
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 193 LYTLGCGEQGQLGRVPELFANRGGRQ 218
>sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1
Length = 520
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 211 GVKITKVAAG--GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASG 268
GV++ V +G H+L+++ G++W WG +GQLG G K V P LI L H A
Sbjct: 145 GVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGD-TKRVEAPRLIEALSHEA-- 201
Query: 269 KDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ ACG H+ +TD G++ FG GQ
Sbjct: 202 ----------------------IVLAACGRNHTLALTDTGSVFAFGENKMGQ 231
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 186 REESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLG 245
R E GD +P L+ I A G HTL L+D G V+ +G GQLG
Sbjct: 174 RNEKGQLGHGDTKRVEAPRLIEALSHEAIVLAACGRNHTLALTDTGSVFAFGENKMGQLG 233
Query: 246 LGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
LG++ VP+P + +G+ + ++ACG S ++
Sbjct: 234 LGNQTDAVPSP---------------------AQIMYNGQP----ITKMACGAEFSMLMD 268
Query: 306 DAGALLTFGWGLYGQ 320
G L +FG YGQ
Sbjct: 269 CKGNLYSFGCPEYGQ 283
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG-SRIKMVP 254
P V + VA G HTL+L +V+ WG+GG G+LG + +MVP
Sbjct: 326 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 371
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 94/269 (34%), Gaps = 59/269 (21%)
Query: 53 KDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
+ V G C +L + GKL +WG +++GQ K E P + ++V AA
Sbjct: 149 RTVVSGSCAAHSLLITTEGKLWSWGR-NEKGQLGHGDTKRVEAPRLIEALSHEAIVLAAC 207
Query: 112 GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR 171
G H +++T+ G V+ FG Q + A+P+ P
Sbjct: 208 GRNHTLALTDTGSVFA---------------FGENKMGQLGLGNQTDAVPS---PAQIMY 249
Query: 172 AGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMG 231
G+ + K A G EF L C G
Sbjct: 250 NGQPITKM-------------ACGAEFSMLMDC-------------------------KG 271
Query: 232 QVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYV 291
++ +G GQLG S K + I + + + + + V
Sbjct: 272 NLYSFGCPEYGQLGHNSDGKFIARAQRIE-YDCELVPRRVAIFIEKTKDGQILPVPNVVV 330
Query: 292 KEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++ACG H+ V+ + ++G+G YG+
Sbjct: 331 RDVACGANHTLVLDSQKRVFSWGFGGYGR 359
>sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2
Length = 522
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 211 GVKITKVAAG--GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEH---- 264
GV++ V +G H+L+++ G++W WG +GQLG G K V P LI L H
Sbjct: 147 GVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGD-TKRVEAPRLIEGLSHEVIV 205
Query: 265 -AASGKDRPL-LVRQGSV-----NSSGKAGRSY-----------------VKEIACGGRH 300
AA G++ L L GSV N G+ G + ++ACG
Sbjct: 206 SAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEF 265
Query: 301 SAVVTDAGALLTFGWGLYGQ 320
S ++ G L +FG YGQ
Sbjct: 266 SMIMDCKGNLYSFGCPEYGQ 285
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 96/269 (35%), Gaps = 59/269 (21%)
Query: 53 KDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA 111
+ V G C +L + GKL +WG +++GQ K E P + +V AA
Sbjct: 151 RTVVSGSCAAHSLLITTEGKLWSWGR-NEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAAC 209
Query: 112 GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKR 171
G H +++TE G V+ FG Q + A+P
Sbjct: 210 GRNHTLALTETGSVFA---------------FGENKMGQLGLGNQTDAVP---------- 244
Query: 172 AGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMG 231
SP + N G ITK+A G ++I+ G
Sbjct: 245 ------------------------------SPAQIMYN-GQPITKMACGAEFSMIMDCKG 273
Query: 232 QVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYV 291
++ +G GQLG S K + I + + + + + V
Sbjct: 274 NLYSFGCPEYGQLGHNSDGKFIARAQRIE-YDCELVPRRVAIFIEKTKDGQILPVPNVVV 332
Query: 292 KEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+++ACG H+ V+ + ++G+G YG+
Sbjct: 333 RDVACGANHTLVLDSQKRVFSWGFGGYGR 361
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLG-SRIKMVP 254
P V + VA G HTL+L +V+ WG+GG G+LG + +MVP
Sbjct: 328 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVP 373
>sp|P23800|RCC1_MESAU Regulator of chromosome condensation OS=Mesocricetus auratus
GN=RCC1 PE=1 SV=1
Length = 421
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 26/260 (10%)
Query: 67 SESGKLITWGSAD----DEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
+E G ++T G D G+S L E +P +P VV+A AG H V + ++
Sbjct: 32 TEPGLVLTLGQGDVGQLGLGESVL------ERKKPALVPLLQDVVQAEAGGMHTVCLNQS 85
Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGS-FQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRK 181
G+VY++G C + RD GS Q + A S A E +
Sbjct: 86 GQVYSFG---CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTEDGRVFL 142
Query: 182 TSSAREESENPASGDEFF-TLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGG 240
S R+ + + ++ P V L+ + + KVA+G H ++L+ G ++ G G
Sbjct: 143 WGSFRDNNGVIGLLEPMKKSMVPVQVQLD--MPVVKVASGNDHLVMLTTDGDLYTLGCGE 200
Query: 241 EGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH 300
+GQLG P L G +R L+ + + S G GR ++ CG
Sbjct: 201 QGQLG--------RVPELFAN-RGGRQGLERLLVPKCVLLKSRGSRGRVRFQDAFCGAYL 251
Query: 301 SAVVTDAGALLTFGWGLYGQ 320
+ ++ G + FG Y Q
Sbjct: 252 TFAISREGHVYGFGLSNYHQ 271
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 133 ALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDMPVVKVASGNDHLVMLTTDGD 192
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 193 LYTLGCGEQGQLGRVPELFANRGGRQ 218
>sp|Q8SSY6|SPKUL_DICDI Bifunctional serine/threonine-protein kinase/NEDD4-like E3
ubiquitin-protein ligase OS=Dictyostelium discoideum
GN=DDB_G0276527 PE=3 SV=2
Length = 1887
Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 202 SPCLVTL---NPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS--RIKMVPTP 256
SP LV P +++ +A GG+H+L L+ G+V+ WG QLGLG+ P
Sbjct: 230 SPKLVEFFQTKPSLRVVSIANGGKHSLALTICGKVYSWGGNDSCQLGLGNGSSSSYYSLP 289
Query: 257 HLI----------------PCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRH 300
LI + + D S NSS + + +++CG
Sbjct: 290 QLINFNISYNNNNNNNNNNSTNNNNNNNNDGAQQQFSLSQNSSSNNNKIKIVKLSCGTNR 349
Query: 301 SAVVTDAGALLTFGWGLYGQ 320
SAV+TD G L TFG G +G+
Sbjct: 350 SAVITDKGLLFTFGRGDHGR 369
Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 25/117 (21%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR-IKMVPTPHLIPCLEHAASGKD 270
+KI K++ G + +++D G ++ +G G G+LGLG + + M TP L+ L
Sbjct: 338 IKIVKLSCGTNRSAVITDKGLLFTFGRGDHGRLGLGEQSLLMQSTPKLVQSL-------- 389
Query: 271 RPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLA 327
QG ++ +++ GG HS V+T+ G + +FG GQ C +
Sbjct: 390 ------QG----------HFIIDMSSGGGHSLVLTNKGLVFSFGRNDQGQLGIGCFS 430
Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 202 SPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPC 261
+P LV G I +++GG H+L+L++ G V+ +G +GQLG+G P I
Sbjct: 382 TPKLVQSLQGHFIIDMSSGGGHSLVLTNKGLVFSFGRNDQGQLGIGCFSNQQTIPKQIQW 441
Query: 262 LEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
+ + + +P+ + +++ GG HS ++D T+ WG
Sbjct: 442 FQTSQQQQQQPI----------------NIIKVSAGGYHSIAISDNND--TYAWG 478
Score = 37.0 bits (84), Expect = 0.22, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 26/115 (22%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
+ I KV+AGG H++ +SD + WG G LG ++ ++
Sbjct: 453 INIIKVSAGGYHSIAISDNNDTYAWGRSDYGVLGTSIDVQ---------------GDRNL 497
Query: 272 PLLVRQGSVNSSGKAGRSYVK--EIACGGRHSAVVTDAGALLTFGWGL-YGQRMA 323
P+L+ SV VK +++ G +H+ ++ G+L + WG GQR+
Sbjct: 498 PVLINSNSVVVDN------VKFIDVSSGFQHNVAMSIDGSL--YSWGCNAGQRLG 544
Score = 34.3 bits (77), Expect = 1.4, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRP 272
KI ++ G H+ ++D G ++ +G G G+LG G+ ++ +P L+ + S +
Sbjct: 189 KIVLISTGAIHSSFITDQGNLYTFGDGLLGKLGHGN-LESYSSPKLVEFFQTKPSLR--- 244
Query: 273 LLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
V IA GG+HS +T G + + WG
Sbjct: 245 ------------------VVSIANGGKHSLALTICGKV--YSWG 268
>sp|P28745|RCC1_SCHPO Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pim1 PE=1 SV=2
Length = 539
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 110/308 (35%), Gaps = 70/308 (22%)
Query: 38 ILSPIPARLCGGDSWKDVCGGGCGFAL--ATSESGKLITWGS--ADDEGQSYLTSGKHGE 93
+L P+++ G S V C L A +++G TWG+ D Y S K
Sbjct: 159 LLEGTPSKVEGALSHLRVTKVICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTA 218
Query: 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG----------------WRECVPSA 137
P LP + + A G H +++T G+VYTWG + P
Sbjct: 219 EPTQMRLP---EICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQP 275
Query: 138 KVTRDFGSAG-----SFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENP 192
++ S G SF D+ G+ A ++ G EV E+ E
Sbjct: 276 LALKNIISVGAGSYHSFAIDNKGRVYAWGLNIT----RQCGIEV----------EDEEEG 321
Query: 193 ASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM 252
A P LV G + + G HTL L + G+V WG QLG
Sbjct: 322 A-----VITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLG------- 369
Query: 253 VPTPHLIPCLEHAASGKD----RPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAG 308
+P L + G + P ++ G + V ++ CG H+ VT G
Sbjct: 370 IPDNALPETVVKDEKGNNYYLSTPTII----------PGLTNVIQVVCGTHHNLAVTSDG 419
Query: 309 ALLTFGWG 316
+ + WG
Sbjct: 420 KV--YSWG 425
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 51/233 (21%)
Query: 59 GCGFALATSESGKLITWGSADD--EGQSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAH 115
G +A + +GK+ TWG+ G+ L + G TP+P L +++ AG H
Sbjct: 234 GTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLAL---KNIISVGAGSYH 290
Query: 116 CVSVTEAGEVYTWGW---REC-----------VPSAKVTRDFGSAGSFQKDSTGKQSALP 161
++ G VY WG R+C V + D + + + G+ L
Sbjct: 291 SFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLA 350
Query: 162 T--------------EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVT 207
Q D E VVK K G+ ++ +P ++
Sbjct: 351 LLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEK-------------GNNYYLSTPTII- 396
Query: 208 LNPGV-KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLI 259
PG+ + +V G H L ++ G+V+ WG ++G G + V P L+
Sbjct: 397 --PGLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLV 447
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 28/168 (16%)
Query: 97 PFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGK 156
P + VV A G H +++ G VYTWG + ++T+D QKD G
Sbjct: 101 PILSTDKVGVVDLAVGGMHSAALSHDGRVYTWGVNDDYALGRLTKD-------QKDENGD 153
Query: 157 QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDE-------FFTLSPCLVTLN 209
+ + PS + R T ++ A D F S ++ +
Sbjct: 154 KVDNDLLEGTPSKVEGA--LSHLRVTKVICSDNLTAAITDNGCCFTWGTFRCSDGVLGYS 211
Query: 210 PGVK------------ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLG 245
K I ++A G H + L+ G+V+ WG G + QLG
Sbjct: 212 DSQKRTAEPTQMRLPEICQLATGTDHIIALTTTGKVYTWGNGQQFQLG 259
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET------------PEPFPLPTEAS 105
GG LA E G+++ WG DD Q + ET P +P +
Sbjct: 343 GGEHHTLALLEDGRVLAWGR-DDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTN 401
Query: 106 VVKAAAGWAHCVSVTEAGEVYTWGWRE 132
V++ G H ++VT G+VY+WG E
Sbjct: 402 VIQVVCGTHHNLAVTSDGKVYSWGSAE 428
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260
L+P L T GV +A GG H+ LS G+V+ WG + LG ++ +
Sbjct: 99 LNPILSTDKVGV--VDLAVGGMHSAALSHDGRVYTWGVNDDYALGRLTKDQK-------- 148
Query: 261 CLEHAASGKDRPLLVRQGSVNS-SGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318
+ D LL +G+ + G V ++ C +A +TD G F WG +
Sbjct: 149 --DENGDKVDNDLL--EGTPSKVEGALSHLRVTKVICSDNLTAAITDNGCC--FTWGTF 201
>sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1
Length = 495
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 31/139 (22%)
Query: 212 VKITKVAAG--GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEH----- 264
V+++ V +G H+LI++ G++W WG +GQLG G K + P LI L
Sbjct: 121 VQVSCVVSGPCAAHSLIITTEGKLWSWGRNDKGQLGHGD-TKRLEAPKLIEGLGEEVIVA 179
Query: 265 AASGKDRPL-LVRQGSV-----NSSGKAGRSY-----------------VKEIACGGRHS 301
AA G++ L L G+V N G+ G+ + ++ACG S
Sbjct: 180 AACGRNHTLALTENGTVYTFGENKLGQLGQGNQTDAVLSPATIQYNGQPIVKVACGAEFS 239
Query: 302 AVVTDAGALLTFGWGLYGQ 320
+V G L +FG YGQ
Sbjct: 240 MIVDCKGNLYSFGCPEYGQ 258
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 97/267 (36%), Gaps = 59/267 (22%)
Query: 55 VCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW 113
V G C +L + GKL +WG +D+GQ K E P+ E +V AA G
Sbjct: 126 VVSGPCAAHSLIITTEGKLWSWGR-NDKGQLGHGDTKRLEAPKLIEGLGEEVIVAAACGR 184
Query: 114 AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173
H +++TE G VYT+G G G G Q+ +P + + G
Sbjct: 185 NHTLALTENGTVYTFG----------ENKLGQLGQ------GNQTDAVL--SPATIQYNG 226
Query: 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQV 233
+ +VK VA G ++I+ G +
Sbjct: 227 QPIVK--------------------------------------VACGAEFSMIVDCKGNL 248
Query: 234 WGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKE 293
+ +G GQLG S K + I + + + + + ++
Sbjct: 249 YSFGCPEYGQLGHNSDGKFIARAQRIE-FDCELIPRRVAIFIEKTKDGQVLPVPNVVARD 307
Query: 294 IACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ACG H+ V+ + ++G+G YG+
Sbjct: 308 VACGANHTLVLDSQKRVFSWGFGGYGR 334
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 210 PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGK 269
P V VA G HTL+L +V+ WG+GG G+LG + K P L+ + G
Sbjct: 301 PNVVARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQ-KDEMVPRLVKLFDFPGRG- 358
Query: 270 DRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
+I CG + S +++ G L F WG+
Sbjct: 359 ---------------------ATQIYCGYQCSFALSEMGGL--FFWGV 383
>sp|P18754|RCC1_HUMAN Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1
SV=1
Length = 421
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 109/286 (38%), Gaps = 72/286 (25%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 58 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 109
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDST 154
P + + VV+ +AG +H ++T+ G V+ WG SF +D+
Sbjct: 110 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG------------------SF-RDNN 150
Query: 155 GKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKI 214
G L E +K+ ++ P V L+ V +
Sbjct: 151 GVIGLL--------------EPMKK--------------------SMVPVQVQLD--VPV 174
Query: 215 TKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLL 274
KVA+G H ++L+ G ++ G G +GQLG P L G +R L+
Sbjct: 175 VKVASGNDHLVMLTADGDLYTLGCGEQGQLG--------RVPELFAN-RGGRQGLERLLV 225
Query: 275 VRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+ + S G G ++ CG + ++ G + FG Y Q
Sbjct: 226 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 271
>sp|P0C5Y8|ALS2_RAT Alsin OS=Rattus norvegicus GN=Als2 PE=2 SV=1
Length = 1651
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 93/229 (40%), Gaps = 47/229 (20%)
Query: 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG---WR----ECVPSAKVT 140
+G TPE P +V++AA G H V +TE GEVY++G W+ E PS+ +
Sbjct: 25 AGSFSLTPERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWKSEAAEICPSSPLL 84
Query: 141 RDFGSAGSFQKDSTGK-QSALPTEQAPPS---DKRAGEEVVKRRKTSSAREESENPASGD 196
+TG S TE + AG+ V ++ S E S S
Sbjct: 85 ESALVGHHVVTVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVS--EPSPVSISDS 142
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTP 256
E SP L V+I ++A G HTL LS ++W WG G QLGL + V P
Sbjct: 143 E---TSPLL-----AVRILQLACGEEHTLALSISREIWAWGTG--CQLGLITTTFPVTKP 192
Query: 257 HLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
+ EH AGR V ++ACG HS +
Sbjct: 193 QKV---EHL--------------------AGR-VVLQVACGAFHSLALV 217
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254
GD L P V G ++ + AGG H+L L+ QV+ WG GQLG VP
Sbjct: 536 GDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEFPTTVP 595
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 65/173 (37%), Gaps = 43/173 (24%)
Query: 166 PPSDKRAGEEVVKR-----RKTSSAREESENPASGDE--------FFTLSPCLVTLNPGV 212
P S K EE VK+ +K+SS + E + G +SP L+ V
Sbjct: 437 PESLKDLREEQVKQESLQGKKSSSLMDIREEESEGGSRRLSLPGLLSQVSPRLLRKAARV 496
Query: 213 K-----ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAAS 267
K +T +G L+ S +VW WG G EGQLG G + P L P
Sbjct: 497 KTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVL-----PRLQPLCVKCLD 551
Query: 268 GKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
GK+ V + GG HS +T + ++G +GQ
Sbjct: 552 GKE--------------------VIHLEAGGSHSLALTAKSQVYSWGSNTFGQ 584
>sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1
Length = 1657
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 91/223 (40%), Gaps = 47/223 (21%)
Query: 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG---WR----ECVPSAKVTRDFGSA 146
TPE P +V++AA G H V +TE GEVY++G WR E PS+ + +
Sbjct: 31 TPERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSGPVEICPSSPILENALVG 90
Query: 147 GSFQKDSTGK-QSALPTEQAPPS---DKRAGEEVVKRRKTSSAREESENPASGDEFFTLS 202
+TG S T+ + AG+ V ++ NP S + S
Sbjct: 91 QYVVTVATGSFHSGAVTDNGVAYMWGENSAGQCAVANQQYVP----EPNPVSIADS-EAS 145
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL 262
P L V+I ++A G HTL LS ++W WG G QLGL + V P +
Sbjct: 146 PLL-----AVRILQLACGEEHTLALSISREIWAWGTG--CQLGLITTAFPVTKPQKV--- 195
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
EH AGR V ++ACG HS +
Sbjct: 196 EHL--------------------AGR-VVLQVACGAFHSLALV 217
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254
GD L P V G ++ + AGG H+L L+ QV+ WG GQLG VP
Sbjct: 542 GDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVP 601
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
V +T +G L+ S +VW WG G EGQLG G + P L P GK+
Sbjct: 507 VVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVL-----PRLQPLCVKCLDGKE- 560
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ----------- 320
V + GG HS +T + ++G +GQ
Sbjct: 561 -------------------VIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVP 601
Query: 321 RMAKCLAGDGI 331
R+AK + +G+
Sbjct: 602 RLAKISSENGV 612
>sp|P25183|RCC1_XENLA Regulator of chromosome condensation OS=Xenopus laevis GN=rcc1 PE=2
SV=1
Length = 424
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 17/230 (7%)
Query: 93 ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKD 152
E +P + +V+AAAG H V + +G +YT+G C + RD GS +
Sbjct: 62 ERKKPALVTLTEDIVQAAAGGMHTVCLGASGSIYTFG---CNDEGALGRDTSEEGSEMQ- 117
Query: 153 STGK-QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASG-DEFFTLSPCLVTLNP 210
GK + A Q D R N G E S V +
Sbjct: 118 -PGKVELAEKVVQVSAGDSHTAALTEDGRVFVFGSFRDNNGVIGLLEPMKKSMVPVQVQI 176
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKD 270
+ K+A+G H ++L+ G ++ G G +GQLG R+ T G +
Sbjct: 177 NTPVIKIASGNDHLVLLTVDGDLYTSGCGEQGQLG---RVPERFTN------RGGRKGLE 227
Query: 271 RPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
R LLV Q + +GR + +++ CG + V+ G + FG Y Q
Sbjct: 228 R-LLVPQCIHLKAKGSGRVHFQDVFCGAYFTFAVSQEGHVYGFGLSNYHQ 276
>sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=2
Length = 1657
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 91/223 (40%), Gaps = 47/223 (21%)
Query: 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG---WR----ECVPSAKVTRDFGSA 146
TPE P +V++AA G H V +TE GEVY++G WR E PS+ + +
Sbjct: 31 TPERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSGPVEICPSSPILENALVG 90
Query: 147 GSFQKDSTGK-QSALPTEQAPPS---DKRAGEEVVKRRKTSSAREESENPASGDEFFTLS 202
+TG S T+ + AG+ V ++ NP S + S
Sbjct: 91 QYVITVATGSFHSGAVTDNGVAYMWGENSAGQCAVANQQYVP----EPNPVSIADS-EAS 145
Query: 203 PCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL 262
P L V+I ++A G HTL LS ++W WG G QLGL + V P +
Sbjct: 146 PLL-----AVRILQLACGEEHTLALSISREIWAWGTG--CQLGLITTAFPVTKPQKV--- 195
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
EH AGR V ++ACG HS +
Sbjct: 196 EHL--------------------AGR-VVLQVACGAFHSLALV 217
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254
GD L P V G ++ + AGG H+L L+ QV+ WG GQLG VP
Sbjct: 542 GDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVP 601
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
V +T +G L+ S +VW WG G EGQLG G + P L P GK+
Sbjct: 507 VVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVL-----PRLQPLCVKCLDGKE- 560
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ----------- 320
V + GG HS +T + ++G +GQ
Sbjct: 561 -------------------VIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVP 601
Query: 321 RMAKCLAGDGI 331
R+AK + +G+
Sbjct: 602 RLAKISSENGV 612
>sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation OS=Caenorhabditis elegans
GN=ran-3 PE=4 SV=1
Length = 569
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 91/231 (39%), Gaps = 17/231 (7%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWGWRE--CVPSAKVTRDFGSAGSFQK----DSTGKQSAL 160
++A AG H +T GEVY G E VP+ V ++ GS F K + K+ +
Sbjct: 188 LQAVAGGVHSAVLTSEGEVYMCGINEKGTVPAEGVEKE-GSTDEFAKVKFEEDIEKEGKI 246
Query: 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTL--SPCLVTLNPGVKITKVA 218
A S A + + R + N + +P ++ KI K+A
Sbjct: 247 VMLAAGASFTAALTDQGSVIAWGNLRNSNGNVDVHPLLHKMQEAPVVIVHQAKRKIVKIA 306
Query: 219 AGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG 278
AG H ++L + G + +G G GQLG SR K + + ++ C E SG + +R
Sbjct: 307 AGENHLVMLDEKGCLLTFGDGEMGQLGRSSRTKTIRSKYM--CDE---SGDHLLVPLR-- 359
Query: 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGD 329
GK K + G + V + G FG Y Q K D
Sbjct: 360 -FKHKGKFFDVVAKNVFASGFWTIVHGEDGKYYAFGLNNYAQLGIKVDEAD 409
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 55 VCGGGCGFALATSESGKLITWGSA-DDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAA 111
+ G F A ++ G +I WG+ + G + H P + +A +VK AA
Sbjct: 248 MLAAGASFTAALTDQGSVIAWGNLRNSNGNVDVHPLLHKMQEAPVVIVHQAKRKIVKIAA 307
Query: 112 GWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161
G H V + E G + T+G E + +R + D +G +P
Sbjct: 308 GENHLVMLDEKGCLLTFGDGEMGQLGRSSRTKTIRSKYMCDESGDHLLVP 357
>sp|Q54X24|RCCDA_DICDI RCC1 domain-containing protein DDB_G0279253 OS=Dictyostelium
discoideum GN=DDB_G0279253 PE=4 SV=1
Length = 512
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 51/221 (23%)
Query: 100 LPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSA 159
+ +V + G H ++++ +VY WG + FG + ++
Sbjct: 227 FNNKIRIVSVSCGMRHSIALSSENDVYGWGCNK----------FGQLSNLIDGNS----- 271
Query: 160 LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219
+K ++ + +P D SP L+ +KI +++
Sbjct: 272 -----------------LKSNNNNNNINDIADPMVQD-----SPKLINFKNEIKIIQISC 309
Query: 220 GGRHTLILS-DMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG 278
G +HTL+L + V +G GQLG G+ I PC+ +S +
Sbjct: 310 GFQHTLLLDINFKNVLSFGQNKFGQLGNGNFIDQSN-----PCVIDISS------FILPT 358
Query: 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYG 319
S + S + +KEI CG +S ++T+ L G G YG
Sbjct: 359 STSKSLNDIK--IKEIQCGWSNSCLLTNQDKLYICGRGEYG 397
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 232 QVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYV 291
+++ WG G GQLG+G+ V TP L+ + GK V
Sbjct: 2 KIYSWGSGNLGQLGIGNTDDSVSTPTLV--------------------LPPDGKKDYEIV 41
Query: 292 KEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
+I GG HS ++ D G L TFG GQ
Sbjct: 42 NDIVGGGCHSMMIIDNGDLYTFGSNDSGQ 70
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 206 VTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGL---GSRIKMVPTPHLIPCL 262
+ N ++I V+ G RH++ LS V+GWG GQL G+ +K + I +
Sbjct: 225 ILFNNKIRIVSVSCGMRHSIALSSENDVYGWGCNKFGQLSNLIDGNSLKSNNNNNNINDI 284
Query: 263 EHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVV-TDAGALLTFGWGLYGQ 320
+D P L+ + +I+CG +H+ ++ + +L+FG +GQ
Sbjct: 285 ADPMV-QDSPKLIN--------FKNEIKIIQISCGFQHTLLLDINFKNVLSFGQNKFGQ 334
>sp|Q9CYF5|WBS16_MOUSE Williams-Beuren syndrome chromosomal region 16 protein homolog
OS=Mus musculus GN=Wbscr16 PE=2 SV=1
Length = 461
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 31/138 (22%)
Query: 213 KITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP------------ 260
++ +V G H+L L+D G+V+ G+G +GQ GLG + TP +
Sbjct: 228 QVVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLG-HYNITSTPSKLGGDLAGVTVVQVA 286
Query: 261 -----CLEHAASGK----DRPLLVRQGSVNSSGK---------AGRSYVKEIACGGRHSA 302
CL +A G ++ SV S + +G VK++ACGG A
Sbjct: 287 TYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGKVKQVACGGTGCA 346
Query: 303 VVTDAGALLTFGWGLYGQ 320
V+ G + +G+G+ G+
Sbjct: 347 VLNAEGHVFVWGYGILGK 364
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 46/166 (27%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILS---DMGQVWGWGYGGEGQLGL---------GS 248
+ P L KI+ A G TL+ S D+ +VWG G + QLG G
Sbjct: 93 IQPVPYRLELDHKISSAACGYGFTLLSSKTKDVTKVWGMGLNKDSQLGFHRSRKDKTRGY 152
Query: 249 RIKMVPTPHLIPC-------LEHAASGKDRPLLV--RQGSV----NSSGKAGRSYVK--- 292
+ P+P +P + + G+ L++ R+G NS G+ GR V+
Sbjct: 153 EYVLEPSPVPLPLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNSHGQCGRKVVEDEV 212
Query: 293 ------------------EIACGGRHSAVVTDAGALLTFGWGLYGQ 320
++ CG HS +TD G + + GWG GQ
Sbjct: 213 YSESHKVHRMQDFDGQVVQVVCGQDHSLFLTDKGEVYSCGWGADGQ 258
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 50/184 (27%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123
LA S G + WG+++ + +T P P V + A G C + G
Sbjct: 293 LALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGKVKQVACGGTGCAVLNAEG 352
Query: 124 EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTS 183
V+ WG+ G K ++A+P E PP+
Sbjct: 353 HVFVWGY----------------GILGKGPKLLETAIP-EMIPPT--------------- 380
Query: 184 SAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243
F L+ NP V+++++ G H L++ G+++ WG G
Sbjct: 381 --------------LFGLT----EFNPEVQVSQIRCGLSHFAALTNKGELFVWGKNIRGC 422
Query: 244 LGLG 247
LG+G
Sbjct: 423 LGIG 426
>sp|P21827|RCC1_YEAST Guanine nucleotide exchange factor SRM1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SRM1 PE=1 SV=1
Length = 482
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 59/257 (22%)
Query: 96 EPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTG 155
PF EA ++ A G H +++ E V++WG + G+ +D++
Sbjct: 76 NPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND-------------VGALGRDTSN 122
Query: 156 KQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKIT 215
+ L A S ++ + T + P L G K+
Sbjct: 123 AKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP--------------LAEGHKVV 168
Query: 216 KVAAGGRHTLILSDMGQVWGWGYG--GEGQLGL-GSRIKMVPTPHLIPCLE-----HAAS 267
++AA + L G+V+ WG EG LG +IK+ TP +P A
Sbjct: 169 QLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP 228
Query: 268 GKDRPLLVRQ---------GSVNSSGKA---------------GRSYVKEIACGGRHSAV 303
GKD L + + G N G+ G +VK IA G H
Sbjct: 229 GKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFA 288
Query: 304 VTDAGALLTFGWGLYGQ 320
+T L+++G +GQ
Sbjct: 289 LTKDNKLVSWGLNQFGQ 305
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 104/268 (38%), Gaps = 41/268 (15%)
Query: 65 ATSESGKLITWGSAD-DEGQ--SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
A +G++ WG+ +EG Y K +TP P ++ ++V+ A G H + + E
Sbjct: 179 ALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 238
Query: 122 AGEVYTWGW-------RECVPSAKVT----RDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170
G V+ WG R+ + ++ R FG + ++G+ A D
Sbjct: 239 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVKYIASGENHCF----ALTKDN 293
Query: 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDM 230
+ + + E+ E+ A P + L V I +AAG H+LILS
Sbjct: 294 KLVSWGLNQFGQCGVSEDVEDGA-----LVTKPKRLALPDNVVIRSIAAGEHHSLILSQD 348
Query: 231 GQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR--PLLVRQGSVNSSGKAGR 288
G ++ G ++G +P +L GK R PL + +V
Sbjct: 349 GDLYSCGRLDMFEVG-------IPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK------ 395
Query: 289 SYVKEIACGGRHSAVVTDAGALLTFGWG 316
K +A G HS V G ++G+G
Sbjct: 396 --FKSVAAGSHHSVAVAQNGIAYSWGFG 421
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 59/198 (29%)
Query: 59 GCGFALATSESGKLITWG---------SADDEGQSYLTSGKHGETPEPFPLPTEASVVKA 109
G A ++ KL++WG S D E + +T P+ LP +
Sbjct: 282 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTK------PKRLALPDNVVIRSI 335
Query: 110 AAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSD 169
AAG H + +++ G++Y+ G R + + +D ++ KD GK A+P
Sbjct: 336 AAGEHHSLILSQDGDLYSCG-RLDMFEVGIPKDNLPEYTY-KDVHGKARAVPLP------ 387
Query: 170 KRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD 229
LN K VAAG H++ ++
Sbjct: 388 ------------------------------------TKLNNVPKFKSVAAGSHHSVAVAQ 411
Query: 230 MGQVWGWGYGGEGQLGLG 247
G + WG+G +GLG
Sbjct: 412 NGIAYSWGFGETYAVGLG 429
>sp|Q920R0|ALS2_MOUSE Alsin OS=Mus musculus GN=Als2 PE=1 SV=3
Length = 1651
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 92/229 (40%), Gaps = 47/229 (20%)
Query: 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG---WR----ECVPSAKVT 140
+G TPE P +V++AA G H V +TE GEVY++G W+ E PS+ +
Sbjct: 25 AGSFSLTPERLPGWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPWKSESAEICPSSPLL 84
Query: 141 RDFGSAGSFQKDSTGK-QSALPTEQAPPS---DKRAGEEVVKRRKTSSAREESENPASGD 196
+TG S TE + AG+ V ++ E S S
Sbjct: 85 ESALVGHHVITVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQY--VPEPSPVSISDS 142
Query: 197 EFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTP 256
E SP L V+I ++A G HTL LS ++W WG G QLGL + V P
Sbjct: 143 E---TSPSL-----AVRILQLACGEEHTLALSLSREIWAWGTG--CQLGLITTTFPVTKP 192
Query: 257 HLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT 305
+ EH AGR V ++ACG HS +
Sbjct: 193 QKV---EHL--------------------AGR-VVLQVACGAFHSLALV 217
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254
GD L P V G ++ + AGG H+L L+ QV+ WG GQLG VP
Sbjct: 536 GDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEFPTTVP 595
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDR 271
V +T +G L+ S +VW WG G EGQLG G + P L P GK+
Sbjct: 501 VVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVL-----PRLQPLCVKCLDGKE- 554
Query: 272 PLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
V + GG HS +T + ++G +GQ
Sbjct: 555 -------------------VIHLEAGGSHSLALTAKSQVYSWGSNTFGQ 584
>sp|Q7ZZC8|NEK9_XENLA Serine/threonine-protein kinase Nek9 OS=Xenopus laevis GN=nek9 PE=2
SV=1
Length = 944
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 119/346 (34%), Gaps = 113/346 (32%)
Query: 22 VYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW----GS 77
VY+WG T+P+K + GG + VC G FA+ T E +L TW G
Sbjct: 331 VYVWGG-GKTTPQKLDVFK-------GGWRARQVCAGDAHFAVVTVEK-ELYTWVNMQGG 381
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEA--SVVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135
+ GQ L G +P + SV K + G V +T+ G++Y++G
Sbjct: 382 SKLHGQ--LGHGDRASYRQPKHVEKLQGKSVQKVSCGSDFTVCITDEGQLYSFG------ 433
Query: 136 SAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASG 195
+ +G G Q AG EV
Sbjct: 434 ----SDYYGCLGVNQS--------------------AGSEV------------------- 450
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPT 255
L P LV + +V+ G H + L+ V+ WG G G+LGL S V +
Sbjct: 451 -----LEPLLVDFFLNEPVDQVSCGDSHIMALTRSKSVYSWGCGEYGRLGLDSE-DDVYS 504
Query: 256 PHLIP-----CLEHAASGKD-RPLLVRQGSV-----NSSGKAGRSY-------------- 290
P + C+ + G D LL G V N K G +
Sbjct: 505 PQKVEVQRGLCIVNVCCGSDGSFLLTLTGKVLACGLNEHNKLGLNQYTAGIINHEAFQEV 564
Query: 291 ----------------VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
++ I+ G H+A + + G LLTFG GQ
Sbjct: 565 PYTTSLTLAKQLSFYKIRSISPGRTHTAAIDERGRLLTFGSNKCGQ 610
>sp|Q8TD19|NEK9_HUMAN Serine/threonine-protein kinase Nek9 OS=Homo sapiens GN=NEK9 PE=1
SV=2
Length = 979
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 120/345 (34%), Gaps = 111/345 (32%)
Query: 22 VYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW----GS 77
VY+WG T P+K ++ G S + VC G FA+ T E +L TW G
Sbjct: 349 VYVWGGGKST-PQKLDVIK-------SGCSARQVCAGNTHFAVVTVEK-ELYTWVNMQGG 399
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137
GQ P+ ++ + + G V VT+ G++Y +G
Sbjct: 400 TKLHGQLGHGDKASYRQPKHVEKLQGKAIRQVSCGDDFTVCVTDEGQLYAFG-------- 451
Query: 138 KVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDE 197
+ +G G DK AG EV++ + +
Sbjct: 452 --SDYYGCMGV--------------------DKVAGPEVLEPMQLN-------------- 475
Query: 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM----- 252
FF +P + +V+ G H ++L+ +V+ WG G G+LGL S
Sbjct: 476 FFLSNP----------VEQVSCGDNHVVVLTRNKEVYSWGCGEYGRLGLDSEEDYYTPQK 525
Query: 253 --VPTPHLIPCLEHAASGKDRPLLVRQGSV-----NSSGKAGRSY--------------- 290
VP +I ++ G LL + G V N K G +
Sbjct: 526 VDVPKALIIVAVQCGCDGTF--LLTQSGKVLACGLNEFNKLGLNQCMSGIINHEAYHEVP 583
Query: 291 ---------------VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
++ IA G H+A + + G LLTFG GQ
Sbjct: 584 YTTSFTLAKQLSFYKIRTIAPGKTHTAAIDERGRLLTFGCNKCGQ 628
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 98/281 (34%), Gaps = 62/281 (22%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAH 115
CG F + ++ G+L +GS D G + E EP L S V + + G H
Sbjct: 433 CGDDFTVCVTDEGQLYAFGS-DYYGCMGVDKVAGPEVLEPMQLNFFLSNPVEQVSCGDNH 491
Query: 116 CVSVTEAGEVYTWGWREC------------------VPSAK--VTRDFGSAGSFQKDSTG 155
V +T EVY+WG E VP A V G G+F +G
Sbjct: 492 VVVLTRNKEVYSWGCGEYGRLGLDSEEDYYTPQKVDVPKALIIVAVQCGCDGTFLLTQSG 551
Query: 156 KQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKIT 215
K A + +K + + A E S FTL+ L KI
Sbjct: 552 KVLACGLNEF---NKLGLNQCMSGIINHEAYHEVPYTTS----FTLAKQL----SFYKIR 600
Query: 216 KVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
+A G HT + + G++ +G GQLG+G+ K
Sbjct: 601 TIAPGKTHTAAIDERGRLLTFGCNKCGQLGVGNYKK------------------------ 636
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
R G G G V ++CG + TD + F WG
Sbjct: 637 RLGINLLGGPLGGKQVIRVSCGDEFTIAATDDNHI--FAWG 675
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPT--PH 257
G ++ +V+ G T+ +D ++ WG GG G R+ M PT PH
Sbjct: 649 GKQVIRVSCGDEFTIAATDDNHIFAWGNGGNG------RLAMTPTERPH 691
>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenorhabditis elegans
GN=rpm-1 PE=1 SV=1
Length = 3766
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 200 TLSPCLVTLNPG---VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI-KMVPT 255
TL P V L+ G VK++ V+ G HT++L+ +V+ +G GQLG+G + K P
Sbjct: 752 TLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQ 811
Query: 256 PHLIP---CLEHAASGKDRPLL-VRQGSVNSSGKAGR 288
++P + A+G + +L GSV + G G+
Sbjct: 812 QVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGK 848
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 195 GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLG 245
GD +P V L I +VAAG HT++ ++ G V+ +G G+GQL
Sbjct: 802 GDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLA 852
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 56 CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH 115
CG LA+ ++ T+GS + GQ + TP+ LP++ +V+ AAG H
Sbjct: 774 CGNFHTVLLASDR--RVFTFGS-NCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNH 830
Query: 116 CVSVTEAGEVYTWG 129
+ G V+T+G
Sbjct: 831 TILRANDGSVFTFG 844
>sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide exchange factor OS=Homo
sapiens GN=SERGEF PE=1 SV=2
Length = 458
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 56/325 (17%)
Query: 28 LPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87
+P +P KS PI CG D F + +E+G++++ GS + GQ +
Sbjct: 89 IPYFTPCKSLFGCPIQQVACGWD-----------FTIMLTENGQVLSCGS-NSFGQLGVP 136
Query: 88 SG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW------RECVPSAKVT 140
G + P+ L E VV AAG H V+ T +G V+ WG R P +
Sbjct: 137 HGPRRCVVPQAIELHKE-KVVCIAAGLRHAVAATASGIVFQWGTGLASCGRRLCPGQTLP 195
Query: 141 RDFGSAGSFQ---KDSTGKQSALPTEQAPPSDKRAGEEVV--KRRKTSSAREESENPASG 195
F + + +++ L S AGE V + A E + P
Sbjct: 196 LFFTAKEPSRVTGLENSKAMCVLAGSDHSASLTDAGEVYVWGSNKHGQLANEAAFLPVPQ 255
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI----K 251
+ C K+T + +G H + ++ G+++ WG GQLG K
Sbjct: 256 K---IEAHCF----QNEKVTAIWSGWTHLVAQTETGKMFTWGRADYGQLGRKLETYEGWK 308
Query: 252 MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALL 311
+ +PC S P + + E++CG H+ + G
Sbjct: 309 LEKQDSFLPCSRPPNSMPSSPHCLTGAT-------------EVSCGSEHNLAII-GGVCY 354
Query: 312 TFGWGLYGQRMAKCLAGDGINMGSW 336
++GW +G + GDG W
Sbjct: 355 SWGWNEHG------MCGDGTEANVW 373
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 33/134 (24%)
Query: 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPC-------LEHAA 266
+ ++ GG H+ +++D G ++ G +GQLGLG + P+ PC ++ A
Sbjct: 51 VRRITGGGGHSAVVTDGGDLFVCGLNKDGQLGLGHTEDI---PYFTPCKSLFGCPIQQVA 107
Query: 267 SGKDRP-LLVRQGSV-----NSSGKAG-----------------RSYVKEIACGGRHSAV 303
G D +L G V NS G+ G + V IA G RH+
Sbjct: 108 CGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQAIELHKEKVVCIAAGLRHAVA 167
Query: 304 VTDAGALLTFGWGL 317
T +G + +G GL
Sbjct: 168 ATASGIVFQWGTGL 181
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 27/133 (20%)
Query: 22 VYMWGYLPGTSPEKSPILSPIPARL---CGGDSWKDVCGGGCGFALATSESGKLITWGSA 78
VY+WG P+P ++ C + G +A +E+GK+ TWG A
Sbjct: 233 VYVWGSNKHGQLANEAAFLPVPQKIEAHCFQNEKVTAIWSGWTHLVAQTETGKMFTWGRA 292
Query: 79 DDEGQSYLTSGKHGETPEPFPLPTEASVV------KAAAGWAHCVS-VTEA--------- 122
D Y G+ ET E + L + S + + HC++ TE
Sbjct: 293 D-----YGQLGRKLETYEGWKLEKQDSFLPCSRPPNSMPSSPHCLTGATEVSCGSEHNLA 347
Query: 123 ---GEVYTWGWRE 132
G Y+WGW E
Sbjct: 348 IIGGVCYSWGWNE 360
>sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos
taurus GN=SERGEF PE=2 SV=1
Length = 464
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR---IKMVPTPHLIPC-LEHAASGK 269
I ++ GG H+ +++D G ++ G +GQLGLG + P L+ C ++ A G
Sbjct: 51 IKRITGGGGHSAVVTDEGSLFVCGLNKDGQLGLGHTEEVLYFTPCKSLLGCAIQQVACGW 110
Query: 270 DRP-LLVRQGSV-----NSSGKAG-----------------RSYVKEIACGGRHSAVVTD 306
D +L G V NS G+ G R V IA G RH+ T
Sbjct: 111 DFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVIPQAIELLREKVVSIAAGLRHALAATA 170
Query: 307 AGALLTFGWGLY--GQRM 322
+G + +G GL G+R+
Sbjct: 171 SGTVFQWGTGLASSGRRL 188
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 36/163 (22%)
Query: 196 DEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGL--GSRIKMV 253
+E +PC L G I +VA G T+IL++ GQV G GQLG+ G R ++
Sbjct: 87 EEVLYFTPCKSLL--GCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVI 144
Query: 254 PTP---------HLIPCLEHAAS-----------------------GKDRPLLVRQGSVN 281
P + L HA + G+ PL + +
Sbjct: 145 PQAIELLREKVVSIAAGLRHALAATASGTVFQWGTGLASSGRRLCPGQTLPLFLTAKEPS 204
Query: 282 SSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAK 324
+ S + G HSA +TDAG L +G +GQ ++
Sbjct: 205 TVTGLENSQAVCVLAGSDHSASLTDAGELYVWGSNKHGQLASQ 247
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 24/88 (27%)
Query: 233 VWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
++ WG GQLGLG + E S + + G +K
Sbjct: 17 LFAWGANSYGQLGLGHK-------------EDVLSAQQLSDFCKSGC-----------IK 52
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQ 320
I GG HSAVVTD G+L G GQ
Sbjct: 53 RITGGGGHSAVVTDEGSLFVCGLNKDGQ 80
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 120/353 (33%), Gaps = 101/353 (28%)
Query: 19 ETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78
E V+Y +P KS + I CG D F + +E+G++++ GS
Sbjct: 87 EEVLYF-------TPCKSLLGCAIQQVACGWD-----------FTIILTENGQVLSCGS- 127
Query: 79 DDEGQSYLTSG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137
+ GQ + G + P+ L E VV AAG H ++ T +G V+ WG
Sbjct: 128 NSFGQLGVPHGPRRCVIPQAIELLRE-KVVSIAAGLRHALAATASGTVFQWG-------- 178
Query: 138 KVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDE 197
G A S ++ G+ L PS E + + + +G+
Sbjct: 179 -----TGLASSGRRLCPGQTLPLFLTAKEPSTVTGLENSQAVCVLAGSDHSASLTDAGEL 233
Query: 198 F---------------FTLSPCLVTLN--PGVKITKVAAGGRHTLILSDMGQVWGWGYGG 240
+ F L P + KI V +G H + + G+V+ WG
Sbjct: 234 YVWGSNKHGQLASQAAFLLLPQRIEARCFQNEKIAAVWSGWTHLVAQTVTGKVFTWGRAD 293
Query: 241 EGQLGLGSRIK----------MVP-------TPHLIPCLEHAASGKDRPLLVRQGSVNSS 283
GQLG + +P TP +PCL A
Sbjct: 294 YGQLGRTVETREGWESEKQDPSLPGSGPQKGTPSCLPCLTGAT----------------- 336
Query: 284 GKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSW 336
EI+CG H+ V G ++GW +G + GDG W
Sbjct: 337 ---------EISCGSEHNLAVI-GGVCHSWGWNEHG------MCGDGTEADVW 373
>sp|P52499|RCC1_CANAX Protein RCC1 OS=Candida albicans GN=RCC1 PE=3 SV=1
Length = 464
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 81/229 (35%), Gaps = 57/229 (24%)
Query: 64 LATSESGKLITWGSADDEGQSYLTSGKHGET--------PEPFPLPTEASVVKAAAGWAH 115
A S + WG + GQ LT G +GE P P + + + AAG H
Sbjct: 264 FAIDHSHNVYAWG-LNQYGQCALT-GDNGELEDGSVLMKPTLIPELSHKGIKEIAAGEHH 321
Query: 116 CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE 175
+++TE G+VY WG + K+ +P ++ P S +
Sbjct: 322 TLALTEDGQVYAWGRYDM----------------------KEIGIPKDKLPKSTFKI--- 356
Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWG 235
N + F L VKI + G H+ +++ G V+
Sbjct: 357 ---------------NTGTHGSFSFLQNLF-----AVKIKTIGVGSHHSFAVTEDGVVYA 396
Query: 236 WGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSG 284
WG+ GLG I V P I + A +D L+ G + SG
Sbjct: 397 WGFAETYGPGLGPSIDDVEKPTRI--VNTATKNEDILLIGAGGQFSVSG 443
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 201 LSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIP 260
+ P L+ I ++AAG HTL L++ GQV+ WG ++G +P L
Sbjct: 299 MKPTLIPELSHKGIKEIAAGEHHTLALTEDGQVYAWGRYDMKEIG-------IPKDKLPK 351
Query: 261 CLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317
+G GS + +K I G HS VT+ G + + WG
Sbjct: 352 STFKINTGT-------HGSFSFLQNLFAVKIKTIGVGSHHSFAVTEDG--VVYAWGF 399
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWG 237
G KI A GG HTL L ++W WG
Sbjct: 64 GTKIVDFAVGGMHTLALDGKNRIWSWG 90
>sp|Q8K1R7|NEK9_MOUSE Serine/threonine-protein kinase Nek9 OS=Mus musculus GN=Nek9 PE=1
SV=2
Length = 984
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 122/346 (35%), Gaps = 113/346 (32%)
Query: 22 VYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW----GS 77
VY+WG T P+K ++ G S + VC G FA+ T E +L TW G
Sbjct: 349 VYVWGGGKST-PQKLDVIK-------SGCSARQVCAGNTHFAVVTVEK-ELYTWVNMQGG 399
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137
GQ P+ ++ + + G V VT+ G++Y +G
Sbjct: 400 TKLHGQLGHGDKASYRQPKHVEKLQGKAIHQVSCGDDFTVCVTDEGQLYAFG-------- 451
Query: 138 KVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDE 197
+ +G G DK +G EV++ + +
Sbjct: 452 --SDYYGCMGV--------------------DKVSGPEVLEPMQLN-------------- 475
Query: 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS--------R 249
FF +P + +V+ G H ++L+ +V+ WG G G+LGL S R
Sbjct: 476 FFLSNP----------VEQVSCGDNHVVVLTRNKEVYSWGCGEYGRLGLDSEEDYYTPQR 525
Query: 250 IKMVPTPHLIPCLEHAASGKDRPLLVRQGSV-----NSSGKAGRSY-------------- 290
+ VP +I ++ G LL + G V N K G +
Sbjct: 526 VD-VPKALIIVAVQCGCDGTF--LLTQSGKVLACGLNEFNKLGLNQCMSGIINHEAYHEV 582
Query: 291 ----------------VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
++ IA G H+A + + G LLTFG GQ
Sbjct: 583 PYTTSFTLAKQLSFYKIRTIAPGKTHTAAIDERGRLLTFGCNKCGQ 628
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 98/281 (34%), Gaps = 62/281 (22%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS--VVKAAAGWAH 115
CG F + ++ G+L +GS D G + E EP L S V + + G H
Sbjct: 433 CGDDFTVCVTDEGQLYAFGS-DYYGCMGVDKVSGPEVLEPMQLNFFLSNPVEQVSCGDNH 491
Query: 116 CVSVTEAGEVYTWG------------------WRECVPSAK--VTRDFGSAGSFQKDSTG 155
V +T EVY+WG R VP A V G G+F +G
Sbjct: 492 VVVLTRNKEVYSWGCGEYGRLGLDSEEDYYTPQRVDVPKALIIVAVQCGCDGTFLLTQSG 551
Query: 156 KQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKIT 215
K A + +K + + A E S FTL+ L KI
Sbjct: 552 KVLACGLNEF---NKLGLNQCMSGIINHEAYHEVPYTTS----FTLAKQL----SFYKIR 600
Query: 216 KVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLV 275
+A G HT + + G++ +G GQLG+G+ K
Sbjct: 601 TIAPGKTHTAAIDERGRLLTFGCNKCGQLGVGNYKK------------------------ 636
Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWG 316
R G G G V ++CG + TD + F WG
Sbjct: 637 RLGINLLGGPLGGKQVIRVSCGDEFTIAATDDNHI--FAWG 675
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPT--PH 257
G ++ +V+ G T+ +D ++ WG GG G R+ M PT PH
Sbjct: 649 GKQVIRVSCGDEFTIAATDDNHIFAWGNGGNG------RLAMTPTERPH 691
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,215,383
Number of Sequences: 539616
Number of extensions: 6651039
Number of successful extensions: 12048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11204
Number of HSP's gapped (non-prelim): 576
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)