Query 019441
Match_columns 341
No_of_seqs 132 out of 1591
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.1E-35 2.3E-40 273.6 19.3 236 7-323 182-426 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.1E-35 2.4E-40 273.5 18.9 239 7-327 110-378 (476)
3 KOG1427 Uncharacterized conser 100.0 3.6E-34 7.7E-39 248.5 15.8 229 17-327 17-266 (443)
4 KOG1427 Uncharacterized conser 100.0 5.9E-34 1.3E-38 247.1 13.5 246 6-318 63-311 (443)
5 KOG1428 Inhibitor of type V ad 99.9 1.3E-24 2.8E-29 216.9 18.9 283 9-327 525-857 (3738)
6 KOG0783 Uncharacterized conser 99.9 1.2E-24 2.7E-29 209.9 12.9 223 14-317 136-363 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.8E-24 3.9E-29 208.7 8.1 183 64-326 136-320 (1267)
8 KOG1428 Inhibitor of type V ad 99.7 3.5E-17 7.7E-22 164.5 14.8 106 102-263 765-872 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 2.4E-12 5.2E-17 85.9 4.5 51 230-304 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 4.8E-12 1E-16 84.4 2.4 50 69-119 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 1.8E-11 3.9E-16 71.7 4.1 30 214-243 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.2 2E-11 4.3E-16 71.5 4.2 30 291-320 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 2.2E-12 4.8E-17 126.7 -6.7 145 94-319 4-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 3E-11 6.4E-16 118.9 -6.2 145 40-242 4-156 (850)
15 KOG3669 Uncharacterized conser 93.6 6.7 0.00015 38.7 16.7 100 62-235 194-298 (705)
16 KOG3669 Uncharacterized conser 91.5 2.6 5.6E-05 41.5 11.1 70 213-313 228-299 (705)
17 PF11725 AvrE: Pathogenicity f 85.6 5.6 0.00012 44.1 9.8 71 212-308 744-815 (1774)
18 KOG0943 Predicted ubiquitin-pr 84.6 0.096 2.1E-06 55.0 -3.4 134 102-318 372-507 (3015)
19 PF07569 Hira: TUP1-like enhan 83.9 6.5 0.00014 34.3 8.2 29 212-240 13-41 (219)
20 KOG1408 WD40 repeat protein [F 76.6 81 0.0018 32.5 13.5 64 8-78 78-156 (1080)
21 PF07569 Hira: TUP1-like enhan 76.1 13 0.00029 32.4 7.5 72 49-130 12-94 (219)
22 smart00706 TECPR Beta propelle 72.9 8.7 0.00019 22.6 3.9 25 104-128 8-33 (35)
23 PRK05560 DNA gyrase subunit A; 71.4 1.4E+02 0.0031 31.6 16.8 81 47-129 534-620 (805)
24 smart00706 TECPR Beta propelle 70.8 11 0.00024 22.1 4.0 25 289-313 8-33 (35)
25 TIGR01063 gyrA DNA gyrase, A s 68.5 1.7E+02 0.0036 31.1 17.9 82 46-129 531-618 (800)
26 PRK13979 DNA topoisomerase IV 61.2 2.4E+02 0.0053 30.5 18.0 81 47-129 549-637 (957)
27 KOG0943 Predicted ubiquitin-pr 58.9 14 0.00031 39.9 4.6 79 211-313 373-453 (3015)
28 PF12341 DUF3639: Protein of u 54.7 37 0.00079 19.0 3.8 24 104-127 2-25 (27)
29 PF11725 AvrE: Pathogenicity f 53.1 24 0.00053 39.4 5.4 80 41-123 734-815 (1774)
30 TIGR01062 parC_Gneg DNA topois 52.0 2.4E+02 0.0051 29.6 12.1 84 42-129 517-603 (735)
31 KOG1274 WD40 repeat protein [G 46.4 3.9E+02 0.0084 28.4 14.8 66 62-131 17-86 (933)
32 KOG1900 Nuclear pore complex, 45.8 4.6E+02 0.0099 29.2 13.1 69 10-83 89-162 (1311)
33 KOG0293 WD40 repeat-containing 45.8 2.3E+02 0.005 27.3 9.8 28 213-240 442-471 (519)
34 PF06739 SBBP: Beta-propeller 45.5 25 0.00054 21.3 2.5 19 222-240 15-33 (38)
35 KOG4693 Uncharacterized conser 43.9 73 0.0016 28.8 6.0 18 113-131 183-200 (392)
36 KOG0315 G-protein beta subunit 42.5 2.5E+02 0.0055 25.2 12.7 22 219-240 134-155 (311)
37 TIGR01062 parC_Gneg DNA topois 41.9 4.4E+02 0.0094 27.7 16.2 61 59-132 493-555 (735)
38 PF13418 Kelch_4: Galactose ox 41.7 26 0.00056 22.0 2.3 18 113-130 3-20 (49)
39 COG4257 Vgb Streptogramin lyas 39.8 1E+02 0.0023 28.0 6.4 103 9-131 62-167 (353)
40 KOG1034 Transcriptional repres 38.0 98 0.0021 28.7 6.0 56 17-77 326-382 (385)
41 COG4257 Vgb Streptogramin lyas 36.8 87 0.0019 28.5 5.4 97 12-128 107-205 (353)
42 KOG0646 WD40 repeat protein [G 36.0 4.2E+02 0.0091 25.8 13.8 93 17-130 100-196 (476)
43 PRK05560 DNA gyrase subunit A; 35.3 5.7E+02 0.012 27.2 12.3 67 59-131 497-566 (805)
44 KOG1034 Transcriptional repres 35.0 1E+02 0.0022 28.7 5.6 38 201-238 343-382 (385)
45 PF03785 Peptidase_C25_C: Pept 33.4 68 0.0015 23.2 3.5 31 104-134 16-47 (81)
46 TIGR03300 assembly_YfgL outer 32.4 3.5E+02 0.0075 25.2 9.4 15 222-236 362-376 (377)
47 TIGR03548 mutarot_permut cycli 30.7 1.1E+02 0.0023 28.2 5.4 15 64-78 166-180 (323)
48 KOG2444 WD40 repeat protein [G 28.5 1.4E+02 0.0031 26.3 5.3 61 59-130 69-131 (238)
49 PF03785 Peptidase_C25_C: Pept 28.3 96 0.0021 22.4 3.5 40 43-84 9-49 (81)
50 PF01436 NHL: NHL repeat; Int 27.7 1.1E+02 0.0024 16.8 3.1 18 300-317 5-22 (28)
51 PF11399 DUF3192: Protein of u 27.5 44 0.00096 25.3 1.8 23 298-320 79-101 (102)
52 KOG4441 Proteins containing BT 26.2 5E+02 0.011 26.3 9.6 194 19-314 332-529 (571)
53 PF07250 Glyoxal_oxid_N: Glyox 25.0 2.6E+02 0.0056 24.9 6.5 20 221-240 119-138 (243)
54 COG5308 NUP170 Nuclear pore co 24.1 1.7E+02 0.0037 31.2 5.6 101 13-132 95-202 (1263)
55 TIGR01063 gyrA DNA gyrase, A s 24.1 8.9E+02 0.019 25.7 12.2 61 61-129 497-562 (800)
56 PF07250 Glyoxal_oxid_N: Glyox 23.5 4.3E+02 0.0094 23.5 7.6 70 55-132 114-190 (243)
57 PF02239 Cytochrom_D1: Cytochr 23.4 6.3E+02 0.014 23.8 13.2 68 48-129 25-95 (369)
58 KOG0316 Conserved WD40 repeat- 23.1 5.5E+02 0.012 23.0 10.9 89 18-129 79-171 (307)
59 PLN03215 ascorbic acid mannose 23.0 3.2E+02 0.0068 26.1 7.0 26 212-237 200-225 (373)
60 KOG2444 WD40 repeat protein [G 22.5 1.8E+02 0.0039 25.6 4.8 30 217-246 66-95 (238)
61 KOG0318 WD40 repeat stress pro 21.4 5.1E+02 0.011 25.8 8.0 15 70-84 129-143 (603)
62 KOG0278 Serine/threonine kinas 20.7 6.3E+02 0.014 22.8 8.3 20 112-131 268-287 (334)
63 PF13854 Kelch_5: Kelch motif 20.6 1.1E+02 0.0024 18.6 2.4 18 113-131 6-23 (42)
64 KOG0649 WD40 repeat protein [G 20.4 5.5E+02 0.012 23.1 7.3 29 48-78 61-89 (325)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=273.63 Aligned_cols=236 Identities=25% Similarity=0.411 Sum_probs=194.1
Q ss_pred chhhhccccccCcccEEEeccC-CCCCCCC--C----CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCC
Q 019441 7 KREENEKMEECKETVVYMWGYL-PGTSPEK--S----PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79 (341)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~--~----~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~ 79 (341)
.|.+...++++++|.||.||.. .+.++.. + -..+++|+.++ ...|+++++ |..|.++|+++|++|+||++
T Consensus 182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs~- 258 (476)
T COG5184 182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGSN- 258 (476)
T ss_pred ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecCC-
Confidence 5888999999999999999996 4443332 2 22346777777 578999999 77899999999999999999
Q ss_pred CCCCCcccCCCCCCCCeecCCCCC-CcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCC
Q 019441 80 DEGQSYLTSGKHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS 158 (341)
Q Consensus 80 ~~GqlG~~~~~~~~~p~~i~~~~~-~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~ 158 (341)
..||||....+....+.++..+.. ..|+.|+||.+|+++|+++|++|+||.|.+||||.. ++.
T Consensus 259 qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~--------------- 322 (476)
T COG5184 259 QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDG--------------- 322 (476)
T ss_pred cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-ccc---------------
Confidence 999999988777666666654443 447999999999999999999999999999999965 220
Q ss_pred CCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeC
Q 019441 159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGY 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~ 238 (341)
......+.|.....+.+..|.+|+++..|+++|..+|.||+||+
T Consensus 323 ------------------------------------~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 323 ------------------------------------EIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred ------------------------------------ccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 11123566777777777789999999999999999999999999
Q ss_pred CCCCccCCCCCC-CccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCC
Q 019441 239 GGEGQLGLGSRI-KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317 (341)
Q Consensus 239 n~~GqLG~~~~~-~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~ 317 (341)
+..+|||...+. ..++.|..+... ..+.+|+||..|+++.+.+|+||.||+++
T Consensus 367 ~~~~qlg~~~~~~~~~~~~~~ls~~--------------------------~~~~~v~~gt~~~~~~t~~gsvy~wG~ge 420 (476)
T COG5184 367 GDRGQLGIQEEITIDVSTPTKLSVA--------------------------IKLEQVACGTHHNIARTDDGSVYSWGWGE 420 (476)
T ss_pred CccccccCcccceeecCCccccccc--------------------------cceEEEEecCccceeeccCCceEEecCch
Confidence 999999998842 445566665533 56999999999999999999999999999
Q ss_pred CCCCCc
Q 019441 318 YGQRMA 323 (341)
Q Consensus 318 ~GQLG~ 323 (341)
+||||.
T Consensus 421 ~gnlG~ 426 (476)
T COG5184 421 HGNLGN 426 (476)
T ss_pred hhhccC
Confidence 999964
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=273.47 Aligned_cols=239 Identities=24% Similarity=0.369 Sum_probs=183.4
Q ss_pred chhhhccccccCcccEEEeccC-CCCCCCCCC------------------CCCCceeeccC----CCceeEEEecCCcee
Q 019441 7 KREENEKMEECKETVVYMWGYL-PGTSPEKSP------------------ILSPIPARLCG----GDSWKDVCGGGCGFA 63 (341)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~------------------~~~p~~~~~~~----~~~i~~i~~~g~~h~ 63 (341)
+|--|++.+|+++|.||.||.| +|+++.... ...|..++... -.+|+++.| |++++
T Consensus 110 acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c-g~e~s 188 (476)
T COG5184 110 ACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC-GWEIS 188 (476)
T ss_pred ecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec-CCceE
Confidence 3445799999999999999999 899887661 33454444411 348999999 88999
Q ss_pred EEEeCCCCEEEecCCCCCCCCcccCCCCC----CCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCc
Q 019441 64 LATSESGKLITWGSADDEGQSYLTSGKHG----ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKV 139 (341)
Q Consensus 64 ~~lt~~G~vy~wG~n~~~GqlG~~~~~~~----~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~ 139 (341)
++|+++|+||+||.. ..+.++.+..... ..+.|+.++ +..|+++++|.+|.++|+.+|+||.||++..||||+.
T Consensus 189 vil~~~G~V~~~gt~-r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~ 266 (476)
T COG5184 189 VILTADGRVYSWGTF-RCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRP 266 (476)
T ss_pred EEEccCCcEEEecCc-cccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCc
Confidence 999999999999998 7777766533332 335666666 5789999999999999999999999999999999975
Q ss_pred cccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEc
Q 019441 140 TRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219 (341)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~ 219 (341)
... +. ......|.++.. ..|+.|+|
T Consensus 267 ~~e------------------------------------~~----------------~~~~lv~~~f~i---~~i~~vac 291 (476)
T COG5184 267 TSE------------------------------------RL----------------KLVVLVGDPFAI---RNIKYVAC 291 (476)
T ss_pred hhh------------------------------------hc----------------ccccccCChhhh---hhhhhccc
Confidence 421 00 001122322222 14889999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCccCCCCCCC---ccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEee
Q 019441 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIK---MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIAC 296 (341)
Q Consensus 220 G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~---~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~ 296 (341)
|.+|++||+++|++|+||.|.|||||.++..+ ....|.....+.. ..|..|++
T Consensus 292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~------------------------~~i~~is~ 347 (476)
T COG5184 292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG------------------------VTICSISA 347 (476)
T ss_pred CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCC------------------------ceEEEEec
Confidence 99999999999999999999999999983211 1123333333332 67999999
Q ss_pred CCCeEEEEeCCCCEEEeeCCCCCCCCccccC
Q 019441 297 GGRHSAVVTDAGALLTFGWGLYGQRMAKCLA 327 (341)
Q Consensus 297 G~~hs~~lt~~G~v~~wG~n~~GQLG~~~~~ 327 (341)
|..|+++|..+|.||+||++++||||+.++.
T Consensus 348 ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~ 378 (476)
T COG5184 348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEI 378 (476)
T ss_pred CcceEEEEecCceEEEecCCccccccCcccc
Confidence 9999999999999999999999999997744
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=248.46 Aligned_cols=229 Identities=26% Similarity=0.352 Sum_probs=185.4
Q ss_pred cCcccEEEeccC----CCC--CCCCCCCCCCceeeccCCCceeEEEecCCc--eeEEEeCCCCEEEecCCCCCCCCcccC
Q 019441 17 CKETVVYMWGYL----PGT--SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWGSADDEGQSYLTS 88 (341)
Q Consensus 17 ~~~g~v~~wG~n----~g~--~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~--h~~~lt~~G~vy~wG~n~~~GqlG~~~ 88 (341)
.+-|++..+|.- .|. ....+....|..+.-..+.+|+.|++ |+. |+++|+-+|+.|+||.| ..||||+++
T Consensus 17 ~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~Vas-G~~aaH~vli~megk~~~wGRN-ekGQLGhgD 94 (443)
T KOG1427|consen 17 EKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVAS-GCAAAHCVLIDMEGKCYTWGRN-EKGQLGHGD 94 (443)
T ss_pred cCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEec-ccchhhEEEEecccceeecccC-ccCccCccc
Confidence 345788888876 232 22334667788888888899999987 433 99999999999999999 999999999
Q ss_pred CCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCC
Q 019441 89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168 (341)
Q Consensus 89 ~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (341)
......|+.|+.+...+|++.+||++|+++||++|.||.||.|.+||||.....
T Consensus 95 ~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~-------------------------- 148 (443)
T KOG1427|consen 95 MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK-------------------------- 148 (443)
T ss_pred hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc--------------------------
Confidence 999999999999999999999999999999999999999999999999954311
Q ss_pred CccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCC
Q 019441 169 DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~ 248 (341)
.....|.++. ..+..|..|+||..+++.|+..+.+.++|.-.|||||++.
T Consensus 149 -----------------------------~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~t 198 (443)
T KOG1427|consen 149 -----------------------------NEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGT 198 (443)
T ss_pred -----------------------------cccccCCCcc-ccCccceeeccccceEEEeecccceeecCCccccccccCc
Confidence 0111121111 1234899999999999999999999999999999999987
Q ss_pred CCC-------------ccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeC
Q 019441 249 RIK-------------MVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGW 315 (341)
Q Consensus 249 ~~~-------------~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~ 315 (341)
... ..+.|..|..+.. ..|++++||.+|++++.++++||+||.
T Consensus 199 d~~~~~~~~~~~~~~e~~pr~~~i~~~dg------------------------vqiv~~acg~nhtvavd~nkrVysWGF 254 (443)
T KOG1427|consen 199 DNEFNMKDSSVRLAYEAQPRPKAIASLDG------------------------VQIVKVACGTNHTVAVDKNKRVYSWGF 254 (443)
T ss_pred chhhccccccceeeeecCCCccccccccc------------------------eeeEEEeccCcceeeecCCccEEEecc
Confidence 632 1223444444433 789999999999999999999999999
Q ss_pred CCCCCCCccccC
Q 019441 316 GLYGQRMAKCLA 327 (341)
Q Consensus 316 n~~GQLG~~~~~ 327 (341)
+-||+|||.+-.
T Consensus 255 GGyGRLGHaEqK 266 (443)
T KOG1427|consen 255 GGYGRLGHAEQK 266 (443)
T ss_pred ccccccccccch
Confidence 999999996543
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=5.9e-34 Score=247.11 Aligned_cols=246 Identities=22% Similarity=0.258 Sum_probs=201.3
Q ss_pred CchhhhccccccCcccEEEeccC-CCCCCCCC--CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCC
Q 019441 6 SKREENEKMEECKETVVYMWGYL-PGTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (341)
Q Consensus 6 ~~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~--~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~G 82 (341)
++|++-+.+.|+-+++.|.||.| .||||... ..-.|+.|.-+...+|++-++ |++|+++||++|.+|.||.| .+|
T Consensus 63 sG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~G 140 (443)
T KOG1427|consen 63 SGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYG 140 (443)
T ss_pred cccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-ccc
Confidence 68999999999999999999999 89998664 344456566555678888898 99999999999999999999 999
Q ss_pred CCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCc
Q 019441 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (341)
Q Consensus 83 qlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
|||+++...+....+.+-.-..+|+.|+||..+++.|+..+.+.++|-..|||||.+..+..
T Consensus 141 QlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~------------------ 202 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEF------------------ 202 (443)
T ss_pred cccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhh------------------
Confidence 99999988765554444444578999999999999999999999999999999998763311
Q ss_pred ccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCC
Q 019441 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~G 242 (341)
..+...+. -.....+.|..+..+.+..|+++|||.+|++|++++++||+||...||
T Consensus 203 -------------~~~~~~~~-----------~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyG 258 (443)
T KOG1427|consen 203 -------------NMKDSSVR-----------LAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYG 258 (443)
T ss_pred -------------ccccccce-----------eeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEecccccc
Confidence 11111111 111234557778888899999999999999999999999999999999
Q ss_pred ccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCC
Q 019441 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318 (341)
Q Consensus 243 qLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~ 318 (341)
.||+... +..-.|+.|+.++.. +.--.++.||...++.+..-|.||.||.+..
T Consensus 259 RLGHaEq-KDEmvpRlik~Fd~~----------------------~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~ 311 (443)
T KOG1427|consen 259 RLGHAEQ-KDEMVPRLIKVFDRN----------------------NRGPPNAILGYTGSLNVAEGGQLFMWGKIKN 311 (443)
T ss_pred ccccccc-hhhHHHHHHHHhcCC----------------------CCCCcceeeecccceeecccceeEEeecccc
Confidence 9999888 566789988877641 1335688999999999999999999998753
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-24 Score=216.86 Aligned_cols=283 Identities=21% Similarity=0.263 Sum_probs=183.9
Q ss_pred hhhccccccCcccEEEeccCCC---CCCCCCCCCCCceeeccCCCceeEEEecCCcee-EEEeCCCCEEEecCCCCCCCC
Q 019441 9 EENEKMEECKETVVYMWGYLPG---TSPEKSPILSPIPARLCGGDSWKDVCGGGCGFA-LATSESGKLITWGSADDEGQS 84 (341)
Q Consensus 9 ~~~~~~~~~~~g~v~~wG~n~g---~~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~-~~lt~~G~vy~wG~n~~~Gql 84 (341)
+++.++.+--|+..+.-|..+| ..++++.+...+.....+..+|++|++.| |. -++++||+||..|... +
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~~Rr~~P~n~rKIv~v~~s~--~VY~~vSenGkifM~G~~t----m 598 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGRLRRLVPSNRRKIVHVCASG--HVYGYVSENGKIFMGGLHT----M 598 (3738)
T ss_pred CceEEEEeccchhheeeccCcceEEeccCcccccchhhcCCCCcceeEEEeeee--EEEEEEccCCeEEeeccee----E
Confidence 4455555555555555555544 12333333333333334467899998633 54 4799999999999861 0
Q ss_pred cccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCC-----Cccc--CCCCCC
Q 019441 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG-----SFQK--DSTGKQ 157 (341)
Q Consensus 85 G~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~-----~~~~--~~~~~~ 157 (341)
........+..++..-|.+++.|+.|+++++.+|+||+||-|+.+|+|+...-.-... ..+. -.+|-+
T Consensus 599 -----~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~H 673 (3738)
T KOG1428|consen 599 -----RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEH 673 (3738)
T ss_pred -----EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccc
Confidence 1112234556666677999999999999999999999999999999998532110000 0000 011212
Q ss_pred CCCCcccCCC------------------------------------CCccccchhhcceeeeccccCCCCCCCCCCcccc
Q 019441 158 SALPTEQAPP------------------------------------SDKRAGEEVVKRRKTSSAREESENPASGDEFFTL 201 (341)
Q Consensus 158 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (341)
.........| +..+.-....++.+-....+....+..-.+....
T Consensus 674 tW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~ 753 (3738)
T KOG1428|consen 674 TWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTL 753 (3738)
T ss_pred eeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheeccccccccccc
Confidence 1111111111 1111111122222222222222222223333444
Q ss_pred cceeeecC---CCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecC
Q 019441 202 SPCLVTLN---PGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG 278 (341)
Q Consensus 202 ~p~~v~~~---~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~ 278 (341)
-|..+... .+.++++|+||..|+++|-++++||+||.|.+||||.++. .....|+++..+.+
T Consensus 754 HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt-~Sk~~Pq~V~~~~~-------------- 818 (3738)
T KOG1428|consen 754 HPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDT-LSKNTPQQVILPSD-------------- 818 (3738)
T ss_pred CchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCcc-ccCCCcceEEcCCC--------------
Confidence 45544443 3478999999999999999999999999999999999998 57789999988776
Q ss_pred cccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccccC
Q 019441 279 SVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLA 327 (341)
Q Consensus 279 ~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~~~ 327 (341)
..+++|++|.+|++++..||.||++|+-..|||+.+.+.
T Consensus 819 ----------t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e 857 (3738)
T KOG1428|consen 819 ----------TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGE 857 (3738)
T ss_pred ----------CceEEEecCCCceEEEecCCcEEEeccccCccccCcccc
Confidence 679999999999999999999999999999999986543
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=209.89 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=182.0
Q ss_pred ccccCcccEEEeccC-CCCCC--CCCCCCCCceeeccC--CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccC
Q 019441 14 MEECKETVVYMWGYL-PGTSP--EKSPILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS 88 (341)
Q Consensus 14 ~~~~~~g~v~~wG~n-~g~~g--~~~~~~~p~~~~~~~--~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~ 88 (341)
-+++....||+||.| +..|| +......|..+.+.. +.=+.+|+. ++.|++++++.|+||+||-. .-|.||.++
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l-~kfHSvfl~~kgqvY~cGhG-~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQL-SKFHSVFLTEKGQVYVCGHG-AGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHH-hhceeeEecCCCcEEEeccC-CCCccCcCc
Confidence 345677899999999 55555 456777888888776 555788888 88899999999999999999 899999998
Q ss_pred CCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCC
Q 019441 89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS 168 (341)
Q Consensus 89 ~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (341)
......|+.++.+...+|.+|+....|+++||++|.||+||-|...|||..... ..
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~------~~------------------ 269 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE------LK------------------ 269 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch------hh------------------
Confidence 877888999999999999999999999999999999999999999999954321 00
Q ss_pred CccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCC
Q 019441 169 DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS 248 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~ 248 (341)
-++..+..+..++... .|+.|++|..|++|-++. .||+||.|. ||||+.+
T Consensus 270 --------------------------~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~ 319 (1267)
T KOG0783|consen 270 --------------------------KDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISD 319 (1267)
T ss_pred --------------------------cCchhhhhhHhhcchh--hhhhhhcccceeeeeecc-eEEEecccC-ceecCCC
Confidence 0111122233333332 799999999999999885 599999996 9999999
Q ss_pred CCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCC
Q 019441 249 RIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL 317 (341)
Q Consensus 249 ~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~ 317 (341)
....+..|+.+..+. ..|+-|.|-..-|++++.++.+|++-.-.
T Consensus 320 n~~~Vt~Pr~l~~~~-------------------------~~v~~v~a~~~ATVc~~~~~~i~~~ady~ 363 (1267)
T KOG0783|consen 320 NISVVTTPRRLAGLL-------------------------SPVIHVVATTRATVCLLQNNSIIAFADYN 363 (1267)
T ss_pred CCceeecchhhcccc-------------------------cceEEEEecCccEEEEecCCcEEEEeccc
Confidence 988999998775443 67999999999999999999999886533
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=1.8e-24 Score=208.72 Aligned_cols=183 Identities=25% Similarity=0.337 Sum_probs=156.5
Q ss_pred EEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCC--CcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccc
Q 019441 64 LATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR 141 (341)
Q Consensus 64 ~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~--~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~ 141 (341)
.+++.-.+||+||.| ..-.||.++......|+.+.+... .-+.+|+.+..|+++|++.|+||++|-..-|.||.
T Consensus 136 ~~~d~pndvy~wG~N-~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~--- 211 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTN-VNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGF--- 211 (1267)
T ss_pred cccCCccceeEeccc-ccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCc---
Confidence 467777999999999 889999999999999999987754 44789999999999999999999999777776663
Q ss_pred cCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCC
Q 019441 142 DFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGG 221 (341)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~ 221 (341)
+|....+.|+.++.+.+.+|.+|+...
T Consensus 212 -----------------------------------------------------gdeq~~~iPkrV~gL~gh~~~qisvs~ 238 (1267)
T KOG0783|consen 212 -----------------------------------------------------GDEQYNFIPKRVPGLIGHKVIQISVSH 238 (1267)
T ss_pred -----------------------------------------------------CcccccccccccccccccceEEEEeec
Confidence 445567889999999999999999999
Q ss_pred CeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeE
Q 019441 222 RHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHS 301 (341)
Q Consensus 222 ~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs 301 (341)
.|+++||++|-||+||.|.++|||..........|.+|.-....+ ...|+.|+||..|+
T Consensus 239 ~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg---------------------~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 239 THSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKG---------------------FKQIIGVAAGKSHS 297 (1267)
T ss_pred ceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcc---------------------hhhhhhhhccccee
Confidence 999999999999999999999999988877777788775333211 04799999999999
Q ss_pred EEEeCCCCEEEeeCCCCCCCCcccc
Q 019441 302 AVVTDAGALLTFGWGLYGQRMAKCL 326 (341)
Q Consensus 302 ~~lt~~G~v~~wG~n~~GQLG~~~~ 326 (341)
++.|.. .||+||.|. ||||++..
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n 320 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDN 320 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCC
Confidence 999955 799999987 99998643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-17 Score=164.52 Aligned_cols=106 Identities=26% Similarity=0.356 Sum_probs=90.2
Q ss_pred CCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhccee
Q 019441 102 TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRK 181 (341)
Q Consensus 102 ~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
-+.++.+|+||..|+++|-+|++||++|.|.+||||.
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~------------------------------------------- 801 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGV------------------------------------------- 801 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCc-------------------------------------------
Confidence 3477999999999999999999999999999999994
Q ss_pred eeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCc--cCCCeee
Q 019441 182 TSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKM--VPTPHLI 259 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~--~~~P~~i 259 (341)
+|......|+.+..+++..|++|++|.+|++++..||.||+||.=..|||+...-+.. ...|.++
T Consensus 802 -------------GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v 868 (3738)
T KOG1428|consen 802 -------------GDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKV 868 (3738)
T ss_pred -------------CccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcC
Confidence 4455677899999999999999999999999999999999999999999998654322 2356666
Q ss_pred cccc
Q 019441 260 PCLE 263 (341)
Q Consensus 260 ~~~~ 263 (341)
+.+-
T Consensus 869 ~~~G 872 (3738)
T KOG1428|consen 869 SGFG 872 (3738)
T ss_pred CCCC
Confidence 5443
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.31 E-value=2.4e-12 Score=85.85 Aligned_cols=51 Identities=35% Similarity=0.695 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEE
Q 019441 230 MGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVV 304 (341)
Q Consensus 230 ~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~l 304 (341)
+|+||+||.|.+||||..........|++|+.+.. .+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~------------------------~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSG------------------------VRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTT------------------------SEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCC------------------------CCEEEEEeCcceEEEC
Confidence 69999999999999995555578889999998876 7899999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.22 E-value=4.8e-12 Score=84.38 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=46.1
Q ss_pred CCCEEEecCCCCCCCCc-ccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEE
Q 019441 69 SGKLITWGSADDEGQSY-LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119 (341)
Q Consensus 69 ~G~vy~wG~n~~~GqlG-~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~l 119 (341)
||+||+||.| ++|||| .........|++++.+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n-~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSN-DYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEE-TTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECC-CCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999 999999 7777777899999999889999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.21 E-value=1.8e-11 Score=71.66 Aligned_cols=30 Identities=40% Similarity=0.782 Sum_probs=26.2
Q ss_pred EEEEEcCCCeEEEEecCCcEEEEeCCCCCc
Q 019441 214 ITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243 (341)
Q Consensus 214 i~~Ia~G~~h~~aLt~~G~vy~wG~n~~Gq 243 (341)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.21 E-value=2e-11 Score=71.50 Aligned_cols=30 Identities=43% Similarity=0.808 Sum_probs=26.2
Q ss_pred EEEEeeCCCeEEEEeCCCCEEEeeCCCCCC
Q 019441 291 VKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320 (341)
Q Consensus 291 i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQ 320 (341)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-12 Score=126.74 Aligned_cols=145 Identities=29% Similarity=0.480 Sum_probs=116.8
Q ss_pred CCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCcccc
Q 019441 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173 (341)
Q Consensus 94 ~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (341)
.|..+..+...+|.+++||.+|+++++..|++|+||.+.+||+|+...
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~-------------------------------- 51 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY-------------------------------- 51 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc--------------------------------
Confidence 344555555678999999999999999999999999999999996411
Q ss_pred chhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEec-------CCcEEEEeCCCCCccCC
Q 019441 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD-------MGQVWGWGYGGEGQLGL 246 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~-------~G~vy~wG~n~~GqLG~ 246 (341)
.....|.+++.+.+.+..+|++|.+|++++.. +|.++++|....||+|+
T Consensus 52 ------------------------~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h 107 (850)
T KOG0941|consen 52 ------------------------FPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGH 107 (850)
T ss_pred ------------------------CCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCcccccccc
Confidence 01122888888889999999999999888876 99999999999999999
Q ss_pred CCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEe-CCCCEEEeeCCCCC
Q 019441 247 GSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVT-DAGALLTFGWGLYG 319 (341)
Q Consensus 247 ~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt-~~G~v~~wG~n~~G 319 (341)
... .....|..+..+-. ..+.+|+||-.|+++.. .-|+.|..|.+..|
T Consensus 108 ~~~-~~~~~~~~v~e~i~------------------------~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 108 SLT-ENEVLPLLVLELIG------------------------SRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ccc-ccccccHHHHHHHh------------------------hhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 544 34445555544433 77999999999998876 55899999999988
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3e-11 Score=118.95 Aligned_cols=145 Identities=25% Similarity=0.360 Sum_probs=117.7
Q ss_pred CCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEE
Q 019441 40 SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119 (341)
Q Consensus 40 ~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~l 119 (341)
.|+.+.+.....+.++.| |..|+++++..|++|.||.+ .+||+|++..-....|.+++.+.+.+..+|++|.+|++++
T Consensus 4 ~~~~~~~l~~k~~lq~~c-Gn~hclal~~~g~~~~wg~~-~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~l 81 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGC-GNNHCLALSCAGELFVWGMN-NNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFAL 81 (850)
T ss_pred hhHHHHHHhhhhhhhhcc-ccHHHHhhhccCCeeeccCC-ccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhh
Confidence 456666777789999999 66899999999999999999 9999998854444459999999999999999999998877
Q ss_pred ec-------CCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCC
Q 019441 120 TE-------AGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENP 192 (341)
Q Consensus 120 t~-------~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
+. .|.++++|....+|+|.....
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~-------------------------------------------------- 111 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLTE-------------------------------------------------- 111 (850)
T ss_pred hhchhhcchhccccccCCcccccccccccc--------------------------------------------------
Confidence 66 999999999999998863211
Q ss_pred CCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEec-CCcEEEEeCCCCC
Q 019441 193 ASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSD-MGQVWGWGYGGEG 242 (341)
Q Consensus 193 ~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~-~G~vy~wG~n~~G 242 (341)
....|..+..+-+..+.+|+|+..|++++.. -|++|.+|.+..|
T Consensus 112 ------~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 112 ------NEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred ------cccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 1233444444445689999999999998864 5999999999887
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.55 E-value=6.7 Score=38.69 Aligned_cols=100 Identities=22% Similarity=0.198 Sum_probs=63.0
Q ss_pred eeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCe---ecCCCCCCcEEEEeecC-CeeEEEecCCcEEE-ecCCCCcCC
Q 019441 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPE---PFPLPTEASVVKAAAGW-AHCVSVTEAGEVYT-WGWRECVPS 136 (341)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~---~i~~~~~~~i~~Va~G~-~hs~~lt~~G~vy~-wG~n~~gql 136 (341)
..-+|.++|++|. ..|.. ...|. ...+.+..++.+|++|. .-..+++.+|.||. -|-....+.
T Consensus 194 ~awAI~s~Gd~y~-----RtGvs-------~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 194 TAWAIRSSGDLYL-----RTGVS-------VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred EEEEEecCCcEEE-----ecccc-------CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 4446777777776 33321 22221 12233445799999999 88899999999875 344333332
Q ss_pred CCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEE
Q 019441 137 AKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITK 216 (341)
Q Consensus 137 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~ 216 (341)
| +. -+..+++...+ .++-
T Consensus 262 G----------------------------------------------------------ds-WkdI~tP~~a~---~~v~ 279 (705)
T KOG3669|consen 262 G----------------------------------------------------------DS-WKDIVTPRQAL---EPVC 279 (705)
T ss_pred C----------------------------------------------------------ch-hhhccCccccc---ceEE
Confidence 2 11 12333333332 4899
Q ss_pred EEcCCCeEEEEecCCcEEE
Q 019441 217 VAAGGRHTLILSDMGQVWG 235 (341)
Q Consensus 217 Ia~G~~h~~aLt~~G~vy~ 235 (341)
|+.|.....+||.+|++|.
T Consensus 280 iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 280 ISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred EEeccceEEEEecCCcEEE
Confidence 9999999999999999986
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.49 E-value=2.6 Score=41.45 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=52.0
Q ss_pred eEEEEEcCC-CeEEEEecCCcEE-EEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCc
Q 019441 213 KITKVAAGG-RHTLILSDMGQVW-GWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290 (341)
Q Consensus 213 ~i~~Ia~G~-~h~~aLt~~G~vy-~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (341)
++.+|++|. .-..|++.+|+|| --|-..+.+.|..-. .+.+|+.. ..
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk--dI~tP~~a-----------------------------~~ 276 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK--DIVTPRQA-----------------------------LE 276 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh--hccCcccc-----------------------------cc
Confidence 688999999 7788999999976 456666555554432 33444432 23
Q ss_pred EEEEeeCCCeEEEEeCCCCEEEe
Q 019441 291 VKEIACGGRHSAVVTDAGALLTF 313 (341)
Q Consensus 291 i~~V~~G~~hs~~lt~~G~v~~w 313 (341)
++.|+.|....-+|+++|+||.-
T Consensus 277 ~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 277 PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred eEEEEeccceEEEEecCCcEEEE
Confidence 89999999999999999999863
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=85.56 E-value=5.6 Score=44.10 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCe-EEEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCc
Q 019441 212 VKITKVAAGGRH-TLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSY 290 (341)
Q Consensus 212 ~~i~~Ia~G~~h-~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (341)
.+|++|+.=..| .+||+.+|++|..-.-.+.+.-.++.....+.|..+| .+ ..
T Consensus 744 G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP--~~------------------------~~ 797 (1774)
T PF11725_consen 744 GEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP--DE------------------------QP 797 (1774)
T ss_pred cchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC--CC------------------------Cc
Confidence 389999998885 7799999999986554433322222222334454444 33 56
Q ss_pred EEEEeeCCCeEEEEeCCC
Q 019441 291 VKEIACGGRHSAVVTDAG 308 (341)
Q Consensus 291 i~~V~~G~~hs~~lt~~G 308 (341)
|..+....+|.+.+.-++
T Consensus 798 v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 798 VKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred hhhhhcCCCCceEEEecC
Confidence 778888888877776554
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=0.096 Score=55.02 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhccee
Q 019441 102 TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRK 181 (341)
Q Consensus 102 ~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
...+++.|.+-.+..++|..+|++|.|-+...--+... +..
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddp---------lai------------------------------ 412 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDP---------LAI------------------------------ 412 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCCh---------hhc------------------------------
Confidence 34789999999999999999999999998764211100 000
Q ss_pred eeccccCCCCCCCCCCcccccce-eeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCC-Ceee
Q 019441 182 TSSAREESENPASGDEFFTLSPC-LVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPT-PHLI 259 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~p~-~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~-P~~i 259 (341)
.....-|. ..-.+.+.+|+.+++..--.-++|++|+|-+|=+- +|.+...+-..+ .+.+
T Consensus 413 ---------------~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWlDE----cgagV~fkLa~ea~Tki 473 (3015)
T KOG0943|consen 413 ---------------NKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWLDE----CGAGVAFKLAHEAQTKI 473 (3015)
T ss_pred ---------------ccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHHhh----hhhhhhhhhhhhhhhhh
Confidence 00011111 12334567999999999999999999999999542 222221111111 1122
Q ss_pred cccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCC
Q 019441 260 PCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY 318 (341)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~ 318 (341)
. .+. ..+++..|-..|.++...|.-+|-||-=-+
T Consensus 474 e-ed~------------------------~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 474 E-EDG------------------------EMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred h-hhh------------------------HHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 1 221 567888888999999999999999986443
No 19
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.87 E-value=6.5 Score=34.33 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCeEEEEecCCcEEEEeCCC
Q 019441 212 VKITKVAAGGRHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 212 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~ 240 (341)
.+++.+.|-..+.++||++|.+|+|-...
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 47888999999999999999999997665
No 20
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=76.63 E-value=81 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=35.5
Q ss_pred hhhhccccccCcccEEEeccCCCCCCCCC---------------CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCE
Q 019441 8 REENEKMEECKETVVYMWGYLPGTSPEKS---------------PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKL 72 (341)
Q Consensus 8 ~~~~~~~~~~~~g~v~~wG~n~g~~g~~~---------------~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~v 72 (341)
|-+.-.+|...+|...+=|. .|+.+..+ ..+--+-+.+.+.. +.|++.|..|-+++. |
T Consensus 78 Rk~~t~vAfS~~GryvatGE-cG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~--kyvvSVGsQHDMIVn----v 150 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGE-CGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGN--KYVVSVGSQHDMIVN----V 150 (1080)
T ss_pred CcceeEEEEcCCCcEEEecc-cCCCccceeeeeccccchhhhhhccccceeeeecCCC--cEEEeeccccceEEE----h
Confidence 44666778888888877776 23333211 11222333333322 223333667877775 7
Q ss_pred EEecCC
Q 019441 73 ITWGSA 78 (341)
Q Consensus 73 y~wG~n 78 (341)
|.|-.|
T Consensus 151 ~dWr~N 156 (1080)
T KOG1408|consen 151 NDWRVN 156 (1080)
T ss_pred hhhhhc
Confidence 788888
No 21
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.11 E-value=13 Score=32.36 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=43.9
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCe---ecCC-------CCCCcEEEEeecC-CeeE
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPE---PFPL-------PTEASVVKAAAGW-AHCV 117 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~---~i~~-------~~~~~i~~Va~G~-~hs~ 117 (341)
+.+++.+.+-+ .+.++||.+|.+|.|--. . +.. ...|. |+-. .....|+.+.... ..-+
T Consensus 12 gs~~~~l~~~~-~~Ll~iT~~G~l~vWnl~-~-~k~-------~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 12 GSPVSFLECNG-SYLLAITSSGLLYVWNLK-K-GKA-------VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred CCceEEEEeCC-CEEEEEeCCCeEEEEECC-C-Cee-------ccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Confidence 45777888844 689999999999999886 2 111 11111 1110 2335566555553 4455
Q ss_pred EEecCCcEEEecC
Q 019441 118 SVTEAGEVYTWGW 130 (341)
Q Consensus 118 ~lt~~G~vy~wG~ 130 (341)
+..++|+.|+|=.
T Consensus 82 V~lsng~~y~y~~ 94 (219)
T PF07569_consen 82 VTLSNGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEecc
Confidence 6667788888743
No 22
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=72.89 E-value=8.7 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.5
Q ss_pred CcEEEEeecC-CeeEEEecCCcEEEe
Q 019441 104 ASVVKAAAGW-AHCVSVTEAGEVYTW 128 (341)
Q Consensus 104 ~~i~~Va~G~-~hs~~lt~~G~vy~w 128 (341)
..+++|++|. +...+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 6799999999 999999999999963
No 23
>PRK05560 DNA gyrase subunit A; Validated
Probab=71.43 E-value=1.4e+02 Score=31.56 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=46.9
Q ss_pred cCCCceeEE-EecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecC-----CeeEEEe
Q 019441 47 CGGDSWKDV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVT 120 (341)
Q Consensus 47 ~~~~~i~~i-~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~-----~hs~~lt 120 (341)
..++.+..+ .|-...+.+++|+.|++|..-.. ..-..+.... -......+.+..+.+|+.+.+-. ...+++|
T Consensus 534 Ke~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~-~iP~~~~~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvT 611 (805)
T PRK05560 534 KEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVY-EIPEASRTAR-GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFAT 611 (805)
T ss_pred CCCCeeEEEEEecCCCeEEEEecCCeEEEEEhh-hCcCCCcCCC-CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEe
Confidence 344555555 33244568889999999998776 3322221100 00111234455667788777754 3467888
Q ss_pred cCCcEEEec
Q 019441 121 EAGEVYTWG 129 (341)
Q Consensus 121 ~~G~vy~wG 129 (341)
.+|.+...-
T Consensus 612 k~GyiKRi~ 620 (805)
T PRK05560 612 KNGTVKKTS 620 (805)
T ss_pred CCCEEEEEE
Confidence 888776543
No 24
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=70.78 E-value=11 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred CcEEEEeeCC-CeEEEEeCCCCEEEe
Q 019441 289 SYVKEIACGG-RHSAVVTDAGALLTF 313 (341)
Q Consensus 289 ~~i~~V~~G~-~hs~~lt~~G~v~~w 313 (341)
..+++|++|. +...+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 899999999999863
No 25
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=68.45 E-value=1.7e+02 Score=31.08 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred ccCCCceeEE-EecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec-----CCeeEEE
Q 019441 46 LCGGDSWKDV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSV 119 (341)
Q Consensus 46 ~~~~~~i~~i-~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G-----~~hs~~l 119 (341)
...++.++.+ .|-...+.+++|+.|++|..-.. ..-..+.... -......+.+..+.+|+.+.+- ....+++
T Consensus 531 lKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~-~IP~~~r~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvli 608 (800)
T TIGR01063 531 MKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVY-QIPEASRTAK-GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFA 608 (800)
T ss_pred cCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhh-hCcCCCcCCC-CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEE
Confidence 3344555554 33344578899999999999554 3222221110 1111123445566778777662 2346777
Q ss_pred ecCCcEEEec
Q 019441 120 TEAGEVYTWG 129 (341)
Q Consensus 120 t~~G~vy~wG 129 (341)
|.+|.+--.-
T Consensus 609 T~~GyiKRi~ 618 (800)
T TIGR01063 609 TKNGVVKKTS 618 (800)
T ss_pred eCCCEEEEEE
Confidence 8888776653
No 26
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=61.16 E-value=2.4e+02 Score=30.50 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred cCCCceeEEE-ecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecC-CC-CCCcEEEEeecCC-----eeEE
Q 019441 47 CGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFP-LP-TEASVVKAAAGWA-----HCVS 118 (341)
Q Consensus 47 ~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~-~~-~~~~i~~Va~G~~-----hs~~ 118 (341)
..++.+.++. |....+.+++|+.|++|.--.. .--...... .-......+. +. .+.+|+.+.+-.. +.++
T Consensus 549 ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-~IPe~~~~~-~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~ 626 (957)
T PRK13979 549 REGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-NIPEFKWKE-KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIF 626 (957)
T ss_pred CCCCceEEEEEEcCCCEEEEEECCCeEEEEEee-eCCCCCcCC-CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEE
Confidence 3455665553 3255578889999999998776 322211100 0001111221 21 3567777766532 3677
Q ss_pred EecCCcEEEec
Q 019441 119 VTEAGEVYTWG 129 (341)
Q Consensus 119 lt~~G~vy~wG 129 (341)
+|.+|.+.-.-
T Consensus 627 ~Tk~G~VKrt~ 637 (957)
T PRK13979 627 ITDSGGIKKTS 637 (957)
T ss_pred EECCCeEEEEe
Confidence 88888887654
No 27
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=58.89 E-value=14 Score=39.90 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCC-CCccCCCeeec-ccccccCCCCCceEeecCcccccCCCCC
Q 019441 211 GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSR-IKMVPTPHLIP-CLEHAASGKDRPLLVRQGSVNSSGKAGR 288 (341)
Q Consensus 211 ~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~-~~~~~~P~~i~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 288 (341)
..+++.|.+-.+..+||...|++|.|-+...--|-.... .....-|..-. .+ -+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~------------------------hg 428 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGL------------------------HG 428 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecc------------------------cC
Confidence 468999999999999999999999999876433322111 11222222111 11 11
Q ss_pred CcEEEEeeCCCeEEEEeCCCCEEEe
Q 019441 289 SYVKEIACGGRHSAVVTDAGALLTF 313 (341)
Q Consensus 289 ~~i~~V~~G~~hs~~lt~~G~v~~w 313 (341)
.+|+.+++..-..-++|.+|+|-+|
T Consensus 429 e~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 429 EKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeecCceeeeeeecCCchhhH
Confidence 7899999999999999999999998
No 28
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=54.65 E-value=37 Score=19.03 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=20.7
Q ss_pred CcEEEEeecCCeeEEEecCCcEEE
Q 019441 104 ASVVKAAAGWAHCVSVTEAGEVYT 127 (341)
Q Consensus 104 ~~i~~Va~G~~hs~~lt~~G~vy~ 127 (341)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 578999999999999999887654
No 29
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=53.14 E-value=24 Score=39.42 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred CceeeccC-CCceeEEEecCCceeE-EEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEE
Q 019441 41 PIPARLCG-GDSWKDVCGGGCGFAL-ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVS 118 (341)
Q Consensus 41 p~~~~~~~-~~~i~~i~~~g~~h~~-~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~ 118 (341)
|+++..+. .-.|++|++ ...|.+ +++++|+||..-.- .-... .........-.++.+|.+.+|..+....+|.+.
T Consensus 734 p~~l~~~gl~G~ik~l~l-D~~~nL~Alt~~G~Lf~~~k~-~WQ~~-~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~ 810 (1774)
T PF11725_consen 734 PVPLSRPGLSGEIKDLAL-DEKQNLYALTSTGELFRLPKE-AWQGN-AEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLS 810 (1774)
T ss_pred CccCCCCCCCcchhheee-ccccceeEecCCCceeecCHH-HhhCc-ccCCccccCceeccCCCCCchhhhhcCCCCceE
Confidence 55555443 468999999 656554 79999999995443 11110 000111234567888888999999999999888
Q ss_pred EecCC
Q 019441 119 VTEAG 123 (341)
Q Consensus 119 lt~~G 123 (341)
+.-++
T Consensus 811 ~~~~d 815 (1774)
T PF11725_consen 811 AQIED 815 (1774)
T ss_pred EEecC
Confidence 87766
No 30
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=51.99 E-value=2.4e+02 Score=29.58 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=51.7
Q ss_pred ceeeccCCCceeEEEec-CCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCC--eeEE
Q 019441 42 IPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVS 118 (341)
Q Consensus 42 ~~~~~~~~~~i~~i~~~-g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~--hs~~ 118 (341)
..+.+..++.++.+..+ +..+.+++|++|++|.+-.+ +-- .|.+... .....+.+..+.+|+.+.+... +.++
T Consensus 517 saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~-eIP-~GR~aGg--pV~~~L~L~~gE~Iv~~~~v~~~~~lLl 592 (735)
T TIGR01062 517 STLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPD-NLP-SARGQGE--PLTGKLLLPIGATITNILMYSPNQLLLM 592 (735)
T ss_pred hccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhH-hcC-cCccCCc--eeEeeecCCCCCEEEEEEEecCCcEEEE
Confidence 45555566667666442 33368899999999999887 432 2222111 1112344556677888877643 4678
Q ss_pred EecCCcEEEec
Q 019441 119 VTEAGEVYTWG 129 (341)
Q Consensus 119 lt~~G~vy~wG 129 (341)
+|+.|..+..-
T Consensus 593 aT~~GyGKrt~ 603 (735)
T TIGR01062 593 ASDAGYGFLCN 603 (735)
T ss_pred EEcCCcEEEEE
Confidence 88888766654
No 31
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=46.42 E-value=3.9e+02 Score=28.41 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=40.2
Q ss_pred eeEEEeCCCC-EEEecCCCCCCCCcccCC-CCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCc--EEEecCC
Q 019441 62 FALATSESGK-LITWGSADDEGQSYLTSG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE--VYTWGWR 131 (341)
Q Consensus 62 h~~~lt~~G~-vy~wG~n~~~GqlG~~~~-~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~--vy~wG~n 131 (341)
..++++.+|+ |+++|.+. -.-.-.. .....|+-+.. ....|..|++-..|.+.=++++. +|.+++.
T Consensus 17 t~i~~d~~gefi~tcgsdg---~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDG---DIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred EEEEEcCCCCEEEEecCCC---ceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 4456677776 77777762 1111011 12255666654 45788999998888888888875 5655543
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.84 E-value=4.6e+02 Score=29.22 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=39.0
Q ss_pred hhccccccCcccEEEeccC-CCCCCC--C-CCCCCC-ceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCC
Q 019441 10 ENEKMEECKETVVYMWGYL-PGTSPE--K-SPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (341)
Q Consensus 10 ~~~~~~~~~~g~v~~wG~n-~g~~g~--~-~~~~~p-~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gq 83 (341)
|+..+=++-|..+|.|=.+ ++.... + ...... ..++...+.-+-.| .|.++|.+--+|+..|-..+..+
T Consensus 89 eI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-----qhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 89 EIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-----QHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred hhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-----heeEEecccceEEEEEEEecccc
Confidence 3445557889999999887 343331 1 111111 11222223333333 49999999999999888643333
No 33
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.75 E-value=2.3e+02 Score=27.26 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEEEEcCCCeEEEEe--cCCcEEEEeCCC
Q 019441 213 KITKVAAGGRHTLILS--DMGQVWGWGYGG 240 (341)
Q Consensus 213 ~i~~Ia~G~~h~~aLt--~~G~vy~wG~n~ 240 (341)
-|.+.++|.+-.++.. +|++||.|-.-+
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 4678888888777774 789999998754
No 34
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=45.49 E-value=25 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.407 Sum_probs=16.0
Q ss_pred CeEEEEecCCcEEEEeCCC
Q 019441 222 RHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 222 ~h~~aLt~~G~vy~wG~n~ 240 (341)
-+.++++.+|.+|.-|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999743
No 35
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=43.90 E-value=73 Score=28.75 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=13.3
Q ss_pred CCeeEEEecCCcEEEecCC
Q 019441 113 WAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 113 ~~hs~~lt~~G~vy~wG~n 131 (341)
+.|++...+ +..|.+|-.
T Consensus 183 DFH~a~~~~-~~MYiFGGR 200 (392)
T KOG4693|consen 183 DFHTASVID-GMMYIFGGR 200 (392)
T ss_pred hhhhhhhcc-ceEEEeccc
Confidence 567766655 899999854
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=42.52 E-value=2.5e+02 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=16.3
Q ss_pred cCCCeEEEEecCCcEEEEeCCC
Q 019441 219 AGGRHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 219 ~G~~h~~aLt~~G~vy~wG~n~ 240 (341)
--..|.+.=+.+|.|+.|-...
T Consensus 134 pnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred CCcceEEeecCCCcEEEEEccC
Confidence 3345777778999999997643
No 37
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=41.95 E-value=4.4e+02 Score=27.69 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=36.4
Q ss_pred CCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEe--ecCCeeEEEecCCcEEEecCCC
Q 019441 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWRE 132 (341)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va--~G~~hs~~lt~~G~vy~wG~n~ 132 (341)
-...++++|++|-|-.--.. .+. +.-+.+-.+..++.+. ....+.+++|++|++|.+-...
T Consensus 493 ~e~v~VilTk~G~IKr~~~~-~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~e 555 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGH-DID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDN 555 (735)
T ss_pred CcceEEEEecCCEEEecccc-ccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHh
Confidence 34577889999987764444 221 1122222233344443 3445689999999999986543
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=41.74 E-value=26 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=12.2
Q ss_pred CCeeEEEecCCcEEEecC
Q 019441 113 WAHCVSVTEAGEVYTWGW 130 (341)
Q Consensus 113 ~~hs~~lt~~G~vy~wG~ 130 (341)
..|++++..+++||.+|=
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368889888899999983
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=39.75 E-value=1e+02 Score=28.01 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred hhhccccccCcccEEEeccCCCCCC---CCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCc
Q 019441 9 EENEKMEECKETVVYMWGYLPGTSP---EKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85 (341)
Q Consensus 9 ~~~~~~~~~~~g~v~~wG~n~g~~g---~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (341)
++-..++...+|.||.=+...+..| ..+...+ .+++. +|..-|.+++..||..|.+-....-+.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~--~ypLg---------~Ga~Phgiv~gpdg~~Witd~~~aI~R~- 129 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE--TYPLG---------SGASPHGIVVGPDGSAWITDTGLAIGRL- 129 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceE--EEecC---------CCCCCceEEECCCCCeeEecCcceeEEe-
Confidence 3456788899999998777644444 2222211 12222 2234488999999999998665212222
Q ss_pred ccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCC
Q 019441 86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 86 ~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n 131 (341)
+....+. +..+++ .+.+-+.-.+.+++..|+||--|.+
T Consensus 130 -dpkt~ev--t~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~ 167 (353)
T COG4257 130 -DPKTLEV--TRFPLP-----LEHADANLETAVFDPWGNLWFTGQI 167 (353)
T ss_pred -cCcccce--EEeecc-----cccCCCcccceeeCCCccEEEeecc
Confidence 1111111 122222 2333455668899999999999874
No 40
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=37.99 E-value=98 Score=28.74 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=36.6
Q ss_pred cCcccEEEeccCCCCCCCCCCCCCCceeeccCCCceeEEEecCC-ceeEEEeCCCCEEEecC
Q 019441 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGC-GFALATSESGKLITWGS 77 (341)
Q Consensus 17 ~~~g~v~~wG~n~g~~g~~~~~~~p~~~~~~~~~~i~~i~~~g~-~h~~~lt~~G~vy~wG~ 77 (341)
...|+||+|--. ...+...++......+..|.|.+..-. ...+++++++.||.|-.
T Consensus 326 nq~g~v~vwdL~-----~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLD-----NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECC-----CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 456888888431 222335566666666788888865222 25667899999999953
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=36.77 E-value=87 Score=28.50 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=56.3
Q ss_pred ccccccCcccEEEeccC--CCCCCCCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCC
Q 019441 12 EKMEECKETVVYMWGYL--PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (341)
Q Consensus 12 ~~~~~~~~g~v~~wG~n--~g~~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~ 89 (341)
+.|.+..+|..|+.-.. -+++..++. .-+..+++. +..-.+ --+++++.+|+||.-|.+..+|.|--...
T Consensus 107 hgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~lp~-----~~a~~n-let~vfD~~G~lWFt~q~G~yGrLdPa~~ 178 (353)
T COG4257 107 HGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFPLPL-----EHADAN-LETAVFDPWGNLWFTGQIGAYGRLDPARN 178 (353)
T ss_pred ceEEECCCCCeeEecCcceeEEecCccc--ceEEeeccc-----ccCCCc-ccceeeCCCccEEEeeccccceecCcccC
Confidence 56777888888888553 223333322 222233331 111113 36789999999999999867787622211
Q ss_pred CCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEe
Q 019441 90 KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (341)
Q Consensus 90 ~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~w 128 (341)
.....|.| . -+.-..++.|-||+||.-
T Consensus 179 ~i~vfpaP----q--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 179 VISVFPAP----Q--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ceeeeccC----C--------CCCCcceEECCCCcEEEE
Confidence 12222222 1 234567899999999986
No 42
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=36.01 E-value=4.2e+02 Score=25.81 Aligned_cols=93 Identities=14% Similarity=0.241 Sum_probs=49.8
Q ss_pred cCcccEEEeccCCCCCCCC-CCCCCC-ceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCC
Q 019441 17 CKETVVYMWGYLPGTSPEK-SPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94 (341)
Q Consensus 17 ~~~g~v~~wG~n~g~~g~~-~~~~~p-~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~ 94 (341)
+..+++|.|=-+.|.|=.. ...+++ +.+.+.. ...|.+--..||.|..|=--+-..+ .....
T Consensus 100 ~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~----------dgs~iiTgskDg~V~vW~l~~lv~a------~~~~~ 163 (476)
T KOG0646|consen 100 TISGNLYLWELSSGILLNVLSAHYQSITCLKFSD----------DGSHIITGSKDGAVLVWLLTDLVSA------DNDHS 163 (476)
T ss_pred cccCcEEEEEeccccHHHHHHhhccceeEEEEeC----------CCcEEEecCCCccEEEEEEEeeccc------ccCCC
Confidence 3568888887766765321 111221 2222222 2235444567888888877521111 12225
Q ss_pred CeecCCCCC--CcEEEEeecCCeeEEEecCCcEEEecC
Q 019441 95 PEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (341)
Q Consensus 95 p~~i~~~~~--~~i~~Va~G~~hs~~lt~~G~vy~wG~ 130 (341)
|.|+....+ ..|.++.+|..- .+.+||+-+.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~ 196 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASE 196 (476)
T ss_pred ccceeeeccCcceeEEEEecCCC-----ccceEEEecC
Confidence 566655443 568888887665 4566776553
No 43
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.33 E-value=5.7e+02 Score=27.15 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=35.7
Q ss_pred CCceeEEEeCCCCEEEecCCCCCC-CCcccCCCCCCCCeecCCCCCCcEEE--EeecCCeeEEEecCCcEEEecCC
Q 019441 59 GCGFALATSESGKLITWGSADDEG-QSYLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~G-qlG~~~~~~~~~p~~i~~~~~~~i~~--Va~G~~hs~~lt~~G~vy~wG~n 131 (341)
-....++|+++|.+-.--.. ++- |-..+ .-..-+.+-.+..++. .+....+.+++|+.|++|..-..
T Consensus 497 ~E~v~vllS~~GyIKri~~~-~~~~~~~~~-----~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~ 566 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLD-EYRAQRRGG-----KGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVY 566 (805)
T ss_pred CCCEEEEEeCCCEEEEcchh-hhhhhcccC-----CCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhh
Confidence 33466789999988876544 211 10000 0000111111223333 33455668899999999998654
No 44
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.95 E-value=1e+02 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=27.3
Q ss_pred ccceeeecCCCCeEEEEEcCCCeEE--EEecCCcEEEEeC
Q 019441 201 LSPCLVTLNPGVKITKVAAGGRHTL--ILSDMGQVWGWGY 238 (341)
Q Consensus 201 ~~p~~v~~~~~~~i~~Ia~G~~h~~--aLt~~G~vy~wG~ 238 (341)
..++......+..|.|.+...+-++ ++.+++.||.|-+
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3455566666678888888877654 4568999999964
No 45
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=33.44 E-value=68 Score=23.15 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=23.5
Q ss_pred CcEEEEeec-CCeeEEEecCCcEEEecCCCCc
Q 019441 104 ASVVKAAAG-WAHCVSVTEAGEVYTWGWRECV 134 (341)
Q Consensus 104 ~~i~~Va~G-~~hs~~lt~~G~vy~wG~n~~g 134 (341)
..=..|+|. ....++|++||.||.-+--..|
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG 47 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSG 47 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTT
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCc
Confidence 455789999 8999999999999998854443
No 46
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=32.36 E-value=3.5e+02 Score=25.21 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=12.6
Q ss_pred CeEEEEecCCcEEEE
Q 019441 222 RHTLILSDMGQVWGW 236 (341)
Q Consensus 222 ~h~~aLt~~G~vy~w 236 (341)
.+.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 578888899999986
No 47
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=30.75 E-value=1.1e+02 Score=28.15 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=11.4
Q ss_pred EEEeCCCCEEEecCC
Q 019441 64 LATSESGKLITWGSA 78 (341)
Q Consensus 64 ~~lt~~G~vy~wG~n 78 (341)
+++.-+++||.+|..
T Consensus 166 ~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 166 VCVKLQNELYVFGGG 180 (323)
T ss_pred eEEEECCEEEEEcCC
Confidence 445567899999976
No 48
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=28.54 E-value=1.4e+02 Score=26.26 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=39.4
Q ss_pred CCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCC--eeEEEecCCcEEEecC
Q 019441 59 GCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGW 130 (341)
Q Consensus 59 g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~--hs~~lt~~G~vy~wG~ 130 (341)
...-.++.+++|.||.|=.| .+|++- ..+.........-|..++. -.++-..+|.++.|-.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n-~~g~~~----------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWN-LEGAHS----------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred cCceEEeecccceEEEecCC-ccchHH----------HhhhcccccceeccccccccceeEEeccCCceeeecc
Confidence 33467889999999999999 777651 1222222233344556666 5555667889998853
No 49
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=28.31 E-value=96 Score=22.42 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=27.9
Q ss_pred eeeccCCCceeEEEecC-CceeEEEeCCCCEEEecCCCCCCCC
Q 019441 43 PARLCGGDSWKDVCGGG-CGFALATSESGKLITWGSADDEGQS 84 (341)
Q Consensus 43 ~~~~~~~~~i~~i~~~g-~~h~~~lt~~G~vy~wG~n~~~Gql 84 (341)
|..++.+..=..|.| . ..-.++|+.||.||.=+-- +.|.+
T Consensus 9 Pa~i~~~~tS~~Vs~-~~~gs~ValS~dg~l~G~ai~-~sG~a 49 (81)
T PF03785_consen 9 PASINLGQTSISVSC-DVPGSYVALSQDGDLYGKAIV-NSGNA 49 (81)
T ss_dssp -SEEETT-SEEEEEE-SSTT-EEEEEETTEEEEEEE--BTTEE
T ss_pred cccccccccEEEEEe-cCCCcEEEEecCCEEEEEEEe-cCceE
Confidence 445555667788888 6 6677899999999998887 46654
No 50
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.68 E-value=1.1e+02 Score=16.81 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=13.7
Q ss_pred eEEEEeCCCCEEEeeCCC
Q 019441 300 HSAVVTDAGALLTFGWGL 317 (341)
Q Consensus 300 hs~~lt~~G~v~~wG~n~ 317 (341)
|.++++.+|+||..=++.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 677888889988876544
No 51
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=27.54 E-value=44 Score=25.32 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=19.2
Q ss_pred CCeEEEEeCCCCEEEeeCCCCCC
Q 019441 298 GRHSAVVTDAGALLTFGWGLYGQ 320 (341)
Q Consensus 298 ~~hs~~lt~~G~v~~wG~n~~GQ 320 (341)
...|-+|-.|++|.+||...+.|
T Consensus 79 DECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CceEEEEEECCEEEEEcHHhhhc
Confidence 45678888999999999987765
No 52
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=26.23 E-value=5e+02 Score=26.29 Aligned_cols=194 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred cccEEEeccCC-CCCCCCC-CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCe
Q 019441 19 ETVVYMWGYLP-GTSPEKS-PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPE 96 (341)
Q Consensus 19 ~g~v~~wG~n~-g~~g~~~-~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~ 96 (341)
++.||+-|.-+ |..-..+ ..+.|..-+.. .+-.+.. .+....+..-+|.||.-|..+....+ ..-+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~---~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~l--------~svE 399 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT---PVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKSL--------NSVE 399 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCcee---ccCCccC-ccccceeEEECCEEEEEecccccccc--------ccEE
Q ss_pred ecCCCCC--CcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccc
Q 019441 97 PFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGE 174 (341)
Q Consensus 97 ~i~~~~~--~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (341)
......+ ..+......+....+..-+|+||+.|
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G--------------------------------------------- 434 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG--------------------------------------------- 434 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEECCEEEEEc---------------------------------------------
Q ss_pred hhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccC
Q 019441 175 EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVP 254 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~ 254 (341)
+..+..+....-..+.+..................| +..-+++||+.|-..- -.........
T Consensus 435 ----------G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-----~a~~~~~iYvvGG~~~---~~~~~~VE~y 496 (571)
T KOG4441|consen 435 ----------GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-----VAVLNGKIYVVGGFDG---TSALSSVERY 496 (571)
T ss_pred ----------CcCCCccccceEEEEcCCCCceeecCCcccccccce-----EEEECCEEEEECCccC---CCccceEEEE
Q ss_pred CCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEee
Q 019441 255 TPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFG 314 (341)
Q Consensus 255 ~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG 314 (341)
.|+.-.- ..+......-.+..+..-++++|+-|
T Consensus 497 dp~~~~W---------------------------~~v~~m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 497 DPETNQW---------------------------TMVAPMTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred cCCCCce---------------------------eEcccCccccccccEEEECCEEEEEe
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=24.96 E-value=2.6e+02 Score=24.85 Aligned_cols=20 Identities=20% Similarity=-0.100 Sum_probs=16.4
Q ss_pred CCeEEEEecCCcEEEEeCCC
Q 019441 221 GRHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 221 ~~h~~aLt~~G~vy~wG~n~ 240 (341)
++-+..+..||+|+..|=..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccccceECCCCCEEEEeCcC
Confidence 56688899999999998544
No 54
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=24.11 E-value=1.7e+02 Score=31.17 Aligned_cols=101 Identities=15% Similarity=0.252 Sum_probs=52.6
Q ss_pred cccccCcccEEEeccCCCC----CCCCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCC--CCCCCcc
Q 019441 13 KMEECKETVVYMWGYLPGT----SPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD--DEGQSYL 86 (341)
Q Consensus 13 ~~~~~~~g~v~~wG~n~g~----~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~--~~GqlG~ 86 (341)
..=++.+.+++.|-.|.++ ..+-.+......+--|....+ |. .-.|.+++...-++|..|-.. ..|.|-.
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantF--vs--~i~hlL~vAT~~e~~ilgvs~d~~T~Els~ 170 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTF--VS--RISHLLFVATEKEVMILGVSKDTKTGELSL 170 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCccc--HH--hhhhhhhhhhhheeeEEEEEeccccceeEE
Confidence 3446788999999887332 222222222222222321112 22 225999999999999988752 1222211
Q ss_pred cCCCCCCCCeecCCCCCCcEEEEeecCCe-eEEEecCCcEEEecCCC
Q 019441 87 TSGKHGETPEPFPLPTEASVVKAAAGWAH-CVSVTEAGEVYTWGWRE 132 (341)
Q Consensus 87 ~~~~~~~~p~~i~~~~~~~i~~Va~G~~h-s~~lt~~G~vy~wG~n~ 132 (341)
-++ .-.+.|. |-+- +++..++|++|--|.+.
T Consensus 171 fnT--------------gl~vsvq-GinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 171 FNT--------------GLVVSVQ-GINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred Eec--------------ceEEecc-CceeEEEEeccCCcEEEecCCC
Confidence 111 1122222 3333 34445569999888765
No 55
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.08 E-value=8.9e+02 Score=25.75 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=32.9
Q ss_pred ceeEEEeCCCCEEEecCCCCCCC--C-cccCCCCCCCCeecCCCCCCcEEE--EeecCCeeEEEecCCcEEEec
Q 019441 61 GFALATSESGKLITWGSADDEGQ--S-YLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWG 129 (341)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n~~~Gq--l-G~~~~~~~~~p~~i~~~~~~~i~~--Va~G~~hs~~lt~~G~vy~wG 129 (341)
...++|+++|.+-.--.. ++-. . +.+.. -+.+-.+..++. ++...++.+++|+.|++|..-
T Consensus 497 ~~~vllS~~GyIKri~~~-~~~~~~~~~~g~s-------~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~ 562 (800)
T TIGR01063 497 NVVVTLSHNGYVKRVPVS-AYRLQKRGGKGVS-------GADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLK 562 (800)
T ss_pred eEEEEEcCCCEEEecchh-hhhhhcccCcCcc-------ccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEE
Confidence 356788999988765443 2111 1 11100 111112223333 334556688999999999984
No 56
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=23.47 E-value=4.3e+02 Score=23.45 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=40.7
Q ss_pred EEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCe------ecCCCCCCcEE-EEeecCCeeEEEecCCcEEE
Q 019441 55 VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPE------PFPLPTEASVV-KAAAGWAHCVSVTEAGEVYT 127 (341)
Q Consensus 55 i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~------~i~~~~~~~i~-~Va~G~~hs~~lt~~G~vy~ 127 (341)
+...-|.-++.+..||+|+..|.. .. ...+..|. ++..+...... ....-.+=.+.|..+|+||.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~-~~-------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi 185 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGS-NN-------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFI 185 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCc-CC-------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEE
Confidence 566567788999999999999987 31 11122222 11111111111 11223444678889999999
Q ss_pred ecCCC
Q 019441 128 WGWRE 132 (341)
Q Consensus 128 wG~n~ 132 (341)
++.+.
T Consensus 186 ~an~~ 190 (243)
T PF07250_consen 186 FANRG 190 (243)
T ss_pred EEcCC
Confidence 98764
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.44 E-value=6.3e+02 Score=23.82 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCceeEEEecCCcee-EEEeCCCC-EEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecC-CeeEEEecCCc
Q 019441 48 GGDSWKDVCGGGCGFA-LATSESGK-LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-AHCVSVTEAGE 124 (341)
Q Consensus 48 ~~~~i~~i~~~g~~h~-~~lt~~G~-vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~-~hs~~lt~~G~ 124 (341)
..+.+..|..++.-|. ++.+.||+ +|..+.. |.+ ..+.+.....++.|..|. -+.++++.||+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd---g~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD---GTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGK 90 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT---SEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC---CeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence 3445666666443365 45678887 8886432 332 355555667788888887 56888999998
Q ss_pred EEEec
Q 019441 125 VYTWG 129 (341)
Q Consensus 125 vy~wG 129 (341)
...-+
T Consensus 91 ~~~v~ 95 (369)
T PF02239_consen 91 YVYVA 95 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55444
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.10 E-value=5.5e+02 Score=22.97 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=50.7
Q ss_pred CcccEEEeccCCCCCCCC--CCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCC
Q 019441 18 KETVVYMWGYLPGTSPEK--SPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETP 95 (341)
Q Consensus 18 ~~g~v~~wG~n~g~~g~~--~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p 95 (341)
-+..|++|--+.|+.-.+ ...-+-..+++.. .-.-|++|+. |-.|-.|.+- + ..+
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~Sgsf--------D~s~r~wDCR-S------------~s~ 135 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSF--------DSSVRLWDCR-S------------RSF 135 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceeeEEEecC--cceEEEeccc--------cceeEEEEcc-c------------CCC
Confidence 346688887765543222 1111222233332 2222333232 4556667665 1 345
Q ss_pred eecCCCCC--CcEEEEeecCCeeEEEecCCcEEEec
Q 019441 96 EPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWG 129 (341)
Q Consensus 96 ~~i~~~~~--~~i~~Va~G~~hs~~lt~~G~vy~wG 129 (341)
+|++++.+ ..|.+|.....-.++=+.||.|-++-
T Consensus 136 ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 136 EPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred CccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 67766654 55888888888888889999887764
No 59
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.04 E-value=3.2e+02 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCeEEEEecCCcEEEEe
Q 019441 212 VKITKVAAGGRHTLILSDMGQVWGWG 237 (341)
Q Consensus 212 ~~i~~Ia~G~~h~~aLt~~G~vy~wG 237 (341)
..+.+|+.-....+|++..|++|.+-
T Consensus 200 ~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 200 YHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred ceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 46788888888888888888888876
No 60
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=22.54 E-value=1.8e+02 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.4
Q ss_pred EEcCCCeEEEEecCCcEEEEeCCCCCccCC
Q 019441 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGL 246 (341)
Q Consensus 217 Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~ 246 (341)
|.-+..-.++.+.+|.||+|=.|.+|++-.
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d 95 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSD 95 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHH
Confidence 334455677889999999999998888743
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.40 E-value=5.1e+02 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.734 Sum_probs=11.2
Q ss_pred CCEEEecCCCCCCCC
Q 019441 70 GKLITWGSADDEGQS 84 (341)
Q Consensus 70 G~vy~wG~n~~~Gql 84 (341)
|++|.|-...+.|.+
T Consensus 129 g~~F~~DSG~SvGei 143 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEI 143 (603)
T ss_pred eEEEEecCCCcccee
Confidence 569999887666665
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.70 E-value=6.3e+02 Score=22.79 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=16.4
Q ss_pred cCCeeEEEecCCcEEEecCC
Q 019441 112 GWAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 112 G~~hs~~lt~~G~vy~wG~n 131 (341)
|.=|++=.+-+|++|+-|+-
T Consensus 268 gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred CceEEEEECCCCceeeccCC
Confidence 55688888999999998864
No 63
>PF13854 Kelch_5: Kelch motif
Probab=20.60 E-value=1.1e+02 Score=18.57 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=13.0
Q ss_pred CCeeEEEecCCcEEEecCC
Q 019441 113 WAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 113 ~~hs~~lt~~G~vy~wG~n 131 (341)
..|++++. +++||.+|-.
T Consensus 6 ~~hs~~~~-~~~iyi~GG~ 23 (42)
T PF13854_consen 6 YGHSAVVV-GNNIYIFGGY 23 (42)
T ss_pred cceEEEEE-CCEEEEEcCc
Confidence 36777765 5899999843
No 64
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=20.39 E-value=5.5e+02 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCCceeEEEecCCceeEEEeCCCCEEEecCC
Q 019441 48 GGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (341)
Q Consensus 48 ~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n 78 (341)
.+.+|.+++. -..| ++..-||+||.|=-+
T Consensus 61 hdgpiy~~~f-~d~~-Lls~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 61 HDGPIYYLAF-HDDF-LLSGGDGLVYGWEWN 89 (325)
T ss_pred cCCCeeeeee-ehhh-eeeccCceEEEeeeh
Confidence 3678888887 5445 666778999999988
Done!