Query 019441
Match_columns 341
No_of_seqs 132 out of 1591
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 16:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2.3E-49 8E-54 378.0 26.0 310 8-325 23-365 (406)
2 1a12_A RCC1, regulator of chro 100.0 4.1E-47 1.4E-51 363.3 26.4 306 9-325 16-373 (413)
3 3kci_A Probable E3 ubiquitin-p 100.0 1.4E-47 4.7E-52 363.8 22.9 234 8-324 114-352 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 7.5E-48 2.6E-52 365.7 19.1 257 9-324 9-300 (389)
5 3mvd_K Regulator of chromosome 100.0 2.1E-46 7.1E-51 359.5 28.0 283 7-324 81-381 (423)
6 3mvd_K Regulator of chromosome 100.0 1.1E-45 3.6E-50 354.6 27.7 257 7-325 30-330 (423)
7 3of7_A Regulator of chromosome 100.0 2.3E-45 7.9E-50 357.0 25.4 287 7-325 73-413 (473)
8 3of7_A Regulator of chromosome 100.0 3E-45 1E-49 356.1 24.2 259 11-325 20-349 (473)
9 4d9s_A UVB-resistance protein 100.0 3.2E-42 1.1E-46 328.7 24.1 268 49-325 15-313 (406)
10 1a12_A RCC1, regulator of chro 100.0 7.3E-42 2.5E-46 326.9 21.7 296 8-310 66-412 (413)
11 3qhy_B Beta-lactamase inhibito 100.0 4.1E-40 1.4E-44 299.0 20.0 212 8-324 31-253 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 7.8E-39 2.7E-43 290.5 20.0 204 20-326 2-216 (282)
13 4gbf_A Phikz131; 7-bladed beta 95.9 0.015 5.3E-07 50.0 6.6 72 212-321 309-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 94.8 0.059 2E-06 46.4 6.6 68 51-133 310-377 (400)
15 3no0_A DNA gyrase subunit A; D 86.5 16 0.00053 31.8 15.7 72 48-130 22-97 (276)
16 1k3i_A Galactose oxidase precu 86.4 26 0.00089 34.3 17.6 57 13-78 247-306 (656)
17 1suu_A DNA gyrase subunit A; t 85.0 20 0.00068 31.7 19.3 86 45-132 42-133 (312)
18 2zwa_A Leucine carboxyl methyl 84.6 17 0.00059 36.0 14.4 19 60-78 491-509 (695)
19 3uc1_A DNA gyrase subunit A; D 80.5 31 0.0011 30.7 16.2 81 48-130 40-126 (327)
20 1p22_A F-BOX/WD-repeat protein 74.1 50 0.0017 29.8 22.2 68 49-130 173-240 (435)
21 2zwa_A Leucine carboxyl methyl 74.1 72 0.0024 31.5 19.2 65 60-130 441-508 (695)
22 1wp5_A Topoisomerase IV; broke 72.0 53 0.0018 29.1 18.4 83 46-130 35-123 (323)
23 1gxr_A ESG1, transducin-like e 69.6 51 0.0017 27.9 20.7 112 9-129 10-125 (337)
24 1zi0_A DNA gyrase subunit A; b 66.8 66 0.0023 28.2 17.4 83 45-129 37-125 (307)
25 1p22_A F-BOX/WD-repeat protein 65.5 77 0.0026 28.5 22.2 71 49-130 213-283 (435)
26 3l6v_A GYRA, DNA gyrase subuni 58.9 1E+02 0.0036 27.8 18.2 88 42-131 38-131 (370)
27 1zvt_A Topoisomerase IV subuni 58.7 85 0.0029 26.7 12.4 85 42-130 25-112 (256)
28 2ovr_B FBW7, F-BOX/WD repeat p 55.3 1.2E+02 0.004 27.3 21.8 68 49-130 159-226 (445)
29 1k3i_A Galactose oxidase precu 54.8 24 0.00082 34.5 7.1 59 62-130 246-305 (656)
30 2ovr_B FBW7, F-BOX/WD repeat p 52.7 1.3E+02 0.0044 27.0 21.0 28 213-240 321-348 (445)
31 1zvu_A Topoisomerase IV subuni 45.0 2.4E+02 0.0083 27.9 12.3 79 47-129 500-581 (716)
32 1wp5_A Topoisomerase IV; broke 43.4 1.7E+02 0.0059 25.7 14.0 26 107-132 44-69 (323)
33 3uc1_A DNA gyrase subunit A; D 37.1 2.2E+02 0.0074 25.1 23.0 107 16-131 59-175 (327)
34 3no0_A DNA gyrase subunit A; D 36.0 2.1E+02 0.007 24.5 19.8 79 46-133 64-147 (276)
35 2uvk_A YJHT; unknown function, 33.5 2.3E+02 0.008 24.4 9.8 17 221-238 110-126 (357)
36 3p6j_A De novo designed beta-t 30.2 1.9E+02 0.0063 22.2 11.0 68 48-128 28-97 (142)
37 4aow_A Guanine nucleotide-bind 29.4 1.7E+02 0.0057 24.6 7.8 76 50-129 257-334 (340)
38 3p6j_A De novo designed beta-t 29.1 1.3E+02 0.0045 23.1 6.1 66 50-127 72-138 (142)
39 3l6v_A GYRA, DNA gyrase subuni 27.5 3.4E+02 0.012 24.4 14.0 64 61-132 8-76 (370)
40 1suu_A DNA gyrase subunit A; t 27.0 3.1E+02 0.011 23.8 21.5 84 43-133 93-182 (312)
41 3ii7_A Kelch-like protein 7; p 26.2 2.9E+02 0.0099 23.1 12.9 17 61-78 48-64 (306)
42 3dsm_A Uncharacterized protein 25.1 1.3E+02 0.0046 25.8 6.4 94 12-127 87-187 (328)
43 2dg1_A DRP35, lactonase; beta 25.0 3E+02 0.01 23.1 8.7 17 12-28 48-64 (333)
44 3sfz_A APAF-1, apoptotic pepti 24.4 6E+02 0.021 26.2 17.0 22 293-314 1225-1246(1249)
45 1xip_A Nucleoporin NUP159; bet 24.3 3.6E+02 0.012 24.3 9.2 27 214-241 90-116 (388)
46 1sq9_A Antiviral protein SKI8; 24.0 3.4E+02 0.012 23.2 11.9 79 49-130 233-320 (397)
47 3q7x_A De novo designed beta-t 21.4 1.3E+02 0.0045 22.7 4.8 66 51-128 48-114 (132)
48 3sfz_A APAF-1, apoptotic pepti 20.8 7E+02 0.024 25.7 17.0 30 49-78 1044-1073(1249)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.3e-49 Score=378.03 Aligned_cols=310 Identities=23% Similarity=0.297 Sum_probs=244.9
Q ss_pred hhhhccccccCcccEEEeccC-CCCCCCCCCCCC--CceeeccCCCceeEEEecCCceeEEEeCCC-CEEEecCCCCCCC
Q 019441 8 REENEKMEECKETVVYMWGYL-PGTSPEKSPILS--PIPARLCGGDSWKDVCGGGCGFALATSESG-KLITWGSADDEGQ 83 (341)
Q Consensus 8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~~~~--p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G-~vy~wG~n~~~Gq 83 (341)
|-..+.++|++++.||+||.| .|+||....... |+++..+...+|++|+| |..|+++|++++ +||+||.| .+||
T Consensus 23 ~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~-G~~ht~al~~~gg~v~~wG~n-~~Gq 100 (406)
T 4d9s_A 23 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC-GADHTVAYSQSGMEVYSWGWG-DFGR 100 (406)
T ss_dssp ECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTTTEEEEEECC-GGGT
T ss_pred cCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe-CcceEEEEECCCCEEEEEcCC-CCcC
Confidence 556788999999999999999 899997654444 44455556779999999 668999999886 99999999 9999
Q ss_pred CcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcc
Q 019441 84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE 163 (341)
Q Consensus 84 lG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
||.++......|.+++.+...+|++|+||..|+++|+++|+||+||.|.+||||........ .+... .......+.
T Consensus 101 LG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~---~p~~v-~~~~~~~i~ 176 (406)
T 4d9s_A 101 LGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSL---VPQKI-QAFEGIRIK 176 (406)
T ss_dssp TCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEE---EEEEC-GGGTTCCEE
T ss_pred CCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcc---cceEe-cccCCCcEE
Confidence 99998877778888888888899999999999999999999999999999999976532111 00000 001112233
Q ss_pred cCCCCCccccchhhcceeeeccccCCCCC-CCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCC
Q 019441 164 QAPPSDKRAGEEVVKRRKTSSAREESENP-ASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~G 242 (341)
.+.|... +...+...+.++.|+.+.... ..++......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 177 ~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~G 255 (406)
T 4d9s_A 177 MVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255 (406)
T ss_dssp EEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred EEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCC
Confidence 3444333 444556667777777654433 34555667788888888778999999999999999999999999999999
Q ss_pred ccCCCCCCCccCCCeeecccc-----cccCCCCCceEeec-CcccccCCCC----------------------CCcEEEE
Q 019441 243 QLGLGSRIKMVPTPHLIPCLE-----HAASGKDRPLLVRQ-GSVNSSGKAG----------------------RSYVKEI 294 (341)
Q Consensus 243 qLG~~~~~~~~~~P~~i~~~~-----~~~~g~~~~~~~~~-~~~~~~~~~~----------------------~~~i~~V 294 (341)
|||.+.. .....|++++.+. .++||..|+++++. |+++.++... ..+|++|
T Consensus 256 qlG~g~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v 334 (406)
T 4d9s_A 256 QLGHGDL-EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV 334 (406)
T ss_dssp TTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred CCCCCCC-cCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence 9999876 4566788886544 46899999999987 7776655432 1479999
Q ss_pred eeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 295 ACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 295 ~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
+||.+|+++|+++|+||+||+|.+||||++.
T Consensus 335 a~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 335 SCGWRHTLAVTERNNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EeCCCeEEEEeCCCCEEEecCCCCCccCCCC
Confidence 9999999999999999999999999998743
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.1e-47 Score=363.34 Aligned_cols=306 Identities=20% Similarity=0.241 Sum_probs=231.0
Q ss_pred hhhccccccCcccEEEeccC-CCCCCCCCCCC-CCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcc
Q 019441 9 EENEKMEECKETVVYMWGYL-PGTSPEKSPIL-SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYL 86 (341)
Q Consensus 9 ~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~~~-~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~ 86 (341)
...+.++++++|.||+||.| .|+||...... .+.|..++...+|++|+| |..|+++|+++|+||+||.| .+||||+
T Consensus 16 ~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~-G~~hs~~l~~~G~v~~wG~n-~~GqLG~ 93 (413)
T 1a12_A 16 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA-GGMHTVCLSKSGQVYSFGCN-DEGALGR 93 (413)
T ss_dssp CCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEE-CSSEEEEEETTSCEEEEECC-TTSTTCS
T ss_pred ccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEe-CCCeEEEEcCCCCEEEEECC-CCCCCCC
Confidence 35688999999999999999 89999775432 234444444579999999 66899999999999999999 9999998
Q ss_pred cCCC--CCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecC--CCCcCCCCccccCCCCCCcccCCCCCCCCCCc
Q 019441 87 TSGK--HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (341)
Q Consensus 87 ~~~~--~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
+... ....|.++.+ ..+|++|+||.+|+++|+++|+||+||. |.+||||.......... +.. ......+
T Consensus 94 ~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~--P~~---v~~~~~i 166 (413)
T 1a12_A 94 DTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMV--PVQ---VQLDVPV 166 (413)
T ss_dssp CCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEE--EEE---ECCSSCE
T ss_pred CCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccC--CEE---ecCCCCE
Confidence 8753 3456777754 3589999999999999999999999999 89999996543211100 110 0122334
Q ss_pred ccCCCCCccccchhhcceeeeccccCCCCCCCCC-C-----------cccccceeeecC-----CCCeEEEEEcCCCeEE
Q 019441 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGD-E-----------FFTLSPCLVTLN-----PGVKITKVAAGGRHTL 225 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~p~~v~~~-----~~~~i~~Ia~G~~h~~ 225 (341)
.++.|... +...+...++++.|+.+........ . .....|+.+... ...+|++|+||.+|++
T Consensus 167 ~~ia~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~ 245 (413)
T 1a12_A 167 VKVASGND-HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 245 (413)
T ss_dssp EEEEECSS-EEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEE
T ss_pred EEEEecCc-eEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEE
Confidence 44555443 3445566677777776654432211 1 122466655542 3468999999999999
Q ss_pred EEecCCcEEEEeCCCCCccCCCCCCCccCCCeeecccc-------cccCCCCCceEeec-CcccccCCCC----------
Q 019441 226 ILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLE-------HAASGKDRPLLVRQ-GSVNSSGKAG---------- 287 (341)
Q Consensus 226 aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~-------~~~~g~~~~~~~~~-~~~~~~~~~~---------- 287 (341)
||+++|+||+||.|.+||||.+.. .....|+.|+.+. .++||..|+++++. |+++.++...
T Consensus 246 alt~~G~v~~wG~n~~gqLG~~~~-~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 246 AISHEGHVYGFGLSNYHQLGTPGT-ESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEETTCCEEEEECCTTSTTSCSSC-SCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEeCCCCEEEEeCCCCcCCCCCCC-CcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999887 4557888886543 46899999999987 7776555421
Q ss_pred -----------CCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 288 -----------RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 288 -----------~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
...|++|+||.+|+++|+++|+||+||.|++||||++.
T Consensus 325 ~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~ 373 (413)
T 1a12_A 325 EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ 373 (413)
T ss_dssp CCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred ccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCC
Confidence 03799999999999999999999999999999997743
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=363.84 Aligned_cols=234 Identities=24% Similarity=0.344 Sum_probs=206.5
Q ss_pred hhhhccccccCcccEEEeccC-CCCCCCCC--CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCC
Q 019441 8 REENEKMEECKETVVYMWGYL-PGTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (341)
Q Consensus 8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~--~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gql 84 (341)
|-..+.++|+++|+||+||.| .|++|... ....|+++..+.+.+|++|+| |..|+++|+++|+||+||.| .+|||
T Consensus 114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~-G~~hs~alt~~G~v~~wG~n-~~GqL 191 (389)
T 3kci_A 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA-GGAHSACVTAAGDLYTWGKG-RYGRL 191 (389)
T ss_dssp TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTSCEEEEECC-GGGTT
T ss_pred cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe-CcCeEEEEeCCCeEEEeCCC-CCCCc
Confidence 456788999999999999999 89988664 344566666666789999999 77899999999999999999 99999
Q ss_pred cccCCCCCCCCeecCCCCCCcEEEEeecC--CeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCc
Q 019441 85 YLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (341)
Q Consensus 85 G~~~~~~~~~p~~i~~~~~~~i~~Va~G~--~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
|.++......|.+++.+...+|++|+||. .|+++|+++|+||+||.|.+||||...
T Consensus 192 G~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~---------------------- 249 (389)
T 3kci_A 192 GHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG---------------------- 249 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSS----------------------
T ss_pred CCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCC----------------------
Confidence 99988888888888888889999999995 899999999999999999999999542
Q ss_pred ccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCC
Q 019441 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~G 242 (341)
......|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+|
T Consensus 250 ----------------------------------~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~G 295 (389)
T 3kci_A 250 ----------------------------------SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH 295 (389)
T ss_dssp ----------------------------------CCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGG
T ss_pred ----------------------------------CCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Confidence 1134567778777778899999999999999999999999999999
Q ss_pred ccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCC
Q 019441 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRM 322 (341)
Q Consensus 243 qLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG 322 (341)
|||.+.. .....|++++.+.. .+|++|+||.+|+++|+++|+||+||+|++||||
T Consensus 296 qLG~g~~-~~~~~P~~v~~l~~------------------------~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG 350 (389)
T 3kci_A 296 RLGHGSD-DHVRRPRQVQGLQG------------------------KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350 (389)
T ss_dssp TTCSSSC-CCEEEEEECGGGTT------------------------CCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred CCCCCCC-ccccCCeEeccCCC------------------------CCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCC
Confidence 9999887 56678999987765 6899999999999999999999999999999997
Q ss_pred cc
Q 019441 323 AK 324 (341)
Q Consensus 323 ~~ 324 (341)
.+
T Consensus 351 ~g 352 (389)
T 3kci_A 351 DG 352 (389)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-48 Score=365.66 Aligned_cols=257 Identities=25% Similarity=0.376 Sum_probs=206.3
Q ss_pred hhhccccccCcccEEEeccC-CCCCCCC--CCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCc
Q 019441 9 EENEKMEECKETVVYMWGYL-PGTSPEK--SPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85 (341)
Q Consensus 9 ~~~~~~~~~~~g~v~~wG~n-~g~~g~~--~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (341)
++-+..+++++|+||+||.| .|+||.. .....|+++..+...+|++|++ |..|+++|+++|+||+||.| .+||||
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~-G~~~~~~l~~~G~v~~wG~n-~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG-GEQTLFAVTADGKLYATGYG-AGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE-ETTEEEEEETTSCEEEEECC-GGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe-CCCeEEEEcCCCcEEEEECC-CCCCCC
Confidence 45567899999999999999 8999954 4455677777777789999999 77899999999999999999 999999
Q ss_pred ccCCCCCCCCeecCCCCCC--cEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcc
Q 019441 86 LTSGKHGETPEPFPLPTEA--SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE 163 (341)
Q Consensus 86 ~~~~~~~~~p~~i~~~~~~--~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
.+.......|.+++.+... ++++|+||.+|+++|+++|+||+||.|.+||||...
T Consensus 87 ~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~----------------------- 143 (389)
T 3kci_A 87 IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN----------------------- 143 (389)
T ss_dssp SSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS-----------------------
T ss_pred CCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC-----------------------
Confidence 9987777778887766554 457899999999999999999999999999999542
Q ss_pred cCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCc
Q 019441 164 QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQ 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~Gq 243 (341)
......|+.+..+.+.+|++|+||.+|++||+++|+||+||.|.+||
T Consensus 144 ---------------------------------~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~Gq 190 (389)
T 3kci_A 144 ---------------------------------RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190 (389)
T ss_dssp ---------------------------------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGT
T ss_pred ---------------------------------CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCC
Confidence 11345677888777789999999999999999999999999999999
Q ss_pred cCCCCCCCccCCCeeecccc-----cccCCC--CCceEeec-CcccccCCC----------------------CCCcEEE
Q 019441 244 LGLGSRIKMVPTPHLIPCLE-----HAASGK--DRPLLVRQ-GSVNSSGKA----------------------GRSYVKE 293 (341)
Q Consensus 244 LG~~~~~~~~~~P~~i~~~~-----~~~~g~--~~~~~~~~-~~~~~~~~~----------------------~~~~i~~ 293 (341)
||.+.. .....|+.++.+. .++||. .++++++. |+++.++.. .+..|++
T Consensus 191 LG~~~~-~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 269 (389)
T 3kci_A 191 LGHSDS-EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269 (389)
T ss_dssp TCSSSC-CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEE
T ss_pred cCCCCC-cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEE
Confidence 999887 4566788886544 358885 68888766 666655432 1246999
Q ss_pred EeeCCCeEEEEeCCCCEEEeeCCCCCCCCcc
Q 019441 294 IACGGRHSAVVTDAGALLTFGWGLYGQRMAK 324 (341)
Q Consensus 294 V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~ 324 (341)
|+||.+|+++|+++|+||+||+|.+||||++
T Consensus 270 v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 300 (389)
T 3kci_A 270 VECGSQFSVALTKSGAVYTWGKGDYHRLGHG 300 (389)
T ss_dssp EEEETTEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Confidence 9999999999999999999999999999874
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-46 Score=359.49 Aligned_cols=283 Identities=22% Similarity=0.232 Sum_probs=209.0
Q ss_pred chhhhccccccCcccEEEeccC-CCCCCCCCC----CCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecC--CC
Q 019441 7 KREENEKMEECKETVVYMWGYL-PGTSPEKSP----ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS--AD 79 (341)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~----~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~--n~ 79 (341)
.|...+.++|+++|+||+||.| .|+||.... ...|+++. ...+|++|+| |..|+++|+++|+||+||. |
T Consensus 81 a~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~--~~~~i~~va~-G~~hs~al~~~G~v~~wG~~~n- 156 (423)
T 3mvd_K 81 SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISA-GDSHSACLLEDGRVFAWGSFRD- 156 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC--CSSCEEEEEE-CSSEEEEEETTSCEEEEECEEC-
T ss_pred eeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc--CCCCEEEEEc-CcCeEEEEeCCCeEEEEeCCCC-
Confidence 3556788999999999999999 899997643 34455554 4458999999 7789999999999999999 8
Q ss_pred CCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCc--ccC--CCC
Q 019441 80 DEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSF--QKD--STG 155 (341)
Q Consensus 80 ~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~--~~~--~~~ 155 (341)
.+||||.+.... .+.|++++...+|++|+||.+|+++|+++|+||+||.|.+||||............ ... .+.
T Consensus 157 ~~GqlG~~~~~~--~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~ 234 (423)
T 3mvd_K 157 SHGNMGLTIDGN--KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234 (423)
T ss_dssp SSSEEESBTTBC--EEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCE
T ss_pred CCCCcCcCCCCC--CceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCe
Confidence 999999876554 36667777788999999999999999999999999999999999865321110000 000 000
Q ss_pred ---CCCCCCcccCCCCCccccchh-hcceeeeccccCCCCCCCC-C--CcccccceeeecCCCCeEEEEEcCCCeEEEEe
Q 019441 156 ---KQSALPTEQAPPSDKRAGEEV-VKRRKTSSAREESENPASG-D--EFFTLSPCLVTLNPGVKITKVAAGGRHTLILS 228 (341)
Q Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~--~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt 228 (341)
......+..+.+.... .... ...+.+..|+.+....... . ......|..+. ..+|++|+||.+|++||+
T Consensus 235 ~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt 310 (423)
T 3mvd_K 235 QLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILT 310 (423)
T ss_dssp EECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEE
T ss_pred EEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEe
Confidence 0000111112222111 1111 3455666666554433221 2 22334555544 248999999999999999
Q ss_pred cCCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCC
Q 019441 229 DMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAG 308 (341)
Q Consensus 229 ~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G 308 (341)
++|+||+||.|.+||||.+........|+.++.+. ..|++|+||.+|+++|+++|
T Consensus 311 ~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~-------------------------~~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 311 TDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-------------------------EKIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp TTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCC-------------------------SCEEEEEEETTEEEEEETTS
T ss_pred CCCcEEEEECCCCCCCCCCCccccccCceEeccCC-------------------------CCEEEEEcCCCeEEEEcCCC
Confidence 99999999999999999998766667888887654 36999999999999999999
Q ss_pred CEEEeeCCCCCCCCcc
Q 019441 309 ALLTFGWGLYGQRMAK 324 (341)
Q Consensus 309 ~v~~wG~n~~GQLG~~ 324 (341)
+||+||.|.+||||++
T Consensus 366 ~v~~wG~n~~GqLG~g 381 (423)
T 3mvd_K 366 KLYSWGSGVNNQLGVG 381 (423)
T ss_dssp CEEEEECCTTSCSSSS
T ss_pred CEEEECCCCCCCCCCC
Confidence 9999999999999774
No 6
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-45 Score=354.57 Aligned_cols=257 Identities=19% Similarity=0.215 Sum_probs=206.1
Q ss_pred chhhhccccccCcccEEEeccC-CCCCCCCCC-CCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCC
Q 019441 7 KREENEKMEECKETVVYMWGYL-PGTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (341)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~-~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~Gql 84 (341)
+|...+.++++++|+||+||.| .|+||.... ...+.|..++...+|++|+| |..|+++|+++|+||+||.| .+|||
T Consensus 30 a~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~-G~~h~~~l~~~G~v~~wG~n-~~GqL 107 (423)
T 3mvd_K 30 AFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA-GGMHNLVLTKSGDIYSFGCN-DEGAL 107 (423)
T ss_dssp CCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE-CSSEEEEEETTSCEEEEECC-SSSTT
T ss_pred ecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee-CCCeEEEEeCCCeEEEeECC-CCcCC
Confidence 4566788999999999999999 899997753 22334555555568999999 66899999999999999999 99999
Q ss_pred cccCCCC--CCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecC--CCCcCCCCccccCCCCCCcccCCCCCCCCC
Q 019441 85 YLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSAL 160 (341)
Q Consensus 85 G~~~~~~--~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
|++.... ...|.++. ...+|++|+||.+|+++|+++|+||+||. |.+||||....
T Consensus 108 G~~~~~~~~~~~P~~v~--~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~------------------- 166 (423)
T 3mvd_K 108 GRDTSEDGSESKPDLID--LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID------------------- 166 (423)
T ss_dssp CSCCCSTTSSSSCEECC--CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT-------------------
T ss_pred CCCCcCCccccCCeEEc--CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC-------------------
Confidence 9987665 34555555 44689999999999999999999999998 99999985321
Q ss_pred CcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCC
Q 019441 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~ 240 (341)
...|+++..+.+.+|++|+||.+|++||+++|+||+||.|.
T Consensus 167 ---------------------------------------~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 167 ---------------------------------------GNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp ---------------------------------------BCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred ---------------------------------------CCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence 11233444456679999999999999999999999999999
Q ss_pred CCccCCCCCC----------CccCCCeeecc-----cccccCCCCCceEe--ecCcccccCCCC----------------
Q 019441 241 EGQLGLGSRI----------KMVPTPHLIPC-----LEHAASGKDRPLLV--RQGSVNSSGKAG---------------- 287 (341)
Q Consensus 241 ~GqLG~~~~~----------~~~~~P~~i~~-----~~~~~~g~~~~~~~--~~~~~~~~~~~~---------------- 287 (341)
+||||.+... .....|..+.. +..++||..+++++ ..+.++.++...
T Consensus 208 ~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 287 (423)
T 3mvd_K 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALT 287 (423)
T ss_dssp TSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEE
T ss_pred CCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeee
Confidence 9999997652 24457777753 34468899988888 335555443221
Q ss_pred -----CCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 288 -----RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 288 -----~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
...|++|+||.+|+++|+++|+||+||+|++||||++.
T Consensus 288 p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~ 330 (423)
T 3mvd_K 288 PIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330 (423)
T ss_dssp EEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSS
T ss_pred eEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCC
Confidence 24799999999999999999999999999999998754
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-45 Score=356.98 Aligned_cols=287 Identities=20% Similarity=0.239 Sum_probs=214.7
Q ss_pred chhhhccccccCcccEEEeccC-CCCCCCCCCC-------------------------CCCceeec---c---CCCceeE
Q 019441 7 KREENEKMEECKETVVYMWGYL-PGTSPEKSPI-------------------------LSPIPARL---C---GGDSWKD 54 (341)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~~-------------------------~~p~~~~~---~---~~~~i~~ 54 (341)
.|-..+.++|+++|+||+||.| .|+||..+.. ..|++++. + .+.+|++
T Consensus 73 a~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~ 152 (473)
T 3of7_A 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQ 152 (473)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEE
T ss_pred EeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEE
Confidence 3556788999999999999999 8999976432 34666552 2 3689999
Q ss_pred EEecCCceeEEEeCCCCEEEecCC-CCCCCCcccCCCC--CCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCC
Q 019441 55 VCGGGCGFALATSESGKLITWGSA-DDEGQSYLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 55 i~~~g~~h~~~lt~~G~vy~wG~n-~~~GqlG~~~~~~--~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n 131 (341)
|+| |..|+++|+++|+||+||.| ...||||...... ...|..++.+...+|++|+||.+|+++|+++|+||+||.|
T Consensus 153 va~-G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n 231 (473)
T 3of7_A 153 LAA-TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNG 231 (473)
T ss_dssp EEE-CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEc-cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCC
Confidence 999 77899999999999999983 1789999865543 3456666666667899999999999999999999999999
Q ss_pred CCcCCCCccccCCC-CCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCCC-CCCC----ccccccee
Q 019441 132 ECVPSAKVTRDFGS-AGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA-SGDE----FFTLSPCL 205 (341)
Q Consensus 132 ~~gqlG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~p~~ 205 (341)
.+||||........ ....+. ......+.++.|... ....++..++++.|+.+..... .++. .....|+.
T Consensus 232 ~~GqLG~~~~~~~~~~~~~p~----~~~~~~v~~Ia~G~~-hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~ 306 (473)
T 3of7_A 232 QQNQLGRKVMERFRLKTLDPR----PFGLRHVKYIASGEN-HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKR 306 (473)
T ss_dssp TTSTTSSCCCGGGTTTTCSCE----ECSCCSEEEEEECSS-EEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEE
T ss_pred CCCCCCCCccccccccccCce----ecCCcceEEEecCCC-eEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccc
Confidence 99999976432110 000000 001123334444433 3445556677777776544432 2221 24567888
Q ss_pred eecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCC-------------CccCCCeeecccccccCCCCCc
Q 019441 206 VTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRI-------------KMVPTPHLIPCLEHAASGKDRP 272 (341)
Q Consensus 206 v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~-------------~~~~~P~~i~~~~~~~~g~~~~ 272 (341)
+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+... .....|..++.+
T Consensus 307 v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---------- 376 (473)
T 3of7_A 307 LALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---------- 376 (473)
T ss_dssp CCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----------
T ss_pred ccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC----------
Confidence 888887899999999999999999999999999999999987641 112344444422
Q ss_pred eEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 273 LLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
..|++|+||.+|+++|+++|+||+||+|++||||++.
T Consensus 377 ----------------~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 377 ----------------PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp ----------------CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCS
T ss_pred ----------------CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC
Confidence 3699999999999999999999999999999998754
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-45 Score=356.13 Aligned_cols=259 Identities=21% Similarity=0.249 Sum_probs=207.7
Q ss_pred hccccccCcccEEEeccC-CCCCCCCCC-----CCCCceeecc--CCCceeEEEecCCceeEEEeCCCCEEEecCCCCCC
Q 019441 11 NEKMEECKETVVYMWGYL-PGTSPEKSP-----ILSPIPARLC--GGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (341)
Q Consensus 11 ~~~~~~~~~g~v~~wG~n-~g~~g~~~~-----~~~p~~~~~~--~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~G 82 (341)
-+..++++++.||+||.| .|+||.... ...|++++.+ ...+|++|+| |..|+++|+++|+||+||.| ++|
T Consensus 20 ~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~-G~~Ht~alt~~G~v~~wG~n-~~G 97 (473)
T 3of7_A 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAV-GGMHTLALDEESNVWSWGCN-DVG 97 (473)
T ss_dssp HHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEE-CSSEEEEEETTCCEEEEECC-TTS
T ss_pred cccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEe-CCCeEEEEecCCeEEEeECC-CCC
Confidence 345678899999999999 899997652 2344444444 4579999999 66899999999999999999 999
Q ss_pred CCcccCCCC-----------------------CCCCeecCC--C----CCCcEEEEeecCCeeEEEecCCcEEEecC--C
Q 019441 83 QSYLTSGKH-----------------------GETPEPFPL--P----TEASVVKAAAGWAHCVSVTEAGEVYTWGW--R 131 (341)
Q Consensus 83 qlG~~~~~~-----------------------~~~p~~i~~--~----~~~~i~~Va~G~~hs~~lt~~G~vy~wG~--n 131 (341)
|||++.... ...|.+++. + ...+|++|+||.+|+++|+++|+||+||. +
T Consensus 98 qLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~ 177 (473)
T 3of7_A 98 ALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRC 177 (473)
T ss_dssp TTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEE
T ss_pred CCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcC
Confidence 999876554 235666653 2 35899999999999999999999999998 6
Q ss_pred CCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCC
Q 019441 132 ECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPG 211 (341)
Q Consensus 132 ~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 211 (341)
.+||||.... .......|..+..+.+
T Consensus 178 ~~GqLG~~~~------------------------------------------------------~~~~~~~P~~v~~l~~ 203 (473)
T 3of7_A 178 NEGILGFYQD------------------------------------------------------KIKIQKTPWKVPTFSK 203 (473)
T ss_dssp TTEEEESBTT------------------------------------------------------TBSCEEEEEECCCCCS
T ss_pred CCCccCCCCC------------------------------------------------------CCccccCcEEccccCC
Confidence 7898885221 1113456888888877
Q ss_pred CeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCC---ccCCCeeec--ccccccCCCCCceEeec-CcccccCC
Q 019441 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIK---MVPTPHLIP--CLEHAASGKDRPLLVRQ-GSVNSSGK 285 (341)
Q Consensus 212 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~---~~~~P~~i~--~~~~~~~g~~~~~~~~~-~~~~~~~~ 285 (341)
.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ....|..+. .+..++||..|+++++. |+++.++.
T Consensus 204 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~ 283 (473)
T 3of7_A 204 YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGL 283 (473)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCC
Confidence 7899999999999999999999999999999999986532 234566653 46667999999999987 66665443
Q ss_pred CC--------------------------CCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 286 AG--------------------------RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 286 ~~--------------------------~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
+. ...|++|+||.+|+++|+++|+||+||+|.+||||++.
T Consensus 284 n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~ 349 (473)
T 3of7_A 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPK 349 (473)
T ss_dssp CTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCG
T ss_pred CCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCc
Confidence 21 14699999999999999999999999999999998854
No 9
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.2e-42 Score=328.69 Aligned_cols=268 Identities=24% Similarity=0.398 Sum_probs=212.3
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCC-cEEE
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG-EVYT 127 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G-~vy~ 127 (341)
..+|++|+| |..|+++|+++|+||+||.| ++||||++.......|.+++.+...+|++|+||..|+++|+++| +||+
T Consensus 15 ~~~v~~ia~-G~~hs~al~~~g~v~~wG~n-~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISA-GASHSVALLSGDIVCSWGRG-EDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEE-CSSEEEEEETTTEEEEEECC-TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEec-CCCeEEEEEeCCEEEEEeCC-CCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 369999999 66899999999999999999 99999999888777788887777789999999999999999986 9999
Q ss_pred ecCCCCcCCCCccccCCC-CCCcccCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCC-CCCCCccccccee
Q 019441 128 WGWRECVPSAKVTRDFGS-AGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENP-ASGDEFFTLSPCL 205 (341)
Q Consensus 128 wG~n~~gqlG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 205 (341)
||.|.+||||........ +..+ .......+.++.|... +...++..++++.|+.+.... ..++......|+.
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v-----~~l~~~~i~~ia~G~~-h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPI-----KALHGIRIKQIACGDS-HCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEEC-----GGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EcCCCCcCCCCCCCCccccceEe-----cccCCCCEEEEEEChh-heEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 999999999976432110 0001 0111223444555433 344556667788777665443 3455556678888
Q ss_pred eecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeeccc-----ccccCCCCCceEeec-Cc
Q 019441 206 VTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL-----EHAASGKDRPLLVRQ-GS 279 (341)
Q Consensus 206 v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~-----~~~~~g~~~~~~~~~-~~ 279 (341)
+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.. .....|+++..+ ..++||..|++.++. |+
T Consensus 167 v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS-CCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC
T ss_pred ecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC-CCcCccEEecccCCceEEEEEECCCcEEEEcCCCC
Confidence 88888889999999999999999999999999999999999887 455677777543 456999999999987 77
Q ss_pred ccccCCCC----------------------CCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441 280 VNSSGKAG----------------------RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKC 325 (341)
Q Consensus 280 ~~~~~~~~----------------------~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~ 325 (341)
++.++... +..|++|+||.+|+++|+++|+||+||+|.+||||++.
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 313 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC
Confidence 76655321 24599999999999999999999999999999998743
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.3e-42 Score=326.94 Aligned_cols=296 Identities=21% Similarity=0.268 Sum_probs=219.9
Q ss_pred hhhhccccccCcccEEEeccC-CCCCCCCCC----CCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecC--CCC
Q 019441 8 REENEKMEECKETVVYMWGYL-PGTSPEKSP----ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS--ADD 80 (341)
Q Consensus 8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~----~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~--n~~ 80 (341)
|...+.++|+++|+||+||.| .|+||.... ...|+++.++ .+|++|+| |..|+++|+++|+||+||. | .
T Consensus 66 ~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~--~~i~~va~-G~~hs~alt~~G~v~~wG~~~n-~ 141 (413)
T 1a12_A 66 AGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ--EKVVQVSA-GDSHTAALTDDGRVFLWGSFRD-N 141 (413)
T ss_dssp ECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCC--SCEEEEEE-CSSEEEEEETTSCEEEEECEEE-T
T ss_pred eCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCC--CcEEEEec-CCCeEEEEcCCCcEEEeeCCcC-C
Confidence 456788999999999999999 899997643 4556666543 49999999 7789999999999999999 7 8
Q ss_pred CCCCcccCCCCC-CCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCC--------Ccc-
Q 019441 81 EGQSYLTSGKHG-ETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG--------SFQ- 150 (341)
Q Consensus 81 ~GqlG~~~~~~~-~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~--------~~~- 150 (341)
+||||.+..... ..|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.......... ..+
T Consensus 142 ~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~ 219 (413)
T 1a12_A 142 NGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPK 219 (413)
T ss_dssp TEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCE
T ss_pred CCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCc
Confidence 999998754432 234444 56689999999999999999999999999999999997643221100 000
Q ss_pred ---cCCCCCCCCCCcccCCCCCccccchhhcceeeeccccCCCCC-CCCCCcccccceeeecCCC--CeEEEEEcCCCeE
Q 019441 151 ---KDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENP-ASGDEFFTLSPCLVTLNPG--VKITKVAAGGRHT 224 (341)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~v~~~~~--~~i~~Ia~G~~h~ 224 (341)
....+......+..+.|... +...+...+.++.|+.+.... ..++......|+.+..+.+ .+|++|+||.+|+
T Consensus 220 ~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs 298 (413)
T 1a12_A 220 CVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298 (413)
T ss_dssp ECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEE
T ss_pred eEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceE
Confidence 00000001122333444332 344455667777777654433 2344445678888887765 5799999999999
Q ss_pred EEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeeccc---ccccCCCCCceEeec-CcccccCCCC-------------
Q 019441 225 LILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCL---EHAASGKDRPLLVRQ-GSVNSSGKAG------------- 287 (341)
Q Consensus 225 ~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~---~~~~~g~~~~~~~~~-~~~~~~~~~~------------- 287 (341)
+||+++|+||+||.|.+||||.+........|++|+.+ ..++||..|+++++. |+++.++...
T Consensus 299 ~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~ 378 (413)
T 1a12_A 299 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW 378 (413)
T ss_dssp EEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEE
T ss_pred EEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcc
Confidence 99999999999999999999998655667788888644 456899999999977 6666554421
Q ss_pred -----------CCcEEEEeeCCCeEEEEeCCCCE
Q 019441 288 -----------RSYVKEIACGGRHSAVVTDAGAL 310 (341)
Q Consensus 288 -----------~~~i~~V~~G~~hs~~lt~~G~v 310 (341)
...|++|+||.+|+++|+++|++
T Consensus 379 ~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 379 SPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp EEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred cCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 23699999999999999998864
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4.1e-40 Score=298.97 Aligned_cols=212 Identities=22% Similarity=0.296 Sum_probs=161.2
Q ss_pred hhhhccccccCcccEEEeccC-CCCCCCCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcc
Q 019441 8 REENEKMEECKETVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYL 86 (341)
Q Consensus 8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~ 86 (341)
|-..+.++|+ +|+||+||.| .|++|. | ... ..+|++|+| |..|+++|+ ||+||+||.| .+||||.
T Consensus 31 ~G~~h~~~l~-~G~v~~wG~n~~Gqlg~------p--~~~--~~~i~~ia~-G~~hs~~l~-~G~v~~wG~n-~~Gqlg~ 96 (282)
T 3qhy_B 31 GGYFHGLALK-GGKVLGWGANLNGQLTM------P--AAT--QSGVDAIAA-GNYHSLALK-DGEVIAWGGN-EDGQTTV 96 (282)
T ss_dssp ECSSEEEEEE-TTEEEEEECCSSSTTSC------C--GGG--GSCCCEEEE-CSSEEEEEE-TTEEEEEECC-TTSTTCC
T ss_pred eCCCeEEEEE-CCEEEEEeCCCCCCCCC------C--ccC--CCCEEEEEe-CCCEEEEEE-CCEEEEeeCC-CCCCCCC
Confidence 4456778887 8999999998 788873 2 222 348899999 668999996 8999999999 8999874
Q ss_pred cCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCC
Q 019441 87 TSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAP 166 (341)
Q Consensus 87 ~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (341)
|.++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||....
T Consensus 97 --------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~------------------------- 138 (282)
T 3qhy_B 97 --------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE------------------------- 138 (282)
T ss_dssp --------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG-------------------------
T ss_pred --------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc-------------------------
Confidence 3333 257999999999999999 99999999999988773110
Q ss_pred CCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCC
Q 019441 167 PSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGL 246 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~ 246 (341)
...+|++|+||.+|+++|+ +|+||+||.|.+||||.
T Consensus 139 -------------------------------------------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~ 174 (282)
T 3qhy_B 139 -------------------------------------------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV 174 (282)
T ss_dssp -------------------------------------------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred -------------------------------------------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC
Confidence 0125778888888888887 68888888888888874
Q ss_pred CCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCC----------CcEEEEeeCCCeEEEEeCCCCEEEeeCC
Q 019441 247 GSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGR----------SYVKEIACGGRHSAVVTDAGALLTFGWG 316 (341)
Q Consensus 247 ~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~i~~V~~G~~hs~~lt~~G~v~~wG~n 316 (341)
.... ...+..++||..|++.+..|+++.++.... ..|++|+||.+|+++|+ +|+||+||+|
T Consensus 175 p~~~--------~~~v~~i~~G~~hs~al~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 175 PAEA--------QSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp CGGG--------GSSEEEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred ceec--------CCCeEEEEecCCEEEEEECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 3221 123455678888888875577665554322 57999999999999999 9999999999
Q ss_pred CCCCCCcc
Q 019441 317 LYGQRMAK 324 (341)
Q Consensus 317 ~~GQLG~~ 324 (341)
++||+++.
T Consensus 246 ~~gq~~v~ 253 (282)
T 3qhy_B 246 RTAPSSVQ 253 (282)
T ss_dssp CCCCGGGS
T ss_pred CCccccCC
Confidence 99999883
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.8e-39 Score=290.53 Aligned_cols=204 Identities=27% Similarity=0.409 Sum_probs=165.9
Q ss_pred ccEEEeccC-CCCCCCCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeec
Q 019441 20 TVVYMWGYL-PGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPF 98 (341)
Q Consensus 20 g~v~~wG~n-~g~~g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i 98 (341)
.+||+||.| ..+. .+.|++ ...+|++|+| |..|+++|+ +|+||+||.| .+||||. |.+
T Consensus 2 ~~v~~WG~n~~~~~-------~~~p~~--~~~~i~~ia~-G~~h~~~l~-~G~v~~wG~n-~~Gqlg~--------p~~- 60 (282)
T 3qhy_B 2 TSVVAWGGNNDWGE-------ATVPAE--AQSGVDAIAG-GYFHGLALK-GGKVLGWGAN-LNGQLTM--------PAA- 60 (282)
T ss_dssp CEEEEECSCCTTST-------TCCCGG--GSSSCCEEEE-CSSEEEEEE-TTEEEEEECC-SSSTTSC--------CGG-
T ss_pred eEEEEeCCCCCcCc-------ccCCcc--ccCCCcEEEe-CCCeEEEEE-CCEEEEEeCC-CCCCCCC--------Ccc-
Confidence 469999987 2222 123333 3348999999 778999998 9999999999 9999984 222
Q ss_pred CCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcccCCCCCccccchhhc
Q 019441 99 PLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVK 178 (341)
Q Consensus 99 ~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (341)
...+|++|+||.+|+++|+ +|+||+||.|.+||||.
T Consensus 61 ---~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~---------------------------------------- 96 (282)
T 3qhy_B 61 ---TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV---------------------------------------- 96 (282)
T ss_dssp ---GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC----------------------------------------
T ss_pred ---CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC----------------------------------------
Confidence 2358999999999999996 99999999999999873
Q ss_pred ceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCee
Q 019441 179 RRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHL 258 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~ 258 (341)
|..+ ..+|++|+||.+|+++|+ +|+||+||.|.+||||.... .
T Consensus 97 ------------------------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~--------~ 139 (282)
T 3qhy_B 97 ------------------------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE--------A 139 (282)
T ss_dssp ------------------------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG--------G
T ss_pred ------------------------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc--------C
Confidence 1111 127999999999999999 99999999999999985432 1
Q ss_pred ecccccccCCCCCceEeecCcccccCCCC----------CCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCcccc
Q 019441 259 IPCLEHAASGKDRPLLVRQGSVNSSGKAG----------RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCL 326 (341)
Q Consensus 259 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~~ 326 (341)
...+..++||..+++.++.|+++.++... ..+|++|+||.+|+++| ++|+||+||.|.+||||++..
T Consensus 140 ~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~ 216 (282)
T 3qhy_B 140 QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE 216 (282)
T ss_dssp GSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG
T ss_pred CCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc
Confidence 12356679999999999988887666543 25799999999999999 899999999999999998653
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.90 E-value=0.015 Score=49.99 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcE
Q 019441 212 VKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYV 291 (341)
Q Consensus 212 ~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 291 (341)
..|-+|+.-..|++++--++++|.||+++.||+-..... ...
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------------------------------gPf 350 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------------------------------GPY 350 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------------------------------CCE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------------------------------chH
Confidence 367788999999999999999999999999998665542 568
Q ss_pred EEEeeCCCeEEEEeCCCCEEEeeCCCCCCC
Q 019441 292 KEIACGGRHSAVVTDAGALLTFGWGLYGQR 321 (341)
Q Consensus 292 ~~V~~G~~hs~~lt~~G~v~~wG~n~~GQL 321 (341)
.++.+|.++++-+..-..+-.||..-..-|
T Consensus 351 la~~AG~~fTVTVn~~nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 351 IQLAAGHNFTVTVNTLNQVMFWGDSPDNSL 380 (400)
T ss_dssp EEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred HhHhccCCeEEEEeceeeEEEecCCCCcce
Confidence 999999999999999999999999777666
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.79 E-value=0.059 Score=46.41 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=54.4
Q ss_pred ceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecC
Q 019441 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (341)
Q Consensus 51 ~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~ 130 (341)
.|-+|+ |...|.+++--|++||+||.+ +.||+-.. . ...++.++.+|.++++-+..-..+--||+
T Consensus 310 ~i~~Vs-G~y~H~vvi~gd~el~sFG~~-sNGQ~~ip--------~-----tagPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVS-GLYTHYTVMYGDGQIAFFGNN-DNGQCDVD--------D-----HAGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCB-CSSSEEEC-CTTTCCCEEECC-TTSTTCCC--------G-----GGCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred cccccc-ccccceEEEecCceeEEeccC-CCCceecC--------C-----CcchHHhHhccCCeEEEEeceeeEEEecC
Confidence 445555 488899999999999999999 99998321 1 12678999999999999999999999997
Q ss_pred CCC
Q 019441 131 REC 133 (341)
Q Consensus 131 n~~ 133 (341)
.-.
T Consensus 375 SPD 377 (400)
T 4gbf_A 375 SPD 377 (400)
T ss_dssp CTT
T ss_pred CCC
Confidence 544
No 15
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.49 E-value=16 Score=31.82 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=45.7
Q ss_pred CCCceeEEEe-cCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec---CCeeEEEecCC
Q 019441 48 GGDSWKDVCG-GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG---WAHCVSVTEAG 123 (341)
Q Consensus 48 ~~~~i~~i~~-~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G---~~hs~~lt~~G 123 (341)
.++.+..+.. -...+.+++|++|++|.--.. +.-... ... + +..+.+|+.+-+- ....+++|.+|
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-~lp~~~-~~~--------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-QALQGS-KVS--------L-KSREEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSH-HHHTSE-ECC--------C-SSTTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-hCccCc-ccc--------c-CCCCCEEEEEECCcCCCCEEEEEeCCC
Confidence 4566666643 134468899999999997665 221110 000 3 4456888888762 24688889999
Q ss_pred cEEEecC
Q 019441 124 EVYTWGW 130 (341)
Q Consensus 124 ~vy~wG~ 130 (341)
.+...--
T Consensus 91 ~iKr~~l 97 (276)
T 3no0_A 91 YVKKIPL 97 (276)
T ss_dssp EEEEEEG
T ss_pred EEEEEEH
Confidence 8887653
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=86.39 E-value=26 Score=34.27 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=31.7
Q ss_pred cccccCcccEEEeccCCCCCCCCCCCCCCceeeccCCCceeEE---EecCCceeEEEeCCCCEEEecCC
Q 019441 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDV---CGGGCGFALATSESGKLITWGSA 78 (341)
Q Consensus 13 ~~~~~~~g~v~~wG~n~g~~g~~~~~~~p~~~~~~~~~~i~~i---~~~g~~h~~~lt~~G~vy~wG~n 78 (341)
.+++..+++||++|..... ....+.|. ......+ -..-+.|++++..+|+||.+|..
T Consensus 247 ~~~~~~~g~lyv~GG~~~~---~v~~yd~~------t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAK---KTSLYDSS------SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp EEEECTTSCEEEECSSSTT---CEEEEEGG------GTEEEECCCCSSCCSSCEEEECTTSCEEEECCC
T ss_pred cccCCCCCCEEEeCCCCCC---ceEEecCc------CCceeECCCCCccccccceEEecCCeEEEEeCc
Confidence 3455678999999874221 11111111 1111111 11134588888889999999983
No 17
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.03 E-value=20 Score=31.72 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=51.7
Q ss_pred eccCCCceeEEE-ecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec-----CCeeEE
Q 019441 45 RLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVS 118 (341)
Q Consensus 45 ~~~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G-----~~hs~~ 118 (341)
.+..++.++.+. +-+..+.+++|+.|++|.+-.. +.-..+..... ......+.+..+.+|+.+... ..+.++
T Consensus 42 ~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~-~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~ 119 (312)
T 1suu_A 42 DLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY-EIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLL 119 (312)
T ss_dssp CCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG-GSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred ccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH-HCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEE
Confidence 344555665542 3255688999999999999886 33222221111 112234455566778877654 356888
Q ss_pred EecCCcEEEecCCC
Q 019441 119 VTEAGEVYTWGWRE 132 (341)
Q Consensus 119 lt~~G~vy~wG~n~ 132 (341)
+|++|.++..-...
T Consensus 120 ~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 120 TTASGKIARFESTD 133 (312)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EeCCCeEEEEEHHH
Confidence 89999999875433
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.60 E-value=17 Score=36.01 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.3
Q ss_pred CceeEEEeCCCCEEEecCC
Q 019441 60 CGFALATSESGKLITWGSA 78 (341)
Q Consensus 60 ~~h~~~lt~~G~vy~wG~n 78 (341)
..|++++..+++||.+|..
T Consensus 491 ~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEECTTSCEEEECCB
T ss_pred ccceEEEEcCCEEEEECCC
Confidence 4587777669999999986
No 19
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.45 E-value=31 Score=30.72 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=48.5
Q ss_pred CCCceeEE-EecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecC-----CeeEEEec
Q 019441 48 GGDSWKDV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTE 121 (341)
Q Consensus 48 ~~~~i~~i-~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~-----~hs~~lt~ 121 (341)
.++.+..+ .+-...+.+++|+.|++|..-.. +.-..+... .-......+++..+.+|+.+.+-. ...+++|.
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~-~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~ 117 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAY-DLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR 117 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGG-GSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHH-HCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence 34445544 22255677889999999998876 322221110 000111235566678888887654 46788899
Q ss_pred CCcEEEecC
Q 019441 122 AGEVYTWGW 130 (341)
Q Consensus 122 ~G~vy~wG~ 130 (341)
+|.+.-.-.
T Consensus 118 ~G~iKr~~l 126 (327)
T 3uc1_A 118 NGLVKKSKL 126 (327)
T ss_dssp TSEEEEEEG
T ss_pred CCEEEEeEH
Confidence 998887653
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=74.13 E-value=50 Score=29.79 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEe
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~w 128 (341)
...|..++. .....+.-..||.|+.|-.. . ++. ...+. .....|..++......+.-..||.|+.|
T Consensus 173 ~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~-~-~~~----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 173 TGSVLCLQY-DERVIITGSSDSTVRVWDVN-T-GEM----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp SSCEEEEEC-CSSEEEEEETTSCEEEEESS-S-CCE----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEE-CCCEEEEEcCCCeEEEEECC-C-CcE----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence 456777776 33566667889999999875 2 221 01111 1235677888777777788888999998
Q ss_pred cC
Q 019441 129 GW 130 (341)
Q Consensus 129 G~ 130 (341)
=.
T Consensus 239 d~ 240 (435)
T 1p22_A 239 DM 240 (435)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=74.06 E-value=72 Score=31.50 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=33.9
Q ss_pred CceeEEEeC-CCCEEEecCCCCCCCCcccCCCC--CCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecC
Q 019441 60 CGFALATSE-SGKLITWGSADDEGQSYLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (341)
Q Consensus 60 ~~h~~~lt~-~G~vy~wG~n~~~GqlG~~~~~~--~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~ 130 (341)
..|++++.. +++||.+|........ ..+... ...-++..+.. .+ ..-..|++++..+++||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~-~~dv~~yd~~t~~W~~~~~-~p----~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQG-LSDNWIFDMKTREWSMIKS-LS----HTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCB-CCCCEEEETTTTEEEECCC-CS----BCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCc-cccEEEEeCCCCcEEECCC-CC----CCcccceEEEEcCCEEEEECC
Confidence 358887776 9999999986222210 000000 00111111111 00 123568877767999999983
No 22
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=72.05 E-value=53 Score=29.12 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=48.9
Q ss_pred ccCCCceeEE-EecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecC-----CeeEEE
Q 019441 46 LCGGDSWKDV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSV 119 (341)
Q Consensus 46 ~~~~~~i~~i-~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~-----~hs~~l 119 (341)
...++.++.+ .|-+..+.+++|+.|++|..-.. +.-..+...... .....+++..+.+|+.+..-. ...+++
T Consensus 35 lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~-elp~~~r~a~G~-~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~ 112 (323)
T 1wp5_A 35 MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVH-ELPDIRWKDLGQ-HIANIIPIDRDEEIIKAIPINDFELNGYFLFV 112 (323)
T ss_dssp CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGG-GSCBCCTTSCCE-EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEE
T ss_pred cCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHH-HCcCCCCCCCCc-ChhhccCCCCCCEEEEEEEecccCCCceEEEE
Confidence 3445555554 23256688999999999999887 433322211111 112234455567777664432 357788
Q ss_pred ecCCcEEEecC
Q 019441 120 TEAGEVYTWGW 130 (341)
Q Consensus 120 t~~G~vy~wG~ 130 (341)
|++|.+.-.--
T Consensus 113 T~~G~iKrt~l 123 (323)
T 1wp5_A 113 TRNGMVKKTEL 123 (323)
T ss_dssp ETTSEEEEEEG
T ss_pred eCCCeEEEeEH
Confidence 88888777643
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=69.59 E-value=51 Score=27.88 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=58.1
Q ss_pred hhhccccccCcccEEEeccCCCCC-CCCCCCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCccc
Q 019441 9 EENEKMEECKETVVYMWGYLPGTS-PEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (341)
Q Consensus 9 ~~~~~~~~~~~g~v~~wG~n~g~~-g~~~~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~ 87 (341)
.+...+++..+|.+++.+...+.. -..................|..++.......++...+|.|..|-.. .....
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~-~~~~~--- 85 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNK--- 85 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCC---
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC-CCCce---
Confidence 345678889999999988753322 1111111111112233556777765333344555558999999776 21111
Q ss_pred CCCCCCCCeecC-CCCCCcEEEEeecCC--eeEEEecCCcEEEec
Q 019441 88 SGKHGETPEPFP-LPTEASVVKAAAGWA--HCVSVTEAGEVYTWG 129 (341)
Q Consensus 88 ~~~~~~~p~~i~-~~~~~~i~~Va~G~~--hs~~lt~~G~vy~wG 129 (341)
.....+. ......|..++...+ ..++-..+|.|+.|-
T Consensus 86 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 86 -----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp -----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred -----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 0111111 123355666665543 344445678888874
No 24
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.77 E-value=66 Score=28.17 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=46.2
Q ss_pred eccCCCceeEE-EecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEee-----cCCeeEE
Q 019441 45 RLCGGDSWKDV-CGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA-----GWAHCVS 118 (341)
Q Consensus 45 ~~~~~~~i~~i-~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~-----G~~hs~~ 118 (341)
....++.++++ .+-+..+.+++|+.|++|..-.. +.-..+.... -......+.+..+.+|+.+.. .....++
T Consensus 37 ~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~-elp~~~~~a~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~ 114 (307)
T 1zi0_A 37 RIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY-QLPEATRGAR-GRPIVNLLPLEQDERITAILPVTEFEEGVKVFM 114 (307)
T ss_dssp -----CCEEEEEEEETTCEEEEEETTSEEEEEEGG-GSCCCCSSSC-CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEE
T ss_pred eeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhh-HCcCCCCCCC-CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEE
Confidence 34445555554 23256688999999999999887 4333322111 011112334555677877754 2334677
Q ss_pred EecCCcEEEec
Q 019441 119 VTEAGEVYTWG 129 (341)
Q Consensus 119 lt~~G~vy~wG 129 (341)
+|++|.+.-.-
T Consensus 115 ~T~~G~~Krt~ 125 (307)
T 1zi0_A 115 ATANGTVKKTV 125 (307)
T ss_dssp EETTSEEEEEE
T ss_pred EeCCCeEEEEE
Confidence 78888877654
No 25
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=65.54 E-value=77 Score=28.50 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEe
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~w 128 (341)
...|..++. .....+.-..||.|+.|-.. ..... ............|..++......+.-..||.|+.|
T Consensus 213 ~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~-~~~~~---------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 213 CEAVLHLRF-NNGMMVTCSKDRSIAVWDMA-SPTDI---------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CSCEEEEEC-CTTEEEEEETTSCEEEEECS-SSSCC---------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCcEEEEEE-cCCEEEEeeCCCcEEEEeCC-CCCCc---------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 345666766 33566677888999998765 21110 01111222335677787777777777888999988
Q ss_pred cC
Q 019441 129 GW 130 (341)
Q Consensus 129 G~ 130 (341)
-.
T Consensus 282 d~ 283 (435)
T 1p22_A 282 NT 283 (435)
T ss_dssp ET
T ss_pred EC
Confidence 53
No 26
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.87 E-value=1e+02 Score=27.81 Aligned_cols=88 Identities=14% Similarity=-0.033 Sum_probs=52.3
Q ss_pred ceeeccCCCceeEEE-ecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec-----CCe
Q 019441 42 IPARLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAH 115 (341)
Q Consensus 42 ~~~~~~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G-----~~h 115 (341)
..+.+..++.++.+. +-+..+.+++|+.|++|.+-.. +.-.++.... -......+++..+.+|+.+..- ..+
T Consensus 38 ~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~-eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ 115 (370)
T 3l6v_A 38 SAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH-QLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRY 115 (370)
T ss_dssp EEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGG-GSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCE
T ss_pred eecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH-HCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcE
Confidence 345555666666553 3244567889999999999876 3332222111 0011123345566788887653 346
Q ss_pred eEEEecCCcEEEecCC
Q 019441 116 CVSVTEAGEVYTWGWR 131 (341)
Q Consensus 116 s~~lt~~G~vy~wG~n 131 (341)
.+++|++|.+.-.--.
T Consensus 116 ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 116 VFMATRNGTVKKTPLS 131 (370)
T ss_dssp EEEEETTSEEEEEEGG
T ss_pred EEEEeCCCeEEEeEHH
Confidence 7888999987766533
No 27
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=58.71 E-value=85 Score=26.70 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=51.2
Q ss_pred ceeeccCCCceeEEE-ecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec--CCeeEE
Q 019441 42 IPARLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVS 118 (341)
Q Consensus 42 ~~~~~~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G--~~hs~~ 118 (341)
..+.+..++.++.+. +-+..+.+++|++|++|..-.. +.-.. . ..-......+.+..+.+|+.+... ..+.++
T Consensus 25 ~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~-elp~~-r--~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll 100 (256)
T 1zvt_A 25 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPSA-R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 100 (256)
T ss_dssp TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGG-GSCCS-S--SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEE
T ss_pred eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHH-HCCCc-C--CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEE
Confidence 344455666766653 2245578899999999999887 32111 1 000011123445566788888663 345777
Q ss_pred EecCCcEEEecC
Q 019441 119 VTEAGEVYTWGW 130 (341)
Q Consensus 119 lt~~G~vy~wG~ 130 (341)
+|++|.+.-.-.
T Consensus 101 ~T~~G~~Kr~~~ 112 (256)
T 1zvt_A 101 ASDAGYGFVCTF 112 (256)
T ss_dssp EBTTSEEEEEEG
T ss_pred EeCCCeEEEeEH
Confidence 889998776643
No 28
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=55.34 E-value=1.2e+02 Score=27.27 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=42.5
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEe
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~w 128 (341)
...|..++. .....+.-..||.|+.|-.. . ++. ...+. .....|..++......+.-..||.|+.|
T Consensus 159 ~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~-~-~~~----------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 159 TGGVWSSQM-RDNIIISGSTDRTLKVWNAE-T-GEC----------IHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVW 224 (445)
T ss_dssp SSCEEEEEE-ETTEEEEEETTSCEEEEETT-T-TEE----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEe-cCCEEEEEeCCCeEEEEECC-c-CcE----------EEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEE
Confidence 345666665 33466677888999999765 2 111 01111 1235677777777777777888999988
Q ss_pred cC
Q 019441 129 GW 130 (341)
Q Consensus 129 G~ 130 (341)
-.
T Consensus 225 d~ 226 (445)
T 2ovr_B 225 DI 226 (445)
T ss_dssp ES
T ss_pred EC
Confidence 53
No 29
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=54.84 E-value=24 Score=34.52 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=33.0
Q ss_pred eeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEe-ecCCeeEEEecCCcEEEecC
Q 019441 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA-AGWAHCVSVTEAGEVYTWGW 130 (341)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va-~G~~hs~~lt~~G~vy~wG~ 130 (341)
+++++..+|+||.+|.. ....+-.-+.. .-++.+++. +. .-..|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~-~~~~v~~yd~~---t~~W~~~~~------~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGN-DAKKTSLYDSS---SDSWIPGPD------MQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSS-STTCEEEEEGG---GTEEEECCC------CSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCC-CCCceEEecCc---CCceeECCC------CCccccccceEEecCCeEEEEeC
Confidence 34677789999999986 22211110000 001111111 11 23468888878999999986
No 30
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=52.66 E-value=1.3e+02 Score=26.97 Aligned_cols=28 Identities=7% Similarity=-0.065 Sum_probs=19.4
Q ss_pred eEEEEEcCCCeEEEEecCCcEEEEeCCC
Q 019441 213 KITKVAAGGRHTLILSDMGQVWGWGYGG 240 (341)
Q Consensus 213 ~i~~Ia~G~~h~~aLt~~G~vy~wG~n~ 240 (341)
.+..++......++-..+|.|+.|-...
T Consensus 321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 321 LTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 4555555566667777889999997643
No 31
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=44.97 E-value=2.4e+02 Score=27.94 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred cCCCceeEEE-ecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec--CCeeEEEecCC
Q 019441 47 CGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAG 123 (341)
Q Consensus 47 ~~~~~i~~i~-~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G--~~hs~~lt~~G 123 (341)
..++.+.++. |....+.+++|+.|++|..-.. ..-.. ...-......+++..+.+|+.+-.. ..+.++.|.+|
T Consensus 500 k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~-~lP~~---~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G 575 (716)
T 1zvu_A 500 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 575 (716)
T ss_dssp -----CCEEECCCSSSCEEEEETTSEEEEECTT-TSCCC---C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTS
T ss_pred CCCCeEEEEEEecCCCEEEEEecCCcEEEEEee-ecccc---cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCc
Confidence 3444554443 3245567889999999998887 32221 1111222334455567888888765 34567778888
Q ss_pred cEEEec
Q 019441 124 EVYTWG 129 (341)
Q Consensus 124 ~vy~wG 129 (341)
.+.-.-
T Consensus 576 ~vk~~~ 581 (716)
T 1zvu_A 576 YGFVCT 581 (716)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 877654
No 32
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=43.41 E-value=1.7e+02 Score=25.72 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=20.7
Q ss_pred EEEeecCCeeEEEecCCcEEEecCCC
Q 019441 107 VKAAAGWAHCVSVTEAGEVYTWGWRE 132 (341)
Q Consensus 107 ~~Va~G~~hs~~lt~~G~vy~wG~n~ 132 (341)
..++.+..+.+++|+.|++|..-...
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHH
Confidence 34666788999999999999986543
No 33
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.08 E-value=2.2e+02 Score=25.10 Aligned_cols=107 Identities=10% Similarity=0.003 Sum_probs=60.2
Q ss_pred ccCcccEEEeccCCCCCCCC--CCCCCC--ceeeccCCCceeEEEecC----CceeEEEeCCCCEEEecCCCCCCCCccc
Q 019441 16 ECKETVVYMWGYLPGTSPEK--SPILSP--IPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQSYLT 87 (341)
Q Consensus 16 ~~~~g~v~~wG~n~g~~g~~--~~~~~p--~~~~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~GqlG~~ 87 (341)
.+++|.+|..-.. .++.. +..-.| ..+++..+.+|+.+.... ..+.+++|++|.+...-.. ++-.-.
T Consensus 59 fT~~Gr~y~~~~~--~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~-~~~~~~-- 133 (327)
T 3uc1_A 59 FTTQGRVYRAKAY--DLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT-DFDSNR-- 133 (327)
T ss_dssp EETTSEEEEEEGG--GSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG-GGCCCC--
T ss_pred EeCCCeEEEEEHH--HCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH-Hhhccc--
Confidence 4566666665432 23322 111122 234455688999987643 2367889999998887655 221110
Q ss_pred CCCCCCCCeecCCCCCCcEEE--EeecCCeeEEEecCCcEEEecCC
Q 019441 88 SGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWR 131 (341)
Q Consensus 88 ~~~~~~~p~~i~~~~~~~i~~--Va~G~~hs~~lt~~G~vy~wG~n 131 (341)
..-..-+.+..+..++. ++.+..+.+++|++|++|.+-..
T Consensus 134 ----r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 134 ----SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp ----SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred ----cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 00011222323333443 34467889999999999998765
No 34
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.03 E-value=2.1e+02 Score=24.49 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=50.1
Q ss_pred ccCCCceeEEEecC---CceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEee--cCCeeEEEe
Q 019441 46 LCGGDSWKDVCGGG---CGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA--GWAHCVSVT 120 (341)
Q Consensus 46 ~~~~~~i~~i~~~g---~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~--G~~hs~~lt 120 (341)
+..+.+|+.+.+ . ..+.+++|++|.+...-.. ++-+- ..-..-+.+..+..++.+.. +..+.+++|
T Consensus 64 l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~-~~~~~-------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T 134 (276)
T 3no0_A 64 KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA-EFEYK-------AQGMPIIKLTEGDEVVSIASSVDETHILLFT 134 (276)
T ss_dssp SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG-GTTTC-------STTEECSCCCTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH-Hhhhh-------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEE
Confidence 556889999876 3 2467889999999887765 33211 00112233333445554433 456799999
Q ss_pred cCCcEEEecCCCC
Q 019441 121 EAGEVYTWGWREC 133 (341)
Q Consensus 121 ~~G~vy~wG~n~~ 133 (341)
++|++|.+-....
T Consensus 135 ~~G~~~r~~~~ei 147 (276)
T 3no0_A 135 KKGRVARFSVREV 147 (276)
T ss_dssp TTSEEEEEEGGGS
T ss_pred CCCEEEEEEhhhC
Confidence 9999999865544
No 35
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=33.51 E-value=2.3e+02 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=13.1
Q ss_pred CCeEEEEecCCcEEEEeC
Q 019441 221 GRHTLILSDMGQVWGWGY 238 (341)
Q Consensus 221 ~~h~~aLt~~G~vy~wG~ 238 (341)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3576666 7899999985
No 36
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=30.23 E-value=1.9e+02 Score=22.23 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=41.8
Q ss_pred CCCceeEEEecCCceeEEEeCCCCEEEecCC-CCCCCCcccCCCCCCCCeecCCCCCCcEEEEeec-CCeeEEEecCCcE
Q 019441 48 GGDSWKDVCGGGCGFALATSESGKLITWGSA-DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-WAHCVSVTEAGEV 125 (341)
Q Consensus 48 ~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n-~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G-~~hs~~lt~~G~v 125 (341)
.....+++-|-...+.+-|..||+|-.-... +.+..| ...++. ..++.|-|- ..+-+++..+|+|
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~~~s~l---------ei~sv~----~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQF---------QISPEG----NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTCGGGCE---------EEEEEE----TTEEEEEETTTTEEEEECTTSBE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCCCceEE---------EEEEcc----CCEEEEEEecCCEEEeECCCCCE
Confidence 4567888887222466889999999865443 111111 111221 346777764 4677888999999
Q ss_pred EEe
Q 019441 126 YTW 128 (341)
Q Consensus 126 y~w 128 (341)
|.-
T Consensus 95 ~Gs 97 (142)
T 3p6j_A 95 DGT 97 (142)
T ss_dssp EEE
T ss_pred eec
Confidence 974
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=29.45 E-value=1.7e+02 Score=24.57 Aligned_cols=76 Identities=9% Similarity=0.028 Sum_probs=35.4
Q ss_pred CceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEeecCC--eeEEEecCCcEEE
Q 019441 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYT 127 (341)
Q Consensus 50 ~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~--hs~~lt~~G~vy~ 127 (341)
..|..++..-..+.++...|+.|+.|-.. . +++-.... .... ..........|..|+...+ ..+.-..||.|+.
T Consensus 257 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~-~-~~~~~~~~-~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAATGPSIKIWDLE-G-KIIVDELK-QEVI-STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEETT-T-TEEEEEEC-CC--------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEeeecCCCCceeeccCCCEEEEEECC-C-CeEEEecc-ccce-eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 34545544233455666777888888654 1 11100000 0000 0000112245777766543 4444467888888
Q ss_pred ec
Q 019441 128 WG 129 (341)
Q Consensus 128 wG 129 (341)
|=
T Consensus 333 W~ 334 (340)
T 4aow_A 333 WQ 334 (340)
T ss_dssp EE
T ss_pred Ee
Confidence 83
No 38
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=29.09 E-value=1.3e+02 Score=23.08 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=37.4
Q ss_pred CceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCC-CCCcEEEEeecCCeeEEEecCCcEEE
Q 019441 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP-TEASVVKAAAGWAHCVSVTEAGEVYT 127 (341)
Q Consensus 50 ~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~-~~~~i~~Va~G~~hs~~lt~~G~vy~ 127 (341)
..++.|-+.-..+.+++..+|+||.--... .+. ..-+.+... -..-|+.+..|+ -++++.+|++|.
T Consensus 72 ~G~V~L~g~~sg~yL~mn~~G~l~Gs~~~t---------~ec-sflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 72 NGEVLLKSTETGQYLRINPDGTVDGTRDRS---------DTH-IQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp TTEEEEEETTTTEEEEECTTSBEEEECCTT---------CGG-GCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CCEEEEEEecCCEEEeECCCCCEeecccCC---------CCc-eEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 357778764335778999999999743320 000 011111111 112344444554 789999999996
No 39
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=27.52 E-value=3.4e+02 Score=24.36 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=34.7
Q ss_pred ceeEEEeCCCCEEEecCCCCCC-C--CcccCCCCCCCCeecCCCCCCcE--EEEeecCCeeEEEecCCcEEEecCCC
Q 019441 61 GFALATSESGKLITWGSADDEG-Q--SYLTSGKHGETPEPFPLPTEASV--VKAAAGWAHCVSVTEAGEVYTWGWRE 132 (341)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n~~~G-q--lG~~~~~~~~~p~~i~~~~~~~i--~~Va~G~~hs~~lt~~G~vy~wG~n~ 132 (341)
...+++|++|.|-.--.. .+- | -|.+ ..-+.+-.+..+ +.++.+..+.+++|+.|++|.+-...
T Consensus 8 ~~~v~lT~~GyIKr~~l~-~y~~~~r~g~g-------~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~e 76 (370)
T 3l6v_A 8 DVVVTLSHAGYAKRQPVS-AYRAQRRGGRG-------RSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQ 76 (370)
T ss_dssp CEEEEEESSCEEEEEEHH-HHHHTCCCCCC-------SEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCEEEEeeHH-HhhhhccCCCC-------ceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHH
Confidence 356788888888764322 100 0 0000 111222222333 34455667788899999999876443
No 40
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.04 E-value=3.1e+02 Score=23.78 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=52.1
Q ss_pred eeeccCCCceeEEEecC----CceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCCCCCCcEEEEee--cCCee
Q 019441 43 PARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA--GWAHC 116 (341)
Q Consensus 43 ~~~~~~~~~i~~i~~~g----~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~~~~~~i~~Va~--G~~hs 116 (341)
.+++..+..|+.+.... ..+.+++|++|.++..-.. ++-.. .... -..+.+..+..++.+.. +..+.
T Consensus 93 ~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~-~~~~~-r~~G-----~~~i~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 93 LINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST-DFKAV-KSRG-----VIVIKLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp TSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG-GGCC-----C-----EECBCCCTTCCEEEEEEECTTCEE
T ss_pred ccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH-Hhhcc-CCCc-----EEEEecCCCCEEEEEEEeCCCCEE
Confidence 45566678888886632 3467899999999998776 32110 0000 01123333455555443 56778
Q ss_pred EEEecCCcEEEecCCCC
Q 019441 117 VSVTEAGEVYTWGWREC 133 (341)
Q Consensus 117 ~~lt~~G~vy~wG~n~~ 133 (341)
+++|++|.+..+-....
T Consensus 166 ~l~T~~G~~~r~~~~ev 182 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDV 182 (312)
T ss_dssp EEEETTSEEEEEEGGGS
T ss_pred EEEeCCCcEEEEEHHHc
Confidence 99999999998876554
No 41
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=26.22 E-value=2.9e+02 Score=23.14 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=12.8
Q ss_pred ceeEEEeCCCCEEEecCC
Q 019441 61 GFALATSESGKLITWGSA 78 (341)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n 78 (341)
.|++++ -+++||.+|..
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 466555 48899999986
No 42
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=25.09 E-value=1.3e+02 Score=25.85 Aligned_cols=94 Identities=5% Similarity=-0.100 Sum_probs=0.0
Q ss_pred ccccccCcccEEEeccCCCCCCCCCCCCCCceeeccCCCceeEEEecC------CceeEEEeCCCCEEEecCCCCCCCCc
Q 019441 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGG------CGFALATSESGKLITWGSADDEGQSY 85 (341)
Q Consensus 12 ~~~~~~~~g~v~~wG~n~g~~g~~~~~~~p~~~~~~~~~~i~~i~~~g------~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (341)
..+++..++.+|+-...++.+ ..+......-+..+..+. .-+.+++ .+++||.-... ..+.+
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v---------~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-~~~~v- 154 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRI---------FIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-YQNRI- 154 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEE---------EEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-TCCEE-
T ss_pred cEEEEeCCCeEEEEECCCCeE---------EEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-CCCEE-
Q ss_pred ccCCCCCCCCeecCCCCCCcEEEEeecCC-eeEEEecCCcEEE
Q 019441 86 LTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTEAGEVYT 127 (341)
Q Consensus 86 ~~~~~~~~~p~~i~~~~~~~i~~Va~G~~-hs~~lt~~G~vy~ 127 (341)
..+.......+..+..+.. +.++++.+|++|.
T Consensus 155 ----------~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 155 ----------LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp ----------EEEETTTTEEEEEEECSSCBCCCEECTTSEEEE
T ss_pred ----------EEEECCCCeEEEEEEcCCCccceEEcCCCCEEE
No 43
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=24.99 E-value=3e+02 Score=23.06 Aligned_cols=17 Identities=6% Similarity=0.216 Sum_probs=11.8
Q ss_pred ccccccCcccEEEeccC
Q 019441 12 EKMEECKETVVYMWGYL 28 (341)
Q Consensus 12 ~~~~~~~~g~v~~wG~n 28 (341)
+.++.+.++.+|+-+..
T Consensus 48 ~~~~~~~~g~l~~~~~~ 64 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVF 64 (333)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred cCcEECCCCCEEEEECC
Confidence 56677778887776553
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=24.41 E-value=6e+02 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=14.8
Q ss_pred EEeeCCCeEEEEeCCCCEEEee
Q 019441 293 EIACGGRHSAVVTDAGALLTFG 314 (341)
Q Consensus 293 ~V~~G~~hs~~lt~~G~v~~wG 314 (341)
.++......++...+|.|+.|=
T Consensus 1225 ~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1225 HVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp EECSSSCCEEEECTTCCEEEEC
T ss_pred EECCCCCEEEEecCCcEEEEEe
Confidence 3444445566677889999884
No 45
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=24.28 E-value=3.6e+02 Score=24.31 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=21.8
Q ss_pred EEEEEcCCCeEEEEecCCcEEEEeCCCC
Q 019441 214 ITKVAAGGRHTLILSDMGQVWGWGYGGE 241 (341)
Q Consensus 214 i~~Ia~G~~h~~aLt~~G~vy~wG~n~~ 241 (341)
|..+++ ....+++..++.|..|=-.+.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl 116 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEEL 116 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSST
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhh
Confidence 889999 777788888899999876654
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=23.97 E-value=3.4e+02 Score=23.22 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCceeEEEecC-CceeEEEeCC---CCEEEecCCCCCCCCcccCCCCCCCCeec---CCCCCCcEEEEeec--CCeeEEE
Q 019441 49 GDSWKDVCGGG-CGFALATSES---GKLITWGSADDEGQSYLTSGKHGETPEPF---PLPTEASVVKAAAG--WAHCVSV 119 (341)
Q Consensus 49 ~~~i~~i~~~g-~~h~~~lt~~---G~vy~wG~n~~~GqlG~~~~~~~~~p~~i---~~~~~~~i~~Va~G--~~hs~~l 119 (341)
...|..++..- ..+.+....+ |.|+.|-.. ..-.+..-... ..|... .......|..++.. ....+.-
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE-FGERIGSLSVP--THSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT-TCCEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECC-CCcccceeccC--cccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 44566665421 1244555666 788888775 21111000000 000000 00023556666665 3445555
Q ss_pred ecCCcEEEecC
Q 019441 120 TEAGEVYTWGW 130 (341)
Q Consensus 120 t~~G~vy~wG~ 130 (341)
..+|.|+.|-.
T Consensus 310 ~~dg~i~iwd~ 320 (397)
T 1sq9_A 310 GWDGKLRFWDV 320 (397)
T ss_dssp ETTSEEEEEET
T ss_pred eCCCeEEEEEc
Confidence 67888888854
No 47
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=21.44 E-value=1.3e+02 Score=22.68 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=36.1
Q ss_pred ceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCcccCCCCCCCCeecCC-CCCCcEEEEeecCCeeEEEecCCcEEEe
Q 019441 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPL-PTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (341)
Q Consensus 51 ~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~i~~-~~~~~i~~Va~G~~hs~~lt~~G~vy~w 128 (341)
.++.|-..-..+.+.+..+|+||.--... .+. ...+.+.. .....|+.+..|+ -+++..+|++|.-
T Consensus 48 G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s---------~ec-~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 48 GEVLLRSTETGQFLRINPDGTVDGTRDRS---------DPG-IQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp TEEEEEETTTCCEEEECTTSBEEEECC-C---------CGG-GCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred CEEEEEEEcccEEEEECCCCCEeeccCCC---------CCc-eeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 46666543445678999999999743321 000 00111111 1113344444555 7889999999973
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=20.84 E-value=7e+02 Score=25.69 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=20.2
Q ss_pred CCceeEEEecCCceeEEEeCCCCEEEecCC
Q 019441 49 GDSWKDVCGGGCGFALATSESGKLITWGSA 78 (341)
Q Consensus 49 ~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n 78 (341)
...|..++.......+....+|.|+.|-..
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 345666655344456677888899999775
Done!