Query 019442
Match_columns 341
No_of_seqs 192 out of 1309
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1.8E-39 6.1E-44 303.0 22.4 190 146-340 2-197 (257)
2 2i53_A Cyclin K; cell cycle, t 100.0 9.8E-38 3.4E-42 290.9 20.0 187 145-340 11-205 (258)
3 3rgf_B Cyclin-C; protein kinas 100.0 6.4E-38 2.2E-42 297.9 18.8 189 146-340 13-207 (285)
4 2pk2_A Cyclin-T1, protein TAT; 100.0 4.6E-38 1.6E-42 308.2 13.3 191 145-340 8-204 (358)
5 1zp2_A RNA polymerase II holoe 100.0 2E-35 6.9E-40 272.6 14.3 172 146-340 7-184 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 3.5E-34 1.2E-38 277.0 21.8 182 145-340 7-220 (323)
7 1c9b_A General transcription f 100.0 3.8E-28 1.3E-32 219.5 17.1 143 176-340 5-152 (207)
8 3g33_B CCND3 protein; Ser/Thr 99.9 1.7E-27 5.9E-32 228.5 13.7 162 161-341 56-226 (306)
9 2b9r_A Human cyclin B1; cell c 99.9 3.7E-27 1.3E-31 221.8 14.6 152 170-341 32-189 (269)
10 2cch_B Cyclin A2, cyclin-A; co 99.9 7.3E-27 2.5E-31 218.6 16.0 153 170-341 33-192 (260)
11 2w96_A G1/S-specific cyclin-D1 99.9 3.7E-27 1.3E-31 221.8 13.7 157 166-341 47-212 (271)
12 1g3n_C V-cyclin; cyclin-depend 99.9 1.6E-26 5.6E-31 215.8 15.8 172 150-341 24-206 (257)
13 2f2c_A Cyclin homolog, V-cycli 99.9 8.3E-27 2.8E-31 217.5 11.9 157 166-341 42-207 (254)
14 1ais_B TFB TFIIB, protein (tra 99.9 7.3E-25 2.5E-29 196.8 15.4 147 171-340 5-158 (200)
15 1f5q_B Gamma herpesvirus cycli 99.9 3.8E-24 1.3E-28 200.2 17.3 157 165-340 38-203 (252)
16 1w98_B Cyclin E, G1/S-specific 99.9 3.1E-24 1E-28 203.6 14.9 153 170-341 44-213 (283)
17 3k7a_M Transcription initiatio 99.9 8.7E-23 3E-27 198.8 4.3 142 177-340 127-285 (345)
18 4bbr_M Transcription initiatio 99.7 1.7E-18 5.8E-23 168.8 8.5 142 177-340 127-285 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 1.3E-05 4.6E-10 71.0 9.4 89 180-289 109-197 (200)
20 1c9b_A General transcription f 97.5 0.0004 1.4E-08 61.8 9.2 67 180-246 103-169 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.3 0.0018 6.2E-08 61.4 11.5 104 179-304 77-184 (293)
22 3k7a_M Transcription initiatio 95.7 0.0017 5.9E-08 62.7 0.0 67 180-246 236-302 (345)
23 4bbr_M Transcription initiatio 95.6 0.0021 7E-08 62.3 0.0 69 179-247 235-303 (345)
24 1zp2_A RNA polymerase II holoe 94.1 0.096 3.3E-06 47.2 6.8 56 180-235 135-190 (235)
25 3rgf_B Cyclin-C; protein kinas 92.3 0.12 3.9E-06 48.3 4.6 56 180-235 158-213 (285)
26 3h4c_A Transcription factor TF 92.1 5.3 0.00018 36.0 14.8 65 180-244 16-83 (260)
27 2i53_A Cyclin K; cell cycle, t 91.8 0.26 8.9E-06 44.7 6.3 56 180-235 152-211 (258)
28 2b9r_A Human cyclin B1; cell c 90.5 0.36 1.2E-05 44.4 5.9 57 180-236 139-195 (269)
29 2ivx_A Cyclin-T2; transcriptio 90.2 0.56 1.9E-05 42.5 6.8 56 180-235 147-203 (257)
30 2f2c_A Cyclin homolog, V-cycli 88.3 1.5 5E-05 39.8 8.2 54 180-233 153-210 (254)
31 2cch_B Cyclin A2, cyclin-A; co 86.3 0.69 2.4E-05 42.2 4.8 63 180-242 140-204 (260)
32 3m03_A ORC6, origin recognitio 86.2 3.8 0.00013 32.4 8.3 61 183-244 6-71 (95)
33 2pk2_A Cyclin-T1, protein TAT; 83.7 0.75 2.6E-05 44.4 3.8 56 180-235 154-210 (358)
34 1g3n_C V-cyclin; cyclin-depend 82.4 4.8 0.00016 36.4 8.6 57 179-235 151-211 (257)
35 4ell_A Retinoblastoma-associat 80.2 6.1 0.00021 38.9 8.9 69 179-247 282-353 (411)
36 1jkw_A Cyclin H; cell cycle, c 79.7 2 6.8E-05 40.6 5.2 45 191-235 182-226 (323)
37 2r7g_A PP110, retinoblastoma-a 79.2 7 0.00024 37.7 8.8 68 180-247 219-289 (347)
38 2w96_A G1/S-specific cyclin-D1 78.0 2.6 8.8E-05 38.5 5.3 55 179-233 157-215 (271)
39 3g33_B CCND3 protein; Ser/Thr 76.0 11 0.00037 35.2 9.0 55 180-234 172-230 (306)
40 2qdj_A Retinoblastoma-associat 76.0 5.6 0.00019 37.6 7.0 65 183-247 6-74 (304)
41 4elj_A Retinoblastoma-associat 72.2 8.9 0.0003 40.0 7.9 65 182-247 7-76 (656)
42 4elj_A Retinoblastoma-associat 70.8 14 0.0005 38.4 9.1 70 179-248 527-599 (656)
43 1unl_D Cyclin-dependent kinase 61.9 21 0.0007 31.3 6.9 20 214-233 119-138 (208)
44 1w98_B Cyclin E, G1/S-specific 49.3 28 0.00095 31.9 6.1 52 180-231 152-214 (283)
45 1f5q_B Gamma herpesvirus cycli 31.4 1.9E+02 0.0065 25.9 8.7 52 179-230 149-204 (252)
46 2r7g_A PP110, retinoblastoma-a 25.3 1.8E+02 0.0063 27.7 7.6 71 269-339 166-270 (347)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.8e-39 Score=303.01 Aligned_cols=190 Identities=28% Similarity=0.439 Sum_probs=172.5
Q ss_pred CCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHH
Q 019442 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA 225 (341)
Q Consensus 146 ~~~w~ft~eEl~~~sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAc 225 (341)
.++|+||++||+ .+||+.+|+++++|..+|..+++||.++|..|+|++.|+++|++|||||+.++++.++++++||+||
T Consensus 2 ~~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 357999999995 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHc
Q 019442 226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL 305 (341)
Q Consensus 226 LFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L 305 (341)
||||||+||.|+++++++.+++.+.++.... ....++.|+..+++|+.+|+.||++|+|+|.+++|+.||.+|++.+
T Consensus 81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~---~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 157 (257)
T 2ivx_A 81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV 157 (257)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred HHHHhccccCCcCHHHHHHHHHHHhccCCCC---CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence 9999999999999999999988766543211 1123466777899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-hhH-----HHHHHHHHHHHh
Q 019442 306 GLSQTVLVNLALNLVSEGFA-SCL-----QHGLATGALKHA 340 (341)
Q Consensus 306 ~ls~~~l~q~A~~ilnDsl~-T~L-----Ps~IAaAaIyLA 340 (341)
+.+.+ +.+.||.+++++++ +++ |++||+||||+|
T Consensus 158 ~~~~~-~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA 197 (257)
T 2ivx_A 158 RASKD-LAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLA 197 (257)
T ss_dssp TCCHH-HHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHH
Confidence 98874 89999999999984 653 999999999998
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.8e-38 Score=290.88 Aligned_cols=187 Identities=27% Similarity=0.486 Sum_probs=167.5
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHH
Q 019442 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (341)
Q Consensus 145 ~~~~w~ft~eEl~~~sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaA 224 (341)
+..+|+|+++|+. .+||+.+|+++++|..+|..+++||.++|..|+|++.|+++|++|||||+.++++.++++++||+|
T Consensus 11 ~~~~w~~~~~el~-~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~a 89 (258)
T 2i53_A 11 TKPCWYWDKKDLA-HTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGAC 89 (258)
T ss_dssp CSSSCCCCGGGGG-GCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred hccCCccCHHHHH-hCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHH
Confidence 4578999999995 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHH
Q 019442 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (341)
Q Consensus 225 cLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~ 304 (341)
|||||||+||.++++++++.++..++..+.... ..+..+++|+.+|+.||++|+|++.+++|+.||.+|++.
T Consensus 90 cL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~ 161 (258)
T 2i53_A 90 CLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQ--------FGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ 161 (258)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGG--------GCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred HHHHHHccccccccHHHHHHHHHHHhchhhhhh--------hhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHH
Confidence 999999999999999999998765543321100 001247899999999999999999999999999999999
Q ss_pred cCCCHH---HHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHh
Q 019442 305 LGLSQT---VLVNLALNLVSEGFASCL-----QHGLATGALKHA 340 (341)
Q Consensus 305 L~ls~~---~l~q~A~~ilnDsl~T~L-----Ps~IAaAaIyLA 340 (341)
++.+.+ .+.+.||.++++++.+++ |++||+||||+|
T Consensus 162 l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA 205 (258)
T 2i53_A 162 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLA 205 (258)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHH
Confidence 998763 589999999999998865 999999999998
No 3
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=297.91 Aligned_cols=189 Identities=25% Similarity=0.346 Sum_probs=166.5
Q ss_pred CCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHH
Q 019442 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA 225 (341)
Q Consensus 146 ~~~w~ft~eEl~~~sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAc 225 (341)
.++|+||++||++..++..+|+++++|..+|..+++||.++|.+|+|++.|++||++||||||+++++.++++++|++||
T Consensus 13 ~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~ac 92 (285)
T 3rgf_B 13 YLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTC 92 (285)
T ss_dssp HHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred cCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHH
Confidence 46799999999875555789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCC-ChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHH
Q 019442 226 LFLAAKSEETPR-PLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (341)
Q Consensus 226 LFLA~KvEE~pr-kLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~ 304 (341)
||||||+||+++ .+++|+.++..+..... ++.. .+.|+..+++|+.+|+.||++|+|+|.+++||.||.+|++.
T Consensus 93 LfLA~K~EE~~~~~~~di~~~~~~~~k~~~----~~~~-~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~ 167 (285)
T 3rgf_B 93 VFLASKVEEFGVVSNTRLIAAATSVLKTRF----SYAF-PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD 167 (285)
T ss_dssp HHHHHHHTTSCCCCHHHHHHHHHHHHHHHC----TTTC-CSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHH
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHcccc----cccC-chhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHH
Confidence 999999999988 58999988766543211 1111 12233357899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHh
Q 019442 305 LGLSQTVLVNLALNLVSEGFASCL-----QHGLATGALKHA 340 (341)
Q Consensus 305 L~ls~~~l~q~A~~ilnDsl~T~L-----Ps~IAaAaIyLA 340 (341)
++.+. .+.+.||.+++|++++++ |++||+||||+|
T Consensus 168 l~~~~-~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA 207 (285)
T 3rgf_B 168 MGQED-MLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA 207 (285)
T ss_dssp HTCHH-HHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHH
T ss_pred hCCCH-HHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHH
Confidence 99876 589999999999999875 999999999998
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4.6e-38 Score=308.17 Aligned_cols=191 Identities=29% Similarity=0.426 Sum_probs=172.1
Q ss_pred CCCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHH
Q 019442 145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA 224 (341)
Q Consensus 145 ~~~~w~ft~eEl~~~sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaA 224 (341)
+..+||||++||+ .+||+.+||++++|..+|..+++||.+++..|+|++.|+++|++||||||.++++.++++++|++|
T Consensus 8 ~~~~wlft~eeL~-~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~a 86 (358)
T 2pk2_A 8 NNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPA 86 (358)
T ss_dssp CCSSSSCCSHHHH-TCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred CCCCceeCHHHHH-hChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 4678999999995 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHH
Q 019442 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (341)
Q Consensus 225 cLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~ 304 (341)
|||||||+||.+++++||+.+++.+.++.... .....+.|+..+++|+.+|+.||++|+|+|.+++|+.||.+|++.
T Consensus 87 cLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~---~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~ 163 (358)
T 2pk2_A 87 ALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL---PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQL 163 (358)
T ss_dssp HHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC---CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhcccccc---ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHH
Confidence 99999999999999999998887766543221 112345676678999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh-hhH-----HHHHHHHHHHHh
Q 019442 305 LGLSQTVLVNLALNLVSEGFA-SCL-----QHGLATGALKHA 340 (341)
Q Consensus 305 L~ls~~~l~q~A~~ilnDsl~-T~L-----Ps~IAaAaIyLA 340 (341)
++.+.+ +.++||.+++++++ +++ |++||+||||+|
T Consensus 164 l~~~~~-l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA 204 (358)
T 2pk2_A 164 VRASKD-LAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLA 204 (358)
T ss_dssp TTCCHH-HHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTH
T ss_pred cCCCHH-HHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHH
Confidence 998874 89999999999984 553 999999999998
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=272.63 Aligned_cols=172 Identities=25% Similarity=0.385 Sum_probs=152.9
Q ss_pred CCCccccHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCc-cchhHHHHH
Q 019442 146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHAC-HDRFIIATA 224 (341)
Q Consensus 146 ~~~w~ft~eEl~~~sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~-~d~~lVAaA 224 (341)
-++|+||++||+ .+|+..++ + |..+++||.++|..|+||+.|+++|++|||||+.++++.+ +++++|++|
T Consensus 7 ~~~w~ft~~~l~-~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~a 77 (235)
T 1zp2_A 7 LTQLFLSTDLES-LEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVAT 77 (235)
T ss_dssp GTGGGSCSSCTT-SSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHH
T ss_pred CCCCccCHHHHH-HCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 468999999996 56665442 2 9999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHH
Q 019442 225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (341)
Q Consensus 225 cLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~ 304 (341)
|||||||+||++++++|++.++..+... .+...+++|+.+|+.||++|+|++.+++|+.||.+|++.
T Consensus 78 cL~lA~K~Ee~~~~l~d~~~~~~~~~~~-------------~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~ 144 (235)
T 1zp2_A 78 CIYLSCKVEECPVHIRTICNEANDLWSL-------------KVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD 144 (235)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHTTCCC-------------SSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHT
T ss_pred HHHHHhccccCcccHHHHHHHHHHHccc-------------hhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHH
Confidence 9999999999999999999887543210 011236899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHh
Q 019442 305 LGLSQTVLVNLALNLVSEGFASCL-----QHGLATGALKHA 340 (341)
Q Consensus 305 L~ls~~~l~q~A~~ilnDsl~T~L-----Ps~IAaAaIyLA 340 (341)
++++.+ +.+.||.++++++++++ |++||+||||+|
T Consensus 145 ~~~~~~-~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA 184 (235)
T 1zp2_A 145 GIINQK-QLEFAWSIVNDSYASSLCLMAHPHQLAYAALLIS 184 (235)
T ss_dssp TSSCHH-HHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHH
Confidence 998874 88999999999998875 999999999998
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=3.5e-34 Score=276.97 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=156.1
Q ss_pred CCCCccccH-HHHHHh------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Q 019442 145 DDEPVFMSR-DEIERF------------------SPSRKDGIDALRETHLRYSYCAFIQNLGLRLE--LPQTTIGTAMVL 203 (341)
Q Consensus 145 ~~~~w~ft~-eEl~~~------------------sPS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~--Lp~~tiaTA~v~ 203 (341)
+-..|+||. ++|.+. .+|..+|+++++|..+|..+++||.++|..|+ ||+.|++||++|
T Consensus 7 q~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~ 86 (323)
T 1jkw_A 7 QKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMY 86 (323)
T ss_dssp ----CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899995 777532 26789999999999999999999999999999 999999999999
Q ss_pred HHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHH
Q 019442 204 CHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILT 283 (341)
Q Consensus 204 fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~ 283 (341)
|||||+++++.++++++|++||||||||+||+++++++++.++. . +......++++|+.+|+.||+
T Consensus 87 ~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-----~---------~p~~~~~~~~~Il~~E~~iL~ 152 (323)
T 1jkw_A 87 FKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-----E---------SPLGQEKALEQILEYELLLIQ 152 (323)
T ss_dssp HHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS-----S---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc-----c---------ChhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999975321 0 111123468999999999999
Q ss_pred HcCCCcccCCcHHHHHHHHHHc-----CCC-HHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHh
Q 019442 284 TLNFELNVQHPYDPLTSILNKL-----GLS-QTVLVNLALNLVSEGFASCL-----QHGLATGALKHA 340 (341)
Q Consensus 284 tL~FdL~v~~P~~~L~~~l~~L-----~ls-~~~l~q~A~~ilnDsl~T~L-----Ps~IAaAaIyLA 340 (341)
+|+|+|.++|||.||.+|+..+ ++. .+.+.+.||.+++|++.+++ |++||+||||+|
T Consensus 153 ~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA 220 (323)
T 1jkw_A 153 QLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSS 220 (323)
T ss_dssp HTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHH
T ss_pred HCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999776 342 34688999999999999875 999999999998
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=3.8e-28 Score=219.53 Aligned_cols=143 Identities=18% Similarity=0.261 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHhhhhch
Q 019442 176 RYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNI 255 (341)
Q Consensus 176 R~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~~k~~~ 255 (341)
...++++|.++|..|+||+.|++||++|||||+.++++++++++.|++||||+|||+||.|++++||+.++. .
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~--~----- 77 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR--I----- 77 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS--S-----
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC--C-----
Confidence 346999999999999999999999999999999999999999999999999999999999999999987643 0
Q ss_pred hhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhH-----HH
Q 019442 256 TLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGFASCL-----QH 330 (341)
Q Consensus 256 ~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl~T~L-----Ps 330 (341)
.+++|..+|+.||++|+|++.+.+|+.||.+|++.++++.+ +.+.||.++++++.+++ |+
T Consensus 78 --------------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~~~~~~l~~g~~P~ 142 (207)
T 1c9b_A 78 --------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARKAVELDLVPGRSPI 142 (207)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTCSTTCCHH
T ss_pred --------------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCccCCCChH
Confidence 14578999999999999999999999999999999999874 88999999999998875 99
Q ss_pred HHHHHHHHHh
Q 019442 331 GLATGALKHA 340 (341)
Q Consensus 331 ~IAaAaIyLA 340 (341)
+||+||||+|
T Consensus 143 ~IAaAaiylA 152 (207)
T 1c9b_A 143 SVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 8
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=228.49 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=142.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCCh
Q 019442 161 PSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPL 239 (341)
Q Consensus 161 PS~~~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkL 239 (341)
|+..++++++.+..+|..+++||.+++..|+|+++|+++|++||+||+.++++.+.+.++||+||||||||+||. ++++
T Consensus 56 ~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~ 135 (306)
T 3g33_B 56 ASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 (306)
T ss_dssp SCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCT
T ss_pred cHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 345677777777889999999999999999999999999999999999999999999999999999999999985 6799
Q ss_pred hHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCH---HHHHHHH
Q 019442 240 NDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQ---TVLVNLA 316 (341)
Q Consensus 240 rdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~---~~l~q~A 316 (341)
++++..+...+ .+++|++||+.||++|+|+|.+++|+.||..|++.++.+. ..+.+.|
T Consensus 136 ~~l~~~~~~~~-------------------~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a 196 (306)
T 3g33_B 136 EKLCIYTDHAV-------------------SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHA 196 (306)
T ss_dssp THHHHHTTTSS-------------------CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHH
T ss_pred HHHHHHhccCc-------------------cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHH
Confidence 99887643211 2578999999999999999999999999999999998753 2356789
Q ss_pred HHHHHHHHhhhH-----HHHHHHHHHHHhC
Q 019442 317 LNLVSEGFASCL-----QHGLATGALKHAK 341 (341)
Q Consensus 317 ~~ilnDsl~T~L-----Ps~IAaAaIyLA~ 341 (341)
+.++++++.+.. |++||+|||++|.
T Consensus 197 ~~~l~lsl~d~~~l~~~PS~IAaAai~lA~ 226 (306)
T 3g33_B 197 QTFLALCATDYTFAMYPPSMIATGSIGAAV 226 (306)
T ss_dssp HHHHHHHHHCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHH
Confidence 999999887643 9999999999983
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.94 E-value=3.7e-27 Score=221.84 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCChhHHHHHHHH
Q 019442 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSE 248 (341)
Q Consensus 170 e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi~v~~~ 248 (341)
+....+|..+++||.+++..++|+++|+++|+.|||||+.+.++.+.+.+++++||||||||+||. +++++|++.++..
T Consensus 32 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~ 111 (269)
T 2b9r_A 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN 111 (269)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC
Confidence 345578999999999999999999999999999999999999999999999999999999999998 7899999876421
Q ss_pred HhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhH
Q 019442 249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGFASCL 328 (341)
Q Consensus 249 l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl~T~L 328 (341)
. | .+++|+++|+.||++|+|++.+++|+.||.++++.++.+.+ +.++|+.++++++.+..
T Consensus 112 ~-----------------~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~-~~~~a~~l~e~sl~~~~ 171 (269)
T 2b9r_A 112 T-----------------Y--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVE-QHTLAKYLMELTMLDYD 171 (269)
T ss_dssp S-----------------S--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHH-HHHHHHHHHHHGGGCGG
T ss_pred C-----------------C--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhhh
Confidence 1 1 26799999999999999999999999999999999998874 88899999999987653
Q ss_pred -----HHHHHHHHHHHhC
Q 019442 329 -----QHGLATGALKHAK 341 (341)
Q Consensus 329 -----Ps~IAaAaIyLA~ 341 (341)
|+.||+|||++|.
T Consensus 172 ~~~~~Ps~iAaAai~lA~ 189 (269)
T 2b9r_A 172 MVHFPPSQIAAGAFSLAL 189 (269)
T ss_dssp GSSSCTTHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHH
Confidence 9999999999983
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.94 E-value=7.3e-27 Score=218.55 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCChhHHHHHHHH
Q 019442 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASSE 248 (341)
Q Consensus 170 e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi~v~~~ 248 (341)
+....+|..+++||.+++..++|+++|+++|+.|||||+.+.++.+.+.+++|+||||||||+||. +++++|++.++..
T Consensus 33 ~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~ 112 (260)
T 2cch_B 33 DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD 112 (260)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC
Confidence 344567999999999999999999999999999999999999999999999999999999999998 8999999876431
Q ss_pred HhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh-h
Q 019442 249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGFAS-C 327 (341)
Q Consensus 249 l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl~T-~ 327 (341)
. | .+++|+++|+.||++|+|++.+++|+.||.+|++.++.+...+.++|+.++++++.+ .
T Consensus 113 ~-----------------~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~ 173 (260)
T 2cch_B 113 T-----------------Y--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDAD 173 (260)
T ss_dssp S-----------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHH
T ss_pred C-----------------c--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHH
Confidence 1 1 267999999999999999999999999999999999987645889999999998754 2
Q ss_pred -H----HHHHHHHHHHHhC
Q 019442 328 -L----QHGLATGALKHAK 341 (341)
Q Consensus 328 -L----Ps~IAaAaIyLA~ 341 (341)
. |+.||+|||++|.
T Consensus 174 ~~~~~~Ps~iAaAai~lA~ 192 (260)
T 2cch_B 174 PYLKYLPSVIAGAAFHLAL 192 (260)
T ss_dssp HHTTSCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH
Confidence 2 9999999999983
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.94 E-value=3.7e-27 Score=221.78 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCChhHHHH
Q 019442 166 GIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLR 244 (341)
Q Consensus 166 GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi~ 244 (341)
+++++....+|..+++||.+++..+++++.|+++|++||+||+.+.++.+.+.++||+||||||||+||. |+++++++.
T Consensus 47 ~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~ 126 (271)
T 2w96_A 47 CVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCI 126 (271)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred hcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3444455678999999999999999999999999999999999999999999999999999999999998 999999987
Q ss_pred HHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHHH---HHHHHHHHHH
Q 019442 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTV---LVNLALNLVS 321 (341)
Q Consensus 245 v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~~---l~q~A~~iln 321 (341)
++... | .+++|+++|+.||++|+|++.+++|+.||..|++.++.+.+. +.+.|+.+++
T Consensus 127 ~~~~~-----------------~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~ 187 (271)
T 2w96_A 127 YTDNS-----------------I--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVA 187 (271)
T ss_dssp HTTTS-----------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCC-----------------C--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 54211 1 267999999999999999999999999999999999987642 3467999999
Q ss_pred HHHhhh--H---HHHHHHHHHHHhC
Q 019442 322 EGFASC--L---QHGLATGALKHAK 341 (341)
Q Consensus 322 Dsl~T~--L---Ps~IAaAaIyLA~ 341 (341)
+++.+. + |++||+||||+|.
T Consensus 188 ~~~~d~~~~~~~PS~iAaAai~lA~ 212 (271)
T 2w96_A 188 LCATDVKFISNPPSMVAAGSVVAAV 212 (271)
T ss_dssp HHHTSTHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHH
Confidence 887653 2 9999999999983
No 12
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=1.6e-26 Score=215.81 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=143.4
Q ss_pred cccHHHHHHhCCCcc--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHH
Q 019442 150 FMSRDEIERFSPSRK--DGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALF 227 (341)
Q Consensus 150 ~ft~eEl~~~sPS~~--~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLF 227 (341)
++-..|. +..|+.. .+.+++....+|...++||.+++..++|+++|+++|+.||+||+.++++.+.+.+++|+||||
T Consensus 24 ~l~~~E~-~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~ 102 (257)
T 1g3n_C 24 NILEIEP-RFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLL 102 (257)
T ss_dssp HHHHHGG-GGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 3444443 3455431 233444556789999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCC-CCChhHHHHHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcC
Q 019442 228 LAAKSEET-PRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLG 306 (341)
Q Consensus 228 LA~KvEE~-prkLrdIi~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ 306 (341)
||||+||. ++++++++.++... | .+++|+++|+.||++|+|++.+++|+.||..|++.++
T Consensus 103 iA~K~eE~~~p~~~d~~~~~~~~-----------------~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~ 163 (257)
T 1g3n_C 103 VASKLRSLTPISTSSLCYAAADS-----------------F--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLV 163 (257)
T ss_dssp HHHHHHCSSCCCHHHHHHHTTTC-----------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHS
T ss_pred HHHHHccccCCCHHHHHHHHCCC-----------------C--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC
Confidence 99999996 89999998764321 1 2679999999999999999999999999999999998
Q ss_pred CCHH---HHHHHHHHHHHHHHhhh--H---HHHHHHHHHHHhC
Q 019442 307 LSQT---VLVNLALNLVSEGFASC--L---QHGLATGALKHAK 341 (341)
Q Consensus 307 ls~~---~l~q~A~~ilnDsl~T~--L---Ps~IAaAaIyLA~ 341 (341)
.+.+ .+.+.|+.++++++.+. + |+.||+|||++|.
T Consensus 164 ~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~ 206 (257)
T 1g3n_C 164 GGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLV 206 (257)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHH
Confidence 7643 34678999999988754 2 9999999999984
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.94 E-value=8.3e-27 Score=217.47 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCChhHHHH
Q 019442 166 GIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVLR 244 (341)
Q Consensus 166 GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi~ 244 (341)
+.+++....+|...++||.+++..++|+++|+++|+.|++||+.++++.+.+.+++|+||||||||+||. ++++++++.
T Consensus 42 ~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~ 121 (254)
T 2f2c_A 42 EIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTY 121 (254)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHST
T ss_pred hcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 4455566788999999999999999999999999999999999999999999999999999999999995 889999875
Q ss_pred HHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHH---HHHHHHHHHHH
Q 019442 245 ASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLVS 321 (341)
Q Consensus 245 v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~---~l~q~A~~iln 321 (341)
.+... | .+++|++||+.||++|+|++.+++|+.||..|++.++.+.+ .+.+.|+.+++
T Consensus 122 ~~~~~-----------------~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~ 182 (254)
T 2f2c_A 122 LSCDC-----------------F--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTIC 182 (254)
T ss_dssp TC--------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred HhCCC-----------------C--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHH
Confidence 43211 1 26799999999999999999999999999999999988753 24567999999
Q ss_pred HHHhhhH-----HHHHHHHHHHHhC
Q 019442 322 EGFASCL-----QHGLATGALKHAK 341 (341)
Q Consensus 322 Dsl~T~L-----Ps~IAaAaIyLA~ 341 (341)
+++.+.. |+.||+|||++|.
T Consensus 183 ~~l~d~~~~~~~PS~iAaAai~la~ 207 (254)
T 2f2c_A 183 KALIQPNIALLSPGLICAGGLLTTI 207 (254)
T ss_dssp HHTTSGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHcCcchhccCHHHHHHHHHHHHH
Confidence 8887542 9999999999983
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.92 E-value=7.3e-25 Score=196.82 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHh
Q 019442 171 RETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELY 250 (341)
Q Consensus 171 ~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~ 250 (341)
.|..++ .++++|.++|..|+||+.|+.+|+.||+||+..+.+++.++..|++||||+|||.|+.|++++||..++..
T Consensus 5 ~er~l~-~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v-- 81 (200)
T 1ais_B 5 AERNLA-FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV-- 81 (200)
T ss_dssp ---CHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS--
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC--
Confidence 345554 69999999999999999999999999999999999999999999999999999999999999999987430
Q ss_pred hhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCccc--CCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhH
Q 019442 251 HKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV--QHPYDPLTSILNKLGLSQTVLVNLALNLVSEGFASCL 328 (341)
Q Consensus 251 ~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v--~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl~T~L 328 (341)
.+.+|..+|+.|++.|||++.+ .+|+.||.+|++.|+++.+ +.+.||.+++++..+.+
T Consensus 82 -------------------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~~~~~~~ 141 (200)
T 1ais_B 82 -------------------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDEAYKRGL 141 (200)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCc
Confidence 1458999999999999999999 9999999999999999975 88999999999988765
Q ss_pred -----HHHHHHHHHHHh
Q 019442 329 -----QHGLATGALKHA 340 (341)
Q Consensus 329 -----Ps~IAaAaIyLA 340 (341)
|+.||+||||+|
T Consensus 142 ~~gr~P~~iAaAaly~A 158 (200)
T 1ais_B 142 TSGKSPAGLVAAALYIA 158 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 999999999998
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.92 E-value=3.8e-24 Score=200.24 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=134.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC-CCChhHHH
Q 019442 165 DGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET-PRPLNDVL 243 (341)
Q Consensus 165 ~GIs~e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi 243 (341)
.+++++....+|...++||.+++..++|.++|+++|+.|++||+.++++...+.+++|+||||||+|+||. |.++++++
T Consensus 38 ~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~ 117 (252)
T 1f5q_B 38 VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA 117 (252)
T ss_dssp SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34455666789999999999999999999999999999999999999999999999999999999999996 77899988
Q ss_pred HHHHHHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHH---HHHHHHHHHH
Q 019442 244 RASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT---VLVNLALNLV 320 (341)
Q Consensus 244 ~v~~~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~---~l~q~A~~il 320 (341)
..+... | .+++|++||..||++|+|++.+++|+.||..|++.++.+.+ .+.+.|+.++
T Consensus 118 ~~~~~~-----------------y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l 178 (252)
T 1f5q_B 118 YLCGGA-----------------T--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKI 178 (252)
T ss_dssp HHHCTT-----------------C--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCC-----------------C--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 764321 1 25799999999999999999999999999999999988764 3556788888
Q ss_pred HHHHhhh--H---HHHHHHHHHHHh
Q 019442 321 SEGFASC--L---QHGLATGALKHA 340 (341)
Q Consensus 321 nDsl~T~--L---Ps~IAaAaIyLA 340 (341)
..++... + |+.||+||+.++
T Consensus 179 ~~~l~d~~~l~~~PS~iAaaa~~~~ 203 (252)
T 1f5q_B 179 FCALCDGRSAMKRPVLITLACMHLT 203 (252)
T ss_dssp HHHHHCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHhchhhhccCHHHHHHHHHHHH
Confidence 8776643 2 999999997543
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.91 E-value=3.1e-24 Score=203.55 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-CCCCccchhHHHHHHHHHhhccCCC-CCChhHHHHHHH
Q 019442 170 LRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVR-RSHACHDRFIIATAALFLAAKSEET-PRPLNDVLRASS 247 (341)
Q Consensus 170 e~E~~lR~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r-~Sl~~~d~~lVAaAcLFLA~KvEE~-prkLrdIi~v~~ 247 (341)
+....+|..+++||.+++..++|+++|+++|+.||+||+.+ +++.+.+.+++|+||||||||+||. ++++++++.++.
T Consensus 44 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~ 123 (283)
T 1w98_B 44 LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD 123 (283)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc
Confidence 34456899999999999999999999999999999999998 6899999999999999999999997 889999986532
Q ss_pred HHhhhhchhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHHcCCCHH----------HHHHHHH
Q 019442 248 ELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQT----------VLVNLAL 317 (341)
Q Consensus 248 ~l~~k~~~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~L~ls~~----------~l~q~A~ 317 (341)
.. | .+++|++||+.||++|+|++.+++|+.||..|++.++++.+ .....+.
T Consensus 124 ~~-----------------~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (283)
T 1w98_B 124 GA-----------------C--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIA 184 (283)
T ss_dssp TS-----------------S--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHH
T ss_pred CC-----------------C--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHH
Confidence 11 1 26799999999999999999999999999999998865321 1223355
Q ss_pred HHHHHHHhhh--H---HHHHHHHHHHHhC
Q 019442 318 NLVSEGFASC--L---QHGLATGALKHAK 341 (341)
Q Consensus 318 ~ilnDsl~T~--L---Ps~IAaAaIyLA~ 341 (341)
.+++.++.+. + |++||+||||+|.
T Consensus 185 ~llelsl~d~~~l~~~PS~iAaAai~la~ 213 (283)
T 1w98_B 185 ELLDLCVLDVDCLEFPYGILAASALYHFS 213 (283)
T ss_dssp HHHHHHHHSGGGGGSCHHHHHHHHHHHTS
T ss_pred HHHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 6777777543 2 9999999999984
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.7e-23 Score=198.81 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHhhhhchh
Q 019442 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (341)
Q Consensus 177 ~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~ 256 (341)
..+...|.++|..|+||+.++.+|+.||+||+..+.+++.+...|++||||+|||.|+.|++++||+.++. +
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~--v------ 198 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--V------ 198 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS--C------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--C------
Confidence 35889999999999999999999999999999999999999999999999999999999999999987643 0
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHHHHHcC------------CCcccCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019442 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLN------------FELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGF 324 (341)
Q Consensus 257 ~~~~~~~~~~~~~~re~Il~~E~~IL~tL~------------FdL~v~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl 324 (341)
.+++|..+++.|++.|+ |++.+.+|+.||.+|++.|+++. ++.+.||.+++++.
T Consensus 199 -------------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-~v~~~A~~i~~~~~ 264 (345)
T 3k7a_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKKCK 264 (345)
T ss_dssp -------------CSHHHHHHHHHHHHHHTCC------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHH
Confidence 13578889999999998 99999999999999999999986 48999999999998
Q ss_pred hhhH-----HHHHHHHHHHHh
Q 019442 325 ASCL-----QHGLATGALKHA 340 (341)
Q Consensus 325 ~T~L-----Ps~IAaAaIyLA 340 (341)
.+.+ |..||+||||||
T Consensus 265 ~~~l~~Gr~P~~IAaAaIylA 285 (345)
T 3k7a_M 265 EIKEIAGKSPITIAVVSIYLN 285 (345)
T ss_dssp ---------------------
T ss_pred HhchhcCCCHHHHHHHHHHHH
Confidence 8765 999999999998
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.74 E-value=1.7e-18 Score=168.76 Aligned_cols=142 Identities=12% Similarity=0.048 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHhhhhchh
Q 019442 177 YSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNIT 256 (341)
Q Consensus 177 ~~~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~ 256 (341)
..+...|.++|..|+||+.+..+|+.||++++..+.+++.....|++||||+|||.|+.|++++||..++. .
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~--v------ 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH--V------ 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT--C------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC--C------
Confidence 45888999999999999999999999999999999999999999999999999999999999999988753 1
Q ss_pred hhcccCChhHHHHHHHHHHHHHHHHHHHcCCC------------cccCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019442 257 LLSYLLPIDWFEQYRERVIEAEQMILTTLNFE------------LNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEGF 324 (341)
Q Consensus 257 ~~~~~~~~~~~~~~re~Il~~E~~IL~tL~Fd------------L~v~~P~~~L~~~l~~L~ls~~~l~q~A~~ilnDsl 324 (341)
.+.+|..+.+.|++.|+.. +...+|..||.+|++.|+++.+ +.+.|+.++..+.
T Consensus 199 -------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~ 264 (345)
T 4bbr_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCK 264 (345)
T ss_dssp -------------CTTHHHHHHHHHHHCC---------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHH
Confidence 1246888888898989864 6778999999999999999874 8899999999877
Q ss_pred hhhH-----HHHHHHHHHHHh
Q 019442 325 ASCL-----QHGLATGALKHA 340 (341)
Q Consensus 325 ~T~L-----Ps~IAaAaIyLA 340 (341)
...+ |..||+||||+|
T Consensus 265 ~~~i~~GR~P~~IAAAaIylA 285 (345)
T 4bbr_M 265 EIKEIAGKSPITIAVVSIYLN 285 (345)
T ss_dssp ---------------------
T ss_pred hcccccCCChHHHHHHHHHHH
Confidence 7654 999999999998
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.07 E-value=1.3e-05 Score=71.00 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHHHhhhhchhhhc
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLS 259 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~l~~k~~~~~~~ 259 (341)
..+|.+++..|+|+..+..+|..++.+.....-+.++.+..||+||||+||+..+.++..++|..++..
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 478999999999999999999999999998877888999999999999999999999999999877531
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHcCCCc
Q 019442 260 YLLPIDWFEQYRERVIEAEQMILTTLNFEL 289 (341)
Q Consensus 260 ~~~~~~~~~~~re~Il~~E~~IL~tL~FdL 289 (341)
...+|...=..|.+.||.++
T Consensus 178 ----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 ----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp ----------CHHHHHHHHHHHHHHHTCCC
T ss_pred ----------CHHHHHHHHHHHHHHcCCCC
Confidence 02356666667777787655
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.48 E-value=0.0004 Score=61.81 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHH
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~ 246 (341)
..+|.+.+..|+++..+..+|..++..-....-+.++.+..||+||||+||+..+.++..+++..++
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~ 169 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIA 169 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHh
Confidence 5789999999999999999999999998887777789999999999999999999999999987664
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.28 E-value=0.0018 Score=61.39 Aligned_cols=104 Identities=9% Similarity=0.005 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCC---CCccchhHHHHHHHHHhhccCCCC-CChhHHHHHHHHHhhhhc
Q 019442 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRS---HACHDRFIIATAALFLAAKSEETP-RPLNDVLRASSELYHKQN 254 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~S---l~~~d~~lVAaAcLFLA~KvEE~p-rkLrdIi~v~~~l~~k~~ 254 (341)
..+||.++...-+++..|+-.|.+|++|+..+.. +.....+-+.++||.||+|+-+.. ..-+...++..
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG------- 149 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG------- 149 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccC-------
Confidence 3468999999999999999999999999987532 345567788899999999987643 33333333211
Q ss_pred hhhhcccCChhHHHHHHHHHHHHHHHHHHHcCCCcccCCcHHHHHHHHHH
Q 019442 255 ITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK 304 (341)
Q Consensus 255 ~~~~~~~~~~~~~~~~re~Il~~E~~IL~tL~FdL~v~~P~~~L~~~l~~ 304 (341)
. ..+++-.+|+.+|..|+|+|.|. +..|...++..
T Consensus 150 -------i-------sl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 150 -------V-------RCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp -------S-------CHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred -------c-------CHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 0 14689999999999999999887 55555444444
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0017 Score=62.67 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHH
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRAS 246 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~ 246 (341)
..+|.+.|..|+|+..+..+|..+..+.....-+.++.+..||+|||||||+..+..++.++|..++
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~ 302 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTL 302 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 5788899999999999999999999998876666788999999999999999988777777776654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.59 E-value=0.0021 Score=62.27 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 019442 179 YCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~ 247 (341)
..++|.+.|..|+|+..+..+|..++++.....-..+..+..||+||||+||+..+..++.++|..++.
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 457899999999999999999999999988766667888999999999999999988888888877653
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.06 E-value=0.096 Score=47.21 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..+|.+.+..++++..+..+|..++..-+....+..+.+..||+|||++|++..+.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 46888888899999999999999999988777778899999999999999997653
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.34 E-value=0.12 Score=48.32 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..+|.+.+..|+++..+...|..++..-+....+..+.+..||+|||+||++..+.
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 46888999999999999999999999887766667889999999999999998764
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=92.12 E-value=5.3 Score=36.01 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcC---CCCccchhHHHHHHHHHhhccCCCCCChhHHHH
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEETPRPLNDVLR 244 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~---Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~ 244 (341)
.+-|+.+.+.-.+|..++.-|+-+.+.|.-.+ ...-..++.||+||+.+|+--...|.++.++.-
T Consensus 16 ~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~ 83 (260)
T 3h4c_A 16 LNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC 83 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 45568899999999999999999999997542 223345789999999999988888999888754
No 27
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.81 E-value=0.26 Score=44.71 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC
Q 019442 180 CAFIQNLGLRLELPQ----TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~----~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..||.+.+..|+.+. .+...|..++..-+....+..+.+..||+|||++|++..+.
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 211 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKF 211 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCC
Confidence 468889999999886 67888888888888777778899999999999999997654
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=90.48 E-value=0.36 Score=44.41 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCCC
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETP 236 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~p 236 (341)
.+||...+..++++..+...|..++..-.....+..+.+..||+|||++|++.-+..
T Consensus 139 ~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 139 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 578889999999999988889888888777777788999999999999999876654
No 29
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=90.16 E-value=0.56 Score=42.53 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cCCCCccchhHHHHHHHHHhhccCCC
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~-r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..||...+..++.+..+..+|..++..-+. ..-+..+.+..||+|||++|++.-+.
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 203 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNW 203 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 468888899999999998999888866653 33356789999999999999998553
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=88.27 E-value=1.5 Score=39.81 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccC
Q 019442 180 CAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~t----iaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvE 233 (341)
.+||......++++..+ ...|..++..-..-..+..+.+..||+|||++|.+..
T Consensus 153 ~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 153 TDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 36788888888888764 3346666665555556678899999999999999985
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=86.34 E-value=0.69 Score=42.18 Aligned_cols=63 Identities=17% Similarity=0.045 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhcCC-CCccchhHHHHHHHHHhhccCCCCCChhHH
Q 019442 180 CAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVRRS-HACHDRFIIATAALFLAAKSEETPRPLNDV 242 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~-~tiaTA~v~fhRFy~r~S-l~~~d~~lVAaAcLFLA~KvEE~prkLrdI 242 (341)
.+||...+..++++. .+...|..+...-..... +..+.+..||+|||++|++.-+.+.-.+++
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l 204 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESL 204 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 578999999999876 777778777776554444 677889999999999999876544333333
No 32
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=86.17 E-value=3.8 Score=32.36 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCC-----CCccchhHHHHHHHHHhhccCCCCCChhHHHH
Q 019442 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRRS-----HACHDRFIIATAALFLAAKSEETPRPLNDVLR 244 (341)
Q Consensus 183 I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~S-----l~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~ 244 (341)
|.++|..|++.+ ++..|..++.+|=..-+ -.+++.=..++||+|.|||.-...+.=..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH
Confidence 678999999988 67778899999864311 11344456789999999998876554444443
No 33
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.68 E-value=0.75 Score=44.37 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cCCCCccchhHHHHHHHHHhhccCCC
Q 019442 180 CAFIQNLGLRLELPQTTIGTAMVLCHRFFV-RRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~tiaTA~v~fhRFy~-r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..||.++...++++..+..+|..++..-+. ..-+..+.+..||+|||+||++.-+.
T Consensus 154 ~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~ 210 (358)
T 2pk2_A 154 HTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW 210 (358)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCC
Confidence 367888888899999998999888877664 33356788999999999999998653
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=82.41 E-value=4.8 Score=36.40 Aligned_cols=57 Identities=16% Similarity=0.003 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCHHH----HHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC
Q 019442 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~~t----iaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
..+||......++++..+ ...|..++..-..-..+..+.+..||+|||++|.+..+.
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 357888888888887654 345666766666666677899999999999999988763
No 35
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=80.23 E-value=6.1 Score=38.94 Aligned_cols=69 Identities=10% Similarity=-0.027 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhc--CCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 019442 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~-~tiaTA~v~fhRFy~r--~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~ 247 (341)
+..-|.++|.+|++++ ++...-.++|+..+.. .-+.+.+..-+.+.|+|.-||+.....+.++|+..+.
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 4456999999999875 3433344455544432 4456777888999999999999998899999998754
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=79.69 E-value=2 Score=40.64 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCCC
Q 019442 191 ELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEET 235 (341)
Q Consensus 191 ~Lp~~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE~ 235 (341)
+.+..+...|..|+..-+....+..+.+..||+|||++|++..+.
T Consensus 182 ~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~ 226 (323)
T 1jkw_A 182 ENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGI 226 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCC
Confidence 445567778888888776665556788999999999999987653
No 37
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=79.22 E-value=7 Score=37.69 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHhh--cCCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 019442 180 CAFIQNLGLRLELPQ-TTIGTAMVLCHRFFV--RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~-~tiaTA~v~fhRFy~--r~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~ 247 (341)
..-|.++|.+|++.. ++.....++|...+. ..-+.+.+..-+.+.|+|.-||+.....+.++|+..+.
T Consensus 219 ~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 219 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 445999999998775 444455556655554 23456777888999999999999998899999998754
No 38
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=78.04 E-value=2.6 Score=38.53 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCHHHH----HHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccC
Q 019442 179 YCAFIQNLGLRLELPQTTI----GTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSE 233 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~~ti----aTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvE 233 (341)
..+||..+...++++..+. ..|..++..-..-..+..+.+..||+|||++|++.-
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 3578888999999987653 345555554433344557889999999999998753
No 39
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=76.02 E-value=11 Score=35.22 Aligned_cols=55 Identities=20% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCHH----HHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhccCC
Q 019442 180 CAFIQNLGLRLELPQT----TIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~~----tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~KvEE 234 (341)
..||..+...++++.. +...|..++..-.....+..+.+..||+|||++|.+.-+
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 3577788888877644 345566666666666677789999999999999998776
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=75.98 E-value=5.6 Score=37.64 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcC---CCCccchhHHHHHHHHHhhccCC-CCCChhHHHHHHH
Q 019442 183 IQNLGLRLELPQTTIGTAMVLCHRFFVRR---SHACHDRFIIATAALFLAAKSEE-TPRPLNDVLRASS 247 (341)
Q Consensus 183 I~~lg~~L~Lp~~tiaTA~v~fhRFy~r~---Sl~~~d~~lVAaAcLFLA~KvEE-~prkLrdIi~v~~ 247 (341)
..++|+.|+|...|...|...|++.-..- +-..-+....-.||||+||...+ ...+|..+++.+.
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 46789999999999999999999976641 11222334445566999997554 6789999988763
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=72.18 E-value=8.9 Score=40.00 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhhc-----CCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 019442 182 FIQNLGLRLELPQTTIGTAMVLCHRFFVR-----RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASS 247 (341)
Q Consensus 182 ~I~~lg~~L~Lp~~tiaTA~v~fhRFy~r-----~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~ 247 (341)
...++|+.|+|...|...|...|...... +++.+...+-.|+ +++.||.+|+...+|..+++.+.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHhc
Confidence 35688999999999999999999998852 3445554554444 57788888999999999998763
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=70.76 E-value=14 Score=38.41 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHhhc--CCCCccchhHHHHHHHHHhhccCCCCCChhHHHHHHHH
Q 019442 179 YCAFIQNLGLRLELPQ-TTIGTAMVLCHRFFVR--RSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSE 248 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~-~tiaTA~v~fhRFy~r--~Sl~~~d~~lVAaAcLFLA~KvEE~prkLrdIi~v~~~ 248 (341)
+..-|.++|.+|++++ .+.....++|+..+.. .-+.+.+..-+.+.|+|.-||+.....+.++|+..+..
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 4566999999998774 3444555566665543 44567778889999999999999988999999987543
No 43
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=61.86 E-value=21 Score=31.34 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.4
Q ss_pred CccchhHHHHHHHHHhhccC
Q 019442 214 ACHDRFIIATAALFLAAKSE 233 (341)
Q Consensus 214 ~~~d~~lVAaAcLFLA~KvE 233 (341)
..++.+.+.+||||||=-..
T Consensus 119 te~eLqa~vLTCLYlsYSYm 138 (208)
T 1unl_D 119 SDHELQAVLLTCLYLSYSYM 138 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 35678889999999986544
No 44
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=49.33 E-value=28 Score=31.89 Aligned_cols=52 Identities=12% Similarity=-0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCH-----------HHHHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhhc
Q 019442 180 CAFIQNLGLRLELPQ-----------TTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231 (341)
Q Consensus 180 ~~~I~~lg~~L~Lp~-----------~tiaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~K 231 (341)
.+||......++++. .+...|..++..-.....+..+.+..||+|||++|+.
T Consensus 152 ~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 152 VSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp HHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC
Confidence 456777766665532 2223344455555544556788999999999999985
No 45
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=31.40 E-value=1.9e+02 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCCHHH----HHHHHHHHHHHhhcCCCCccchhHHHHHHHHHhh
Q 019442 179 YCAFIQNLGLRLELPQTT----IGTAMVLCHRFFVRRSHACHDRFIIATAALFLAA 230 (341)
Q Consensus 179 ~~~~I~~lg~~L~Lp~~t----iaTA~v~fhRFy~r~Sl~~~d~~lVAaAcLFLA~ 230 (341)
...|+......++++... ...|..++.....-..+..+.+..||+||+.++.
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 204 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh
Confidence 356777777888877653 2345555555544455567889999999987776
No 46
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=25.27 E-value=1.8e+02 Score=27.70 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccC--------Cc-------------------HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 019442 269 QYRERVIEAEQMILTTLNFELNVQ--------HP-------------------YDPLTSILNKLGLSQTVLVNLALNLVS 321 (341)
Q Consensus 269 ~~re~Il~~E~~IL~tL~FdL~v~--------~P-------------------~~~L~~~l~~L~ls~~~l~q~A~~iln 321 (341)
..++.+-..|..||+.|-|.-..+ .+ ..-|..+|..|+++..++.+.+|.++.
T Consensus 166 elvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe 245 (347)
T 2r7g_A 166 EMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQ 245 (347)
T ss_dssp HHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 356788889999999999965532 11 223556666676654347778999988
Q ss_pred HHHh--hhH-----HHHHHHHHHHH
Q 019442 322 EGFA--SCL-----QHGLATGALKH 339 (341)
Q Consensus 322 Dsl~--T~L-----Ps~IAaAaIyL 339 (341)
.++. +.| -..|-+.|||.
T Consensus 246 ~~l~~~t~L~~dRHLDQiilCaiY~ 270 (347)
T 2r7g_A 246 HTLQNEYELMRDRHLDQIMMCSMYG 270 (347)
T ss_dssp HHHHHCGGGGTTSCHHHHHHHHHHH
T ss_pred HHHHhChHhhcCCcHHHHHHHHHHH
Confidence 8775 455 77777777775
Done!