BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019443
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 90 LVLVHGILASP------SDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLA 143
++LVHG+ + W + +L++R + +Y ++ + + ++ G +G G++L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGAT---VYVANLSGF-QSDDGPNGRGEQLL 66
Query: 144 NEVMEVVKKTDSLKRISFLAHSLGGLFARYAVAV 177
V V+ T + K ++ + HS GGL +RY AV
Sbjct: 67 AYVKTVLAATGATK-VNLVGHSQGGLTSRYVAAV 99
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 90 LVLVHGILASP------SDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLA 143
++LVHG+ + W + +L++R + +Y ++ + + ++ G +G G++L
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGAT---VYVANLSGF-QSDDGPNGRGEQLL 66
Query: 144 NEVMEVVKKTDSLKRISFLAHSLGGLFARYAVAV 177
V V+ T + K ++ + HS GGL +RY AV
Sbjct: 67 AYVKTVLAATGATK-VNLVGHSQGGLTSRYVAAV 99
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 90 LVLVHGI-----LASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLAN 144
++LVHG+ A+ D+ Y + G+ +Y ++ + + ++ G +G G++L
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAK--VYVANLSGF-QSDDGPNGRGEQLLA 67
Query: 145 EVMEVVKKTDSLKRISFLAHSLGGLFARYAVAV 177
V +V+ T + K ++ + HS GGL +RY AV
Sbjct: 68 YVKQVLAATGATK-VNLIGHSQGGLTSRYVAAV 99
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 90 LVLVHGI-----LASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLAN 144
++LVHG+ A+ D+ Y + G+ +Y ++ + + ++ G +G G++L
Sbjct: 10 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAK--VYVANLSGF-QSDDGPNGRGEQLLA 66
Query: 145 EVMEVVKKTDSLKRISFLAHSLGGLFARYAVAV 177
V +V+ T + K ++ + HS GGL +RY AV
Sbjct: 67 YVKQVLAATGATK-VNLIGHSQGGLTSRYVAAV 98
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 90 LVLVHGI-----LASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLAN 144
++LVHG+ A+ D+ Y + G+ +Y ++ + + ++ G +G G++L
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAK--VYVANLSGF-QSDDGPNGRGEQLLA 67
Query: 145 EVMEVVKKTDSLKRISFLAHSLGGLFARYAVAV 177
V +V+ T + K ++ + HS GGL +RY AV
Sbjct: 68 YVKQVLAATGATK-VNLIGHSQGGLTSRYVAAV 99
>pdb|2AJ3|A Chain A, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|C Chain C, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|E Chain E, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
Length = 213
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 177 VLYSSTAEESGEPVDLADSMRENSLTMCSSRRGTIAGLEPVNFITLATPHLGVRGKKQLP 236
++YS++ +SG P + S T+ TI+GL+P +F T HL K+ P
Sbjct: 46 LMYSASTLQSGVPSRFSGSGSGTEFTL------TISGLQPEDFATYYCQHL-----KRYP 94
Query: 237 FLFG 240
+ FG
Sbjct: 95 YTFG 98
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 90 LVLVHG------ILASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLA 143
+VLVHG I+ P + Y A+ R+ G + S+ F+ + GK+L
Sbjct: 27 IVLVHGLAGFNEIVGFP--YFYGIADALRQDGHQVFTASLSA------FNSNEVRGKQLW 78
Query: 144 NEVMEVVKKTDSLKRISFLAHSLGGLFARYAVAVLYSSTA 183
V ++++T + K+++F+ HS G L RY A S A
Sbjct: 79 QFVQTLLQETQA-KKVNFIGHSQGPLACRYVAANYPDSVA 117
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 121 YASSSNTYTR------------TFSGIDGAGKRLANEVMEVVKKTDSLKRISFLAHSLGG 168
Y+SS+N YT +F+G G R N ME +KK S I H++GG
Sbjct: 215 YSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIK--THAIGG 272
Query: 169 LFARY 173
+R+
Sbjct: 273 DLSRF 277
>pdb|3CFX|A Chain A, Crystal Structure Of M. Acetivorans Periplasmic Binding
Protein Moda/wtpa With Bound Tungstate
pdb|3CFX|B Chain B, Crystal Structure Of M. Acetivorans Periplasmic Binding
Protein Moda/wtpa With Bound Tungstate
Length = 296
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 236 PFLFGVSFLE-----KLALPLAPILVGQTGSQLFLMDGRP 270
P ++GV+ +LA +L+G+TG Q+F+ +G+P
Sbjct: 255 PIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENGQP 294
>pdb|3K6U|A Chain A, M. Acetivorans Molybdate-binding Protein (moda) In
Unliganded Open Form
pdb|3K6V|A Chain A, M. Acetivorans Molybdate-Binding Protein (Moda) In
Citrate-Bound Open Form
pdb|3K6W|A Chain A, Apo And Ligand Bound Structures Of Moda From The Archaeon
Methanosarcina Acetivorans
pdb|3K6X|A Chain A, M. Acetivorans Molybdate-Binding Protein (Moda) In
Molybdate-Bound Close Form With 2 Molecules In
Asymmetric Unit Forming Beta Barrel
pdb|3K6X|B Chain B, M. Acetivorans Molybdate-Binding Protein (Moda) In
Molybdate-Bound Close Form With 2 Molecules In
Asymmetric Unit Forming Beta Barrel
Length = 354
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 236 PFLFGVSFLE-----KLALPLAPILVGQTGSQLFLMDGRPDKPPLL 276
P ++GV+ +LA +L+G+TG Q+F+ +G+P P +
Sbjct: 293 PIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENGQPPIVPAI 338
>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
pdb|1YBY|B Chain B, Conserved Hypothetical Protein Cth-95 From Clostridium
Thermocellum
Length = 215
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 196 MRENSLTMCSSRRGTIAGLEPVNFITL 222
++EN + S +G + G+EP NF+ L
Sbjct: 135 VKENEIVKVLSHKGNVFGIEPPNFVEL 161
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 22/121 (18%)
Query: 90 LVLVHGILASPS----DWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGA---GKRL 142
+VL HG+L + D+ + RR G+ Y S +D + G++L
Sbjct: 10 IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQ---------VYVTEVSQLDTSEVRGEQL 60
Query: 143 ANEVMEVVKKTDSLKRISFLAHSLGGLFARYAVAVLYS--STAEESGEP---VDLADSMR 197
+V E+V + K ++ + HS GG RY AV ++A G P D AD +R
Sbjct: 61 LQQVEEIVALSGQPK-VNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSDTADFLR 119
Query: 198 E 198
+
Sbjct: 120 Q 120
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 77 RGTLNGKNKPDHLLVLVHGILASPSDWTYAEAELKRRLGSNFLIYASSSNT-----YTRT 131
R +N + ++L HG + W + EL+++ Y S + T+
Sbjct: 18 RNNINITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESFSTKR 77
Query: 132 FSGIDGAGKRLANEVMEVVKKTDSLKRISFLAHSLGGLFARYA 174
+S ++G K +V E++ D L +S + HS+ + A A
Sbjct: 78 YSSLEGYAK----DVEEILVALD-LVNVSIIGHSVSSIIAGIA 115
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 90 LVLVHGILASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLANEVMEV 149
+V+VHGI S S++ ++ L + S +YA + + +T + + G L+ V +V
Sbjct: 6 VVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAV--DFWDKTGTNYNN-GPVLSRFVQKV 62
Query: 150 VKKTDSLKRISFLAHSLGGLFARYAVAVL 178
+ +T + K++ +AHS+GG Y + L
Sbjct: 63 LDETGA-KKVDIVAHSMGGANTLYYIKYL 90
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 90 LVLVHGILASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLANEVMEV 149
+V+VHGI S S++ ++ L + S +YA + + +T + + G L+ V +V
Sbjct: 6 VVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAV--DFWDKTGTNYNN-GPVLSRFVQKV 62
Query: 150 VKKTDSLKRISFLAHSLGGLFARYAVAVL 178
+ +T + K++ +AHS+GG Y + L
Sbjct: 63 LDETGA-KKVDIVAHSMGGANTLYYIKYL 90
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 90 LVLVHGILASPSDWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLANEVMEV 149
+V+VHGI + S++ ++ L + S +YA + + +T + + G L+ V +V
Sbjct: 6 VVMVHGIGGASSNFAGIKSYLVSQGWSRDKLYAV--DFWDKTGTNYNN-GPVLSRFVQKV 62
Query: 150 VKKTDSLKRISFLAHSLGGLFARYAVAVL 178
+ +T + K++ +AHS+GG Y + L
Sbjct: 63 LDETGA-KKVDIVAHSMGGANTLYYIKYL 90
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 102 DWTYAEAELKRRLGSNFLIYASSSNTYTRTFSGIDGAGKRLANEVMEVVKKTDSLKRISF 161
DWT A+ +RRLG N I + + G+ + + N + + VKK K I
Sbjct: 274 DWTVDMADGRRRLGPNVAIQGNVDPGV------LFGSKEFITNRINDTVKKAGKGKHILN 327
Query: 162 LAHSL 166
L H +
Sbjct: 328 LGHGI 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,083,358
Number of Sequences: 62578
Number of extensions: 342259
Number of successful extensions: 834
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 19
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)