BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019444
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 85 KILHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDL 144
+ ++L RHG+ HN++G G D+ LS G + L K VE L DL
Sbjct: 247 RTIYLCRHGENEHNLQGRIG---------GDSGLSSRGKKFASALSKFVEEQNLK---DL 294
Query: 145 -VITSPLLRTLQTA 157
V TS L T+QTA
Sbjct: 295 RVWTSQLKSTIQTA 308
>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422
Length = 172
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 87 LHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVI 146
L+L+RHG G E L+QE G Q+ + R+ G ++ DL++
Sbjct: 3 LYLIRHGIAEAQKTGIKDEERELTQE---------GKQKTEKVAYRLVKLG--RQFDLIV 51
Query: 147 TSPLLRTLQTA 157
TSPL+R QTA
Sbjct: 52 TSPLIRARQTA 62
>pdb|3C7T|A Chain A, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|B Chain B, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|C Chain C, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|D Chain D, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
Length = 263
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 115 DAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVFGGDGESQTDGIDA 174
D L+ LGW Q + + + +G++ I V SP LR ++TA G G + I
Sbjct: 57 DTPLTRLGWFQAQLVGEGMRMAGVS--IKHVYASPALRCVETAQGFLDGLRADPSVKIKV 114
Query: 175 HPSLTATATVNCPPII----AVELCRERLGV 201
P L + P I +ELC+ L V
Sbjct: 115 EPGLFEFKNWHMPKGIDFMTPIELCKAGLNV 145
>pdb|4ES8|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES8|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P212121
pdb|4ES9|A Chain A, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|B Chain B, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|C Chain C, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
pdb|4ES9|D Chain D, Crystal Structure Of The Adhesin Domain Of Epf From
Streptococcus Pyogenes In P21
Length = 320
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 279 LLNDCQTSPNQELCPRFTNCEIRSVVIVDQSIRGSCYPGTISGELRLPADVAKENIPREE 338
LL+ + P +L F N +I V Q +G Y G + +L L +D + N +E
Sbjct: 190 LLSKVEKKPQGDLDVEFKNLKIIDVTNPSQLDKGVAYVGNKNVQLTLKSDDGRTNFEGDE 249
Query: 339 VS 340
+S
Sbjct: 250 IS 251
>pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 65 VSFAALDAATAKHLYSLQHCKILHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPL--- 121
V+ ++ ATA + + I + V+ QG + NN P +L HL+P
Sbjct: 36 VAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLH 95
Query: 122 ------GWQQVGNLRKRVEASGLTQKIDLVITS 148
GW VGN+R R+ +G +I S
Sbjct: 96 LSQMYNGW--VGNMRVRIMLAGNAFTAGKIIVS 126
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 104 GPEALLS--QEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVF 161
GPEA+ + ++ F H+ + + + +RV +SG TQ+ DL TA+G F
Sbjct: 47 GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFTQRPDL-----------TAIGAF 95
Query: 162 GG 163
G
Sbjct: 96 SG 97
>pdb|2L82|A Chain A, Solution Nmr Structure Of De Novo Designed Protein, P-Loop
Ntpase Fold, Northeast Structural Genomics Consortium
Target Or32
Length = 162
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 205 DKRRSISEYHSLFPAIDFKLIESEDDKLWKADAREPFEEVTARGME 250
D R +I E +P +D +I + DDK W D EE RG+E
Sbjct: 63 DFRENIREIWERYPQLDVVVIVTTDDKEWIKDF---IEEAKERGVE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,486,066
Number of Sequences: 62578
Number of extensions: 356317
Number of successful extensions: 774
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 11
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)