BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019445
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/335 (82%), Positives = 300/335 (89%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT VV
Sbjct: 63 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 123 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 242
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVR+EK A+Y+ IK+AIK SEGKLKGI+GY EED+VSTDFVGDSRSSIFDAKAG
Sbjct: 243 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAG 302
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
IAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 303 IALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/335 (82%), Positives = 300/335 (89%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 2 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT VV
Sbjct: 62 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 121
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPSKDAPMFV GVNE +Y ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 122 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 181
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 182 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVR+EK A+Y+ IK+AIK SEGKLKGI+GY EED+VSTDFVGDSRSSIFDAKAG
Sbjct: 242 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAG 301
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
IAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 302 IALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 336
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+KV+
Sbjct: 2 KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKVE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
VDLTVRL KE +Y++IK A+K SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
LSK FVK+VSWYDNE+GYS RVIDLI HM K +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/334 (67%), Positives = 266/334 (79%), Gaps = 3/334 (0%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
VDLTVRL KE +Y++IK A+K SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
LSK FVK+VSWYDNE+GYS RVIDLI HM K +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL ++VAVNDPFI+ +YM YMFKYDS HG +K E+K++
Sbjct: 3 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 60
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT VVIS
Sbjct: 61 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
VDLTVRL KE +Y++IK A+K SEG L+G LGYTE+DVVS+DF+GD+RSSIFDAKAGI
Sbjct: 240 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQ 299
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
LSK FVK+VSWYDNE+GYS RVIDL+ HM K +
Sbjct: 300 LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDS 333
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL ++VAVNDPFI+ +YM YMFKYDS HG +K E+K++
Sbjct: 2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT VVIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
VDLTVRL KE +Y++IK A+K SEG L+G LGYTE+DVVS+DF+GD+RSSIFDAKAGI
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
LSK FVK+VSWYDNE+GYS RVIDL+ HM K +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDS 332
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/334 (67%), Positives = 265/334 (79%), Gaps = 3/334 (0%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
KIGINGFGRIGRLV R AL+ ++VAVNDPFI+ +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D ++ G+K + VF PE IPW+K GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
APS DAPMFV GVN ++Y ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
VDLTVRL KE +Y++IK A+K SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
LSK FVK+VSWYDNE+GYS RVIDLI HM K +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/332 (65%), Positives = 261/332 (78%), Gaps = 2/332 (0%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY YMFKYDS HG++ E+
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 67
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+K ++ K +A + R+P +PW + + ++STGVF VVI
Sbjct: 68 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
VVDLTV+L KE TY+EIK +K +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGI 307
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
LS FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 308 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 339
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/332 (65%), Positives = 261/332 (78%), Gaps = 2/332 (0%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY YMFKYDS HG++ E+
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+K ++ K +A + R+P +PW + + ++STGVF VVI
Sbjct: 60 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
+APS APMFV+GVNE++Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
VVDLTV+L KE TY+EIK +K +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGI 299
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
LS FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 300 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/335 (64%), Positives = 259/335 (77%), Gaps = 2/335 (0%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++ H +K
Sbjct: 6 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 64
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
++ K ++ G P+ +F R+P +I W GAEYVVESTGVFT V+
Sbjct: 65 AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 123
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 124 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 183
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 184 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 243
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLT RLEK A Y++IK +K+ SEG LKGILGYTE VVS+DF D+ SS FDA AG
Sbjct: 244 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG 303
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
IAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA +
Sbjct: 304 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 338
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/335 (64%), Positives = 259/335 (77%), Gaps = 2/335 (0%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G+NGFGRIGRLV R A V++VA+NDPFI +YM YMF+YDS HG++ H +K
Sbjct: 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 61
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
++ K ++ G P+ +F R+P +I W GAEYVVESTGVFT V+
Sbjct: 62 AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN ++Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 181 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 240
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLT RLEK A Y++IK +K+ SEG LKGILGYTE VVS+DF D+ SS FDA AG
Sbjct: 241 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG 300
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
IAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA +
Sbjct: 301 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/335 (65%), Positives = 263/335 (78%), Gaps = 3/335 (0%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G + + I INGFGRIGRLV R+AL+R ++++VA+NDPFIS DY YMFKYDS HG++K
Sbjct: 11 GIQMVSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYK-G 69
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E+ D L+ K VAVF ++P +PW K G + V+STGVF
Sbjct: 70 EVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAK 128
Query: 123 XVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
VVI+APSK APMFVVGVNE +Y E IVSNASCTTNCLAP+AK+I+D+FGI EGLMTT
Sbjct: 129 KVVITAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTT 187
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
VHSITATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPT
Sbjct: 188 VHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 247
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
DVSVVDLTV+L K ATY+EIK A+K+ SEGKLK ++GYTE+ VVS+DF+GD+ S+IFDA
Sbjct: 248 TDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDA 307
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
AGI LS FVKLV+WYDNE+GYS+RV+DL+ H+A
Sbjct: 308 AAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/334 (64%), Positives = 257/334 (76%), Gaps = 2/334 (0%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+G+NGFGRIGRLV R A V++VA+NDPFI YM YMF+YDS HG++ H +K
Sbjct: 1 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ K ++ G K + +F R+P I W GAEYVVESTGVFT V+I
Sbjct: 60 ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
SAPS DAPMFV+GVN ++Y L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
VVDLT RLEK A Y++IK +K+ SEG LKGILGYTE+ VVS DF D+ SS FDA AGI
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI 298
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
AL+ +FVKL+SWYDNE+GYS+RV+DL+VHMA +
Sbjct: 299 ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 332
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/335 (63%), Positives = 255/335 (76%), Gaps = 2/335 (0%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
K+K+G++GFGRIGRLV R A V++VA+NDPFI YM YMF+YDS HG++ H +K
Sbjct: 2 KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVK 60
Query: 66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
+D K ++ G K + +F R+PE I W G YVVESTGVFT +V
Sbjct: 61 AEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIV 119
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
ISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 120 ISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 179
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGM+FRVPT +V
Sbjct: 180 ITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANV 239
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SV+DLT RLEK A Y++IK +KE SEG LKGILGYTE++VVS DF G + SSIFDA AG
Sbjct: 240 SVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAG 299
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
I L+ FVKLVSWYDNE+GYS RV+DL+ HMA +
Sbjct: 300 IELNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE 334
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/331 (63%), Positives = 256/331 (77%), Gaps = 4/331 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGRLV RV +++ V +VAVNDPFI +YM YMFKYDS HG++K ++
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEH 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
K+ + L+ + VF + P+EIPW+ G YVVE+TGV+ V++
Sbjct: 60 KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 127 SAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+APS DAPM V+GVNEK+Y P + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR A NIIPSSTGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLT RL + A+Y IK A+K ++G + GIL YTE+ VVSTDF GDS SSIFDAKAG
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
IAL+ NFVKLVSWYDNE+GYS RV+DL+ +M
Sbjct: 299 IALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 329
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/333 (62%), Positives = 257/333 (77%), Gaps = 4/333 (1%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+++ +GINGFGRIGRLV R +++ V++VAVNDPFI +YM YMFKYDS HG++K +
Sbjct: 6 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSV 63
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
+ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+ V
Sbjct: 64 EFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 125 VISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
VISAPS DAPMFV+GVNE +Y P ++IVSNASCTTNCLAPLAKVIH++FGIVEGLMTTV
Sbjct: 123 VISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTV 182
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
HS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+P L GKLTGM+FRVPT
Sbjct: 183 HSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTP 242
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
DVSVVDLT RL + A Y IK A+K ++G + GIL YTE++VVSTDF+GD+ SSIFDAK
Sbjct: 243 DVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAK 302
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
AGIAL+ NFVKL+SWYDNE+GYS RV+DL+ +M
Sbjct: 303 AGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 335
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/333 (63%), Positives = 258/333 (77%), Gaps = 5/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVRLEK ATYE+IK A+K +EG++KG+LGYTE+DVVSTDF G+ +S+FDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/333 (63%), Positives = 258/333 (77%), Gaps = 5/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVRLEK ATYE+IK A+K +EG++KG+LGYTE+DVVSTDF G+ +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/333 (63%), Positives = 257/333 (77%), Gaps = 5/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVRLEK ATYE+IK A+K +EG++KG+LGYTE+DVVSTDF G+ +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
IAL+ NFVKLVSWYD E GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDTETGYSNKVLDLIAHISK 330
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/333 (63%), Positives = 257/333 (77%), Gaps = 5/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV+
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD PMFV G N +Y + DIVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVRLEK ATYE+IK A+K +EG++KG+LGYTE+DVVSTDF G+ +S+FDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVXTSVFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/334 (61%), Positives = 250/334 (74%), Gaps = 8/334 (2%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
DVSVVDLT +L K A+ EEI A+KE S G +KGI+GYT +DVVSTDF+G SSIFD
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKN 321
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 322 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 355
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/334 (61%), Positives = 250/334 (74%), Gaps = 8/334 (2%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 20 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 80 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
DVSVVDLT +L K A+ EEI A+KE S G +KGI+GYT +DVVSTDF+G SSIFD
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKN 316
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 317 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/335 (61%), Positives = 249/335 (74%), Gaps = 5/335 (1%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+ E+
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 71
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D LL GEK V+VF ++P +IPW K + V ESTGVF V++S
Sbjct: 72 D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
AP KD P++V+G+N +Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG++FRVP
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL RL+K A YEE+ IK+ +EG LKGILGYTE++VVS DFV D+RSSIFD KA
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKA 310
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
G+AL+ NF KLVSWYDNEWGYS+RV+DL VH+ +
Sbjct: 311 GLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/332 (62%), Positives = 248/332 (74%), Gaps = 5/332 (1%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
K+GINGFGRIGRLV R A R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+ E+
Sbjct: 5 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 63
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D LL GEK V+VF ++P +IPW K + V ESTGVF V++S
Sbjct: 64 D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 122
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
AP KD P++V+G+N +Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 123 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 182
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG++FRVP
Sbjct: 183 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 242
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL RL+K A YEE+ IK+ +EG LKGILGYTE++VVS DFV D+RSSIFD KA
Sbjct: 243 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKA 302
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
G+AL+ NF KLVSWYDNEWGYS+RV+DL VH+
Sbjct: 303 GLALNDNFFKLVSWYDNEWGYSNRVLDLAVHI 334
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 248/334 (74%), Gaps = 8/334 (2%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D L K V VF ++P EIPW +GA+ V ESTGVFT V+IS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP KD PM+V+GVN EY P + +++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
DVSVVDLT +L K A+ EEI A+KE S G +KGI+GYT +DVVSTDF+G SSI D
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKN 321
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 322 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 355
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/339 (59%), Positives = 250/339 (73%), Gaps = 6/339 (1%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G K+GINGFGRIGRLV R A++R DVE++A+NDPF+S DYM Y+ +YDSVHG +
Sbjct: 20 GSMVCKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYP-G 78
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E+ KD K L+ G K V VF + P IPW + G Y+ ESTG+F
Sbjct: 79 EVSHKDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAK 137
Query: 123 XVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V++SAP KD PMFV+GVN +YK IVSNASCTTNCLAPLAK++HDKFGIVEGLMT
Sbjct: 138 KVIMSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMT 197
Query: 182 TVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
TVH++TA Q TVDGPS KDWR GR+A NIIP+STGAAKAVGK++P+LNGKLTGM+FR
Sbjct: 198 TVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFR 257
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKE-ESEGKLKGILGYTEEDVVSTDFVGDSRSS 298
VP DVSVVDLT +L K A YE+I A+KE + G +KGI+ YT+E+VVS+DFV SS
Sbjct: 258 VPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPMKGIISYTDEEVVSSDFVHCKFSS 317
Query: 299 IFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+FD AGI L+ FVKLVSWYDNEWGYS+R+++L +M+
Sbjct: 318 VFDINAGIMLNDTFVKLVSWYDNEWGYSNRLVELAHYMS 356
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/333 (62%), Positives = 251/333 (75%), Gaps = 5/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR+V R A +R D+E+VA+ND + DY Y KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD ++ G+K + V R+P + W + G + V E+TG+F VV
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
+ PSKD P FV G N +Y + DIVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG +FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
SVVDLTVRLEK ATYE+IK A+K +EG+ KG+LGYTE+DVVSTDF G+ +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 238/349 (68%), Gaps = 18/349 (5%)
Query: 7 IKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + L +++++VAV D Y Y KYDSVHG++KH+
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 63 ELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
VVISAP S A FV+GVN Y P E +VSNASCTTNCLAPL V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
FGI GLMTTVHS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
LTGM+FRVPT DVSVVDLT ++ + +EI A+K S+ +K ILGYT+E++VS DF+
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
DSRSSI+D+KA + + + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 303 SDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 239/350 (68%), Gaps = 20/350 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
IK+GINGFGRIGR+V + AL D ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62 NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
VVISAP S A V+GVN EY P E +VSNASCTTNCLAP+ V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
KLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+ +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ D+RSSI+D+KA + + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 302 INDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 350 bits (898), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/350 (52%), Positives = 238/350 (68%), Gaps = 20/350 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
IK+GINGFGRIGR+V + AL D ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62 NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
K D+ ++ G + + V RNP ++PW K G EYV+ESTG+FT
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
VVISAP S A V+GVN EY P E +VSNAS TTNCLAP+ V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
FG+ GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
KLTGMSFRVPT DVSVVDLT ++ + +EI A+K S+ +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ D+RSSI+D+KA + + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 302 INDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 344 bits (882), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/353 (51%), Positives = 239/353 (67%), Gaps = 18/353 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + + ++++VAV D + +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63 ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
VK ++ + G + V RNP ++PW K G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
VVISAP S A V+GVN+ EY P +VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
LTGMSFRVPT DVSVVDLT R ++ + +EI AIK+ ++ +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
D+RSS++D+KA + + K F K+VSWYDNEW YS RV+DL+ +MA A
Sbjct: 303 NDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDA 355
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 344 bits (882), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 181/353 (51%), Positives = 239/353 (67%), Gaps = 18/353 (5%)
Query: 7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
IK+GINGFGRIGR+V + + ++++VAV D + +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63 ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
VK ++ + G + V RNP ++PW K G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
VVISAP S A V+GVN+ EY P +VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
FGI GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
LTGMSFRVPT DVSVVDLT R ++ + +EI AIK+ ++ +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
D+RSS++D+KA + + K F K+VSWYDNEW YS RV+DL+ +MA A
Sbjct: 303 NDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDA 355
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 319 bits (818), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/333 (50%), Positives = 224/333 (67%), Gaps = 6/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE +VS D+ G + SS DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 317 bits (812), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/333 (50%), Positives = 224/333 (67%), Gaps = 6/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE +VS D+ G + SS DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 316 bits (810), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVN + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE +VS D+ G + SS DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE +VS D+ G + SS DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R AL+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
++ G K + V R+PE + W + G + VVESTG FT V+I
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
SAP+K+ + V+GVN+ +Y P+ ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
VSVVDL LEKE T EE+ A+K +EG+LKGIL Y+EE +VS D+ G + SS DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
+ + VK+VSWYDNE GYS RV+DL ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/335 (47%), Positives = 221/335 (65%), Gaps = 9/335 (2%)
Query: 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
++ INGFGRIGRLV R+ +R D+E+VA+ND T + ++ KYDSVH ++ K
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 66 VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
V+ E +L+ K + VF +P ++PW G ++V+ESTGVF V
Sbjct: 58 VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
+I+AP+K + V+G NE + KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
HS T Q+ +D P KD R RAA+ NIIP++TGAAKAV V+P + GKL GM+ RVPT
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
D S+ DLTV +EKE T EE+ +KE +EG+LKGI+GY +E +VS+D +G + S IFDA
Sbjct: 237 DGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDAT 296
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+ VK+ SWYDNE+GYS+RV+D + + K
Sbjct: 297 ITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 217/335 (64%), Gaps = 7/335 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
+++ INGFGRIGR + R ++ R D+++VA+ND + ++ +YDSVHG++ E+
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAIND-LGPVETNAHLLRYDSVHGRFP-KEV 60
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
+V + T+ G P+ V RNP E+PW + + +E TG+FT V
Sbjct: 61 EVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 125 VISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
++SAP+ A + VV GVN + + ++SNASCTTNCLAP+A+V++D GI +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
HS T Q T+D KD RAA+ ++IP+STGAAKAVG VLP L GKL G++ RVPT
Sbjct: 180 HSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
+VSVVDLT ++E T EE+ NAI+E + G+LKGILGYT+E +VS DF DS SS+F
Sbjct: 239 NVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTD 298
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+ V+++SWYDNEWG+SSR+ D V + K
Sbjct: 299 QTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGK 333
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 288 bits (737), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 13/344 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGR V ++A +R +++VA+ND + ++ KYDS G + +
Sbjct: 18 GPGSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NK 74
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX-----XXX 117
+++ +D ++ G + + + R+P+ +PWAK G + V+ESTGVF+
Sbjct: 75 KVESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVN 133
Query: 118 XXXXXXVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176
V+++ P+KD V+GVN+ + +L VSNASCTTNCLAPLAKV+H+ FGI
Sbjct: 134 HAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIE 193
Query: 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM 236
+GLMTTVH+ T Q+ +D P D R RAA+ +IIP+STGAAKAVG VLP L GKL G
Sbjct: 194 QGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGT 252
Query: 237 SFRVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGD 294
S RVP S+VDLTV+L +K+ T EEI + +++ SE +LKGILGYTE+ +VS+D G+
Sbjct: 253 SMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGN 312
Query: 295 SRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
S SSI D + L F K++SWYDNE+GYS+RV+DL + K
Sbjct: 313 SHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 286 bits (733), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 226/342 (66%), Gaps = 15/342 (4%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
IK+GINGFGRIGR R + R+++E+VA+ND ++ ++ KYDSVHG +K ++
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEA 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
KD+ ++ G K + VF ++P +IPW G + V+E+TGVF V+I
Sbjct: 61 KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K+ + VV GVNE++Y P E +I+SNASCTTNCLAP KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
+ T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V+P L GKL G + RVP D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 245 VSVVDLTVRLEK-EATYEEIKNAIKEESE-----GK--LKGILGYTEEDVVSTDFVGDSR 296
S++DLTV + K ++ EE+ +E ++ GK LK IL Y E+ +VSTD VG+
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298
Query: 297 SSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
S+IFDA + N V + +WYDNEWGYS R+ DL++++A+
Sbjct: 299 SAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAE 339
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 206/340 (60%), Gaps = 7/340 (2%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
G +++ INGFGRIGR + R ++ R D+E+VA+ND S + ++ +YDSVHG +
Sbjct: 20 GSMSVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFP 78
Query: 61 HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXX 120
V D + G + VF R+P ++PW + +E TG+FT
Sbjct: 79 GTVQVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAG 136
Query: 121 XXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V++SAPS+ A + VV GVN + E ++SNASCTTNCLAP+A+V+H+ GI +G
Sbjct: 137 AKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGF 196
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
MTT+HS T Q +D +D RAA+ ++IP+STGAAKAVG VLP L G L G+S R
Sbjct: 197 MTTIHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIR 255
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
VPT +VSVVDLT ++ T EEI AI+ ++G LKGIL YT+E +VS DF + S+I
Sbjct: 256 VPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAI 315
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
F + +++ WYDNEWG+S+R+ D V AKT
Sbjct: 316 FHNDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTAVAFAKT 355
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 267 bits (683), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 213/333 (63%), Gaps = 9/333 (2%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V VND T++ KYDS+ G +K +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K+ D +T KP+ V R+P ++PWA+ G + V+E TGVF
Sbjct: 59 VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+I+AP+K D P +VVGVNEK+Y ++ +I+SNASCTTNCLAP KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
TT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G++ RV
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 237
Query: 241 PTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
PT +VSVVDL V +EK T E++ NA ++ + G LKG+L + +VS DF SS
Sbjct: 238 PTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSST 297
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
D+ + + + VK+V+WYDNEWGYS RV+DL
Sbjct: 298 IDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDL 330
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/329 (46%), Positives = 209/329 (63%), Gaps = 8/329 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ L VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+ + G K + ++P+EIPWA+ G V+ESTGVFT V+I
Sbjct: 58 DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K + V+GVN + Y P I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GM+ RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
S+ D+T L++E T EE+ A+K +EG LKGIL YTE+++V D V D SSI DAK
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
AL N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKALG-NMVKVFAWYDNEWGYANRVADLV 323
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 208/323 (64%), Gaps = 6/323 (1%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
++ INGFGRIGR+V R A++ E+VA+N + S + + ++ KYD+VHG++ +
Sbjct: 6 RVAINGFGRIGRMVFRQAIKESAFEIVAINASYPS-ETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
D LL K + + R+P+E+PW G E V+E+TG F V+++
Sbjct: 65 DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 128 APSKDAPM-FVVGVNEKEYK-PELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
AP K+ + VVGVNE + + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
T QK +D P KD R RA +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT +V
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
S+VDL V ++++ T E I +A K + G LKGI+ ++EE +VS DF ++ S+I D +
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLST 301
Query: 306 IALSKNFVKLVSWYDNEWGYSSR 328
+ + VK+++WYDNEWGYS R
Sbjct: 302 MVMGDRKVKVLAWYDNEWGYSRR 324
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 153/329 (46%), Positives = 207/329 (62%), Gaps = 8/329 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ +R VE+ +ND + ++ KYDS +G++
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFP--GAVG 56
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
DE+ L K + ++P EIPW + G VVESTGVFT V+I
Sbjct: 57 YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K+ + VV GVN ++Y P + I+SNASCTTN LAP+ KV+ FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GM+ RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
S+ D+T L++E T EE+ A+K +EG LKGIL YTE+++V D V D SSI D K
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
A+ N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKAIG-NLVKVFAWYDNEWGYANRVADLV 323
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 206/339 (60%), Gaps = 10/339 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR R + + D+E+VA+ND ++ +YD+ HG++ E
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFP-GE 68
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+ V + ++ G++ + V RNP E+PW + G + V+E TG FT
Sbjct: 69 VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 124 VVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP KD +V GVN K E ++SNASCTTNCLAPL K ++DK G+ GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
T+H+ T Q D +D R R+A+ + IP+ TGAA AVG VLP LNGKL G + RVP
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVP 246
Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD 301
T++VS+VDL+ +++ T E+ +KE SEG LKGILGY E +VS DF + SS FD
Sbjct: 247 TINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDFNHNPASSTFD 306
Query: 302 AKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
A +S VK+ SWYDNEWG+S+R++D + +A +
Sbjct: 307 ATL-TKVSGRLVKVSSWYDNEWGFSNRMLDTAIALANAK 344
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 260 bits (664), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 208/329 (63%), Gaps = 8/329 (2%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+GINGFGRIGR V R+ L VE+ +ND + ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D+ + G K + ++P+EIPWA+ G V+ESTGVFT V+I
Sbjct: 58 DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
+AP+K + V+GVN + Y P I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GM+ RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
S+ D+T L++E T EE+ A+K +EG LKGIL YTE+++V D V D SSI DAK
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
AL N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKALG-NMVKVFAWYDNEWGYANRVADLV 323
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
+VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +VS DF SS D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 259 bits (662), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
+VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +VS DF SS D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
+VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +VS DF SS D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K + + K + V RNP +PW G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
HS T Q+ +D + +D R RAA NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
+VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +VS DF SS D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 257 bits (657), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 6/329 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
K+K+ INGFGRIGR R +D +++V +ND +++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 65 KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
K + + G K + V RNP +PW G + V+E TGVF V
Sbjct: 59 KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
+I+AP K D P +VVGVNE+ Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
+VSVVDL V++ K+ EE+ A +E ++ +LKGIL +E +VS DF SS D+
Sbjct: 237 NVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDSS 296
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 297 LTMVMGDDMVKVIAWYDNEWGYSQRVVDL 325
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 214/333 (64%), Gaps = 13/333 (3%)
Query: 7 IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
I++ INGFGRIGR R Q D+E+VA+N+ ++D T ++ +YDSV G++ N
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 58 ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
VPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++ +VS+DF G SSI
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSI 296
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 297 VDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 214/333 (64%), Gaps = 13/333 (3%)
Query: 7 IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
I++ INGFGRIGR R Q D+E+VA+N+ ++D T ++ +YDSV G++ N
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
DE ++ K + + RNP +PW + + V+ESTGVF
Sbjct: 58 ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
V+I+AP K + +V+GVN+ EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
VPT +VSVVDL V++EK E++ +++ S+ +KGI+ Y++ +VS+DF G SSI
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSI 296
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
D+ + + + VK+++WYDNEWGYS RV+DL
Sbjct: 297 VDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 198/336 (58%), Gaps = 12/336 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
I++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFP-GT 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+ V ++ G+K + V RNP ++PW + V+E TG FT
Sbjct: 60 VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ISAP DA + V GVN K ++SNAS TTNCLAPL K ++DK G+ +GLM
Sbjct: 119 VIISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLM 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
TTVH+ T Q D +D R R+A+ ++IP+ TGAA AVG VLP L+GKL G + RV
Sbjct: 178 TTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
PT++VS+VDL+ ++ T EE+ +K SEG+LKGIL Y E +VS D+ D SS
Sbjct: 237 PTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTV 296
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
DA +S VK+ SWYDNEWG+S+R++D V +
Sbjct: 297 DASL-TKVSGRLVKVSSWYDNEWGFSNRMLDTTVAL 331
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 204/342 (59%), Gaps = 13/342 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++
Sbjct: 7 GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 64
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E++V D + G K V F + ++PW + V+E TG +T
Sbjct: 65 EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 123
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 124 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 183
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
T+H+ T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 184 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 243
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
P S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+
Sbjct: 244 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSL 299
Query: 300 FDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
FDA +S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 300 FDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 341
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 204/342 (59%), Gaps = 13/342 (3%)
Query: 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
G +K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++
Sbjct: 1 GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 58
Query: 63 ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
E++V D + G K V F + ++PW + V+E TG +T
Sbjct: 59 EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 117
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
V+ISAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 118 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 177
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
T+H+ T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 178 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 237
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
P S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+
Sbjct: 238 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSL 293
Query: 300 FDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
FDA +S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 294 FDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 147/330 (44%), Positives = 202/330 (61%), Gaps = 6/330 (1%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
K+K+ INGFGRIGR R R D ++++A+ND +++ KYDS G + +
Sbjct: 2 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
+K E + K + V RNP +PW + G + V+E TGVF
Sbjct: 60 VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
V+I+AP K D P +VVGVN Y + I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G++ RVPT
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
+VSVVDL V++ K+ EE+ A ++ +E +LKGIL +E +VS DF S+ D+
Sbjct: 239 PNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDS 298
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
+ + + VK+++WYDNEWGYS RV+DL
Sbjct: 299 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 328
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 6 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 63
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 64 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 242
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 243 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 298
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 299 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 336
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
+K+ INGFGRIGRL R + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
D + G K V F + ++PW + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
SAP+ D V N +E +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
S+ +LTV LEK+ T E++ A+K S GYTE+++VS+D VG + S+FDA
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
+S + VK+ +WYDNE Y+++++ + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 188/337 (55%), Gaps = 11/337 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
TT+HS Q+ +D D R RAAS +IIP T A + + P N + ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
PT++V+ +DL+V ++K E+ +++ ++G GI+ YTE +VS DF D S+I
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 297
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
D + +K + W DNEWG+++R++D + MA
Sbjct: 298 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 188/337 (55%), Gaps = 11/337 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 58 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
TT+HS Q+ +D D R RAAS +IIP T A + + P N + ++ RV
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
PT++V+ +DL+V ++K E+ +++ ++G GI+ YTE +VS DF D S+I
Sbjct: 237 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 296
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
D + +K + W DNEWG+++R++D + MA
Sbjct: 297 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 333
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 11/337 (3%)
Query: 7 IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
+++ INGFGRIGR V R + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64 LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
+V+ E+ LF G+ + V R+ + +PW + G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
V+ S P S D VV GVN+ + + E IVSNAS TTN + P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
TT+HS Q+ +D D R RAAS +IIP T A + + P N + ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
PT++V+ +DL+V ++K E+ +++ ++G GI+ YTE +VS DF D S+I
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 297
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
D + +K + W DNEWG+++R++D + MA
Sbjct: 298 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334
>pdb|2CZC|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 334
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36
K+K+G+NG+G IG+ VA ++DD+EL+ +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGI 32
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 132 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 102 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 160
Query: 189 T 189
+
Sbjct: 161 S 161
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 132 DAPMFVVGVN---EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + +P+ I++N +CTT P+ KV+HD+ +V ++++ +++
Sbjct: 120 DVPLVVSEVNFERDAHRRPK-GIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSG 178
Query: 189 T 189
+
Sbjct: 179 S 179
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 134 PMFVVGVNEKEYKPELDIVSNASCTTNCLA----PLAKVIHDKFGIVE--------GLMT 181
P+ V VN ++ I++N +CTT LA PL + K IV G
Sbjct: 102 PLVVPEVNREKIFQHRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKA 161
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIP-----SSTGAAKAVGKVLPALNG----- 231
+T T + + G + K FN+IP G + KV+ +
Sbjct: 162 MEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDD 221
Query: 232 --KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKE 269
+++ + RVPT+ ++V + T E + +KE
Sbjct: 222 TIRISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKE 261
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 50/178 (28%)
Query: 131 KDAPMFVVGVNEKEYKPELDIVSNAS---------------CTTNC-----LAPLAKVIH 170
KD P+ V VN + +D+V N C +NC +APL ++
Sbjct: 131 KDVPLVVPIVNPEH----IDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLV- 185
Query: 171 DKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG--------AAKAV 222
+KFG ++ L TT T + + G G NI+P +G K +
Sbjct: 186 EKFGPIDALTTT------TLQAISGAGFSPGVSGMDILDNIVPYISGEEDKLEWETKKIL 239
Query: 223 GKV---------LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKE 269
G V +P K++ RVP +D +++R + E++K ++E
Sbjct: 240 GGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLRE 297
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 151 IVSNASCTTNCLA-PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASF 209
+V N +CT ++ P+ +I + T I T + V G G SF
Sbjct: 145 LVKNPNCTAAIMSMPIKPLIE--------IATKSKIIITTLQAVSG------AGYNGISF 190
Query: 210 -----NIIPSSTGAAKAVGKVLPALNGKL------------TGMSFRVPTVDVSVVDLTV 252
NIIP G + K L LNGKL T S RVPT + + +
Sbjct: 191 MAIEGNIIPYIKGEEDKIAKELTKLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINI 250
Query: 253 RLEKEATYEEIKNAIKE-ESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD--AKAGIALS 309
+ EEIK +K +S + K + ++ ++ D D I D A++G+A++
Sbjct: 251 VTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPIIVRDE-EDRPQPIIDVNAESGMAVT 309
Query: 310 -------KNFVKLVSWYDN 321
N ++LV DN
Sbjct: 310 VGRIRHENNVLRLVVLGDN 328
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 151 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASF 209
I++N +C+T C K I DKFG+ + T +++ A V ++ D
Sbjct: 151 IITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVSGAGYNGVPSXAILD--------- 201
Query: 210 NIIP--------SSTGAAKAVGKV----LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKE 257
N+IP T + K +G + + N K++ RV +D + V+ ++
Sbjct: 202 NLIPFIKNEEEKXQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEG 261
Query: 258 ATYEEIK 264
A EEIK
Sbjct: 262 AEPEEIK 268
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI 41
++I + G GRIG + A D+ELV + DPFI
Sbjct: 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI 39
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 9 IGINGFGRIGRLVARVALQRDDVELVAVN 37
+ ING+G +G+ VA Q+DD++++ V+
Sbjct: 4 VAINGYGTVGKRVADAIAQQDDMKVIGVS 32
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36
K+ ING+G IG+ VA +DD+E++ V
Sbjct: 4 KVLINGYGSIGKRVADAVSMQDDMEVIGV 32
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 134 PMFV------VGVNEKEYKPELDIVSNASCTTNCLAPLAKVI----HDKFGIVEGLMTTV 183
PMF+ +GVNE Y + I S SC + P + + H ++ L T
Sbjct: 95 PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTF 154
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG 217
H + Q D ++ + ++A+ PSS G
Sbjct: 155 HPL---QAIADFLTIHESFASQSATHGTHPSSLG 185
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 208 SFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 267
FN++ + +G + AV KVL L ++ + +++ +VD+ L + E+IK
Sbjct: 8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDI---SLEKQLVDVYTTLPYDFILEKIKKTG 64
Query: 268 KEESEGK 274
KE GK
Sbjct: 65 KEVRSGK 71
>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
Length = 340
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36
+ + +NG+G IG+ VA +++ D++LV V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGV 31
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 208 SFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI 267
FN++ + +G + AV KVL L ++ + +++ +VD+ L + E+IK
Sbjct: 8 QFNVVMTCSGCSGAVNKVLTKLEPDVSKIDI---SLEKQLVDVYTTLPYDFILEKIKKTG 64
Query: 268 KEESEGK 274
KE GK
Sbjct: 65 KEVRSGK 71
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 137 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 196
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 197 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 243
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 244 DVSVV-DLTVRLEKEATYE 261
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 137 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 196
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 197 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 243
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 244 DVSVV-DLTVRLEKEATYE 261
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 137 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 196
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 197 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 243
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 244 DVSVV-DLTVRLEKEATYE 261
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 137 VVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP 196
V GV+ E P L + N P KV+++ + MT V T+ +
Sbjct: 165 VWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETF--AV 222
Query: 197 SMKDWRGGRAASFNIIPSSTGAAKAVGKVLP-ALNGKLTG-MSF-----------RVPTV 243
+ G + A+ +I+P K GK L A NG ++G +S R+P
Sbjct: 223 MFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVK 282
Query: 244 DVSVV-DLTVRLEKEATYE 261
+ V D VRL K YE
Sbjct: 283 FMRVKGDFEVRLRKGQLYE 301
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 9 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 54
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 9 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 54
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVTRDFVERV 55
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 269 EESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV 316
+E+ G+L+G TEED+ +T + + R ++ DA + ++++FV+ V
Sbjct: 10 QEAIGRLRGRGRITEEDLKAT--LREIRRALMDADVNLEVARDFVERV 55
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In
Complex With Galnac
Length = 444
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
KK++I G G+ +RDDVE+VA DP
Sbjct: 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 132 DAPMFVVGVNEK---EYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 188
D P+ V VN + E++ +I++N +C+T + K I+D GI +TT S++
Sbjct: 104 DIPLVVPEVNPEAIAEFR-NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 189 TQKTVDGPSMKDWRGGRAASFNIIPSST 216
K + + G A N P+ T
Sbjct: 163 AGKA----GIDELAGQTAKLLNGYPAET 186
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF 50
I++ I G+G +GR V ++ ++ D++LV + + D T +F
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVF 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,663
Number of Sequences: 62578
Number of extensions: 379474
Number of successful extensions: 1377
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 109
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)