Query 019445
Match_columns 341
No_of_seqs 267 out of 1889
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 5E-107 1E-111 767.7 31.4 335 4-340 1-355 (361)
2 PRK15425 gapA glyceraldehyde-3 100.0 9E-102 2E-106 732.1 33.9 329 6-338 2-331 (331)
3 PTZ00023 glyceraldehyde-3-phos 100.0 1E-101 3E-106 732.4 33.9 332 6-339 2-336 (337)
4 PLN02237 glyceraldehyde-3-phos 100.0 9E-102 2E-106 747.8 31.4 331 5-339 74-411 (442)
5 PRK07403 glyceraldehyde-3-phos 100.0 5E-101 1E-105 727.9 32.8 332 6-341 1-337 (337)
6 PRK07729 glyceraldehyde-3-phos 100.0 6E-100 1E-104 721.1 32.8 331 6-340 2-334 (343)
7 PLN02358 glyceraldehyde-3-phos 100.0 4.2E-99 9E-104 718.0 35.5 336 1-338 1-337 (338)
8 PLN02272 glyceraldehyde-3-phos 100.0 5.7E-99 1E-103 727.6 34.3 333 6-340 85-418 (421)
9 PLN03096 glyceraldehyde-3-phos 100.0 3.7E-99 8E-104 725.8 32.4 333 5-340 59-394 (395)
10 PTZ00353 glycosomal glyceralde 100.0 6.3E-97 1E-101 700.2 31.7 332 6-340 2-337 (342)
11 PRK13535 erythrose 4-phosphate 100.0 9.7E-97 2E-101 700.6 31.8 329 6-338 1-334 (336)
12 PRK08955 glyceraldehyde-3-phos 100.0 9.6E-97 2E-101 700.8 30.5 329 6-339 2-333 (334)
13 COG0057 GapA Glyceraldehyde-3- 100.0 3.3E-96 7E-101 681.5 31.8 332 6-341 1-335 (335)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 1.2E-94 2.7E-99 684.6 29.7 321 8-331 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 3.9E-94 8.4E-99 695.6 29.9 331 6-340 127-472 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.2E-92 2.5E-97 672.5 29.5 320 8-331 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 3.5E-75 7.6E-80 523.7 14.0 285 17-339 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 7.1E-46 1.5E-50 351.8 20.3 234 9-272 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 1.1E-44 2.3E-49 311.3 13.1 157 162-319 1-157 (157)
20 PRK14874 aspartate-semialdehyd 100.0 9.4E-41 2E-45 320.6 21.4 239 7-281 2-276 (334)
21 PRK04207 glyceraldehyde-3-phos 100.0 2.4E-40 5.2E-45 318.1 20.4 261 6-297 1-274 (341)
22 TIGR01296 asd_B aspartate-semi 100.0 4.4E-39 9.6E-44 309.1 21.0 240 8-281 1-279 (339)
23 PF00044 Gp_dh_N: Glyceraldehy 100.0 7.8E-40 1.7E-44 278.6 12.2 149 7-157 1-151 (151)
24 COG0002 ArgC Acetylglutamate s 100.0 8.9E-40 1.9E-44 306.3 13.3 273 6-323 2-319 (349)
25 PRK08040 putative semialdehyde 100.0 3.9E-38 8.4E-43 300.7 22.5 240 5-280 3-274 (336)
26 PRK05671 aspartate-semialdehyd 100.0 3E-37 6.6E-42 295.2 21.4 297 1-336 1-331 (336)
27 PRK06728 aspartate-semialdehyd 100.0 6.5E-37 1.4E-41 292.4 19.1 239 1-271 1-277 (347)
28 PRK08664 aspartate-semialdehyd 100.0 9.2E-36 2E-40 287.7 21.7 246 4-280 1-287 (349)
29 PRK11863 N-acetyl-gamma-glutam 100.0 3E-36 6.4E-41 284.4 16.7 267 6-323 2-290 (313)
30 smart00846 Gp_dh_N Glyceraldeh 100.0 8.5E-36 1.9E-40 254.0 16.3 148 7-157 1-149 (149)
31 TIGR01851 argC_other N-acetyl- 100.0 3.2E-36 6.9E-41 282.4 15.0 225 7-281 2-248 (310)
32 TIGR00978 asd_EA aspartate-sem 100.0 5.4E-35 1.2E-39 281.5 22.6 240 7-273 1-266 (341)
33 PRK06901 aspartate-semialdehyd 100.0 1.4E-34 3.1E-39 270.9 18.1 235 5-272 2-255 (322)
34 PRK06598 aspartate-semialdehyd 100.0 9.8E-35 2.1E-39 278.9 16.9 234 7-270 2-299 (369)
35 TIGR01850 argC N-acetyl-gamma- 100.0 2.3E-34 5.1E-39 277.4 18.3 295 7-337 1-331 (346)
36 PLN02383 aspartate semialdehyd 100.0 1.7E-33 3.8E-38 270.3 22.3 242 6-281 7-284 (344)
37 PLN02968 Probable N-acetyl-gam 100.0 2.4E-33 5.2E-38 272.5 18.4 240 5-280 37-312 (381)
38 PRK00436 argC N-acetyl-gamma-g 100.0 1.4E-32 3E-37 264.9 23.3 295 6-336 2-327 (343)
39 COG0136 Asd Aspartate-semialde 100.0 9.2E-33 2E-37 259.2 20.2 285 6-326 1-323 (334)
40 TIGR01745 asd_gamma aspartate- 100.0 1.3E-32 2.8E-37 263.5 16.2 233 7-270 1-297 (366)
41 KOG4354 N-acetyl-gamma-glutamy 99.9 1.5E-24 3.2E-29 192.8 14.0 273 5-330 18-318 (340)
42 KOG4777 Aspartate-semialdehyde 99.8 7.5E-21 1.6E-25 170.4 11.3 238 7-272 4-278 (361)
43 PRK08300 acetaldehyde dehydrog 99.6 1.8E-15 3.9E-20 142.1 12.9 223 4-272 2-230 (302)
44 PF01118 Semialdhyde_dh: Semia 99.6 1.7E-16 3.8E-21 130.7 4.5 114 8-146 1-119 (121)
45 TIGR03215 ac_ald_DH_ac acetald 99.4 4.2E-12 9.1E-17 119.0 10.7 153 6-188 1-155 (285)
46 PF02774 Semialdhyde_dhC: Semi 99.1 5.1E-10 1.1E-14 98.9 8.3 113 166-280 1-141 (184)
47 TIGR01921 DAP-DH diaminopimela 98.8 6.5E-08 1.4E-12 92.2 12.8 88 5-125 2-89 (324)
48 smart00859 Semialdhyde_dh Semi 98.8 2.9E-08 6.3E-13 81.5 8.3 113 8-146 1-121 (122)
49 PRK13302 putative L-aspartate 98.6 1.6E-07 3.5E-12 88.0 8.7 97 1-127 1-98 (271)
50 PRK13303 L-aspartate dehydroge 98.5 5E-07 1.1E-11 84.4 8.0 91 7-127 2-92 (265)
51 PF01113 DapB_N: Dihydrodipico 98.4 3.2E-07 7E-12 75.8 4.2 94 7-127 1-98 (124)
52 TIGR00036 dapB dihydrodipicoli 98.3 2.9E-06 6.3E-11 79.3 8.2 97 7-127 2-99 (266)
53 COG0289 DapB Dihydrodipicolina 98.3 5.7E-06 1.2E-10 76.0 9.7 100 6-129 2-102 (266)
54 PRK13301 putative L-aspartate 98.1 7.1E-06 1.5E-10 75.9 7.8 90 6-128 2-94 (267)
55 PRK00048 dihydrodipicolinate r 98.1 6.1E-06 1.3E-10 76.7 7.4 89 6-126 1-90 (257)
56 PF01408 GFO_IDH_MocA: Oxidore 98.0 9.6E-06 2.1E-10 65.8 6.0 93 7-129 1-94 (120)
57 PRK13304 L-aspartate dehydroge 98.0 1.8E-05 3.9E-10 73.9 8.0 90 7-127 2-92 (265)
58 PRK11579 putative oxidoreducta 98.0 3.2E-05 6.9E-10 74.8 8.9 92 6-129 4-96 (346)
59 COG1712 Predicted dinucleotide 97.9 2.4E-05 5.3E-10 70.2 7.0 92 7-129 1-93 (255)
60 PRK06270 homoserine dehydrogen 97.9 3.6E-05 7.8E-10 74.5 7.4 34 6-39 2-44 (341)
61 COG4569 MhpF Acetaldehyde dehy 97.8 0.00015 3.3E-09 64.0 9.8 134 6-169 4-142 (310)
62 PLN02775 Probable dihydrodipic 97.7 0.0001 2.2E-09 69.1 8.1 97 6-127 11-111 (286)
63 COG0673 MviM Predicted dehydro 97.7 0.00013 2.9E-09 69.8 8.0 96 4-129 1-99 (342)
64 PRK06349 homoserine dehydrogen 97.6 0.00015 3.2E-09 72.3 7.0 88 5-122 2-99 (426)
65 PRK10206 putative oxidoreducta 97.5 0.00028 6E-09 68.4 7.5 94 6-129 1-96 (344)
66 KOG2741 Dimeric dihydrodiol de 97.4 0.00053 1.1E-08 65.4 8.4 100 1-128 1-103 (351)
67 PRK08374 homoserine dehydrogen 97.4 0.00024 5.1E-09 68.7 5.6 105 6-125 2-120 (336)
68 TIGR02130 dapB_plant dihydrodi 97.3 0.00045 9.7E-09 64.5 6.2 93 7-127 1-100 (275)
69 PF03447 NAD_binding_3: Homose 97.3 0.00017 3.7E-09 58.6 2.5 84 13-125 1-88 (117)
70 PRK06392 homoserine dehydrogen 97.2 0.0011 2.4E-08 63.7 7.4 33 7-39 1-40 (326)
71 PLN02819 lysine-ketoglutarate 97.1 0.0009 2E-08 73.0 6.3 99 6-127 569-679 (1042)
72 PRK06813 homoserine dehydrogen 97.0 0.001 2.2E-08 64.4 5.8 34 6-39 2-44 (346)
73 COG0460 ThrA Homoserine dehydr 96.8 0.0046 1E-07 59.3 7.8 99 4-129 1-113 (333)
74 COG4091 Predicted homoserine d 96.7 0.0051 1.1E-07 58.8 7.2 111 5-125 16-131 (438)
75 TIGR01761 thiaz-red thiazoliny 96.7 0.0059 1.3E-07 59.2 7.7 92 6-129 3-98 (343)
76 PF10727 Rossmann-like: Rossma 96.6 0.003 6.4E-08 52.4 4.6 81 6-119 10-91 (127)
77 PRK07502 cyclohexadienyl dehyd 96.5 0.0083 1.8E-07 57.0 7.5 38 1-39 1-39 (307)
78 COG1748 LYS9 Saccharopine dehy 96.5 0.0051 1.1E-07 60.3 5.8 102 6-130 1-102 (389)
79 COG2344 AT-rich DNA-binding pr 96.5 0.0042 9.1E-08 54.5 4.6 96 5-129 83-179 (211)
80 PRK05472 redox-sensing transcr 96.4 0.0082 1.8E-07 54.1 6.5 95 6-129 84-179 (213)
81 PF02629 CoA_binding: CoA bind 96.2 0.0068 1.5E-07 47.6 4.4 91 6-127 3-93 (96)
82 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.027 5.8E-07 51.4 8.6 34 5-39 30-63 (227)
83 PRK07634 pyrroline-5-carboxyla 96.0 0.014 3.1E-07 53.3 6.3 33 5-37 3-38 (245)
84 PF03807 F420_oxidored: NADP o 96.0 0.011 2.3E-07 45.9 4.6 90 8-127 1-94 (96)
85 PRK05447 1-deoxy-D-xylulose 5- 96.0 0.027 5.8E-07 55.2 8.2 111 7-126 2-120 (385)
86 PF03435 Saccharop_dh: Sacchar 95.9 0.0097 2.1E-07 58.3 4.9 98 9-127 1-98 (386)
87 PLN02700 homoserine dehydrogen 95.9 0.013 2.7E-07 57.4 5.3 36 4-39 1-44 (377)
88 PF13460 NAD_binding_10: NADH( 95.8 0.011 2.3E-07 51.2 3.9 30 9-39 1-31 (183)
89 PF05368 NmrA: NmrA-like famil 95.7 0.0036 7.8E-08 56.6 0.9 95 9-128 1-102 (233)
90 CHL00194 ycf39 Ycf39; Provisio 95.7 0.038 8.3E-07 52.5 7.9 30 8-38 2-32 (317)
91 KOG4039 Serine/threonine kinas 95.6 0.062 1.3E-06 47.0 8.0 33 5-37 17-50 (238)
92 PRK11880 pyrroline-5-carboxyla 95.5 0.025 5.4E-07 52.4 5.7 34 6-39 2-36 (267)
93 cd05211 NAD_bind_Glu_Leu_Phe_V 95.5 0.072 1.6E-06 48.3 8.5 33 6-39 23-55 (217)
94 COG2910 Putative NADH-flavin r 95.3 0.087 1.9E-06 46.4 8.0 32 7-39 1-33 (211)
95 PF13380 CoA_binding_2: CoA bi 95.3 0.065 1.4E-06 43.6 6.8 83 8-129 2-88 (116)
96 PRK09414 glutamate dehydrogena 95.3 0.11 2.3E-06 52.1 9.5 103 7-126 233-342 (445)
97 KOG1502 Flavonol reductase/cin 95.2 0.12 2.7E-06 49.4 9.3 52 1-53 1-53 (327)
98 PRK14618 NAD(P)H-dependent gly 95.0 0.059 1.3E-06 51.6 6.6 34 1-37 1-34 (328)
99 cd05313 NAD_bind_2_Glu_DH NAD( 94.9 0.19 4E-06 46.7 9.4 103 7-125 39-151 (254)
100 PLN02256 arogenate dehydrogena 94.8 0.066 1.4E-06 51.1 6.4 33 5-38 35-67 (304)
101 PRK07819 3-hydroxybutyryl-CoA 94.8 0.071 1.5E-06 50.3 6.5 34 1-36 1-34 (286)
102 PRK08818 prephenate dehydrogen 94.7 0.061 1.3E-06 52.7 5.8 77 6-126 4-87 (370)
103 PRK07417 arogenate dehydrogena 94.6 0.12 2.6E-06 48.4 7.5 29 8-37 2-30 (279)
104 PLN02696 1-deoxy-D-xylulose-5- 94.3 0.092 2E-06 52.4 6.2 113 6-127 57-179 (454)
105 COG2085 Predicted dinucleotide 94.3 0.11 2.5E-06 46.5 6.2 33 6-39 1-33 (211)
106 COG0287 TyrA Prephenate dehydr 94.1 0.13 2.9E-06 48.4 6.5 92 6-127 3-98 (279)
107 PRK00094 gpsA NAD(P)H-dependen 94.1 0.16 3.5E-06 48.2 7.2 29 7-36 2-30 (325)
108 cd05213 NAD_bind_Glutamyl_tRNA 94.1 0.096 2.1E-06 50.0 5.7 32 7-39 179-210 (311)
109 PRK08306 dipicolinate synthase 94.0 0.12 2.6E-06 49.1 6.1 30 7-37 153-182 (296)
110 PRK06249 2-dehydropantoate 2-r 93.9 0.28 6E-06 46.7 8.4 31 5-36 4-34 (313)
111 PRK08229 2-dehydropantoate 2-r 93.9 0.27 5.9E-06 47.1 8.5 31 6-37 2-32 (341)
112 PF00056 Ldh_1_N: lactate/mala 93.8 0.22 4.7E-06 41.9 6.8 30 7-36 1-32 (141)
113 cd01065 NAD_bind_Shikimate_DH 93.6 0.17 3.6E-06 42.5 5.8 33 6-39 19-51 (155)
114 cd05294 LDH-like_MDH_nadp A la 93.5 0.29 6.3E-06 46.7 7.8 31 7-37 1-33 (309)
115 PF01210 NAD_Gly3P_dh_N: NAD-d 93.5 0.24 5.3E-06 42.2 6.6 88 8-116 1-89 (157)
116 PRK06476 pyrroline-5-carboxyla 93.3 0.14 3E-06 47.4 5.1 32 8-39 2-34 (258)
117 PRK06223 malate dehydrogenase; 93.3 0.32 6.9E-06 46.1 7.7 30 7-36 3-32 (307)
118 PRK09436 thrA bifunctional asp 93.2 0.18 4E-06 54.5 6.6 35 5-39 464-506 (819)
119 TIGR03736 PRTRC_ThiF PRTRC sys 93.1 0.36 7.7E-06 44.6 7.5 106 6-119 11-129 (244)
120 PRK08507 prephenate dehydrogen 93.0 0.31 6.7E-06 45.5 7.1 29 8-36 2-31 (275)
121 TIGR02853 spore_dpaA dipicolin 93.0 0.15 3.3E-06 48.1 5.0 30 7-37 152-181 (287)
122 PRK09466 metL bifunctional asp 92.9 0.099 2.1E-06 56.3 4.0 35 5-39 457-500 (810)
123 COG0373 HemA Glutamyl-tRNA red 92.9 0.4 8.7E-06 47.5 7.9 92 7-129 179-276 (414)
124 PTZ00431 pyrroline carboxylate 92.9 0.19 4E-06 46.7 5.4 23 7-29 4-26 (260)
125 PRK11199 tyrA bifunctional cho 92.8 0.21 4.6E-06 49.0 5.9 27 6-33 98-125 (374)
126 TIGR02717 AcCoA-syn-alpha acet 92.7 0.38 8.3E-06 48.3 7.7 87 5-129 6-98 (447)
127 PF02826 2-Hacid_dh_C: D-isome 92.7 0.17 3.6E-06 44.2 4.5 32 7-39 37-68 (178)
128 TIGR03649 ergot_EASG ergot alk 92.7 0.33 7.2E-06 45.1 6.8 30 8-38 1-31 (285)
129 PRK06928 pyrroline-5-carboxyla 92.6 0.32 7E-06 45.6 6.6 32 7-38 2-36 (277)
130 PLN00016 RNA-binding protein; 92.5 0.38 8.2E-06 46.9 7.2 32 6-38 52-88 (378)
131 COG0569 TrkA K+ transport syst 92.4 0.36 7.9E-06 43.9 6.5 100 7-130 1-102 (225)
132 PRK07679 pyrroline-5-carboxyla 92.3 0.29 6.4E-06 45.8 5.9 23 7-29 4-26 (279)
133 PTZ00082 L-lactate dehydrogena 92.3 0.45 9.7E-06 45.7 7.2 38 1-39 1-38 (321)
134 COG3804 Uncharacterized conser 92.2 0.18 4E-06 47.1 4.2 34 6-39 2-35 (350)
135 PTZ00079 NADP-specific glutama 92.2 1.1 2.3E-05 45.1 9.9 105 7-127 238-352 (454)
136 PRK00066 ldh L-lactate dehydro 92.2 0.92 2E-05 43.5 9.2 31 6-36 6-37 (315)
137 PLN02477 glutamate dehydrogena 92.1 1.5 3.2E-05 43.6 10.7 32 7-39 207-238 (410)
138 PRK07680 late competence prote 92.0 0.24 5.1E-06 46.2 4.9 32 8-39 2-35 (273)
139 PRK08618 ornithine cyclodeamin 92.0 0.3 6.5E-06 46.9 5.7 94 7-128 128-222 (325)
140 PLN02712 arogenate dehydrogena 92.0 0.39 8.4E-06 50.8 6.9 32 5-37 368-399 (667)
141 PRK14619 NAD(P)H-dependent gly 92.0 0.29 6.3E-06 46.5 5.5 30 6-36 4-33 (308)
142 COG0240 GpsA Glycerol-3-phosph 91.9 0.34 7.3E-06 46.5 5.8 100 7-127 2-105 (329)
143 cd00401 AdoHcyase S-adenosyl-L 91.8 0.33 7.1E-06 48.3 5.8 31 7-39 203-233 (413)
144 PRK12491 pyrroline-5-carboxyla 91.7 0.39 8.5E-06 45.0 6.0 23 7-29 3-25 (272)
145 COG1063 Tdh Threonine dehydrog 91.5 0.4 8.7E-06 46.5 6.0 101 8-129 171-271 (350)
146 cd05290 LDH_3 A subgroup of L- 91.5 0.83 1.8E-05 43.6 8.0 29 8-36 1-30 (307)
147 PLN02688 pyrroline-5-carboxyla 90.9 0.6 1.3E-05 43.1 6.4 33 7-39 1-36 (266)
148 PRK06545 prephenate dehydrogen 90.9 0.71 1.5E-05 45.0 7.1 27 8-34 2-29 (359)
149 PF01488 Shikimate_DH: Shikima 90.8 0.4 8.6E-06 39.9 4.6 32 7-39 13-44 (135)
150 PRK08605 D-lactate dehydrogena 90.8 0.59 1.3E-05 45.1 6.4 30 7-36 147-176 (332)
151 PF02670 DXP_reductoisom: 1-de 90.8 0.47 1E-05 39.4 4.9 109 9-126 1-119 (129)
152 PTZ00117 malate dehydrogenase; 90.6 1.5 3.3E-05 41.9 9.0 32 7-39 6-37 (319)
153 PF03446 NAD_binding_2: NAD bi 90.6 0.39 8.4E-06 41.2 4.4 32 6-39 1-32 (163)
154 PRK06046 alanine dehydrogenase 90.4 0.61 1.3E-05 44.8 6.1 34 6-39 129-162 (326)
155 TIGR02371 ala_DH_arch alanine 90.4 0.42 9E-06 46.0 4.9 35 6-40 128-162 (325)
156 PTZ00345 glycerol-3-phosphate 90.3 0.68 1.5E-05 45.3 6.3 23 6-28 11-33 (365)
157 cd01483 E1_enzyme_family Super 90.1 0.55 1.2E-05 39.2 4.9 22 8-29 1-22 (143)
158 PRK06522 2-dehydropantoate 2-r 90.1 1.3 2.8E-05 41.4 8.0 29 8-37 2-30 (304)
159 COG0771 MurD UDP-N-acetylmuram 90.1 1.7 3.7E-05 43.7 9.0 90 6-123 7-96 (448)
160 TIGR01915 npdG NADPH-dependent 90.0 0.65 1.4E-05 41.8 5.6 28 8-36 2-30 (219)
161 PF00208 ELFV_dehydrog: Glutam 89.9 0.47 1E-05 43.8 4.6 106 7-127 33-146 (244)
162 TIGR01035 hemA glutamyl-tRNA r 89.8 0.64 1.4E-05 46.3 5.8 31 7-37 181-211 (417)
163 PRK06444 prephenate dehydrogen 89.6 0.59 1.3E-05 41.7 4.9 22 7-28 1-23 (197)
164 COG0039 Mdh Malate/lactate deh 89.5 2.9 6.2E-05 40.0 9.7 23 7-29 1-23 (313)
165 PRK12921 2-dehydropantoate 2-r 89.4 1.2 2.6E-05 41.8 7.2 29 7-36 1-29 (305)
166 PLN00203 glutamyl-tRNA reducta 89.3 0.81 1.8E-05 46.9 6.3 32 6-37 266-297 (519)
167 PRK14031 glutamate dehydrogena 89.1 2.4 5.2E-05 42.6 9.2 102 7-125 229-340 (444)
168 PRK06719 precorrin-2 dehydroge 89.0 2.7 5.9E-05 35.9 8.5 29 7-36 14-42 (157)
169 PRK06487 glycerate dehydrogena 88.9 0.52 1.1E-05 45.1 4.4 30 7-37 149-178 (317)
170 PRK00045 hemA glutamyl-tRNA re 88.8 0.84 1.8E-05 45.5 5.9 32 7-39 183-214 (423)
171 PRK08410 2-hydroxyacid dehydro 88.8 0.53 1.2E-05 45.0 4.3 30 7-37 146-175 (311)
172 cd05293 LDH_1 A subgroup of L- 88.8 1.2 2.6E-05 42.6 6.7 30 7-36 4-34 (312)
173 PRK05476 S-adenosyl-L-homocyst 88.5 0.93 2E-05 45.3 5.9 29 7-36 213-241 (425)
174 cd01080 NAD_bind_m-THF_DH_Cycl 88.5 1.8 3.9E-05 37.6 7.0 30 7-37 45-75 (168)
175 PRK14030 glutamate dehydrogena 88.5 3.1 6.8E-05 41.7 9.6 105 7-126 229-342 (445)
176 PRK06718 precorrin-2 dehydroge 88.4 2.2 4.7E-05 38.2 7.7 30 7-37 11-40 (202)
177 PRK05442 malate dehydrogenase; 88.3 2.7 5.9E-05 40.4 8.8 23 6-28 4-27 (326)
178 COG0345 ProC Pyrroline-5-carbo 88.3 1.5 3.2E-05 41.0 6.7 33 7-39 2-36 (266)
179 PRK05479 ketol-acid reductoiso 88.2 0.77 1.7E-05 44.3 4.9 30 7-37 18-47 (330)
180 TIGR01470 cysG_Nterm siroheme 88.1 1.6 3.5E-05 39.1 6.7 87 7-123 10-97 (205)
181 PRK07236 hypothetical protein; 88.1 0.69 1.5E-05 45.1 4.7 36 1-37 1-36 (386)
182 PRK06932 glycerate dehydrogena 88.1 0.66 1.4E-05 44.4 4.4 29 7-36 148-176 (314)
183 PLN02214 cinnamoyl-CoA reducta 88.0 2.7 6E-05 40.3 8.7 31 6-37 10-41 (342)
184 PF03721 UDPG_MGDP_dh_N: UDP-g 87.9 0.61 1.3E-05 41.1 3.8 29 7-36 1-29 (185)
185 PRK14982 acyl-ACP reductase; P 87.8 0.78 1.7E-05 44.5 4.7 32 6-37 155-188 (340)
186 PRK05678 succinyl-CoA syntheta 87.5 1.9 4.1E-05 40.9 7.0 88 6-129 8-99 (291)
187 TIGR01202 bchC 2-desacetyl-2-h 87.5 2.8 6.1E-05 39.5 8.3 84 8-126 147-230 (308)
188 TIGR00518 alaDH alanine dehydr 87.4 1.3 2.9E-05 43.4 6.2 29 7-36 168-196 (370)
189 PRK08655 prephenate dehydrogen 87.4 1.3 2.8E-05 44.4 6.2 28 8-36 2-30 (437)
190 PRK15409 bifunctional glyoxyla 87.3 0.75 1.6E-05 44.2 4.3 29 7-36 146-175 (323)
191 cd01487 E1_ThiF_like E1_ThiF_l 87.3 0.98 2.1E-05 39.3 4.7 22 8-29 1-22 (174)
192 PRK07574 formate dehydrogenase 87.1 0.79 1.7E-05 45.2 4.4 30 7-37 193-222 (385)
193 TIGR00243 Dxr 1-deoxy-D-xylulo 87.0 0.99 2.1E-05 44.3 4.9 112 7-127 2-123 (389)
194 PRK11559 garR tartronate semia 87.0 0.81 1.8E-05 43.0 4.3 32 6-39 2-33 (296)
195 PF01073 3Beta_HSD: 3-beta hyd 86.9 2 4.2E-05 40.4 6.8 29 11-39 2-31 (280)
196 COG0111 SerA Phosphoglycerate 86.8 0.85 1.8E-05 43.9 4.4 30 7-37 143-172 (324)
197 PRK14106 murD UDP-N-acetylmura 86.8 3.4 7.4E-05 41.2 8.9 34 4-39 3-36 (450)
198 PLN02928 oxidoreductase family 86.7 0.85 1.8E-05 44.3 4.3 30 7-37 160-189 (347)
199 PRK09880 L-idonate 5-dehydroge 86.6 2.7 5.9E-05 40.2 7.8 94 7-126 171-265 (343)
200 TIGR03376 glycerol3P_DH glycer 86.6 1.8 3.8E-05 42.0 6.5 21 8-28 1-21 (342)
201 TIGR00936 ahcY adenosylhomocys 86.5 1.6 3.5E-05 43.3 6.2 29 7-36 196-224 (406)
202 PRK11908 NAD-dependent epimera 86.5 0.98 2.1E-05 43.3 4.6 31 7-37 2-33 (347)
203 PRK11064 wecC UDP-N-acetyl-D-m 86.5 0.94 2E-05 45.1 4.6 31 6-37 3-33 (415)
204 PRK05808 3-hydroxybutyryl-CoA 86.4 0.96 2.1E-05 42.3 4.5 30 6-36 3-32 (282)
205 PRK12825 fabG 3-ketoacyl-(acyl 86.2 1.3 2.8E-05 39.5 5.0 36 1-37 1-37 (249)
206 PLN02545 3-hydroxybutyryl-CoA 86.2 1.2 2.7E-05 41.9 5.0 29 7-36 5-33 (295)
207 PRK06436 glycerate dehydrogena 86.1 0.99 2.1E-05 43.0 4.3 30 7-37 123-152 (303)
208 PRK15469 ghrA bifunctional gly 85.5 1.1 2.5E-05 42.8 4.5 30 7-37 137-166 (312)
209 PTZ00325 malate dehydrogenase; 85.5 6.3 0.00014 37.9 9.6 25 6-30 8-33 (321)
210 COG1052 LdhA Lactate dehydroge 85.3 1.1 2.3E-05 43.2 4.2 29 7-36 147-175 (324)
211 TIGR01757 Malate-DH_plant mala 85.3 4.9 0.00011 39.7 8.9 24 6-29 44-68 (387)
212 TIGR01019 sucCoAalpha succinyl 85.3 2.6 5.7E-05 39.8 6.7 90 7-130 7-98 (286)
213 PRK13243 glyoxylate reductase; 85.2 1.1 2.4E-05 43.2 4.3 29 7-36 151-179 (333)
214 PRK12480 D-lactate dehydrogena 85.1 1.2 2.7E-05 42.9 4.5 30 7-37 147-176 (330)
215 PRK00683 murD UDP-N-acetylmura 84.9 4.2 9.2E-05 40.3 8.4 83 7-123 4-86 (418)
216 PLN02602 lactate dehydrogenase 84.7 2.4 5.2E-05 41.3 6.3 30 7-36 38-68 (350)
217 PRK06130 3-hydroxybutyryl-CoA 84.6 1.6 3.5E-05 41.3 5.0 29 7-36 5-33 (311)
218 KOG2711 Glycerol-3-phosphate d 84.5 4.4 9.5E-05 39.1 7.8 24 4-27 19-42 (372)
219 PLN02494 adenosylhomocysteinas 84.4 2.3 4.9E-05 43.0 6.1 29 7-36 255-283 (477)
220 PF00070 Pyr_redox: Pyridine n 84.3 2.1 4.5E-05 31.8 4.6 30 8-38 1-30 (80)
221 PLN02306 hydroxypyruvate reduc 84.3 1.4 3E-05 43.5 4.5 29 7-36 166-195 (386)
222 PRK01438 murD UDP-N-acetylmura 84.2 6.6 0.00014 39.5 9.6 89 6-122 16-104 (480)
223 TIGR02356 adenyl_thiF thiazole 84.2 0.96 2.1E-05 40.4 3.1 30 6-36 21-51 (202)
224 PRK05653 fabG 3-ketoacyl-(acyl 84.0 1.8 3.8E-05 38.6 4.8 34 3-37 2-36 (246)
225 PRK11790 D-3-phosphoglycerate 84.0 1.3 2.9E-05 43.9 4.4 30 7-37 152-181 (409)
226 cd01075 NAD_bind_Leu_Phe_Val_D 83.9 1.6 3.5E-05 38.9 4.5 31 7-39 29-59 (200)
227 COG1087 GalE UDP-glucose 4-epi 83.7 1.8 4E-05 41.1 4.8 31 8-39 2-33 (329)
228 PRK15438 erythronate-4-phospha 83.5 1.4 3.1E-05 43.3 4.3 29 7-36 117-145 (378)
229 PRK03369 murD UDP-N-acetylmura 83.3 5.3 0.00012 40.6 8.5 84 7-123 13-97 (488)
230 PF00899 ThiF: ThiF family; I 83.2 0.57 1.2E-05 38.7 1.2 42 7-48 3-44 (135)
231 PLN03139 formate dehydrogenase 83.2 1.4 3.1E-05 43.4 4.1 29 7-36 200-228 (386)
232 PRK06153 hypothetical protein; 83.2 1.7 3.6E-05 42.8 4.5 30 7-36 177-206 (393)
233 PRK12439 NAD(P)H-dependent gly 83.2 2.7 5.8E-05 40.6 6.0 25 6-30 7-31 (341)
234 TIGR00561 pntA NAD(P) transhyd 83.1 2.5 5.4E-05 43.2 5.9 31 7-39 165-195 (511)
235 cd00704 MDH Malate dehydrogena 83.1 6.1 0.00013 38.0 8.4 23 7-29 1-24 (323)
236 PLN03209 translocon at the inn 83.0 3 6.6E-05 43.2 6.5 30 7-37 81-111 (576)
237 PLN02986 cinnamyl-alcohol dehy 82.7 4.3 9.4E-05 38.2 7.2 31 7-38 6-37 (322)
238 PLN00112 malate dehydrogenase 82.6 7.4 0.00016 39.1 9.0 23 6-28 100-123 (444)
239 PRK09424 pntA NAD(P) transhydr 82.6 9 0.00019 39.2 9.7 31 7-39 166-196 (509)
240 PLN02662 cinnamyl-alcohol dehy 82.5 3.4 7.4E-05 38.7 6.4 30 7-37 5-35 (322)
241 TIGR02992 ectoine_eutC ectoine 82.5 2.6 5.7E-05 40.5 5.6 34 6-39 129-162 (326)
242 PF02737 3HCDH_N: 3-hydroxyacy 82.5 1.9 4.2E-05 37.7 4.3 28 8-36 1-28 (180)
243 cd01338 MDH_choloroplast_like 82.4 3.4 7.5E-05 39.7 6.4 24 6-29 2-26 (322)
244 PRK08644 thiamine biosynthesis 82.3 1.6 3.4E-05 39.4 3.7 24 6-29 28-51 (212)
245 PRK04690 murD UDP-N-acetylmura 82.3 3.7 8.1E-05 41.4 6.9 87 6-123 8-96 (468)
246 cd01486 Apg7 Apg7 is an E1-lik 82.1 1.1 2.4E-05 42.7 2.8 22 8-29 1-22 (307)
247 cd08230 glucose_DH Glucose deh 81.7 8.8 0.00019 36.8 9.0 31 7-38 174-204 (355)
248 PRK14806 bifunctional cyclohex 81.6 3.6 7.8E-05 43.9 6.8 30 7-36 4-34 (735)
249 cd00757 ThiF_MoeB_HesA_family 81.5 1.3 2.7E-05 40.3 2.9 32 6-38 21-52 (228)
250 COG0743 Dxr 1-deoxy-D-xylulose 81.4 1.9 4.2E-05 41.8 4.1 33 7-39 2-36 (385)
251 PRK07326 short chain dehydroge 81.4 2.5 5.3E-05 37.7 4.7 36 1-37 1-37 (237)
252 PRK14194 bifunctional 5,10-met 81.4 5 0.00011 38.2 6.9 31 7-38 160-191 (301)
253 cd00300 LDH_like L-lactate deh 81.1 5.7 0.00012 37.6 7.3 31 9-39 1-31 (300)
254 PRK08219 short chain dehydroge 81.0 2.1 4.5E-05 37.8 4.1 31 5-37 2-33 (227)
255 PRK07530 3-hydroxybutyryl-CoA 80.8 2.6 5.6E-05 39.6 4.8 31 5-36 3-33 (292)
256 PLN02427 UDP-apiose/xylose syn 80.8 2.3 5E-05 41.4 4.6 32 6-37 14-46 (386)
257 PRK08291 ectoine utilization p 80.6 3.6 7.8E-05 39.6 5.8 33 7-39 133-165 (330)
258 PRK05690 molybdopterin biosynt 80.4 2.1 4.6E-05 39.4 4.0 23 7-29 33-55 (245)
259 PLN02712 arogenate dehydrogena 80.1 2.5 5.5E-05 44.7 4.9 31 6-37 52-82 (667)
260 PRK07340 ornithine cyclodeamin 80.1 2.1 4.6E-05 40.7 4.0 33 6-39 125-158 (304)
261 PRK06035 3-hydroxyacyl-CoA deh 80.0 2.8 6E-05 39.4 4.7 29 7-36 4-32 (291)
262 PLN02353 probable UDP-glucose 79.9 2.5 5.3E-05 42.9 4.6 31 7-37 2-33 (473)
263 PRK00257 erythronate-4-phospha 79.7 2.4 5.1E-05 41.8 4.3 29 7-36 117-145 (381)
264 PRK00421 murC UDP-N-acetylmura 79.7 9.2 0.0002 38.4 8.7 32 6-39 7-39 (461)
265 PRK12826 3-ketoacyl-(acyl-carr 79.6 3.2 6.9E-05 37.2 4.9 36 1-37 1-37 (251)
266 TIGR02354 thiF_fam2 thiamine b 79.6 1.8 3.9E-05 38.6 3.1 33 6-39 21-53 (200)
267 PRK03806 murD UDP-N-acetylmura 79.5 8.4 0.00018 38.3 8.3 90 1-122 1-91 (438)
268 cd01484 E1-2_like Ubiquitin ac 79.5 2.7 5.8E-05 38.6 4.3 111 8-124 1-120 (234)
269 PRK12827 short chain dehydroge 79.1 3.2 6.9E-05 37.1 4.7 36 1-37 1-37 (249)
270 cd08237 ribitol-5-phosphate_DH 79.1 6.2 0.00014 37.7 7.0 30 8-37 166-196 (341)
271 PRK08293 3-hydroxybutyryl-CoA 79.0 3.2 6.8E-05 39.0 4.8 30 6-36 3-32 (287)
272 PLN02586 probable cinnamyl alc 78.6 9.2 0.0002 36.9 8.1 30 8-38 186-215 (360)
273 PLN02240 UDP-glucose 4-epimera 78.4 3.3 7.2E-05 39.4 4.8 35 1-37 1-36 (352)
274 PF02719 Polysacc_synt_2: Poly 78.3 1.9 4.2E-05 40.8 3.1 47 95-141 76-141 (293)
275 COG0334 GdhA Glutamate dehydro 78.0 11 0.00023 37.4 8.1 32 7-39 208-239 (411)
276 TIGR01327 PGDH D-3-phosphoglyc 77.6 2.9 6.3E-05 43.0 4.4 30 7-37 139-168 (525)
277 TIGR03026 NDP-sugDHase nucleot 77.6 2.7 5.9E-05 41.6 4.1 29 8-37 2-30 (411)
278 PLN02695 GDP-D-mannose-3',5'-e 77.6 3.8 8.1E-05 39.9 5.0 31 6-37 21-52 (370)
279 cd01490 Ube1_repeat2 Ubiquitin 77.3 5.6 0.00012 39.9 6.1 22 8-29 1-22 (435)
280 PRK15181 Vi polysaccharide bio 77.2 3.3 7.2E-05 39.8 4.4 32 6-38 15-47 (348)
281 PRK13581 D-3-phosphoglycerate 77.1 3 6.6E-05 42.8 4.3 30 7-37 141-170 (526)
282 PRK15461 NADH-dependent gamma- 77.0 3.2 6.9E-05 39.2 4.2 31 7-39 2-32 (296)
283 PRK08773 2-octaprenyl-3-methyl 77.0 3.7 8.1E-05 40.0 4.8 36 1-37 1-36 (392)
284 PF04321 RmlD_sub_bind: RmlD s 77.0 3.7 8E-05 38.5 4.6 31 7-38 1-32 (286)
285 cd08281 liver_ADH_like1 Zinc-d 76.8 9.2 0.0002 37.0 7.5 32 96-127 259-290 (371)
286 PRK13403 ketol-acid reductoiso 76.7 3.6 7.8E-05 39.6 4.4 32 7-39 17-48 (335)
287 TIGR03366 HpnZ_proposed putati 76.5 11 0.00023 34.9 7.6 32 96-127 187-218 (280)
288 PRK06129 3-hydroxyacyl-CoA deh 76.5 3.5 7.5E-05 39.1 4.3 29 7-36 3-31 (308)
289 COG1064 AdhP Zn-dependent alco 76.4 16 0.00034 35.5 8.7 94 7-129 168-261 (339)
290 COG1832 Predicted CoA-binding 76.4 14 0.0003 31.0 7.2 82 7-125 17-102 (140)
291 KOG1399 Flavin-containing mono 76.4 2.9 6.3E-05 42.1 3.9 33 3-36 3-35 (448)
292 PLN02350 phosphogluconate dehy 76.1 3 6.5E-05 42.5 3.9 37 1-39 1-37 (493)
293 PRK09599 6-phosphogluconate de 75.9 3.7 8.1E-05 38.8 4.3 30 8-39 2-31 (301)
294 COG3268 Uncharacterized conser 75.8 3.9 8.4E-05 39.4 4.3 102 1-129 1-106 (382)
295 PRK12475 thiamine/molybdopteri 75.8 5.5 0.00012 38.5 5.5 32 7-39 25-56 (338)
296 PRK00258 aroE shikimate 5-dehy 75.7 8.4 0.00018 36.0 6.6 32 7-39 124-155 (278)
297 PF00670 AdoHcyase_NAD: S-aden 75.4 6.3 0.00014 34.0 5.2 31 7-39 24-54 (162)
298 PRK11730 fadB multifunctional 75.4 2.1 4.5E-05 45.7 2.7 29 7-36 314-342 (715)
299 PRK12490 6-phosphogluconate de 75.1 4.1 8.9E-05 38.5 4.4 30 8-39 2-31 (299)
300 TIGR00872 gnd_rel 6-phosphoglu 75.1 4 8.7E-05 38.6 4.3 28 8-36 2-29 (298)
301 TIGR03451 mycoS_dep_FDH mycoth 75.0 18 0.00039 34.7 9.0 30 7-37 178-208 (358)
302 TIGR03855 NAD_NadX aspartate d 75.0 3.1 6.7E-05 38.0 3.4 33 96-128 37-69 (229)
303 PRK07806 short chain dehydroge 75.0 5.2 0.00011 35.9 4.9 36 1-37 1-37 (248)
304 PLN00141 Tic62-NAD(P)-related 75.0 4.5 9.7E-05 36.8 4.5 31 6-37 17-48 (251)
305 PRK04308 murD UDP-N-acetylmura 74.9 13 0.00028 37.0 8.2 29 7-36 6-34 (445)
306 TIGR02437 FadB fatty oxidation 74.7 3.2 7E-05 44.3 3.9 29 7-36 314-342 (714)
307 COG1252 Ndh NADH dehydrogenase 74.6 4.7 0.0001 40.0 4.8 35 5-39 2-37 (405)
308 PRK15182 Vi polysaccharide bio 74.6 4.5 9.8E-05 40.4 4.7 31 5-37 5-35 (425)
309 PRK01710 murD UDP-N-acetylmura 74.5 9.1 0.0002 38.4 7.0 31 7-39 15-45 (458)
310 PRK11154 fadJ multifunctional 74.4 3.2 7E-05 44.2 3.8 30 7-36 310-339 (708)
311 COG5322 Predicted dehydrogenas 74.4 11 0.00024 35.3 6.8 24 7-30 168-192 (351)
312 KOG0455 Homoserine dehydrogena 74.4 3.7 8E-05 38.0 3.6 35 5-39 2-44 (364)
313 PRK06141 ornithine cyclodeamin 74.3 5.6 0.00012 38.0 5.1 33 6-39 125-158 (314)
314 PRK02006 murD UDP-N-acetylmura 74.2 11 0.00024 38.2 7.6 31 7-39 8-38 (498)
315 cd00650 LDH_MDH_like NAD-depen 74.1 14 0.0003 34.1 7.6 21 9-29 1-22 (263)
316 PRK15116 sulfur acceptor prote 74.1 5.8 0.00012 37.2 5.0 24 6-29 30-53 (268)
317 PLN02657 3,8-divinyl protochlo 74.1 4.9 0.00011 39.6 4.8 32 6-38 60-92 (390)
318 PRK13940 glutamyl-tRNA reducta 74.0 5.1 0.00011 39.9 4.9 32 7-39 182-213 (414)
319 TIGR02355 moeB molybdopterin s 74.0 4 8.6E-05 37.5 3.9 23 7-29 25-47 (240)
320 PRK13394 3-hydroxybutyrate deh 74.0 5.6 0.00012 35.9 4.9 36 1-37 2-38 (262)
321 TIGR01087 murD UDP-N-acetylmur 74.0 11 0.00024 37.3 7.4 30 8-39 1-30 (433)
322 TIGR01505 tartro_sem_red 2-hyd 73.9 3.7 7.9E-05 38.5 3.7 30 8-39 1-30 (291)
323 TIGR01759 MalateDH-SF1 malate 73.9 8.1 0.00017 37.2 6.1 25 5-29 2-27 (323)
324 PRK15057 UDP-glucose 6-dehydro 73.3 4.3 9.2E-05 40.1 4.1 28 8-37 2-29 (388)
325 KOG0069 Glyoxylate/hydroxypyru 73.3 2.8 6E-05 40.5 2.7 22 7-28 163-184 (336)
326 COG1893 ApbA Ketopantoate redu 73.3 11 0.00025 35.8 6.9 23 7-29 1-23 (307)
327 cd01336 MDH_cytoplasmic_cytoso 73.2 5.3 0.00012 38.4 4.7 31 6-36 2-39 (325)
328 PRK08703 short chain dehydroge 73.0 6.2 0.00013 35.3 4.9 36 1-37 1-37 (239)
329 KOG0024 Sorbitol dehydrogenase 73.0 11 0.00025 36.1 6.7 29 96-124 242-270 (354)
330 PRK12742 oxidoreductase; Provi 72.7 6.3 0.00014 35.0 4.8 35 1-36 1-36 (237)
331 cd05292 LDH_2 A subgroup of L- 72.7 4.9 0.00011 38.3 4.3 32 8-39 2-33 (308)
332 PRK06407 ornithine cyclodeamin 72.6 7.7 0.00017 36.9 5.6 33 7-39 118-150 (301)
333 PRK09260 3-hydroxybutyryl-CoA 72.2 5.1 0.00011 37.5 4.3 29 7-36 2-30 (288)
334 PRK14573 bifunctional D-alanyl 72.0 16 0.00036 39.5 8.6 32 6-39 4-36 (809)
335 COG1086 Predicted nucleoside-d 72.0 9.8 0.00021 39.2 6.4 116 7-141 251-389 (588)
336 cd08239 THR_DH_like L-threonin 71.8 8.3 0.00018 36.5 5.7 30 7-37 165-195 (339)
337 PRK14188 bifunctional 5,10-met 71.8 12 0.00026 35.6 6.6 30 7-37 159-189 (296)
338 PLN02572 UDP-sulfoquinovose sy 71.8 5.5 0.00012 39.9 4.6 32 5-37 46-78 (442)
339 PLN02989 cinnamyl-alcohol dehy 71.8 6.6 0.00014 37.0 5.0 34 1-36 1-35 (325)
340 PRK06199 ornithine cyclodeamin 71.7 8.7 0.00019 37.8 5.9 34 6-39 155-189 (379)
341 PRK14175 bifunctional 5,10-met 71.4 17 0.00036 34.5 7.4 30 7-37 159-189 (286)
342 PRK10083 putative oxidoreducta 71.2 13 0.00028 35.1 6.8 32 96-127 228-259 (339)
343 PRK05600 thiamine biosynthesis 71.1 3.5 7.5E-05 40.5 2.9 115 6-124 41-160 (370)
344 PRK06194 hypothetical protein; 71.1 6.8 0.00015 36.1 4.8 35 1-36 1-36 (287)
345 PRK10309 galactitol-1-phosphat 71.0 9.1 0.0002 36.4 5.8 29 7-36 162-191 (347)
346 PRK08223 hypothetical protein; 70.8 11 0.00023 35.8 6.0 23 7-29 28-50 (287)
347 PRK05562 precorrin-2 dehydroge 70.8 15 0.00032 33.4 6.8 29 7-36 26-54 (223)
348 PLN00198 anthocyanidin reducta 70.7 6.2 0.00014 37.5 4.6 32 5-37 8-40 (338)
349 cd01492 Aos1_SUMO Ubiquitin ac 70.6 7.5 0.00016 34.5 4.8 32 7-39 22-53 (197)
350 cd08298 CAD2 Cinnamyl alcohol 70.5 25 0.00055 32.8 8.7 85 8-125 170-254 (329)
351 PLN02514 cinnamyl-alcohol dehy 70.5 11 0.00025 36.2 6.4 94 7-127 182-275 (357)
352 COG4529 Uncharacterized protei 70.5 5.1 0.00011 40.3 3.9 33 6-38 1-34 (474)
353 PRK07688 thiamine/molybdopteri 70.5 8.4 0.00018 37.3 5.4 31 6-37 24-55 (339)
354 PF02254 TrkA_N: TrkA-N domain 70.4 7.7 0.00017 30.6 4.4 29 9-38 1-29 (116)
355 PRK04663 murD UDP-N-acetylmura 70.3 18 0.00038 36.1 7.8 86 7-123 8-95 (438)
356 PRK08125 bifunctional UDP-gluc 70.3 6.1 0.00013 41.7 4.7 33 6-38 315-348 (660)
357 PRK09135 pteridine reductase; 70.1 7.9 0.00017 34.5 4.9 36 1-37 1-37 (249)
358 PRK12746 short chain dehydroge 70.0 8.3 0.00018 34.7 5.0 35 1-36 1-36 (254)
359 PLN02166 dTDP-glucose 4,6-dehy 70.0 5.8 0.00013 39.7 4.3 31 7-38 121-152 (436)
360 PRK06500 short chain dehydroge 69.9 7.8 0.00017 34.6 4.8 35 1-36 1-36 (249)
361 TIGR00507 aroE shikimate 5-deh 69.3 15 0.00032 34.1 6.7 30 7-37 118-147 (270)
362 PRK07531 bifunctional 3-hydrox 69.2 7.3 0.00016 39.7 4.9 31 7-39 5-35 (495)
363 PRK07454 short chain dehydroge 69.1 8.8 0.00019 34.2 5.0 36 1-37 1-37 (241)
364 PLN02260 probable rhamnose bio 68.9 6.9 0.00015 41.3 4.8 33 5-37 5-39 (668)
365 PLN02778 3,5-epimerase/4-reduc 68.8 8 0.00017 36.4 4.8 28 6-34 9-37 (298)
366 cd01488 Uba3_RUB Ubiquitin act 68.8 5.7 0.00012 37.7 3.7 30 8-38 1-30 (291)
367 cd01485 E1-1_like Ubiquitin ac 68.7 7.2 0.00016 34.6 4.2 31 7-38 20-50 (198)
368 PLN02206 UDP-glucuronate decar 68.2 6.5 0.00014 39.4 4.2 30 7-37 120-150 (442)
369 PRK06847 hypothetical protein; 68.2 7.5 0.00016 37.4 4.6 33 1-36 1-33 (375)
370 PRK15059 tartronate semialdehy 67.7 7.3 0.00016 36.8 4.2 26 8-34 2-27 (292)
371 TIGR01763 MalateDH_bact malate 67.6 7.7 0.00017 36.9 4.4 30 7-36 2-31 (305)
372 PF01370 Epimerase: NAD depend 67.6 8.7 0.00019 33.9 4.6 30 9-39 1-31 (236)
373 PRK07877 hypothetical protein; 67.6 5 0.00011 42.8 3.4 112 7-124 108-225 (722)
374 PRK00141 murD UDP-N-acetylmura 67.4 23 0.00049 35.8 8.0 31 7-39 16-46 (473)
375 PLN02740 Alcohol dehydrogenase 67.1 22 0.00048 34.5 7.7 29 8-37 201-230 (381)
376 PRK14179 bifunctional 5,10-met 67.0 17 0.00038 34.3 6.5 26 7-33 159-185 (284)
377 PRK12939 short chain dehydroge 67.0 9.8 0.00021 33.9 4.8 36 1-37 2-38 (250)
378 TIGR03201 dearomat_had 6-hydro 66.9 26 0.00056 33.5 8.0 30 7-37 168-197 (349)
379 PTZ00075 Adenosylhomocysteinas 66.8 8.2 0.00018 39.1 4.6 29 7-36 255-283 (476)
380 COG0702 Predicted nucleoside-d 66.6 7.5 0.00016 35.2 4.1 31 8-39 2-33 (275)
381 TIGR03466 HpnA hopanoid-associ 66.4 7.3 0.00016 36.4 4.0 30 8-38 2-32 (328)
382 PRK12829 short chain dehydroge 66.4 8.3 0.00018 34.8 4.3 31 6-37 11-42 (264)
383 TIGR01181 dTDP_gluc_dehyt dTDP 66.4 6.7 0.00015 36.3 3.7 30 8-37 1-32 (317)
384 PRK07666 fabG 3-ketoacyl-(acyl 66.4 11 0.00024 33.6 5.0 30 7-37 8-38 (239)
385 PRK09987 dTDP-4-dehydrorhamnos 66.2 7.3 0.00016 36.5 3.9 27 8-36 2-29 (299)
386 PF01262 AlaDh_PNT_C: Alanine 66.1 11 0.00025 32.2 4.8 32 6-38 20-51 (168)
387 PLN02178 cinnamyl-alcohol dehy 66.0 20 0.00044 34.9 7.2 31 7-38 180-210 (375)
388 TIGR00465 ilvC ketol-acid redu 65.9 8.3 0.00018 36.9 4.3 30 7-37 4-33 (314)
389 cd05291 HicDH_like L-2-hydroxy 65.7 9.8 0.00021 36.1 4.7 30 8-37 2-32 (306)
390 PRK09496 trkA potassium transp 65.0 8.4 0.00018 38.3 4.3 29 8-37 2-30 (453)
391 TIGR01381 E1_like_apg7 E1-like 64.9 3.8 8.2E-05 42.9 1.8 23 7-29 339-361 (664)
392 PRK07066 3-hydroxybutyryl-CoA 64.9 9.7 0.00021 36.6 4.5 31 7-39 8-38 (321)
393 PRK10675 UDP-galactose-4-epime 64.8 8.8 0.00019 36.3 4.2 29 8-37 2-31 (338)
394 PRK03803 murD UDP-N-acetylmura 64.6 21 0.00046 35.6 7.1 30 8-39 8-37 (448)
395 PRK08163 salicylate hydroxylas 64.5 9.3 0.0002 37.1 4.5 30 6-36 4-33 (396)
396 COG0677 WecC UDP-N-acetyl-D-ma 64.5 7 0.00015 38.6 3.4 30 6-36 9-38 (436)
397 PRK04965 NADH:flavorubredoxin 64.5 8.4 0.00018 37.4 4.1 32 7-38 3-35 (377)
398 PRK08226 short chain dehydroge 64.2 12 0.00026 33.9 4.9 36 1-37 1-37 (263)
399 PTZ00142 6-phosphogluconate de 64.0 8.1 0.00018 39.2 4.0 31 7-39 2-32 (470)
400 PRK10217 dTDP-glucose 4,6-dehy 64.0 8.7 0.00019 36.7 4.1 31 7-38 2-33 (355)
401 PLN02827 Alcohol dehydrogenase 64.0 24 0.00051 34.4 7.2 29 7-36 195-224 (378)
402 PRK07523 gluconate 5-dehydroge 64.0 12 0.00026 33.8 4.8 29 7-36 11-40 (255)
403 PRK06185 hypothetical protein; 63.5 9.5 0.0002 37.2 4.3 36 1-37 1-36 (407)
404 PLN02896 cinnamyl-alcohol dehy 63.4 12 0.00025 35.9 4.9 31 6-37 10-41 (353)
405 PF00743 FMO-like: Flavin-bind 63.3 12 0.00025 38.6 5.0 32 7-39 2-33 (531)
406 PRK12549 shikimate 5-dehydroge 63.3 14 0.0003 34.8 5.2 32 7-39 128-159 (284)
407 KOG3923 D-aspartate oxidase [A 63.1 9.3 0.0002 36.4 3.9 35 5-39 2-42 (342)
408 PRK11150 rfaD ADP-L-glycero-D- 63.1 9.6 0.00021 35.6 4.1 30 9-39 2-32 (308)
409 PRK08264 short chain dehydroge 62.9 13 0.00028 33.0 4.8 31 6-36 6-37 (238)
410 COG1086 Predicted nucleoside-d 62.9 10 0.00023 39.0 4.5 35 5-39 115-149 (588)
411 PRK02705 murD UDP-N-acetylmura 62.8 23 0.0005 35.3 7.0 30 8-39 2-31 (459)
412 PLN02686 cinnamoyl-CoA reducta 62.8 12 0.00027 36.2 5.0 34 4-38 51-85 (367)
413 PRK01368 murD UDP-N-acetylmura 62.7 42 0.00091 33.8 8.8 30 7-39 7-36 (454)
414 PRK07774 short chain dehydroge 62.6 14 0.0003 33.0 5.0 36 1-37 1-37 (250)
415 KOG2733 Uncharacterized membra 62.5 11 0.00024 36.8 4.3 107 6-129 5-118 (423)
416 PRK07023 short chain dehydroge 62.5 11 0.00024 33.7 4.2 30 7-37 2-32 (243)
417 COG1062 AdhC Zn-dependent alco 62.4 18 0.0004 35.0 5.8 96 8-126 188-284 (366)
418 TIGR01214 rmlD dTDP-4-dehydror 62.3 9.9 0.00021 34.9 4.0 29 8-37 1-30 (287)
419 PRK07453 protochlorophyllide o 62.2 14 0.0003 34.9 5.1 36 1-37 1-37 (322)
420 PRK06823 ornithine cyclodeamin 61.9 16 0.00034 35.0 5.4 34 6-39 128-161 (315)
421 cd05212 NAD_bind_m-THF_DH_Cycl 61.9 33 0.00071 28.8 6.7 29 7-36 29-58 (140)
422 PRK08268 3-hydroxy-acyl-CoA de 61.9 13 0.00028 38.1 5.0 29 7-36 8-36 (507)
423 cd01489 Uba2_SUMO Ubiquitin ac 61.6 15 0.00032 35.3 5.0 111 8-125 1-120 (312)
424 PRK06180 short chain dehydroge 61.3 14 0.0003 33.9 4.8 31 6-37 4-35 (277)
425 cd08296 CAD_like Cinnamyl alco 61.1 25 0.00055 33.1 6.7 94 8-127 166-259 (333)
426 COG1023 Gnd Predicted 6-phosph 60.9 8.9 0.00019 35.4 3.2 29 7-36 1-29 (300)
427 PRK08328 hypothetical protein; 60.8 33 0.00072 31.1 7.1 23 7-29 28-50 (231)
428 TIGR02825 B4_12hDH leukotriene 60.6 17 0.00038 34.1 5.4 30 8-38 141-171 (325)
429 PRK06398 aldose dehydrogenase; 60.6 16 0.00034 33.3 5.0 35 1-36 1-36 (258)
430 KOG1430 C-3 sterol dehydrogena 60.5 14 0.00031 36.0 4.8 33 6-39 4-38 (361)
431 TIGR03219 salicylate_mono sali 60.3 11 0.00024 36.9 4.2 30 7-36 1-30 (414)
432 PLN02650 dihydroflavonol-4-red 60.3 12 0.00027 35.7 4.4 31 6-37 5-36 (351)
433 TIGR03589 PseB UDP-N-acetylglu 60.1 13 0.00029 35.3 4.5 30 7-36 5-36 (324)
434 KOG0068 D-3-phosphoglycerate d 59.9 6.5 0.00014 38.0 2.3 23 7-29 147-169 (406)
435 PRK12744 short chain dehydroge 59.9 15 0.00034 33.1 4.8 36 1-37 1-39 (257)
436 PRK13512 coenzyme A disulfide 59.8 12 0.00027 37.2 4.4 33 7-39 2-35 (438)
437 cd01337 MDH_glyoxysomal_mitoch 59.8 14 0.0003 35.4 4.5 30 7-36 1-32 (310)
438 PRK06077 fabG 3-ketoacyl-(acyl 59.8 18 0.00038 32.4 5.1 37 1-38 1-38 (252)
439 cd00755 YgdL_like Family of ac 59.7 33 0.00072 31.3 6.8 24 6-29 11-34 (231)
440 PRK05335 tRNA (uracil-5-)-meth 59.3 12 0.00026 37.6 4.1 30 6-36 2-31 (436)
441 PRK10084 dTDP-glucose 4,6 dehy 59.2 12 0.00026 35.6 4.1 29 8-36 2-31 (352)
442 cd08242 MDR_like Medium chain 59.0 69 0.0015 29.8 9.2 87 7-125 157-243 (319)
443 PLN02172 flavin-containing mon 58.9 13 0.00028 37.5 4.5 31 6-37 10-40 (461)
444 PTZ00318 NADH dehydrogenase-li 58.9 16 0.00035 36.2 5.1 33 5-38 9-41 (424)
445 cd08278 benzyl_alcohol_DH Benz 58.9 47 0.001 31.9 8.2 33 95-127 253-285 (365)
446 COG1042 Acyl-CoA synthetase (N 58.8 32 0.00068 36.1 7.3 85 6-128 10-98 (598)
447 COG2907 Predicted NAD/FAD-bind 58.7 20 0.00043 35.1 5.3 34 6-39 8-41 (447)
448 PRK05732 2-octaprenyl-6-methox 58.6 13 0.00028 35.9 4.3 34 5-38 2-37 (395)
449 TIGR02819 fdhA_non_GSH formald 58.5 56 0.0012 32.1 8.7 31 8-39 188-218 (393)
450 cd05283 CAD1 Cinnamyl alcohol 58.5 62 0.0014 30.5 8.9 92 8-127 172-263 (337)
451 cd08293 PTGR2 Prostaglandin re 58.2 32 0.00069 32.5 6.8 31 7-38 156-188 (345)
452 PRK09291 short chain dehydroge 58.2 16 0.00035 32.8 4.6 31 7-38 3-34 (257)
453 PRK08589 short chain dehydroge 58.0 18 0.00038 33.2 4.9 36 1-37 1-37 (272)
454 PRK06198 short chain dehydroge 57.9 18 0.00039 32.6 4.8 35 1-36 1-37 (260)
455 PRK08132 FAD-dependent oxidore 57.8 13 0.00029 38.1 4.4 31 5-36 22-52 (547)
456 COG1091 RfbD dTDP-4-dehydrorha 57.7 13 0.00028 35.1 3.9 30 8-39 2-32 (281)
457 PRK08017 oxidoreductase; Provi 57.6 17 0.00037 32.6 4.6 30 7-37 3-33 (256)
458 cd08233 butanediol_DH_like (2R 57.5 50 0.0011 31.3 8.1 29 7-36 174-203 (351)
459 KOG2380 Prephenate dehydrogena 57.5 12 0.00027 36.2 3.7 25 6-30 52-76 (480)
460 PRK05565 fabG 3-ketoacyl-(acyl 57.5 17 0.00037 32.2 4.6 31 5-36 4-35 (247)
461 COG0451 WcaG Nucleoside-diphos 57.5 14 0.0003 34.1 4.2 30 8-38 2-32 (314)
462 PRK07231 fabG 3-ketoacyl-(acyl 57.4 19 0.00041 32.1 4.9 30 7-37 6-36 (251)
463 PRK05708 2-dehydropantoate 2-r 57.3 15 0.00033 34.7 4.4 30 6-36 2-31 (305)
464 PRK05086 malate dehydrogenase; 57.2 17 0.00036 34.8 4.6 30 7-36 1-33 (312)
465 PRK14851 hypothetical protein; 57.2 17 0.00036 38.7 5.0 23 7-29 44-66 (679)
466 PRK09126 hypothetical protein; 57.1 14 0.00031 35.7 4.3 32 5-37 2-33 (392)
467 COG0665 DadA Glycine/D-amino a 57.0 17 0.00036 35.0 4.7 33 5-38 3-35 (387)
468 PRK08762 molybdopterin biosynt 56.9 12 0.00026 36.6 3.7 24 6-29 135-158 (376)
469 cd05284 arabinose_DH_like D-ar 56.6 26 0.00057 32.9 5.9 32 7-38 169-200 (340)
470 PLN02583 cinnamoyl-CoA reducta 56.6 19 0.00041 33.7 4.9 30 7-37 7-37 (297)
471 PLN00106 malate dehydrogenase 56.6 16 0.00035 35.1 4.5 26 6-31 18-44 (323)
472 TIGR01472 gmd GDP-mannose 4,6- 56.5 14 0.00031 35.1 4.1 29 8-37 2-31 (343)
473 PRK02472 murD UDP-N-acetylmura 56.5 58 0.0012 32.3 8.6 31 7-39 6-36 (447)
474 COG0644 FixC Dehydrogenases (f 56.5 16 0.00034 35.9 4.5 33 5-38 2-34 (396)
475 PRK12409 D-amino acid dehydrog 56.4 15 0.00032 36.0 4.3 30 7-37 2-31 (410)
476 PRK10538 malonic semialdehyde 56.1 17 0.00038 32.6 4.4 29 8-37 2-31 (248)
477 PTZ00188 adrenodoxin reductase 56.1 17 0.00038 37.1 4.7 30 5-34 38-67 (506)
478 PRK05597 molybdopterin biosynt 55.8 12 0.00027 36.3 3.6 24 6-29 28-51 (355)
479 PRK09134 short chain dehydroge 55.7 23 0.00049 32.0 5.2 32 6-38 9-41 (258)
480 COG3320 Putative dehydrogenase 55.6 35 0.00076 33.5 6.5 32 8-39 2-34 (382)
481 cd08285 NADP_ADH NADP(H)-depen 55.5 64 0.0014 30.6 8.5 29 7-36 168-197 (351)
482 PRK07067 sorbitol dehydrogenas 55.1 21 0.00045 32.2 4.8 30 7-37 7-37 (257)
483 PRK08063 enoyl-(acyl carrier p 55.1 20 0.00044 31.9 4.7 31 7-38 5-36 (250)
484 cd08294 leukotriene_B4_DH_like 55.1 52 0.0011 30.6 7.7 30 8-38 146-176 (329)
485 PRK05993 short chain dehydroge 55.1 23 0.00049 32.6 5.1 30 7-37 5-35 (277)
486 cd08231 MDR_TM0436_like Hypoth 55.0 68 0.0015 30.5 8.6 31 7-38 179-210 (361)
487 PRK06179 short chain dehydroge 54.9 21 0.00046 32.4 4.8 30 7-37 5-35 (270)
488 PRK11259 solA N-methyltryptoph 54.9 17 0.00037 34.9 4.4 32 5-37 2-33 (376)
489 PRK06463 fabG 3-ketoacyl-(acyl 54.9 24 0.00052 31.8 5.2 36 1-37 1-38 (255)
490 cd08301 alcohol_DH_plants Plan 54.9 28 0.00061 33.5 5.9 30 7-37 189-219 (369)
491 cd08284 FDH_like_2 Glutathione 54.7 32 0.00068 32.4 6.2 29 7-36 169-198 (344)
492 PRK12936 3-ketoacyl-(acyl-carr 54.6 14 0.00031 32.7 3.6 30 1-30 1-31 (245)
493 PRK14620 NAD(P)H-dependent gly 54.6 18 0.00039 34.4 4.5 22 8-29 2-23 (326)
494 PRK14189 bifunctional 5,10-met 54.5 46 0.00099 31.5 7.0 28 7-35 159-187 (285)
495 COG0300 DltE Short-chain dehyd 54.5 23 0.00051 33.1 5.0 37 1-38 1-38 (265)
496 PRK06947 glucose-1-dehydrogena 54.5 20 0.00044 32.0 4.6 31 6-37 2-33 (248)
497 PF00107 ADH_zinc_N: Zinc-bind 54.4 5.6 0.00012 31.9 0.8 35 95-129 57-91 (130)
498 cd08295 double_bond_reductase_ 54.4 28 0.00061 32.9 5.8 30 8-38 154-184 (338)
499 PRK08265 short chain dehydroge 54.4 23 0.0005 32.2 5.0 35 1-36 1-36 (261)
500 COG1004 Ugd Predicted UDP-gluc 54.3 15 0.00033 36.3 3.8 29 7-36 1-29 (414)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-107 Score=767.74 Aligned_cols=335 Identities=57% Similarity=0.948 Sum_probs=319.7
Q ss_pred CCceeEEEEccCHHHHHHHHHHHcC----CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee--------cCCcc
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKT 71 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~~----p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~--------~~~~~ 71 (341)
||++||||||||||||.++|++.++ +++|+|+|||+..+.++++|||+|||+||+|+ ++|.. +++ .
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~ 78 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-V 78 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-E
Confidence 3668999999999999999998864 68999999997689999999999999999999 89987 566 8
Q ss_pred eEECCEEEEEE-ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-C
Q 019445 72 LLFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-E 148 (341)
Q Consensus 72 l~i~g~~i~v~-~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~ 148 (341)
|.+||+.|.++ +++||++++|++.++|+|+||||.|.+++.+..|+++|+|+|+||||+.| .+++|||+|++.|++ .
T Consensus 79 l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~ 158 (361)
T PTZ00434 79 LVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTE 158 (361)
T ss_pred EEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCccc
Confidence 99999999986 89999999999999999999999999999999999999999999999887 689999999999986 4
Q ss_pred CcEEeCCCCccceecchhHHH-hhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhh
Q 019445 149 LDIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 227 (341)
Q Consensus 149 ~~iIsnp~C~tt~Lapllk~L-~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lp 227 (341)
++||||+|||||||+|++|+| |++|||++++|||+|+||++|+++|++++++||++|++++||||++||+++++.+++|
T Consensus 159 ~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP 238 (361)
T PTZ00434 159 HHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 238 (361)
T ss_pred CcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecc
Confidence 789999999999999999999 7999999999999999999999999997789999999999999999999999999999
Q ss_pred hhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcce
Q 019445 228 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307 (341)
Q Consensus 228 el~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~ 307 (341)
||+|||+++++|||+++|+++|+++++++++++|||+++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|++
T Consensus 239 ~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v 318 (361)
T PTZ00434 239 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQ 318 (361)
T ss_pred ccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec----CCeEEEEEEeCCCcchhhhHHHHHHHHhhcc
Q 019445 308 LS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 308 ~~----~~~~k~~~wydne~gy~~r~~d~~~~~~~~~ 340 (341)
++ ++++|+++||||||||||||+||+.||.+.+
T Consensus 319 ~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 319 NNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred eccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 86 4899999999999999999999999998754
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=8.9e-102 Score=732.09 Aligned_cols=329 Identities=66% Similarity=1.060 Sum_probs=318.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++||||||||||||.++|++++++++|+|+|||. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence 4799999999999999999988889999999996 89999999999999999999 89988887 899999999999999
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP 164 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap 164 (341)
+|++++|++.++|+||||||.|.+++++++|+++|||+|++|+|+.+ .|++|||+|++.|+ ..+|||||||+||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~-~~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcC-CCCEEECCCcHHHHHHH
Confidence 99999998889999999999999999999999999999999999775 79999999999997 47899999999999999
Q ss_pred hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445 165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244 (341)
Q Consensus 165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~ 244 (341)
++|+||++|||++++|||+|++|++|.++|+++++++|++|++++|++|+++|+++++++++|+|+||++++++|||+++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999999778999999999999999999999999999999999999999999999
Q ss_pred EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG 324 (341)
Q Consensus 245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g 324 (341)
||+.+++++++++++.||++++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++|||||||
T Consensus 238 gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~g 317 (331)
T PRK15425 238 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETG 317 (331)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhh
Q 019445 325 YSSRVIDLIVHMAK 338 (341)
Q Consensus 325 y~~r~~d~~~~~~~ 338 (341)
|||||+|++.||++
T Consensus 318 ys~r~~d~~~~~~~ 331 (331)
T PRK15425 318 YSNKVLDLIAHISK 331 (331)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
No 3
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-101 Score=732.37 Aligned_cols=332 Identities=67% Similarity=1.081 Sum_probs=320.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++||||||||||||.++|++++++++|+|+|||+..+.++++|||+|||+||+|+ +++..+++ .|.+||+.|++++++
T Consensus 2 ~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 2 VVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFEK 79 (337)
T ss_pred ceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeCC
Confidence 4799999999999999999988889999999997689999999999999999999 99988887 899999999999999
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP 164 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap 164 (341)
+|+++||++.++|+||||||.+.++++++.|+++|||+|++|+|..+ .|++|||+|++.|++..+|||||||+|+||+|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 99999999999999999999999999999999999999999998775 79999999999998667899999999999999
Q ss_pred hhHHHhhhcceeEEEEEEEeeccCcceeeeCCC--CCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445 165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (341)
Q Consensus 165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s--~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~ 242 (341)
++|+||++|||++++|||+|++|.+|.++|+++ .+++|++|++++|+||+.+|+++++.+++|||++|++++++|||+
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt 239 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV 239 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence 999999999999999999999999999999986 378999999999999999999999999999999999999999999
Q ss_pred eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE 322 (341)
Q Consensus 243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne 322 (341)
++||+.+++++++++++.|||+++|+++++++|+|||+|+++|+||+||+|++||+|||+.+|.+++++++|+++|||||
T Consensus 240 ~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE 319 (337)
T PTZ00023 240 PDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNE 319 (337)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHhhc
Q 019445 323 WGYSSRVIDLIVHMAKT 339 (341)
Q Consensus 323 ~gy~~r~~d~~~~~~~~ 339 (341)
|||||||+|++.||.++
T Consensus 320 ~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 320 WGYSNRLLDLAHYITQK 336 (337)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 99999999999999765
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=8.6e-102 Score=747.85 Aligned_cols=331 Identities=49% Similarity=0.818 Sum_probs=316.7
Q ss_pred CceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee-cCCcceEECCEEEEE
Q 019445 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAV 81 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~-~~~~~l~i~g~~i~v 81 (341)
|++||||||||||||.++|++.++ +++|||+|||. .+.++++|||+|||+||+|+ ++|+. +++ .|.++|+.|.+
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V 150 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKV 150 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEE
Confidence 458999999999999999998755 68999999996 79999999999999999999 89976 555 89999999999
Q ss_pred EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCC-CcEEeCCCCc
Q 019445 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCT 158 (341)
Q Consensus 82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~-~~iIsnp~C~ 158 (341)
+++++|.+++|++.++|+||||||.|.+++++++|+++|+|+|++|+|..| +|++|||||++.|++. .+|||||||+
T Consensus 151 ~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCT 230 (442)
T PLN02237 151 VSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCT 230 (442)
T ss_pred EEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchH
Confidence 998899999998889999999999999999999999999999999999765 6999999999999865 7899999999
Q ss_pred cceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEE
Q 019445 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF 238 (341)
Q Consensus 159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~ 238 (341)
||||+|++|+||++|||++++|||+|++|++|+++|+++ ++||++|++++||||++||+++++.+++|||+|||+++++
T Consensus 231 TNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~ 309 (442)
T PLN02237 231 TNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIAL 309 (442)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEE
Confidence 999999999999999999999999999999999999986 7999999999999999999999999999999999999999
Q ss_pred EeeeeeEeeEEEEEEeCC-CCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEE
Q 019445 239 RVPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVS 317 (341)
Q Consensus 239 rVP~~~g~~~~l~v~l~~-~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~ 317 (341)
|||+++|+++|+++++++ ++++|||+++|++++++++++||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++
T Consensus 310 RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~a 389 (442)
T PLN02237 310 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVA 389 (442)
T ss_pred ecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEE
Confidence 999999999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcchhhhHHHHHHHHhhc
Q 019445 318 WYDNEWGYSSRVIDLIVHMAKT 339 (341)
Q Consensus 318 wydne~gy~~r~~d~~~~~~~~ 339 (341)
||||||||||||+||+.||.++
T Consensus 390 WYDNEwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 390 WYDNEWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred EeCCchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-101 Score=727.88 Aligned_cols=332 Identities=48% Similarity=0.815 Sum_probs=318.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
|+||||||||||||.++|+++++ +++|+|+|||. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~ 77 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS 77 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence 47999999999999999998876 57999999997 78999999999999999999 99988777 8999999999999
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCC-CCcEEeCCCCccc
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTN 160 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt 160 (341)
++||++++|++.++|+||||||.|.++++++.|+++|||+|++|+|..| .|++|||+|++.|++ ..+|||||||+||
T Consensus 78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence 8999999999889999999999999999999999999999999998654 599999999999974 3689999999999
Q ss_pred eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240 (341)
Q Consensus 161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV 240 (341)
||+|++|+||++|||++++|||+|++|++|+++|+++ +++|++|++++||||++||+++++.+++|+|+||++++++||
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV 236 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV 236 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320 (341)
Q Consensus 241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd 320 (341)
|+++||++++++++++++++|||+++|+++++++|++||+|+++|+||+||+|++||+|||+.+|.+++++++|+++|||
T Consensus 237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyD 316 (337)
T PRK07403 237 PTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYD 316 (337)
T ss_pred ccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHhhccC
Q 019445 321 NEWGYSSRVIDLIVHMAKTQA 341 (341)
Q Consensus 321 ne~gy~~r~~d~~~~~~~~~~ 341 (341)
|||||||||+||+.||.++.|
T Consensus 317 NE~Gys~r~~dl~~~~~~~~~ 337 (337)
T PRK07403 317 NEWGYSQRVVDLAELVARKWK 337 (337)
T ss_pred CchhHHHHHHHHHHHHHhhcC
Confidence 999999999999999987543
No 6
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.9e-100 Score=721.09 Aligned_cols=331 Identities=48% Similarity=0.830 Sum_probs=317.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++||||||||||||.++|++++++++|+|+|||. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.+++++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcC
Confidence 4799999999999999999888889999999997 79999999999999999999 89988877 899999999999999
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCccceec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLA 163 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La 163 (341)
+|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|..| ++++|||+|++.|++ ..+|||||||+||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999998889999999999999999999999999999999999665 567899999999985 3689999999999999
Q ss_pred chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243 (341)
Q Consensus 164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~ 243 (341)
|++|+||++|||++++|||+|++|++|+++|+++ +++|++|++++|++|++||+++++.+++|+|+||++++++|||++
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~ 237 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence 9999999999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW 323 (341)
Q Consensus 244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~ 323 (341)
+||++++++++++++++|||+++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|.+++++|+|+++||||||
T Consensus 238 ~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~ 317 (343)
T PRK07729 238 NVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW 317 (343)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHhhcc
Q 019445 324 GYSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 324 gy~~r~~d~~~~~~~~~ 340 (341)
||||||+||+.||.+++
T Consensus 318 Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 318 GYSCRVVDLVTLVADEL 334 (343)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998753
No 7
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.2e-99 Score=718.01 Aligned_cols=336 Identities=91% Similarity=1.370 Sum_probs=322.6
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCc-eeeecCCcceEECCEEE
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPV 79 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~-~v~~~~~~~l~i~g~~i 79 (341)
|++. ++||||||||||||.++|.+.++|++||++|+|+..+.++++|||+|||+||+|+ + +++.++++.|.++|+.+
T Consensus 1 ~~~~-~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i 78 (338)
T PLN02358 1 MADK-KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPV 78 (338)
T ss_pred CCCC-ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEE
Confidence 7775 5899999999999999999998999999999997789999999999999999998 6 88875554799999999
Q ss_pred EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCcc
Q 019445 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT 159 (341)
Q Consensus 80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~t 159 (341)
.++++.+|++++|++.++|+||||||.|.++++++.|+++|+|+|++|+|+.|.|++|||+|++.|++..+|||||||||
T Consensus 79 ~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTT 158 (338)
T PLN02358 79 TVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTT 158 (338)
T ss_pred EEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchH
Confidence 99999999999998889999999999999999999999999999999999888899999999999986678999999999
Q ss_pred ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEE
Q 019445 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239 (341)
Q Consensus 160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~r 239 (341)
|||+|++|+||++|||+++.|||+|++|++|.++|+++.+++|++|++++|+||+++|+++++++++|+|++|++++++|
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avR 238 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 238 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEE
Confidence 99999999999999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEe
Q 019445 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 319 (341)
Q Consensus 240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wy 319 (341)
||+++||+.++++++++++++||++++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++||
T Consensus 239 VPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~Wy 318 (338)
T PLN02358 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWY 318 (338)
T ss_pred eeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhHHHHHHHHhh
Q 019445 320 DNEWGYSSRVIDLIVHMAK 338 (341)
Q Consensus 320 dne~gy~~r~~d~~~~~~~ 338 (341)
||||||||||+||+.||.+
T Consensus 319 DNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 319 DNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 9999999999999999864
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=5.7e-99 Score=727.62 Aligned_cols=333 Identities=77% Similarity=1.183 Sum_probs=320.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee-cCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~-~~~~~l~i~g~~i~v~~~ 84 (341)
|+||||||||||||.++|.+.+++++++++|||++.+.++++|||+|||+||+|+ ++|+. +++ .|.++|+.+.++++
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~ 162 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSK 162 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEec
Confidence 3799999999999999999887778999999998789999999999999999999 99986 666 89999999999999
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP 164 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap 164 (341)
++|++++|++.++|+||||||.|.++++++.|+++|+|+|+||+|++|.|++|||||++.|++..+|||||||+||||+|
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap 242 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 242 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence 99999999888999999999999999999999999999999999988889999999999998667899999999999999
Q ss_pred hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445 165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244 (341)
Q Consensus 165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~ 244 (341)
++|+||++|||++++|||+|++|++|.++|++++++++++|++++|+||+.+|+++++.+++|+|+||++++++|||+++
T Consensus 243 ~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~ 322 (421)
T PLN02272 243 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 322 (421)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCc
Confidence 99999999999999999999999999999999778999999999999999999999999999999999999999999999
Q ss_pred EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG 324 (341)
Q Consensus 245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g 324 (341)
||+++++++++++++.|||+++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||||||
T Consensus 323 gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwG 402 (421)
T PLN02272 323 VSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWG 402 (421)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcc
Q 019445 325 YSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 325 y~~r~~d~~~~~~~~~ 340 (341)
|||||+|++.||.+.+
T Consensus 403 ys~R~~dl~~~~~~~~ 418 (421)
T PLN02272 403 YSNRVLDLIEHMALVA 418 (421)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999997653
No 9
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.7e-99 Score=725.76 Aligned_cols=333 Identities=47% Similarity=0.780 Sum_probs=318.2
Q ss_pred CceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
|++||||||||||||.++|+|.++ |.+||++|||. .+.++++|||+|||+||+|+ ++++..+++.|.++|+.|.++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~ 136 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVV 136 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEE
Confidence 458999999999999999999876 78999999997 78999999999999999999 898764443899999999999
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccce
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC 161 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~ 161 (341)
+++||++++|++.++|+||||||.|.+++++++|+++|||+|++|+|..+ +|++|||+|++.|++..+|||||||||||
T Consensus 137 ~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~ 216 (395)
T PLN03096 137 SDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNC 216 (395)
T ss_pred EcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHH
Confidence 99999999998889999999999999999999999999999999999765 79999999999998667899999999999
Q ss_pred ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (341)
Q Consensus 162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP 241 (341)
|+|++|+||++|||++++|||+|++|++|.++|+++ +++|++|++++|+||+++|+++++.+++|+|+||++++++|||
T Consensus 217 LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVP 295 (395)
T PLN03096 217 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVP 295 (395)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEcc
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCC
Q 019445 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDN 321 (341)
Q Consensus 242 ~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydn 321 (341)
+++||++++++++++++++|||+++|+++++++|++||+|+++|+||+||+|++||+|||+.+|.+++++++|+++||||
T Consensus 296 v~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDN 375 (395)
T PLN03096 296 TPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN 375 (395)
T ss_pred ccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHhhcc
Q 019445 322 EWGYSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 322 e~gy~~r~~d~~~~~~~~~ 340 (341)
||||||||+|++.||+++.
T Consensus 376 E~Gys~r~~dl~~~~~~~~ 394 (395)
T PLN03096 376 EWGYSQRVVDLADIVANKW 394 (395)
T ss_pred chhHHHHHHHHHHHHHhhc
Confidence 9999999999999998754
No 10
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.3e-97 Score=700.21 Aligned_cols=332 Identities=29% Similarity=0.541 Sum_probs=313.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECC-EEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g-~~i~v~~~ 84 (341)
++||||||||||||.++|++++++++|+|+|||+..+.++++|||+|||+||+|+..+++.+++ .|.+|| +.|.++++
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAK 80 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEec
Confidence 3799999999999999999888889999999997689999999999999999995158888777 899998 89999999
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP 164 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap 164 (341)
++|++++|++.++|+||||||.|.+.+.+..|+++|+|+|++|+|+.|.|++|||+|++.|++..+||||||||||||+|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999988999999999999999999999999999999999998899999999999998667899999999999999
Q ss_pred hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCC--CCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445 165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (341)
Q Consensus 165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~--~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~ 242 (341)
++|+||++|||++++|||+|+|+ .|...|++++ +++|++|.+++||+|+.+|+++++.+++|+|+||++++++|||+
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt 239 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV 239 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence 99999999999999999999996 6776777653 79999999999999999999999999999999999999999999
Q ss_pred eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCccee-cCCeEEEEEEeCC
Q 019445 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL-SKNFVKLVSWYDN 321 (341)
Q Consensus 243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~-~~~~~k~~~wydn 321 (341)
++||++++++++++++++|||+++|+++++++|+|||+|+|+|+||+||+|++ |+|||+.+|+++ +++++|+++||||
T Consensus 240 ~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDN 318 (342)
T PTZ00353 240 KKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDV 318 (342)
T ss_pred cCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999 599999999995 8899999999999
Q ss_pred CcchhhhHHHHHHHHhhcc
Q 019445 322 EWGYSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 322 e~gy~~r~~d~~~~~~~~~ 340 (341)
||||||||+|++.||.+..
T Consensus 319 E~Gys~r~~dl~~~~~~~~ 337 (342)
T PTZ00353 319 ECYYAARLLSLVKQLHQIH 337 (342)
T ss_pred chHHHHHHHHHHHHHHhcc
Confidence 9999999999999998754
No 11
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-97 Score=700.60 Aligned_cols=329 Identities=36% Similarity=0.686 Sum_probs=315.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC---CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 6 KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~---p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
|+||||||||+|||+++|+|+++ +++++++|||. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~ 77 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLL 77 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEE
Confidence 36999999999999999999874 57999999997 79999999999999999999 99988777 899999999999
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-C-CCeeeeccCccccCCCCcEEeCCCCccc
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTN 160 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt 160 (341)
++++|++++|+..++|+||||||.+.++++++.|+++|+|+|++|+|++ | .+++|||+|++.|++..+||||||||||
T Consensus 78 ~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn 157 (336)
T PRK13535 78 HERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTN 157 (336)
T ss_pred EcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHH
Confidence 9999999999888999999999999999999999999999999999986 5 4589999999999866789999999999
Q ss_pred eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240 (341)
Q Consensus 161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV 240 (341)
||+|++|+||++|||++++|||+||+|++|+++|+++ +++|++|.+++|+||+.++.++++.+++|+|++|++++++||
T Consensus 158 ~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRV 236 (336)
T PRK13535 158 CIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRV 236 (336)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEe
Confidence 9999999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320 (341)
Q Consensus 241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd 320 (341)
|+++||+.+++++++++++.||++++|+++++++|+|||+|+++|+||+||+|++||+|||+.+|.+++++|+|+++|||
T Consensus 237 Pv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyD 316 (336)
T PRK13535 237 PTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCD 316 (336)
T ss_pred CccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHhh
Q 019445 321 NEWGYSSRVIDLIVHMAK 338 (341)
Q Consensus 321 ne~gy~~r~~d~~~~~~~ 338 (341)
|||||||||+|++.||.+
T Consensus 317 NE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 317 NEWGFANRMLDTTLAMAA 334 (336)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 999999999999999964
No 12
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.6e-97 Score=700.83 Aligned_cols=329 Identities=42% Similarity=0.762 Sum_probs=315.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++||||+|||||||.++|.+.++++++|++++++..+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEecC
Confidence 4799999999999999999999999999999997789999999999999999999 89987776 899999999999999
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCC-CcEEeCCCCcccee
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCTTNCL 162 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~-~~iIsnp~C~tt~L 162 (341)
+|++++|+ ++|+||||||.+.++++++.|+++|||+|++|+|..| .|++|||+|++.|++. .+|||||||+||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999996 9999999999999999999999999999999999654 6999999999999863 68999999999999
Q ss_pred cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (341)
Q Consensus 163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~ 242 (341)
+|++|+||++|||++++|||+|++|++|.++|+++ +++|++|++++|+||+.+|+++++.+++|+|+||++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999987 58899999999999999999999999999999999999999999
Q ss_pred eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE 322 (341)
Q Consensus 243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne 322 (341)
++||+.+++++++++++.|||+++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|.+++|+++|+++|||||
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNE 316 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHhhc
Q 019445 323 WGYSSRVIDLIVHMAKT 339 (341)
Q Consensus 323 ~gy~~r~~d~~~~~~~~ 339 (341)
|||||||+||+.||.+-
T Consensus 317 ~gys~r~~dl~~~~~~~ 333 (334)
T PRK08955 317 WGYANRTAELARKVGLA 333 (334)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999999753
No 13
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-96 Score=681.51 Aligned_cols=332 Identities=62% Similarity=0.964 Sum_probs=319.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||||||||||||.++|++.+++ ++|+|+||+. .+++++||||+|||+||+|. +++..+++ .+.++|+.|+++.+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence 479999999999999999999998 7999999998 89999999999999999999 88877676 89999999999999
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC-CCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL 162 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~-G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L 162 (341)
++|+.++|.+.++|+|+||||.|.+++.+++|+++ |+|+|++|||+.+ ++++|||+|++.+++++++|||+|||||||
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL 157 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL 157 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence 99999999999999999999999999999999988 5999999999987 999999999999988899999999999999
Q ss_pred cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (341)
Q Consensus 163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~ 242 (341)
+|++|+|+++|||++++|||+|++|++|.++|||| ++||++|++++|+||++||+++++.+++|||+|||+++++|||+
T Consensus 158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 99999999999999999999999999999999997 58999999999999999999999999999999999999999999
Q ss_pred eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE 322 (341)
Q Consensus 243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne 322 (341)
+++|++++++++++++++|||+++|+++++.+|+++++|+|+|+||+||+|++||+|||+.+|.+.+++|+|+++|||||
T Consensus 237 ~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE 316 (335)
T COG0057 237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNE 316 (335)
T ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cchhhhHHHHHHHHhhccC
Q 019445 323 WGYSSRVIDLIVHMAKTQA 341 (341)
Q Consensus 323 ~gy~~r~~d~~~~~~~~~~ 341 (341)
|||++|++|+..++....+
T Consensus 317 ~gys~r~vD~~~~~~~~~~ 335 (335)
T COG0057 317 WGYSNRVVDLLAMVAKALK 335 (335)
T ss_pred ccchHHHHHHHHHHhhhcC
Confidence 9999999999888776543
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1.2e-94 Score=684.61 Aligned_cols=321 Identities=59% Similarity=0.976 Sum_probs=306.6
Q ss_pred eEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE-EEEEEec
Q 019445 8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF 84 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~-~i~v~~~ 84 (341)
||||||||||||.++|+++++ +++|+|+|||. .+.++++|||+|||+||+|+ ++++.++++.|.++|+ .+.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998877 57999999997 89999999999999999999 8998766524999999 9999999
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La 163 (341)
++|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|+.| +|++|||+|++.|+++.+|||||||+||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999998889999999999999999999999999999999999767 7999999999999866789999999999999
Q ss_pred chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243 (341)
Q Consensus 164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~ 243 (341)
|++|+||++|||+++.|||+|++|++|.++|+++ ++++++|++++|++|+.+|+++++.+++|+|++|++++++|||++
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999986 688999999999999999999999999999999999999999999
Q ss_pred eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceec--CCeEEEEEEeCC
Q 019445 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS--KNFVKLVSWYDN 321 (341)
Q Consensus 244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~--~~~~k~~~wydn 321 (341)
+||+.++++++++++++|||+++|+++++++|++|++|+|+|+||+||+|++||+|||+.+|.+++ ++++|+++||||
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDN 317 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDN 317 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999954 899999999999
Q ss_pred CcchhhhHHH
Q 019445 322 EWGYSSRVID 331 (341)
Q Consensus 322 e~gy~~r~~d 331 (341)
||||||||+|
T Consensus 318 E~gys~r~~d 327 (327)
T TIGR01534 318 EWGYSNRVVD 327 (327)
T ss_pred CceeeeEccC
Confidence 9999999986
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.9e-94 Score=695.60 Aligned_cols=331 Identities=39% Similarity=0.623 Sum_probs=314.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC----CCcEEEEeeCC---CCChhhhhhhcccccccCcccCceeeec--CCcceEECC
Q 019445 6 KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDP---FISTDYMTYMFKYDSVHGQWKHNELKVK--DEKTLLFGE 76 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~----p~~elv~i~~~---~~~~~~~a~ll~~ds~~g~~~~~~v~~~--~~~~l~i~g 76 (341)
+.||||||||||||.++|++.++ ++++|++||.+ ..+.++++|||+|||+||+|+ +++..+ ++ .|.+||
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liing 204 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIANG 204 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEECC
Confidence 56999999999999999999876 57999999631 267899999999999999999 899876 45 899999
Q ss_pred EEEEEEecCCCCCCCccCCCcc--EEEecCCCccCHHHHHHHHh-CCCcEEEecCCCCC-CCeeeeccCccccCCCCcEE
Q 019445 77 KPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIV 152 (341)
Q Consensus 77 ~~i~v~~~~~~~~~~w~~~~~D--vV~~at~~~~s~~~~~~~l~-~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iI 152 (341)
+.|.++++.+|+++||++.|+| +|+||||.|.+.+.+.+|++ +|+|+|+||||+.+ +|++|||+|++.|+++.+||
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II 284 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV 284 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence 9999999999999999999999 99999999999999999999 89999999999886 89999999999998667899
Q ss_pred eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCc
Q 019445 153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232 (341)
Q Consensus 153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~ 232 (341)
||||||||||+|++|+||++|||+++.|||+|++|++|.++|+++ +++|+||++++|++|+.||+++++.+++|+|+||
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GK 363 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGK 363 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCc
Confidence 999999999999999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred eeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCc-ceeecccCCCcceeEEeCCCcceecC
Q 019445 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEE-DVVSTDFVGDSRSSIFDAKAGIALSK 310 (341)
Q Consensus 233 l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~-~~vs~d~~~~~~s~~~d~~~~~~~~~ 310 (341)
++++++|||+++||+++++++++++++.|||+++|+++++ ++|+++++|+++ |+||+||+|++||+|||+.+|+++ |
T Consensus 364 ltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g 442 (477)
T PRK08289 364 LTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-G 442 (477)
T ss_pred EEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-C
Confidence 9999999999999999999999999999999999999995 899999999999 799999999999999999999998 8
Q ss_pred CeEEEEEEeCCCcchhhhHHHHHHHHhhcc
Q 019445 311 NFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340 (341)
Q Consensus 311 ~~~k~~~wydne~gy~~r~~d~~~~~~~~~ 340 (341)
+++|+++||||||||||||+|++.||++..
T Consensus 443 ~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 443 NRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998753
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.2e-92 Score=672.49 Aligned_cols=320 Identities=38% Similarity=0.712 Sum_probs=306.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCC---CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 8 KIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p---~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
||||||||+|||.++|+|.+++ ++++++||+. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence 6999999999999999998764 6999999996 78899999999999999999 89988777 89999999999999
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-C-CCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCL 162 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L 162 (341)
++|++++|++.++|+||||||.+.+++++++|+++|+++|++|+|++ | .+++|||+|++.|++..+|||||||+||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999888999999999999999999999999999999999977 4 458999999999986678999999999999
Q ss_pred cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445 163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242 (341)
Q Consensus 163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~ 242 (341)
+|++|+||++|||+++.|||+|++|++|.++|+++ +++|++|.+++|+||+.+++++++++++|+|++|++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv 236 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT 236 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence 99999999999999999999999999999999986 69999999999999999999999999999999999999999999
Q ss_pred eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE 322 (341)
Q Consensus 243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne 322 (341)
++||+.++++++++++++||++++|+++++++|++||+|+++|+||+||+|++||+|||+.+|++++++++|+++|||||
T Consensus 237 ~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE 316 (325)
T TIGR01532 237 VNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNE 316 (325)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHH
Q 019445 323 WGYSSRVID 331 (341)
Q Consensus 323 ~gy~~r~~d 331 (341)
|||||||+|
T Consensus 317 ~gys~r~~d 325 (325)
T TIGR01532 317 WGFANRMLD 325 (325)
T ss_pred ceeeeEccC
Confidence 999999986
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-75 Score=523.67 Aligned_cols=285 Identities=66% Similarity=1.075 Sum_probs=271.3
Q ss_pred HHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCCCCCccCCC
Q 019445 17 IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTG 96 (341)
Q Consensus 17 iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~~~~w~~~~ 96 (341)
|||.++ + ..+++++++||++.++++++|+++|||+||+|+ ++++.++. ++.++|+.+.++++++|..++|...+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 355555 1 445999999999999999999999999999999 99998887 78888999999999999999999999
Q ss_pred ccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecchhHHHhhhccee
Q 019445 97 AEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176 (341)
Q Consensus 97 ~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~ 176 (341)
+|+|+++|+.|.+.+.+..|+++|+|++++|||+.|.|+||+|||+++|.++..+|||++|+|+||+|++|+||++|||.
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCC
Q 019445 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEK 256 (341)
Q Consensus 177 ~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~ 256 (341)
+++|||+|+++++|+.+||||+++||.||.+.|||+|.+||++++++|++|||+||++++++|||++ ++.+++++++++
T Consensus 155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k 233 (285)
T KOG0657|consen 155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEK 233 (285)
T ss_pred cccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcchhhhHHHHHHHH
Q 019445 257 EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336 (341)
Q Consensus 257 ~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gy~~r~~d~~~~~ 336 (341)
+.++|+|+++++++++.|++||| +|+ +| ++|||||||||+|++||+.||
T Consensus 234 ~a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~ 282 (285)
T KOG0657|consen 234 PAKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHM 282 (285)
T ss_pred ccchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHH
Confidence 99999999999999999999999 777 45 899999999999999999999
Q ss_pred hhc
Q 019445 337 AKT 339 (341)
Q Consensus 337 ~~~ 339 (341)
+++
T Consensus 283 ask 285 (285)
T KOG0657|consen 283 ASK 285 (285)
T ss_pred hcC
Confidence 874
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=7.1e-46 Score=351.81 Aligned_cols=234 Identities=24% Similarity=0.320 Sum_probs=202.7
Q ss_pred EEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChh---hhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~---~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
|||||||+||+.++|.+.++|++||++|+|. +.+ +++++++||+.|+.+. ..+..+++ .+.++|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g--------- 67 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAG--------- 67 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecC---------
Confidence 6999999999999999998899999999995 444 7888889999984332 34444443 444433
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA 163 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La 163 (341)
+++++. .++|+|++|||.+.+++.++.|++.|+|+|++|+|+.| .++||||+|++.+. ..++|||+|||||||+
T Consensus 68 ~~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~-~~~~vs~aSCtTn~La 143 (333)
T TIGR01546 68 TLEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL-GKDYVRVVSCNTTGLV 143 (333)
T ss_pred CHHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC-cCceEEecCchHhhHH
Confidence 344442 37999999999999999999999999999999999887 47899999999987 3459999999999999
Q ss_pred chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc-cC---ChhHHHHHHhhhhcCceeEEEEE
Q 019445 164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMSFR 239 (341)
Q Consensus 164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~-~~---g~~~~~~~~lpel~~~l~~~~~r 239 (341)
|++++|+++|||+++.|||+|+ |++|+ ++|+|| ++||+|+ .+ +.++++.+++|+|+ ++++++|
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 9999999999999999999997 88874 677888 5899999 34 55899999999999 9999999
Q ss_pred eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (341)
Q Consensus 240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~ 272 (341)
||++++|+.+++++++++++.+||+++|+++++
T Consensus 211 VPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 211 VPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred eCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 999999999999999999999999999999765
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=1.1e-44 Score=311.28 Aligned_cols=157 Identities=64% Similarity=0.996 Sum_probs=152.3
Q ss_pred ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241 (341)
Q Consensus 162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP 241 (341)
|+|++|+|+++|||++++|||+|++|++|+++|+++ +++|+||.+++|++|..+|+++++.+++|||+++++++++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 689999999999999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEe
Q 019445 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 319 (341)
Q Consensus 242 ~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wy 319 (341)
+++||++++++++++++++|||+++|+++++++++++++|+|+|+||+||+|++||++||..++++++|+++|+++||
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 20
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.4e-41 Score=320.59 Aligned_cols=239 Identities=21% Similarity=0.310 Sum_probs=196.6
Q ss_pred eeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
+||+|+|+ ||+|++|+|+|.+ ||.+|++++.+....++ .+.+++..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--------------------------~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--------------------------ELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--------------------------eeeeCCceeEEe-
Confidence 59999999 9999999999998 79899999976522221 122223333333
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCC--CcEEeCCCCc
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPE--LDIVSNASCT 158 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~--~~iIsnp~C~ 158 (341)
+++..+|. ++|+||+|+|++.+++++++++++|+++||+|++++ +.|..+||+|++.++.. .++|||||||
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 34444563 899999999999999999999999999899998876 37899999999999742 3799999999
Q ss_pred cceecchhHHHhhhcceeEEEEEEEeeccC------------cceeeeCCC--CCCccccccccccccccc-----CChh
Q 019445 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITA------------TQKTVDGPS--MKDWRGGRAASFNIIPSS-----TGAA 219 (341)
Q Consensus 159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~------------~~~~~d~~s--~~~~~~gr~~~~niiP~~-----~g~~ 219 (341)
|||++|.+++|+++|+|+.+.++|+|++|| ++..+|+++ .++.+++|++++|++|+. +|.+
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~ 210 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT 210 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence 999999999999999999999999999997 345566442 357889999999999997 6666
Q ss_pred HH-------HHHHh--hhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445 220 KA-------VGKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 281 (341)
Q Consensus 220 ~~-------~~~~l--pel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~ 281 (341)
+| +.+++ |++ +++++++|||++|||+.++|++++++++.+|++++|++ .||++++..
T Consensus 211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~---~~~v~~~~~ 276 (334)
T PRK14874 211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAE---APGVVLVDD 276 (334)
T ss_pred HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHc---CCCCEEEeC
Confidence 66 34444 555 38999999999999999999999999999999999987 578888864
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-40 Score=318.09 Aligned_cols=261 Identities=27% Similarity=0.340 Sum_probs=201.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
|+||||+|+|+||+.++|++.++|++||+++++. +.++.+|++++. ..|+.++ ..+.. +++..+.+..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~-~~~~~-------~~~~~i~V~~ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADP-EREKA-------FEEAGIPVAG 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCc-ccccc-------ccCCceEEcC
Confidence 4799999999999999999999999999999986 356777776631 1455544 22210 1122233321
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC-CCCC--eeeeccCccccCCCCcEEeCCCCccc
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAP--MFVVGVNEKEYKPELDIVSNASCTTN 160 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~-~d~~--~~V~Gvn~~~~~~~~~iIsnp~C~tt 160 (341)
+++++ ..++|+||+|||.+.+.+.++.++++| ++|+++++. ++.| .+|||+|++.+.. .++|+||||+||
T Consensus 71 --~~~el---~~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~ 143 (341)
T PRK04207 71 --TIEDL---LEKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTT 143 (341)
T ss_pred --ChhHh---hccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHH
Confidence 23333 137999999999999999999999999 557777775 3433 4899999998873 458999999999
Q ss_pred eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccccccccccc----CChhHHHHHHhhhhcCceeEE
Q 019445 161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM 236 (341)
Q Consensus 161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~----~g~~~~~~~~lpel~~~l~~~ 236 (341)
||+|++++|+++|||+++.+||+|++|+ + .++ .|++..|++|+. +...+++.+++|+|+ ++++
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~ 210 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM 210 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence 9999999999999999999999999883 2 133 277888998752 233478999999998 9999
Q ss_pred EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC----cccccccCCCcceeecccCCCcce
Q 019445 237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKGILGYTEEDVVSTDFVGDSRS 297 (341)
Q Consensus 237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~----~~~~il~~~~~~~vs~d~~~~~~s 297 (341)
|+|||+++||+.+++++++++++.||++++|+++++- .-.++.+ +++++-..+-.|.|+.
T Consensus 211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~~ 274 (341)
T PRK04207 211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPRG 274 (341)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCcc
Confidence 9999999999999999999999999999999998752 2235555 6666655555666654
No 22
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=4.4e-39 Score=309.11 Aligned_cols=240 Identities=21% Similarity=0.280 Sum_probs=195.6
Q ss_pred eEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 8 KIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
||+|+|+ ||+|++|+|+|.+ ||.++++.+.+....++ .+.+.+..+. +.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--------------------------~~~~~~~~~~-~~~ 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--------------------------KVTFKGKELE-VNE 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--------------------------eeeeCCeeEE-EEe
Confidence 6899999 9999999999998 79899888866522221 1222222222 222
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--CCcEEeCCCCcc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--ELDIVSNASCTT 159 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~~~iIsnp~C~t 159 (341)
.++ ..| .++|+||+|+|++.+++++++++++|+++||+|++++ +.|.++||+|++.+++ ..++||||||||
T Consensus 54 ~~~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 54 AKI--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred CCh--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 222 223 4899999999999999999999999998888888765 4799999999998874 234999999999
Q ss_pred ceecchhHHHhhhcceeEEEEEEEeeccCcc------------eeeeCCCCCC-------ccccccccccccccc-----
Q 019445 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQ------------KTVDGPSMKD-------WRGGRAASFNIIPSS----- 215 (341)
Q Consensus 160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~------------~~~d~~s~~~-------~~~gr~~~~niiP~~----- 215 (341)
||++|.+++|+++|+|+++.++|+|++||.+ .+.+++.... .+++|++++|+||+.
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 9999999999999999999999999999963 3455543222 678999999999995
Q ss_pred CChhHHHHHHhhhhc---C----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445 216 TGAAKAVGKVLPALN---G----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 281 (341)
Q Consensus 216 ~g~~~~~~~~lpel~---~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~ 281 (341)
++.++|+.|+.+|++ + +++++++|||++|||+.++|++++++++.+|++++|++ .||++++.-
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~---~~~v~v~~~ 279 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKN---APGVVLIDD 279 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhc---CCCCEEeCC
Confidence 578889899999987 2 58999999999999999999999999999999999984 488888754
No 23
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=7.8e-40 Score=278.55 Aligned_cols=149 Identities=56% Similarity=0.988 Sum_probs=139.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
+||||||||||||.++|+++.+|++||++|||...+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999669999999999999999999 89988888 8999999999999999
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCC
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC 157 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C 157 (341)
|+++||+..++|+|+||||.|.+++.++.|+++|+|+|++|+|++| +|++|||+|++.|+++.++|||+||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999986 8999999999999976699999999
No 24
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-40 Score=306.26 Aligned_cols=273 Identities=21% Similarity=0.219 Sum_probs=196.0
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||+|+|+ ||+|.||+|+|.+||++|+..+.++...++.+ ...|+++. +.+ .+ -++.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~~------~l--------~~~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GLV------DL--------PFQT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-ccc------cc--------cccc
Confidence 689999999 99999999999999999988887763333322 34566655 211 01 1222
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC------------------C-CCeeeeccC---c
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK------------------D-APMFVVGVN---E 142 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~------------------d-~~~~V~Gvn---~ 142 (341)
.+++++. ..++|+||+||||++|++.++++++.|++++|+|+|++ + ...+|||++ +
T Consensus 61 ~~~~~~~--~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~ 138 (349)
T COG0002 61 IDPEKIE--LDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR 138 (349)
T ss_pred CChhhhh--cccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCH
Confidence 2444431 34699999999999999999999999999999999976 1 248999997 6
Q ss_pred cccCCCCcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccccc---------cccc
Q 019445 143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASF---------NIIP 213 (341)
Q Consensus 143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~---------niiP 213 (341)
++++ ++++|||||||+||....++||-+. +++.. ....++|++|| .+++||++.. |+.|
T Consensus 139 e~i~-~A~lIAnPGCypTa~iLal~PL~~~-----~ll~~-----~~~~ivdakSG-~SGaGrk~s~~~~~~e~~~~~~~ 206 (349)
T COG0002 139 EKIR-GAKLIANPGCYPTAAILALAPLVKA-----GLLDP-----DSPPIVDAKSG-VSGAGRKASVKNHFPEVNDSLRP 206 (349)
T ss_pred HHHh-cCCEeeCCCchHHHHHHHHHHHHHc-----CCcCC-----CCceEEEEeEe-cCcCCCCccccccchhhcccccc
Confidence 7787 7999999999999944444444322 33211 01236788887 8888988744 4455
Q ss_pred ccCChhHHHHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCC
Q 019445 214 SSTGAAKAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYT 282 (341)
Q Consensus 214 ~~~g~~~~~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~ 282 (341)
|... -|||.||+.+ .+.++++.+|+.||+++++++.+++.++.+||+++|+++|+ +||++|....
T Consensus 207 Y~~~----~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~ 282 (349)
T COG0002 207 YGLT----GHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEG 282 (349)
T ss_pred cccc----ccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCC
Confidence 5432 2777777665 25689999999999999999999999999999999999999 6999998743
Q ss_pred CcceeecccCCCcceeEEeCCCcceecC--CeEEEEEEeCCCc
Q 019445 283 EEDVVSTDFVGDSRSSIFDAKAGIALSK--NFVKLVSWYDNEW 323 (341)
Q Consensus 283 ~~~~vs~d~~~~~~s~~~d~~~~~~~~~--~~~k~~~wydne~ 323 (341)
.-|-+. +.+|..+--| + ...++ +.+-+++=.||=.
T Consensus 283 ~~P~~k-~V~GsN~cdI---g--f~~d~~~~rvvvvsaIDNL~ 319 (349)
T COG0002 283 GYPDTK-AVAGSNFCDI---G--FAVDERTGRVVVVSAIDNLV 319 (349)
T ss_pred CCCChh-hhcCCcceEE---E--EEEcCCCCEEEEEEEecccc
Confidence 222221 2355443323 3 22332 5778888888853
No 25
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-38 Score=300.68 Aligned_cols=240 Identities=20% Similarity=0.256 Sum_probs=191.9
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV 81 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v 81 (341)
+++||||+|+ |++|++++|+|.+ ||.++|+.+.+.+..++ .+.++++.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------------------~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------------------TLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------------------eEEECCcceEE
Confidence 4679999999 9999999999999 89999999977532222 22233333333
Q ss_pred EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCc---cccCCCCcEEeCC
Q 019445 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNE---KEYKPELDIVSNA 155 (341)
Q Consensus 82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~---~~~~~~~~iIsnp 155 (341)
. ++++++|. ++|+||+|+|++.++++++++.++|+++||+|++++ +.|..++++|+ +.++ +.++|+||
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnP 130 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVA 130 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECC
Confidence 2 44556664 899999999999999999999999999999999987 48999999998 5554 57899999
Q ss_pred CCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccCC---hhH
Q 019445 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSSTG---AAK 220 (341)
Q Consensus 156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~g---~~~ 220 (341)
||+||+++..|+||+++++|++..+++++++||.++ +++|.+.....+.++.++|++||..+ ...
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~ 210 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR 210 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence 999999999999999999999999999999999753 22332222345666789999999432 222
Q ss_pred HHHHH-hhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCccccccc
Q 019445 221 AVGKV-LPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILG 280 (341)
Q Consensus 221 ~~~~~-lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~ 280 (341)
+ |++ .||+++ +++++++|||++|||+.++|++++++++.++++++|++ .||++++.
T Consensus 211 ~-erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~---~p~v~v~~ 274 (336)
T PRK08040 211 E-ERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQ---GEDIVLSE 274 (336)
T ss_pred H-hhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhc---CCCEEEEC
Confidence 2 344 666654 26789999999999999999999999999999999987 58888875
No 26
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3e-37 Score=295.20 Aligned_cols=297 Identities=14% Similarity=0.148 Sum_probs=215.7
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHH--cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~--~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~ 77 (341)
|+. |+||+|+|+ |++|++++|+|. +||.++++.+.+....++. +.+.++
T Consensus 1 m~~--~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~--------------------------l~~~~~ 52 (336)
T PRK05671 1 MSQ--PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS--------------------------VPFAGK 52 (336)
T ss_pred CCC--CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe--------------------------eccCCc
Confidence 543 479999999 999999999999 7899999999876322221 111122
Q ss_pred EEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--CCCeeeeccCccccCC--CCcEEe
Q 019445 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKP--ELDIVS 153 (341)
Q Consensus 78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d~~~~V~Gvn~~~~~~--~~~iIs 153 (341)
... +.+ ++..+| .++|+||+|+|++.+.+++++++++|+++||+|++++ +.|..++++|++.++. +.++||
T Consensus 53 ~l~-~~~--~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIA 127 (336)
T PRK05671 53 NLR-VRE--VDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVS 127 (336)
T ss_pred ceE-Eee--CChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEE
Confidence 122 222 222234 3899999999999999999999999999999999987 6899999999998873 278999
Q ss_pred CCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee------------eeCCCCCCcccccccccccccccC-----
Q 019445 154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSMKDWRGGRAASFNIIPSST----- 216 (341)
Q Consensus 154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d~~s~~~~~~gr~~~~niiP~~~----- 216 (341)
||||+||+++..|++|++.+++++..+++++++||.++- .++.......+++++++|++|+..
T Consensus 128 nPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~ 207 (336)
T PRK05671 128 SPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQ 207 (336)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccC
Confidence 999999999999999998899999999999999997531 111111233456788899999874
Q ss_pred ChhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeec
Q 019445 217 GAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVST 289 (341)
Q Consensus 217 g~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~ 289 (341)
|..+++.||.||+++ +++++++|||++|||+.++|++++++++.++++++|+ +.||+.++.-.+-|-.-.
T Consensus 208 gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~---~~~~v~v~~~~~~p~~~~ 284 (336)
T PRK05671 208 GHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE---AAPGIELVEAGDYPTPVG 284 (336)
T ss_pred CccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh---CCCCeEEeCCCCCCCChH
Confidence 556677888888876 2678999999999999999999999999999999988 458888875322232212
Q ss_pred ccCCCcceeEEeCCCcce--ecCCeEEEEEEeCCCc-chhhhHHHHHHHH
Q 019445 290 DFVGDSRSSIFDAKAGIA--LSKNFVKLVSWYDNEW-GYSSRVIDLIVHM 336 (341)
Q Consensus 290 d~~~~~~s~~~d~~~~~~--~~~~~~k~~~wydne~-gy~~r~~d~~~~~ 336 (341)
|..|..+-.| +.... -.++.+.+.+=-||=. |=|-.-+-.++.+
T Consensus 285 ~v~g~~~~~v---g~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l 331 (336)
T PRK05671 285 DAVGQDVVYV---GRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELL 331 (336)
T ss_pred HcCCCCeEEE---EEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHH
Confidence 4455543221 11100 1234456666678843 4444444444433
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-37 Score=292.42 Aligned_cols=239 Identities=17% Similarity=0.278 Sum_probs=187.1
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECC
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE 76 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g 76 (341)
|+.. .+||||+|+ |++|++++|+|.+||+|+ |..+.+....++ .+.+.+
T Consensus 1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk--------------------------~~~~~~ 53 (347)
T PRK06728 1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGK--------------------------TVQFKG 53 (347)
T ss_pred CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCC--------------------------CeeeCC
Confidence 6653 479999999 999999999999999998 556655422221 233333
Q ss_pred EEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCCCcEEe
Q 019445 77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPELDIVS 153 (341)
Q Consensus 77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~~~iIs 153 (341)
+.+.+ ++.+++. | .++|+||+|+|++.++++++++.++|+++||+|++++ +.|..++++|+++++...++|+
T Consensus 54 ~~l~v-~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIa 128 (347)
T PRK06728 54 REIII-QEAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIA 128 (347)
T ss_pred cceEE-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEE
Confidence 33333 2334433 4 3899999999999999999999999999999999987 5899999999999884337999
Q ss_pred CCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccc-------cccccccccc
Q 019445 154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGG-------RAASFNIIPS 214 (341)
Q Consensus 154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~g-------r~~~~niiP~ 214 (341)
||||+|++++..|++|+++++|++..++|++++||.++ ++++.......++ +.+++|++|+
T Consensus 129 nPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~ 208 (347)
T PRK06728 129 VPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQ 208 (347)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCc
Confidence 99999999999999999999999999999999999642 2333222233345 8899999999
Q ss_pred c-----CChhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhh
Q 019445 215 S-----TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES 271 (341)
Q Consensus 215 ~-----~g~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~ 271 (341)
. .|..+|+.|+.-|.++ +++.||+|||+++||...++++++++++.++++++|+++.
T Consensus 209 i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~ 277 (347)
T PRK06728 209 VDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277 (347)
T ss_pred CCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 8 3444444444333322 3789999999999999999999999999999999998764
No 28
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=9.2e-36 Score=287.73 Aligned_cols=246 Identities=20% Similarity=0.235 Sum_probs=186.6
Q ss_pred CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe-eCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445 4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV 81 (341)
Q Consensus 4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i-~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v 81 (341)
|||+||+|+|+ |++|++++|+|.+||++||+.+ .+.+..++.+..++.+ ..+|.+. + .+ ..+.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~-~~~~~~~-~--------~~----~~~~- 65 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRW-QLDGPIP-E--------EV----ADME- 65 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccc-ccccccc-c--------cc----cceE-
Confidence 35789999999 9999999999999999999999 5542233222111000 0000111 0 00 1111
Q ss_pred EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccC----------CC
Q 019445 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK----------PE 148 (341)
Q Consensus 82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~----------~~ 148 (341)
+...+++. | .++|+||+|+|++.+.+.++++.++|+++||+|++++ +.|..++++|++.|. ++
T Consensus 66 v~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 66 VVSTDPEA--V--DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred EEeCCHHH--h--cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 22224443 2 3799999999999999999988899999999999876 367888999965442 23
Q ss_pred CcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhh
Q 019445 149 LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPA 228 (341)
Q Consensus 149 ~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpe 228 (341)
.++||||||||||+++.+++|++ |||++..++++|++||.++ ++. ..+.+++|++||..+. +|||.||
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~-----~~~---~~~~~~~N~~p~~~~~---ehrh~~E 209 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGY-----PGV---PSMDIVDNVIPYIGGE---EEKIEKE 209 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCc-----ccc---hhhhhhcCcccccCch---hhhhhHH
Confidence 57999999999999999999999 9999999999999999854 111 1456889999999873 3444444
Q ss_pred h---------------cCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc----------C-ccccccc
Q 019445 229 L---------------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE----------G-KLKGILG 280 (341)
Q Consensus 229 l---------------~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~----------~-~~~~il~ 280 (341)
+ +.+++++++|||++|||+.++|++++++++.+|++++|+++|+ + ||++++.
T Consensus 210 i~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~ 287 (349)
T PRK08664 210 TLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFE 287 (349)
T ss_pred HHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeC
Confidence 4 3458899999999999999999999999999999999999998 4 8888874
No 29
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=3e-36 Score=284.44 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=187.8
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||||+|+ ||+|++|+|+|.+||+++++.+.+.. .. .+ .
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~--------------------------~~---------~-- 42 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RK--------------------------DA---------A-- 42 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CC--------------------------cc---------c--
Confidence 689999999 99999999999999999999997541 00 00 0
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeecc---Cc---cccCCCCcEEeCCCCc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGV---NE---KEYKPELDIVSNASCT 158 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gv---n~---~~~~~~~~iIsnp~C~ 158 (341)
+.+ ..| .++|+||+|+|++.++++++++.++|+++||+|++++-.+.++||+ |+ +.++ +.++||||||+
T Consensus 43 -~~~-~~~--~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanPgC~ 117 (313)
T PRK11863 43 -ARR-ELL--NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANPGCY 117 (313)
T ss_pred -Cch-hhh--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcCCcH
Confidence 111 123 3789999999999999999999999999999999987334455555 42 3455 68999999999
Q ss_pred cceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccc--ccccccccccccCChhHHHHHHhhhhcCc----
Q 019445 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRG--GRAASFNIIPSSTGAAKAVGKVLPALNGK---- 232 (341)
Q Consensus 159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~--gr~~~~niiP~~~g~~~~~~~~lpel~~~---- 232 (341)
+|+++..|+||+++..+++...++++++||... -|+.+...-. --....|++||..+. .|||.||+++.
T Consensus 118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SG--AG~~~~~~~~~~~~~~~~n~~~Y~~~~---~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSG--GGKAMIAAYEAAPDGKAPAFRLYGLGL---AHKHLPEMQAHAGLA 192 (313)
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEEEcccccc--CCccchHHHhhhhhhhccCeeeccCCc---CCcchHHHHHHhccc
Confidence 999999999998875555444577888764211 0111100000 011355888998761 27788887763
Q ss_pred --eeEEEEEeeeeeEeeEEEEEEe---CCCCCHHHHHHHHHHhhc-CcccccccCCC-cc--eeecccCCCcceeEEeCC
Q 019445 233 --LTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESE-GKLKGILGYTE-ED--VVSTDFVGDSRSSIFDAK 303 (341)
Q Consensus 233 --l~~~~~rVP~~~g~~~~l~v~l---~~~~~~~ei~~~~~~a~~-~~~~~il~~~~-~~--~vs~d~~~~~~s~~~d~~ 303 (341)
+.++++.+|+.||+++++|+++ +++++.+|++++|+++|+ +||++++...+ .| .-....+..+..|-+ .
T Consensus 193 ~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i--~ 270 (313)
T PRK11863 193 RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLEL--F 270 (313)
T ss_pred cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEE--E
Confidence 4579999999999999999997 888999999999999998 69999986543 22 222222222222221 1
Q ss_pred CcceecCCeEEEEEEeCCCc
Q 019445 304 AGIALSKNFVKLVSWYDNEW 323 (341)
Q Consensus 304 ~~~~~~~~~~k~~~wydne~ 323 (341)
....-.++.+++++=.||=.
T Consensus 271 v~~~~~~~~~~v~s~iDNL~ 290 (313)
T PRK11863 271 VFGNEDHGQAVLVARLDNLG 290 (313)
T ss_pred EEEcCCCCEEEEEEEccccc
Confidence 11111245688889999953
No 30
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=8.5e-36 Score=253.97 Aligned_cols=148 Identities=54% Similarity=0.921 Sum_probs=139.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
+||||+|+|++|+.++|.+.+++++++++++++ .++++++|||+|||+||+|+ .++..+++ .|.++|+.+.++++.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999999999999999997 79999999999999999999 88888777 8999999999999999
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCC
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC 157 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C 157 (341)
|++++|++.++|+|+||||.|.+++.++.|+++|+|+|++|+|++| .++||||+|+++|+++.++|||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 5699999999999866679999999
No 31
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=3.2e-36 Score=282.44 Aligned_cols=225 Identities=13% Similarity=0.134 Sum_probs=172.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
.||+|+|+ ||+|.||+|+|.+||++|++.+.+.+. |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------------cC-----------------------cC
Confidence 58999999 999999999999999999999976510 11 00
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccC------ccccCCCCcEEeCCCCcc
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN------EKEYKPELDIVSNASCTT 159 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn------~~~~~~~~~iIsnp~C~t 159 (341)
+++++ ..++|+||+|+|++.++++++++.++|+++||+|++++-.+.++||++ +++++ +.++||||||++
T Consensus 42 ~~~~~---~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC~a 117 (310)
T TIGR01851 42 ERAKL---LNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGCYP 117 (310)
T ss_pred CHhHh---hcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCCHH
Confidence 11222 137899999999999999999998999999999999874445555554 34455 689999999999
Q ss_pred ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCC-Ccc-ccc--ccccccccccCC-hhHHHHHHhhhhcCc--
Q 019445 160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWR-GGR--AASFNIIPSSTG-AAKAVGKVLPALNGK-- 232 (341)
Q Consensus 160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~-~~~-~gr--~~~~niiP~~~g-~~~~~~~~lpel~~~-- 232 (341)
|+++..|+||+++..|++...++++++||... -|+.+. ... ..+ ....|+.||..+ . |||+||+++.
T Consensus 118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG~SG--AGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~----HrH~pEi~q~l~ 191 (310)
T TIGR01851 118 TGFIALMRPLVEAGILPADFPITINAVSGYSG--GGKAMIADYEQGSADNPSLQPFRIYGLALT----HKHLPEMRVHSG 191 (310)
T ss_pred HHHHHHHHHHHHcCCccccceEEEEeccccCc--cChhhhHHhhhcccchhhccCceeccCCCC----CCcHHHHHHHhC
Confidence 99999999999886665554688888876211 011110 000 001 123467788755 3 8888888873
Q ss_pred ----eeEEEEEeeeeeEeeEEEEEEe---CCCCCHHHHHHHHHHhhc-CcccccccC
Q 019445 233 ----LTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESE-GKLKGILGY 281 (341)
Q Consensus 233 ----l~~~~~rVP~~~g~~~~l~v~l---~~~~~~~ei~~~~~~a~~-~~~~~il~~ 281 (341)
+.++++.+|++||+++|+|+++ +++++.+|++++|+++|+ +||++|+..
T Consensus 192 ~~~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~ 248 (310)
T TIGR01851 192 LALPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPL 248 (310)
T ss_pred CCCCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecC
Confidence 6789999999999999999999 888999999999999998 699999844
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=5.4e-35 Score=281.54 Aligned_cols=240 Identities=19% Similarity=0.221 Sum_probs=181.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCC-CChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPF-ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~-~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+||||+|+ |++|++|+|+|.+||+++|+++.+.. ..++... ..++.+. . + .+...-... .++.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~------~~~~~~~-----~-~--~~~~~~~~~-~~~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYG------EAVKWIE-----P-G--DMPEYVRDL-PIVE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcch------hhccccc-----c-C--CCcccccee-EEEe
Confidence 48999999 99999999999999999999995431 1122211 1111100 0 0 000000111 2222
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC---------CCcEE
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP---------ELDIV 152 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~---------~~~iI 152 (341)
.+++ .| .++|+||+|+|++.+.+.++++.++|+++||+|++++ +.|.+++++|++.|.. +.++|
T Consensus 66 ~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iV 141 (341)
T TIGR00978 66 PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIV 141 (341)
T ss_pred CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEE
Confidence 2332 23 4899999999999999999999999999999999986 4789999999654431 35799
Q ss_pred eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCCh-h---HHHHHHhhh
Q 019445 153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-A---KAVGKVLPA 228 (341)
Q Consensus 153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~-~---~~~~~~lpe 228 (341)
|||||||||+++.+++|+++++|++..++++|++||.++. +.. .+.+++|++||..+. . .|+.++++.
T Consensus 142 anPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~-----~~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 142 TNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYP-----GVP---SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCC-----CCc---cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998652 111 245788999999774 2 245555554
Q ss_pred hcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC
Q 019445 229 LNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG 273 (341)
Q Consensus 229 l~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~ 273 (341)
+.+ +++++++|||++|||++++|++++++++.++++++|+++|+.
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~ 266 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGL 266 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCc
Confidence 432 377899999999999999999999999999999999999874
No 33
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-34 Score=270.93 Aligned_cols=235 Identities=19% Similarity=0.244 Sum_probs=185.4
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
.+++||| |+ |.+|++++++|.++. | .+.+. ++| ++. +. +.++++.++|+.+.+.
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~-f---pv~~l--------~l~--~s~---~~------s~gk~i~f~g~~~~V~- 56 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSD-L---EIEQI--------SIV--EIE---PF------GEEQGIRFNNKAVEQI- 56 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcC-C---chhhe--------eec--ccc---cc------cCCCEEEECCEEEEEE-
Confidence 3568999 99 999999999999875 5 22211 111 110 00 0112677888887766
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--CCcEEeCCCCc
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--ELDIVSNASCT 158 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~~~iIsnp~C~ 158 (341)
+.++.+|+ ++|++|+ +|...++++++.+.++|+.+||.|..++ |+|++|+++|++.+.. ...||+||+|+
T Consensus 57 --~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs 131 (322)
T PRK06901 57 --APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ 131 (322)
T ss_pred --ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence 44555564 8999999 8999999999999999996665555544 6999999999888874 25799999999
Q ss_pred cceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccC-ChhHHHHHH
Q 019445 159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST-GAAKAVGKV 225 (341)
Q Consensus 159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~-g~~~~~~~~ 225 (341)
|.++++.|++||+.|||++..++|+||+||.++ ++++... .. ..+++++|++|+.. +-..|.+|+
T Consensus 132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~-~~-~~~~iAFNviP~ig~~m~~EtrKI 209 (322)
T PRK06901 132 VSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL-DE-EEQRLAFDVFPANAQNLELQLQKI 209 (322)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC-CC-CceeeeccccccCCccHHHHHHHH
Confidence 999999999999999999999999999999641 3333322 11 23889999999994 556788999
Q ss_pred hhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445 226 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (341)
Q Consensus 226 lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~ 272 (341)
+|++ .+++.||+|||+++||...++++++++++.++++++|+++..
T Consensus 210 l~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~g 255 (322)
T PRK06901 210 FPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNL 255 (322)
T ss_pred hCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 9888 248999999999999999999999999999999999998764
No 34
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-35 Score=278.94 Aligned_cols=234 Identities=15% Similarity=0.163 Sum_probs=178.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
+||||+|+ |++|++++|++++||+|+ ++...+.+..++ ... ++|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~-----------~~~---------------f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGA-----------APS---------------FGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCc-----------ccc---------------cCCCcceEE
Confidence 69999999 999999999999999887 666444311111 011 223333344
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc--EEEecCCCC---CCCeeeeccCccccCCC---C-cEEe
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAPSK---DAPMFVVGVNEKEYKPE---L-DIVS 153 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k--~V~lSa~~~---d~~~~V~Gvn~~~~~~~---~-~iIs 153 (341)
...+++ .| .++|+||+|+|+..++++++++.++|++ +||+|++++ |.|.+++++|++.+... . ++|+
T Consensus 56 ~~~~~~--~~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDID--AL--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChh--Hh--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 222232 24 3899999999999999999999999955 788888776 59999999999888631 1 5899
Q ss_pred CCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee------------ee-------------------------CC
Q 019445 154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------GP 196 (341)
Q Consensus 154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d-------------------------~~ 196 (341)
||||+|++++..|++|+++++|++..++|++++||.++- ++ +.
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSG 211 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccC
Confidence 999999999999999999999999999999999997531 11 22
Q ss_pred CCCCccccccccccccccc-----CChhHHHHHHhhhhcC---------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHH
Q 019445 197 SMKDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALNG---------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEE 262 (341)
Q Consensus 197 s~~~~~~gr~~~~niiP~~-----~g~~~~~~~~lpel~~---------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~e 262 (341)
......+++.+++|++|+. .|.++|+.|+.-|.++ ++++||+|||+++||...++++++++++.++
T Consensus 212 ~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~ 291 (369)
T PRK06598 212 DLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAE 291 (369)
T ss_pred CCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHH
Confidence 2223445678999999997 3544554333333221 3789999999999999999999999999999
Q ss_pred HHHHHHHh
Q 019445 263 IKNAIKEE 270 (341)
Q Consensus 263 i~~~~~~a 270 (341)
++++++++
T Consensus 292 i~~~L~~~ 299 (369)
T PRK06598 292 IEEILAAH 299 (369)
T ss_pred HHHHHHhc
Confidence 99999985
No 35
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=2.3e-34 Score=277.37 Aligned_cols=295 Identities=19% Similarity=0.195 Sum_probs=199.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC-CCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~-~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+||||+|+ |++|++++|+|.+||+++++++.+ ....++.+ ...|+.+. +.. .. .+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~------~~~~~~l~-~~~-------------~~-~~~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV------SEVHPHLR-GLV-------------DL-NLEP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh------HHhCcccc-ccC-------------Cc-eeec
Confidence 48999999 999999999999999999998743 32122211 12233222 100 01 1111
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCC------------------eeeecc---Cc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP------------------MFVVGV---NE 142 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~------------------~~V~Gv---n~ 142 (341)
.++++ |. .++|+||+|+|++.+++.+++++++|+++||+|++++ +.+ .++||+ |+
T Consensus 60 ~~~~~--~~-~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 60 IDEEE--IA-EDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred CCHHH--hh-cCCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 12222 21 3799999999999999999999999999999999986 211 355655 57
Q ss_pred cccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh-
Q 019445 143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA- 219 (341)
Q Consensus 143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~- 219 (341)
++++ +.++||||||++|++...|++|++++.|+ +..+++++++||.++-........ ....|++||..+..
T Consensus 137 ~~i~-~~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~-----~~~~~~~~y~~~~h~ 210 (346)
T TIGR01850 137 EEIK-GARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFP-----EVNENLRPYKVTGHR 210 (346)
T ss_pred HHhC-CCcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccch-----hhcCCeeeeccCCcC
Confidence 7887 68899999999999999999999998886 678899999999865211111111 12357888875532
Q ss_pred --HHHHHHhhhhcC---ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCC
Q 019445 220 --KAVGKVLPALNG---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVG 293 (341)
Q Consensus 220 --~~~~~~lpel~~---~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~ 293 (341)
.|+.+.+..+.+ +++++++|||++|||+.+++++++++++.+|++++|+++|+ +||++++.-.+-|-.- +..|
T Consensus 211 h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~~-~v~g 289 (346)
T TIGR01850 211 HTPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPSTK-AVIG 289 (346)
T ss_pred cHHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcChH-HhcC
Confidence 233333332211 37899999999999999999999999999999999999998 5999987542123221 2334
Q ss_pred CcceeEEeCCCccee--cCCeEEEEEEeCCCc-chhhhHHHHHHHHh
Q 019445 294 DSRSSIFDAKAGIAL--SKNFVKLVSWYDNEW-GYSSRVIDLIVHMA 337 (341)
Q Consensus 294 ~~~s~~~d~~~~~~~--~~~~~k~~~wydne~-gy~~r~~d~~~~~~ 337 (341)
.-+-.| + ... ..+.+.+++=-||=. |=|-+-+-.++.|-
T Consensus 290 ~n~~~i---g--~~~d~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~ 331 (346)
T TIGR01850 290 SNFCDI---G--FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331 (346)
T ss_pred CCeEEE---E--EEEcCCCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence 333222 2 122 134566777788853 44444444455443
No 36
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=1.7e-33 Score=270.30 Aligned_cols=242 Identities=15% Similarity=0.183 Sum_probs=186.7
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 6 KIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
++||+|+|+ ||+|++++|+|.+ ||.+++..+.+.+..++. +..++..+. +
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--------------------------~~~~~~~~~-v 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--------------------------VTFEGRDYT-V 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--------------------------eeecCceeE-E
Confidence 589999999 9999999999998 999999999765222221 111222222 2
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCC------CcEEe
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPE------LDIVS 153 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~------~~iIs 153 (341)
.+.+++ .| .++|+||+|+|++.++++++++.++|+++||+|++++ +.|..++++|++.++.. .++|+
T Consensus 60 ~~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIa 135 (344)
T PLN02383 60 EELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIA 135 (344)
T ss_pred EeCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEE
Confidence 222322 23 3899999999999999999999999999999999987 48899999998888731 23999
Q ss_pred CCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccC-----
Q 019445 154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST----- 216 (341)
Q Consensus 154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~----- 216 (341)
||||+||+++..|++|+++++|++..+++++++||.++ ++.+.+....+++...++|++|+..
T Consensus 136 nPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~ 215 (344)
T PLN02383 136 NPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQEN 215 (344)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccC
Confidence 99999999999999999999999999999999999743 1222222345667788899999874
Q ss_pred ChhHHHHHHhhhh-----c--CceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445 217 GAAKAVGKVLPAL-----N--GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 281 (341)
Q Consensus 217 g~~~~~~~~lpel-----~--~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~ 281 (341)
|..+++.++.-|+ . -+++++|+|||++|||+.++|++++++++.++++++|++ .||++++..
T Consensus 216 g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~---~p~v~v~~~ 284 (344)
T PLN02383 216 GYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILAS---APGVKIIDD 284 (344)
T ss_pred CCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhc---CCCCEEEeC
Confidence 2222222222222 1 138899999999999999999999999999999999987 588888765
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=2.4e-33 Score=272.53 Aligned_cols=240 Identities=16% Similarity=0.126 Sum_probs=176.2
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
+++||+|+|+ |++|++++|+|.+||++||+.+.+....++.+ ...++.+. +.....+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i------~~~~~~l~---------------~~~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF------GSVFPHLI---------------TQDLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc------hhhCcccc---------------Ccccccee
Confidence 3579999999 99999999999999999999998753333211 11122111 00111111
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---C--------CCe--------eeeccC---
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D--------APM--------FVVGVN--- 141 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d--------~~~--------~V~Gvn--- 141 (341)
+.+..+| .++|+||+|+|++.++++++++ ++|+++||+|++++ + .|. .+||++
T Consensus 96 --~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~ 170 (381)
T PLN02968 96 --AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQ 170 (381)
T ss_pred --cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhC
Confidence 1122223 3899999999999999999985 78999999999986 1 232 356653
Q ss_pred ccccCCCCcEEeCCCCccceecchhHHHhhhcce--eEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh
Q 019445 142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA 219 (341)
Q Consensus 142 ~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi--~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~ 219 (341)
+++++ +.++||||||+||++...|++|+++++| ++..+++++++||.++-. ...---.....|+.||.-+.
T Consensus 171 r~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~-----~~~~l~~e~~~n~~~y~~~~- 243 (381)
T PLN02968 171 REEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGA-----KEANLYTEIAEGIGAYGVTR- 243 (381)
T ss_pred HHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCccc-----chhhhHHHhcccceeeccCC-
Confidence 56666 6889999999999999999999999999 678889999999876421 11100122234667776552
Q ss_pred HHHHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-Cccccccc
Q 019445 220 KAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILG 280 (341)
Q Consensus 220 ~~~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~ 280 (341)
|+|+||+++ +++++++|||++|||+.+++++++++++.+|++++|+++|+ .||++++.
T Consensus 244 ---h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~ 312 (381)
T PLN02968 244 ---HRHVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLE 312 (381)
T ss_pred ---CCCcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCC
Confidence 566666332 37899999999999999999999999999999999999887 59999874
No 38
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=1.4e-32 Score=264.90 Aligned_cols=295 Identities=21% Similarity=0.218 Sum_probs=199.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||+|+|+ |++|++++|+|.+||+++++++.+....++.++ ..++.+. . + . .. .+.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~------~~~~~~~-~---------~-~---~~-~~~~ 60 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS------DVHPHLR-G---------L-V---DL-VLEP 60 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH------HhCcccc-c---------c-c---Cc-eeec
Confidence 479999999 999999999999999999999987522222111 1222222 0 0 0 01 1221
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--C--------------------CCeeeeccCc
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--D--------------------APMFVVGVNE 142 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d--------------------~~~~V~Gvn~ 142 (341)
.++..| .++|+||.|||+..+.+.+++++++|+++||+|++++ + .|..++++|+
T Consensus 61 --~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~ 136 (343)
T PRK00436 61 --LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNR 136 (343)
T ss_pred --CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCH
Confidence 222122 4799999999999999999999999999999999976 1 2344444567
Q ss_pred cccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCccee-eeCCCCCCcccccccccccccccCCh-
Q 019445 143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGA- 218 (341)
Q Consensus 143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~-~d~~s~~~~~~gr~~~~niiP~~~g~- 218 (341)
++++ +.++||||||+||+++..|++|++..+|+ +..+++++++||.++- .+..+ .... ..|++||..+.
T Consensus 137 ~~i~-~~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~-~~~~-----~~~~~~y~~~~h 209 (343)
T PRK00436 137 EEIK-GARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTL-FSEV-----NENLRPYKVGGH 209 (343)
T ss_pred HHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCcccccc-chhh-----cCCeeecccCCC
Confidence 8887 57999999999999999999999988887 7999999999998652 22111 1111 24666666542
Q ss_pred --hHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCc
Q 019445 219 --AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDS 295 (341)
Q Consensus 219 --~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~ 295 (341)
.+|+.+++..+.++++++++|||++|||+.+++++++++++.+|++++|+++|+ +||+++..-..-|-.- +..|..
T Consensus 210 ~h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~~~p~~~-~v~g~~ 288 (343)
T PRK00436 210 RHTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETK-SVRGSN 288 (343)
T ss_pred CCHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcchh-hhCCCC
Confidence 223333333332258899999999999999999999999999999999999998 5998887532112111 223433
Q ss_pred ceeEEeCCCcceecCCeEEEEEEeCCCc-chhhhHHHHHHHH
Q 019445 296 RSSIFDAKAGIALSKNFVKLVSWYDNEW-GYSSRVIDLIVHM 336 (341)
Q Consensus 296 ~s~~~d~~~~~~~~~~~~k~~~wydne~-gy~~r~~d~~~~~ 336 (341)
+-.| +...-..++.+.+++=-||=- |=|-.-+-.++.|
T Consensus 289 ~~~i---g~~~d~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~ 327 (343)
T PRK00436 289 FCDI---GFAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIM 327 (343)
T ss_pred eEEE---EEEEcCCCCEEEEEEEecccchhHHHHHHHHHHHH
Confidence 2222 111001245677777788842 4344434344433
No 39
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-33 Score=259.25 Aligned_cols=285 Identities=21% Similarity=0.262 Sum_probs=198.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHc-CCCcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 6 KIKIGINGF-GRIGRLVARVALQ-RDDVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~-~p~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
|+||||+|+ |.+|++++++|.+ |+.++.+.+..+ +..++ .|..| .++.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~----------~~~~f---------------~~~~~~v~ 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGK----------KYIEF---------------GGKSIGVP 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCC----------ccccc---------------cCccccCc
Confidence 469999999 9999999999998 888875555432 11111 12222 22222221
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCCC--C-cEEeC
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L-DIVSN 154 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~~--~-~iIsn 154 (341)
+.-.+...|+ ++|+||+|.|...++++++++.++|+ ++||+.|. |+|.+|++||++.+... . +||+|
T Consensus 56 -~~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 56 -EDAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred -cccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEEC
Confidence 1003344554 89999999999999999999999998 77888764 69999999998776531 2 49999
Q ss_pred CCCccceecchhHHHhhhcceeEEEEEEEeeccCcce-e-----------eeCCCCCCcccccccccccccccCC-----
Q 019445 155 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-T-----------VDGPSMKDWRGGRAASFNIIPSSTG----- 217 (341)
Q Consensus 155 p~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~-~-----------~d~~s~~~~~~gr~~~~niiP~~~g----- 217 (341)
|+|+|..|++.||+|+++|+|++..++|+||+||.+. . .++.+- +. .++.+++|++|+..+
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i-~~-~~~~iAfNviP~I~~~~~ng 208 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPI-LP-IGYPLAFNVIPHIDGFLDNG 208 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccc-cc-ccccccccccccCCccccCC
Confidence 9999999999999999999999999999999999754 1 112221 11 167889999999965
Q ss_pred hhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCC-cceeec
Q 019445 218 AAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTE-EDVVST 289 (341)
Q Consensus 218 ~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~-~~~vs~ 289 (341)
..+|+.|+.-|.++ +++++|+|||+++||...++++++++++.+|+.+.+... .|-+-+....+ .|+.-.
T Consensus 209 ~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~--ap~v~v~~~~~~~P~~~~ 286 (334)
T COG0136 209 YTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPS--APGVVVVDNPEDRPQTPL 286 (334)
T ss_pred ccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhcc--CCCcEEEeCCccCccChh
Confidence 55565555544433 588999999999999999999999999999999665332 23333333222 455555
Q ss_pred ccCCCcceeEEeCCCcce-ecCCeEEEEEEeCC-Ccchh
Q 019445 290 DFVGDSRSSIFDAKAGIA-LSKNFVKLVSWYDN-EWGYS 326 (341)
Q Consensus 290 d~~~~~~s~~~d~~~~~~-~~~~~~k~~~wydn-e~gy~ 326 (341)
|-.|... ++-.+...- ..++.+++..==|| -||=|
T Consensus 287 d~~g~~~--v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA 323 (334)
T COG0136 287 DATGGDE--VSVGRIRKDLSGPEGLKLWVVGDNLRKGAA 323 (334)
T ss_pred hhcCCCc--eEEeEeeecCCCCCcEEEEEEechhhhhhH
Confidence 6666552 222221110 12344666555676 34533
No 40
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.3e-32 Score=263.48 Aligned_cols=233 Identities=15% Similarity=0.185 Sum_probs=174.6
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
+||||+|+ |.+|++++++|.+|++|. +....+.+..++ .+.++++...+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~--------------------------~~~f~~~~~~v~ 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQA--------------------------APSFGGTTGTLQ 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCC--------------------------cCCCCCCcceEE
Confidence 38999999 999999999999887774 333333211111 222334433333
Q ss_pred ecCCCCCC-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCCC--CcE--E
Q 019445 83 GFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDI--V 152 (341)
Q Consensus 83 ~~~~~~~~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~~--~~i--I 152 (341)
+.++. .| .++|+||+|.|...++++++++.++|...++||++++ |+|++|++||++.+... ..+ |
T Consensus 55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i 129 (366)
T TIGR01745 55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF 129 (366)
T ss_pred ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence 23232 34 4899999999999999999999999943255555543 69999999998877642 456 8
Q ss_pred eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eee--------CC----------------
Q 019445 153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVD--------GP---------------- 196 (341)
Q Consensus 153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d--------~~---------------- 196 (341)
+||+|+|+.+++.|++||++|+|++..++|+||+||.+. +.+ +.
T Consensus 130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~ 209 (366)
T TIGR01745 130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS 209 (366)
T ss_pred ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence 999999999999999999999999999999999999762 112 10
Q ss_pred -CCCCcccccccccccccccC-----ChhHHHHHHhhhhcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHH
Q 019445 197 -SMKDWRGGRAASFNIIPSST-----GAAKAVGKVLPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEE 262 (341)
Q Consensus 197 -s~~~~~~gr~~~~niiP~~~-----g~~~~~~~~lpel~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~e 262 (341)
......+++++++|++|+.. |.++|+.|+.-|.++ ++++||+|||+++||...++++++++++.++
T Consensus 210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~ 289 (366)
T TIGR01745 210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET 289 (366)
T ss_pred CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence 11234467889999999983 444554443333221 3789999999999999999999999999999
Q ss_pred HHHHHHHh
Q 019445 263 IKNAIKEE 270 (341)
Q Consensus 263 i~~~~~~a 270 (341)
++++++++
T Consensus 290 i~~~L~~~ 297 (366)
T TIGR01745 290 IEEIIRAH 297 (366)
T ss_pred HHHHHHhC
Confidence 99999985
No 41
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=192.78 Aligned_cols=273 Identities=18% Similarity=0.209 Sum_probs=182.9
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
..+|||.+|+ ||+|.+++|++.+||++|+.-+.+....++.+. .|.+.. +... .|..
T Consensus 18 k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-------~ytk~e---iqy~---~lst--------- 75 (340)
T KOG4354|consen 18 KDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-------VYTKLE---IQYA---DLST--------- 75 (340)
T ss_pred CCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-------Ccchhh---eeec---ccch---------
Confidence 3589999999 999999999999999999999987633333221 122111 1000 1111
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHh--CCCcEEEecCCCCCCC--eeeeccC----ccccCCCCcEEeCC
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSKDAP--MFVVGVN----EKEYKPELDIVSNA 155 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~--~G~k~V~lSa~~~d~~--~~V~Gvn----~~~~~~~~~iIsnp 155 (341)
.|...+. ....+|..+.++|..+-+..+...-. ..-+.|++|++-+-.| .++||++ +++++ +++.||||
T Consensus 76 -~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNP 152 (340)
T KOG4354|consen 76 -VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANP 152 (340)
T ss_pred -hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCC
Confidence 0111110 01256888889998877766654332 2345677888866555 8999996 67777 68999999
Q ss_pred CCccce----ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccc---------ccccccccCChhHHH
Q 019445 156 SCTTNC----LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA---------SFNIIPSSTGAAKAV 222 (341)
Q Consensus 156 ~C~tt~----Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~---------~~niiP~~~g~~~~~ 222 (341)
|||+|. |.|++|.+.- +.-++|.|| .+++|+.+ +.|++||.-..
T Consensus 153 GCYaTgsQl~l~Pllk~i~g------------------~p~ifgvSG-ySGAGtkpspkNd~~~l~nnlipY~ltd---- 209 (340)
T KOG4354|consen 153 GCYATGSQLPLVPLLKAILG------------------KPEIFGVSG-YSGAGTKPSPKNDYSELANNLIPYGLTD---- 209 (340)
T ss_pred CcccccCcccchHHHHHhcC------------------Ccceeeecc-ccCCCCCCCCccCHHHHhcCCccccccc----
Confidence 999998 8888887531 112344554 55556553 56899998432
Q ss_pred HHHhhhhcC----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCcce
Q 019445 223 GKVLPALNG----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDSRS 297 (341)
Q Consensus 223 ~~~lpel~~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~~s 297 (341)
|.|.||+.+ .+.++++..|.++|+..|+++.+++.++.+|++++|+..|+ ++|+.+++ |=|+|- |..|.-|-
T Consensus 210 HiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlvk-dv~gsh~v 286 (340)
T KOG4354|consen 210 HIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLVK-DVRGSHYV 286 (340)
T ss_pred cchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeec--ccccee-ccCCccee
Confidence 555666665 46889999999999999999999999999999999999999 69998874 456653 55654443
Q ss_pred eEEeCCCcceecCCeEEEEEEeCCCc-chhhhHH
Q 019445 298 SIFDAKAGIALSKNFVKLVSWYDNEW-GYSSRVI 330 (341)
Q Consensus 298 ~~~d~~~~~~~~~~~~k~~~wydne~-gy~~r~~ 330 (341)
. +- +...-..++.+-+++=-||-. |=|.+-+
T Consensus 287 ~-~g-gF~~~~~g~Ravii~tIDNLlKGAatQaL 318 (340)
T KOG4354|consen 287 H-MG-GFPDRIPGDRAVIISTIDNLLKGAATQAL 318 (340)
T ss_pred E-ec-cccCCCCCceEEEEEehhhhhhhHHHHHH
Confidence 2 21 222222345567777777743 4444444
No 42
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.84 E-value=7.5e-21 Score=170.38 Aligned_cols=238 Identities=16% Similarity=0.214 Sum_probs=172.5
Q ss_pred eeEE-EEcc-CHHHHHHHHHHHcCCCcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 7 IKIG-INGF-GRIGRLVARVALQRDDVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 7 irV~-I~G~-G~iG~~llr~l~~~p~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
.|+| |+|+ |.+|++++-+|.+||+|+|..+... ...++. | ...++|+ .+.-.++. -..+. ..
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~------y-a~a~~wk-qt~~lp~~------~~e~~-V~ 68 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR------Y-AFAGNWK-QTDLLPES------AHEYT-VE 68 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc------e-Eecccch-hcccccch------hhhhh-Hh
Confidence 3566 9999 9999999999999999998877433 223332 1 2245676 43322221 01122 23
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCC-----------
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----------- 147 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~----------- 147 (341)
+.+++.+ .++|+||+.++...+.+.-+.+.++|. +++|+... ++|++|+.+|+|.++.
T Consensus 69 ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~ 142 (361)
T KOG4777|consen 69 ECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMG 142 (361)
T ss_pred hcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCC
Confidence 4455553 489999999999999999999999998 88888753 4999999999877652
Q ss_pred CCcEEeCCCCccceecchhHHHhhhcc-eeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhH----HH
Q 019445 148 ELDIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK----AV 222 (341)
Q Consensus 148 ~~~iIsnp~C~tt~Lapllk~L~~~fg-i~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~----~~ 222 (341)
..-||+|++|.|..+...+|+||++|| |++-.++|+||+||.+.- .| ..+-....|++|+..|... +.
T Consensus 143 ~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~a----pg---v~~vdildnilp~iggee~k~ewet 215 (361)
T KOG4777|consen 143 KGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAA----PG---VELVDILDNILPGIGGEENKFEWET 215 (361)
T ss_pred CceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcC----CC---chHHHHHHhhcCCCCccchhhhHHH
Confidence 357999999999998888999999996 777778999999987531 11 1123456689999977533 34
Q ss_pred HHHhhhhcC-----------ceeEEEEEeeeeeEeeEEEEEEeCCC--CCHHHHHHHHHHhhc
Q 019445 223 GKVLPALNG-----------KLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKEESE 272 (341)
Q Consensus 223 ~~~lpel~~-----------~l~~~~~rVP~~~g~~~~l~v~l~~~--~~~~ei~~~~~~a~~ 272 (341)
.+++-..+. .++..|-|||+.+||+.-+.+++.-+ .+.+|+..++.++.-
T Consensus 216 ~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~ 278 (361)
T KOG4777|consen 216 AKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVL 278 (361)
T ss_pred HHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccC
Confidence 555543332 23567889999999999999998744 378899999888653
No 43
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.64 E-value=1.8e-15 Score=142.14 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=138.4
Q ss_pred CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
|.++||||+|.|.||..++..+.+.|+++++++.+...+...++. ...+|... ...+... +.
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~----A~~~Gi~~------------~~~~ie~-LL- 63 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR----ARRLGVAT------------SAEGIDG-LL- 63 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH----HHHcCCCc------------ccCCHHH-HH-
Confidence 457899999999999998988888999999999986322111111 11111100 0001000 00
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC--CCcEEeCCCCccce
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNC 161 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIsnp~C~tt~ 161 (341)
+..+| .++|+||+|||...+.+++++++++|+.++|.+... ..|++|+.+|.+++.. +.++|+||+|.|+.
T Consensus 64 ----~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~sPA~-~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~ 136 (302)
T PRK08300 64 ----AMPEF--DDIDIVFDATSAGAHVRHAAKLREAGIRAIDLTPAA-IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP 136 (302)
T ss_pred ----hCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCCeEEECCccc-cCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence 11123 379999999999999999999999999777765433 6899999999766643 46899999999999
Q ss_pred ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe-
Q 019445 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV- 240 (341)
Q Consensus 162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV- 240 (341)
++..++++++. ++.+.. .|+++.|. | .|.+. ||--+.. ...+.+-++.|--.+-++.+
T Consensus 137 ~v~Al~~v~~~-~~~eIv-at~~s~s~---------g-~gtr~-----nidE~~~----~t~~~~~~~~g~~~~kai~~~ 195 (302)
T PRK08300 137 IVAAVSRVAPV-HYAEIV-ASIASKSA---------G-PGTRA-----NIDEFTE----TTSRAIEKVGGAARGKAIIIL 195 (302)
T ss_pred HHHHhcccCcC-ceeeee-eeehhhcc---------C-Ccccc-----cHHHHHH----HHHHHHHHhcCcccceEEEEe
Confidence 98888887654 555443 66655541 1 22211 3311111 11222333333212222221
Q ss_pred -ee--eeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445 241 -PT--VDVSVVDLTVRLEKEATYEEIKNAIKEESE 272 (341)
Q Consensus 241 -P~--~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~ 272 (341)
|. +--+--|++|..+.+.+.+.|.+.+.+.-+
T Consensus 196 npa~p~~~m~~tv~~~~~~~~~~~~i~~~~~~~~~ 230 (302)
T PRK08300 196 NPAEPPLIMRDTVYCLVDEDADQDAIEASVHAMVA 230 (302)
T ss_pred cCCCCCccceeeEEEeeCCCCCHHHHHHHHHHHHH
Confidence 10 112345788888777888998888877554
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.63 E-value=1.7e-16 Score=130.69 Aligned_cols=114 Identities=26% Similarity=0.309 Sum_probs=83.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCC-ChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI-STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~-~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
||||+|+ ||+|++++|+|.+||++|++.+.+.+. .++.+. ..++.+. + ...+.+. +.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~------~~~~~~~-~-------------~~~~~~~-~~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS------EVFPHPK-G-------------FEDLSVE-DA 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH------HTTGGGT-T-------------TEEEBEE-ET
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee------hhccccc-c-------------ccceeEe-ec
Confidence 7999998 999999999999999999999988744 334333 2233222 1 0111111 12
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK 146 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~ 146 (341)
+++.+ .++|+||+|+|++.+++.+++++++|+++||+|++.+ +.|..++++|+++++
T Consensus 60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred chhHh----hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 33332 4899999999999999999999999999999999987 367777777887765
No 45
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.35 E-value=4.2e-12 Score=119.03 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=107.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++||||+|.|++|+.++..+++.++++++++.+...+...++. ...+|. .....+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~----A~~~Gi------------~~~~~~--------- 55 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR----ARELGV------------KTSAEG--------- 55 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH----HHHCCC------------CEEECC---------
Confidence 3799999999999999887777888999999986322111110 011110 000111
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC--CCcEEeCCCCccceec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLA 163 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIsnp~C~tt~La 163 (341)
.+.+ ....++|+||+|||...+.+.+.+++++|+.+++.+ |....|.+++.+|.++... +.++|+||+|.++.++
T Consensus 56 -~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdek-Pa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 56 -VDGL-LANPDIDIVFDATSAKAHARHARLLAELGKIVIDLT-PAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred -HHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEEECC-ccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 1111 001378999999999999999999999999766655 3336799999999665542 4689999999999988
Q ss_pred chhHHHhhhcceeEEEEEEEeeccC
Q 019445 164 PLAKVIHDKFGIVEGLMTTVHSITA 188 (341)
Q Consensus 164 pllk~L~~~fgi~~~~ittv~a~s~ 188 (341)
-.++.+++...+ ..++++++.|+
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 888888876644 45567776653
No 46
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.06 E-value=5.1e-10 Score=98.88 Aligned_cols=113 Identities=16% Similarity=0.249 Sum_probs=76.1
Q ss_pred hHHHhhh-cceeEEEEEEEeeccCccee------------eeCCCCCCcccccccccccccccCC-hhH------HHHHH
Q 019445 166 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSMKDWRGGRAASFNIIPSSTG-AAK------AVGKV 225 (341)
Q Consensus 166 lk~L~~~-fgi~~~~ittv~a~s~~~~~------------~d~~s~~~~~~gr~~~~niiP~~~g-~~~------~~~~~ 225 (341)
|+||+++ +++++..+++++++||.++- +.+..-+.......+++|++||..+ ..+ ++-+.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 5678887 99999999999999998652 1222122334456788999999976 221 11111
Q ss_pred hhh------hcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC--ccccccc
Q 019445 226 LPA------LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG--KLKGILG 280 (341)
Q Consensus 226 lpe------l~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~--~~~~il~ 280 (341)
+-| ....++++|+|||++|||+.++|++++ .+..++.++++.+|+. +|+.+..
T Consensus 81 ~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~~~~~V~~~~ 141 (184)
T PF02774_consen 81 IAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKGPEPFVRVDP 141 (184)
T ss_dssp HHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTSTTEEEEESS
T ss_pred hccccceeeccccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCCCCcEEEEcC
Confidence 111 111578899999999999999999996 3455666666666653 6665553
No 47
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.80 E-value=6.5e-08 Score=92.17 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=63.9
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
.++||||+|+|.+|+.+++.+.++|++||+++.+.. +.+... ...+ ++..
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~------~~~~-----------------------v~~~ 51 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD------TETP-----------------------VYAV 51 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh------hcCC-----------------------cccc
Confidence 468999999999999999999999999999998872 211110 0000 0000
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
.+.+.+ ..++|+|+.|+|.....+.+..++++|.-+|+
T Consensus 52 ~d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~NVV~ 89 (324)
T TIGR01921 52 ADDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFANTVD 89 (324)
T ss_pred CCHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCCCEEE
Confidence 011111 24799999999999999999999999987665
No 48
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.77 E-value=2.9e-08 Score=81.49 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=73.5
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCC-ChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI-STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~-~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
|+||+|+ |++|+.+++.+.++|+++++++.+... .++... ..+++.. .+ ++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~------~~~~~~~----------~~--------~~~~~ 56 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS------EAGPHLK----------GE--------VVLEL 56 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH------HHCcccc----------cc--------ccccc
Confidence 6899998 999999999999999999999955311 111111 1121111 00 01111
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHH---HHHhCCCcEEEecCCCC---CCCeeeeccCccccC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAA---AHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK 146 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~---~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~ 146 (341)
+.+ .|...++|+||.|+|.....+.+. +.++.|+.++++|++.+ +.|..++++|+++++
T Consensus 57 ~~~--~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 57 EPE--DFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred ccC--ChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 222 233358999999999998887543 33578887888887765 467777888876553
No 49
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.60 E-value=1.6e-07 Score=87.96 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV 79 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i 79 (341)
|+.|.++||||+|+|+||+.+++.|.+ .++++++++.++..+. ... +...+|..
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~--a~~---~a~~~g~~-------------------- 55 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQR--HAD---FIWGLRRP-------------------- 55 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHH--HHH---HHHhcCCC--------------------
Confidence 888888999999999999999999987 5889999998862211 110 00111100
Q ss_pred EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
..+. +++++. .++|+|++|+|.....+.+.+++++|..+++.|
T Consensus 56 ~~~~--~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 56 PPVV--PLDQLA---THADIVVEAAPASVLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred cccC--CHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCCcEEEec
Confidence 0011 233331 368999999999999999999999998777665
No 50
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=5e-07 Score=84.35 Aligned_cols=91 Identities=27% Similarity=0.335 Sum_probs=64.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
+||||+|+|++|+.+++.+.++|+++++++.......+.... .+. ..+.++. +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---------~~~----------------~~~~~~~--d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---------ALG----------------EAVRVVS--S 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---------hhc----------------cCCeeeC--C
Confidence 699999999999999999999999999998754111111000 000 0012222 3
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.+++ ..++|+|++|||+....+.+.+++++|+.+++.|
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s 92 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCAVIS 92 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3333 2478999999999999999999999998877665
No 51
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.38 E-value=3.2e-07 Score=75.82 Aligned_cols=94 Identities=28% Similarity=0.295 Sum_probs=61.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCC---hhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIS---TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~---~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
|||+|+|+ |++|+.+++.+.++|+++|+++.++..+ ++....+.... ...++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----------------------~~~~~v~ 58 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----------------------PLGVPVT 58 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----------------------T-SSBEB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----------------------Ccccccc
Confidence 59999999 9999999999999999999999887331 11111111000 0112222
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
. +.+++ ...+|+++++|-.....+.++.+++.|...|+-+
T Consensus 59 ~--~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 D--DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S---HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-
T ss_pred h--hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCCEEEEC
Confidence 1 33332 2358999999988888888898999998766654
No 52
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.26 E-value=2.9e-06 Score=79.26 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=65.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
+||+|+|+ |++|+.+++.+.++|+++|+++.++. +.+.. ..+ .+.+. + +. ...+.++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~--~~~~~-~---------~~--~~gv~~~~-- 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTD--AGELA-G---------IG--KVGVPVTD-- 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCC--HHHhc-C---------cC--cCCceeeC--
Confidence 69999996 99999999999999999999998841 11100 000 00000 0 00 00122222
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
+++++ ...+|+|++||+.....+.+..++++|..+|+-+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 33333 1368999999999999999999999998777655
No 53
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.25 E-value=5.7e-06 Score=76.03 Aligned_cols=100 Identities=27% Similarity=0.292 Sum_probs=68.3
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||+|+|+ ||+|++++|++.+.|+++|++.-+...+.. .. +-.|.+. ..+...+.+..
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~-----~g--~d~ge~~------------g~~~~gv~v~~- 61 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS-----LG--SDAGELA------------GLGLLGVPVTD- 61 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc-----cc--cchhhhc------------cccccCceeec-
Confidence 579999999 999999999999999999999987622110 00 0001111 01111233332
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
++... ..++||++|.|-...+.+.++.+++.|.+.|+-|.-
T Consensus 62 -~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 62 -DLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred -chhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence 11111 347899999999999999999999999888887643
No 54
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.14 E-value=7.1e-06 Score=75.94 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=65.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
.+||||+|+|.||+.+++.|... +.+++++|+++..+. .. .+. . . .++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~--~~----------~~~-~--------------~-~~~~~ 53 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL--PP----------ALA-G--------------R-VALLD 53 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH--HH----------Hhh-c--------------c-CcccC
Confidence 57999999999999999998764 459999998762111 00 011 0 0 11111
Q ss_pred cCCCCCC-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445 84 FRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 84 ~~~~~~~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa 128 (341)
+++++ . ..+|+|+||.++..-++++++.|++|+..+++|-
T Consensus 54 --~l~~ll~---~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~Sv 94 (267)
T PRK13301 54 --GLPGLLA---WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSA 94 (267)
T ss_pred --CHHHHhh---cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEECh
Confidence 33442 2 3789999999999999999999999999999983
No 55
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.13 E-value=6.1e-06 Score=76.71 Aligned_cols=89 Identities=26% Similarity=0.271 Sum_probs=62.8
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
|+||+|+|+ |++|+.+++.+.++|+++++++.+...+... . . ..+ .+..+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~---~----~~~------------------~i~~~~- 52 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--G---Q----GAL------------------GVAITD- 52 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--c---c----CCC------------------CccccC-
Confidence 369999999 9999999999999999999999886221100 0 0 000 011111
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
+.+++ ..++|+|+++|+.....+.+..++++|+.+|+-
T Consensus 53 -dl~~l---l~~~DvVid~t~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 53 -DLEAV---LADADVLIDFTTPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEE
Confidence 23332 126899999999888899999999999977654
No 56
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.04 E-value=9.6e-06 Score=65.78 Aligned_cols=93 Identities=30% Similarity=0.461 Sum_probs=64.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcC-CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
+||||+|+|.+|+..++.+.++ |++++++|.++. .+..... ... |. +..+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~--~~~~~~~---~~~---~~------------------~~~~~-- 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD--PERAEAF---AEK---YG------------------IPVYT-- 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS--HHHHHHH---HHH---TT------------------SEEES--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC--HHHHHHH---HHH---hc------------------ccchh--
Confidence 5999999999999999888877 899999999872 2211110 000 00 11121
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.+++ ++..++|+|+.|||.....+.+..++++|. .|.+--|
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 22222 112479999999999999999999999998 4555544
No 57
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.01 E-value=1.8e-05 Score=73.90 Aligned_cols=90 Identities=24% Similarity=0.324 Sum_probs=62.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
+||||+|+|++|+.+++.+.+.+ +++++++.++. .+....+. .. +. ...+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~--~~~a~~~a---~~---~~------------------~~~~~-- 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN--LEKAENLA---SK---TG------------------AKACL-- 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC--HHHHHHHH---Hh---cC------------------CeeEC--
Confidence 59999999999999999998764 79999998872 21111100 00 00 01111
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
+.+++. .++|+|++|++.....+.+...+++|..++++|
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence 233331 378999999999999999999999998777765
No 58
>PRK11579 putative oxidoreductase; Provisional
Probab=97.96 E-value=3.2e-05 Score=74.81 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=62.9
Q ss_pred ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
++||||+|+|.+|+. .++.+...|+++|++|.|.. .+..+ . .+. . ...+.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~-~----------------~~~~~- 54 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD--ATKVK------A---DWP-T----------------VTVVS- 54 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC--HHHHH------h---hCC-C----------------CceeC-
Confidence 589999999999984 67888888999999999862 22211 0 011 0 01111
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.+++ ....++|+|+.|||+....+.+.+++++|. .|.+--|
T Consensus 55 -~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 55 -EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 22222 112478999999999999999999999996 3544434
No 59
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.94 E-value=2.4e-05 Score=70.18 Aligned_cols=92 Identities=27% Similarity=0.380 Sum_probs=66.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
++|||+|+|.||..+++++.+.+ ++|++++.|...+. .-.+. .. +.+... .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~---~~------------------~~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELE---AS------------------VGRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHH---hh------------------cCCCcc-----c
Confidence 47999999999999999998763 69999999873221 11110 00 001111 0
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.+++ ..++|+++||.++..-+++++++|++|...+++|--
T Consensus 53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence 23332 248999999999999999999999999999998853
No 60
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.86 E-value=3.6e-05 Score=74.49 Aligned_cols=34 Identities=35% Similarity=0.689 Sum_probs=30.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~ 39 (341)
++||||+|+|.+|+.++++|.+++ +++|++|.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 589999999999999999998763 6999999885
No 61
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=0.00015 Score=64.05 Aligned_cols=134 Identities=21% Similarity=0.292 Sum_probs=84.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC-CCcEEEEee--CCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVN--DPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~-p~~elv~i~--~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
+.||+|+|.|.||--|+--+++| ..+|..+.. |+..|+-..+.-|....+|--.. + + .
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~---------------~--l--l 64 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVI---------------G--L--L 64 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHH---------------H--H--H
Confidence 57999999999999777666666 345554443 33344422222223333321110 0 0 0
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccC-ccccCC-CCcEEeCCCCccc
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN-EKEYKP-ELDIVSNASCTTN 160 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn-~~~~~~-~~~iIsnp~C~tt 160 (341)
. -|+ ..++|+||++|..+...+.++++.++|.+-+||+.. +--|-+|+-+| ++..+. +-+.| -|-..
T Consensus 65 ~--~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~idltpa-aigp~vvp~~n~~eh~~a~nvnmv---tcggq 133 (310)
T COG4569 65 N--MPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPA-AIGPYVVPVVNLEEHVDALNVNMV---TCGGQ 133 (310)
T ss_pred h--CCC-----CCCcceEEeccccchhhcchHhHHhcCCceeecchh-ccCCeeccccchHHhcCCCCcceE---eecCc
Confidence 0 122 247899999999999999999999999999999743 22477888888 444442 34555 55556
Q ss_pred eecchhHHH
Q 019445 161 CLAPLAKVI 169 (341)
Q Consensus 161 ~Lapllk~L 169 (341)
+-.|++...
T Consensus 134 atipiv~av 142 (310)
T COG4569 134 ATIPIVAAV 142 (310)
T ss_pred ccchhhhhh
Confidence 666766553
No 62
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.75 E-value=0.0001 Score=69.15 Aligned_cols=97 Identities=25% Similarity=0.180 Sum_probs=66.7
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
.+||+|+|+ |++|+++++.+.+ ++++||+..++..+++... +.+.|..++++..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~~ 65 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVGP 65 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeecC
Confidence 489999999 9999999999999 8999999887633322110 0111222334311
Q ss_pred CCCCCCC--ccCCCcc-EEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 85 RNPEEIP--WAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 85 ~~~~~~~--w~~~~~D-vV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.|.++.- -....+| |++|-|-.....+.++.+++.|++.|+-|
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGT 111 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGT 111 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 1222210 0012578 99999999999999999999999988866
No 63
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.68 E-value=0.00013 Score=69.81 Aligned_cols=96 Identities=26% Similarity=0.274 Sum_probs=63.5
Q ss_pred CCceeEEEEccC-HHHHHHHHHHHcCCC-cEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445 4 DKKIKIGINGFG-RIGRLVARVALQRDD-VELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA 80 (341)
Q Consensus 4 ~~~irV~I~G~G-~iG~~llr~l~~~p~-~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~ 80 (341)
|+++||||+|+| +.++..++.+.+.++ ++++++.|+.... +..+..+... .
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~--------------------------~ 54 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA--------------------------K 54 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC--------------------------c
Confidence 367999999996 555679999999887 7999998873222 2222111110 0
Q ss_pred EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
.+. +.+++ ....++|+|+-|||.....+.+.+++++|+. |.+--|
T Consensus 55 ~~~--~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGkh-Vl~EKP 99 (342)
T COG0673 55 AYT--DLEEL-LADPDIDAVYIATPNALHAELALAALEAGKH-VLCEKP 99 (342)
T ss_pred ccC--CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCCE-EEEcCC
Confidence 111 12221 0123689999999999999999999999974 444433
No 64
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.58 E-value=0.00015 Score=72.34 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=57.0
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEEC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG 75 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~ 75 (341)
+++||||+|+|.+|+.++++|.+|+ ++++++|.++..... . .+. ..
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--------~----~~~-------------~~ 56 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--------R----GVD-------------LP 56 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--------c----CCC-------------Cc
Confidence 5699999999999999999997764 689999987621110 0 000 00
Q ss_pred CEEEEEEecCCCCCCCccCCCccEEEecCCC-ccCHHHHHHHHhCCCc
Q 019445 76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAK 122 (341)
Q Consensus 76 g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~-~~s~~~~~~~l~~G~k 122 (341)
+ ..++. +++++ ..+.++|+|++|||. ..+.+++.+++++|..
T Consensus 57 ~--~~~~~--d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gkh 99 (426)
T PRK06349 57 G--ILLTT--DPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGKH 99 (426)
T ss_pred c--cceeC--CHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCCe
Confidence 0 00111 22222 112478999999975 3457888899999963
No 65
>PRK10206 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.00028 Score=68.39 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=60.2
Q ss_pred ceeEEEEccCHHHH-HHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGR-LVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~-~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
|+||||+|+|.+++ ..++.+.. .++++|++|.|+.......+ ..++. +.++.
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~------~~~~~--------------------~~~~~ 54 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------PIYSH--------------------IHFTS 54 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH------HhcCC--------------------CcccC
Confidence 47999999999875 45676655 46899999998732111111 11110 01111
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus 55 --~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (344)
T PRK10206 55 --DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP 96 (344)
T ss_pred --CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence 12222 112478999999999999999999999995 4555444
No 66
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.00053 Score=65.39 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=68.8
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK 77 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~ 77 (341)
|++.+.+|.||+|+|++++.++|.|..-| +.+|++|.+++... ...|.-.++ . +
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~--------------------~-~-- 57 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI--------------------P-N-- 57 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC--------------------C-C--
Confidence 67778899999999999999999998888 89999999983322 222211111 0 0
Q ss_pred EEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445 78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa 128 (341)
.+++. ..+++- ++..+|+|..++|+-...+++..++..|.. |.+--
T Consensus 58 -~k~y~--syEeLa-kd~~vDvVyi~~~~~qH~evv~l~l~~~K~-VL~EK 103 (351)
T KOG2741|consen 58 -PKAYG--SYEELA-KDPEVDVVYISTPNPQHYEVVMLALNKGKH-VLCEK 103 (351)
T ss_pred -Ccccc--CHHHHh-cCCCcCEEEeCCCCccHHHHHHHHHHcCCc-EEecc
Confidence 01111 111111 134789999999999999999999998864 54443
No 67
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.40 E-value=0.00024 Score=68.70 Aligned_cols=105 Identities=25% Similarity=0.289 Sum_probs=60.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCCh-----hhhhhhcccccccCcccCceeeecCCcc
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFIST-----DYMTYMFKYDSVHGQWKHNELKVKDEKT 71 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~-----~~~a~ll~~ds~~g~~~~~~v~~~~~~~ 71 (341)
++||+|.|||-+|+.++|+|.++. +++|++|.+.+... -....++.+-...+... .
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~ 71 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N 71 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence 589999999999999999987631 48899998752110 00001111100000000 0
Q ss_pred eEECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 72 LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 72 l~i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
+.-+ ... ...+++++ +....+|+++++++.....+...+++++|+.+|.
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt 120 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT 120 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence 0000 000 00012221 1124789999999988888999999999986443
No 68
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.32 E-value=0.00045 Score=64.52 Aligned_cols=93 Identities=24% Similarity=0.197 Sum_probs=61.5
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe-eCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe-
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG- 83 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i-~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~- 83 (341)
+||.|+|+ |++|+++++++.+ +++|||+. -+.....+.... +.|..+++..
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~-------------------------~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAE-------------------------VAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhh-------------------------hcccceeeecc
Confidence 58999999 9999999999988 89999986 333111111100 1111233310
Q ss_pred ---cCCCCCCCccCCCcc-EEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 84 ---FRNPEEIPWAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 84 ---~~~~~~~~w~~~~~D-vV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
..+++.+. ...+| |++|-|-.....+.+..+++.|+..|+-+
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGT 100 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGT 100 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcC
Confidence 01222221 12378 99999999999999999999999877765
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.26 E-value=0.00017 Score=58.58 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=50.8
Q ss_pred ccCHHHHHHHHHHHcCC---CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCCC
Q 019445 13 GFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEE 89 (341)
Q Consensus 13 G~G~iG~~llr~l~~~p---~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~~ 89 (341)
|+|.+|+.++++|.+++ ++++++|.+++ .... .+.. ..+. .. .+ .. +.++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~------~~~~-~~~~-------~~-~~---------~~--~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLIS------KDWA-ASFP-------DE-AF---------TT--DLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEE------TTHH-HHHT-------HS-CE---------ES--SHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhh------hhhh-hhcc-------cc-cc---------cC--CHHH
Confidence 88999999999999875 79999999873 1100 0000 0000 00 00 00 2222
Q ss_pred C-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 90 I-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 90 ~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
+ .+ .++|+|+|||+.....++.+.++++|..+|.
T Consensus 54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt 88 (117)
T PF03447_consen 54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGKHVVT 88 (117)
T ss_dssp HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTCEEEE
T ss_pred HhcC--cCCCEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence 1 11 2689999999999999999999999985443
No 70
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.17 E-value=0.0011 Score=63.74 Aligned_cols=33 Identities=36% Similarity=0.663 Sum_probs=28.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcC-------CCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQR-------DDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~-------p~~elv~i~~~ 39 (341)
+||+|+|||.+|+.++++|.++ .++++++|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 3899999999999999999874 46899999875
No 71
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.07 E-value=0.0009 Score=72.98 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=64.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcE------------EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceE
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVE------------LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL 73 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~e------------lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~ 73 (341)
|.||+|+|+|++|+.+++.|.++|+++ ++.|.|.. .+....+. ..++...
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~--~~~a~~la---~~~~~~~------------- 630 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY--LKDAKETV---EGIENAE------------- 630 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC--HHHHHHHH---HhcCCCc-------------
Confidence 569999999999999999999998877 78888862 21111110 0010000
Q ss_pred ECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.+.+ .-.|.+++.=...++|+|+.|+|.....+.+..++++|+..++.|
T Consensus 631 ----~v~l-Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 631 ----AVQL-DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred ----eEEe-ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 0111 001222221001369999999999999999999999999777765
No 72
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.04 E-value=0.001 Score=64.43 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=28.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~ 39 (341)
+++|+|+|+|.+|+.++++|.++. +++|++|.++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 589999999999999999986542 4788999764
No 73
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0046 Score=59.25 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=58.6
Q ss_pred CCceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCChhhhhhhccccccc-CcccCceeeecCCcceE
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLL 73 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~ 73 (341)
|+++||+|+|+|-+|+.++|+|.++. ++++++|.+++..... .+|-.- ..|.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-----~~~~~~~~~~~------------- 62 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-----DLDLLNAEVWT------------- 62 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-----cccccchhhhe-------------
Confidence 36799999999999999999998752 4788888876221110 001000 0011
Q ss_pred ECCEEEEEEecCCCCCCCccCCCccEEEecCCC--ccCH--HHHHHHHhCCCcEEEecCC
Q 019445 74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV--FTDK--DKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~--~~s~--~~~~~~l~~G~k~V~lSa~ 129 (341)
-++..- .+ .++.+ ..+.|+|++++|. ..+. +...+++++|. -++|+.
T Consensus 63 ~~~~~~-----~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN 113 (333)
T COG0460 63 TDGALS-----LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN 113 (333)
T ss_pred eccccc-----cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence 000000 00 11212 3578999999997 2334 67788899987 455654
No 74
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0051 Score=58.82 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=65.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecC-C---cceEECCEEEE
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKD-E---KTLLFGEKPVA 80 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~-~---~~l~i~g~~i~ 80 (341)
+++|||++|+|.+|+-++-.+..-|.+++++|.+...+....+| |..++.-. ..+...+ . ..+. .|+ +.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~-~~~e~~~~s~~a~Ai~-aGK-i~ 88 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPKI-EAVEADDASKMADAIE-AGK-IA 88 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCcc-cccccchhhHHHHHHh-cCc-EE
Confidence 57999999999999999988888899999999998666644443 32221110 0010000 0 0011 122 22
Q ss_pred EEecCCCCCCCccCCCccEEEecCCCcc-CHHHHHHHHhCCCcEEE
Q 019445 81 VFGFRNPEEIPWAKTGAEYVVESTGVFT-DKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 81 v~~~~~~~~~~w~~~~~DvV~~at~~~~-s~~~~~~~l~~G~k~V~ 125 (341)
+.. |.+.+ .....+|+++++||+-. ..+.+..++..|...|-
T Consensus 89 vT~--D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM 131 (438)
T COG4091 89 VTD--DAELI-IANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM 131 (438)
T ss_pred Eec--chhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence 221 22222 22357899999999654 44556666776654443
No 75
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.66 E-value=0.0059 Score=59.16 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=58.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
++||||+|+ ++|+..++.+.+.| ++||++|.|...+. +.++.. || +..+.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~------~g---------------------i~~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR------LG---------------------VPLYC 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH------hC---------------------CCccC
Confidence 589999999 56999999999888 89999999973221 222221 11 00111
Q ss_pred cCCCCCCCccCCCccEEEe--cCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 84 FRNPEEIPWAKTGAEYVVE--STGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~--at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.+++. .+.++|+|.- ++|.+...+.+.+++++|.. |.+=-|
T Consensus 55 --~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkH-VL~EKP 98 (343)
T TIGR01761 55 --EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGIH-VLQEHP 98 (343)
T ss_pred --CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCCe-EEEcCC
Confidence 222221 1124566655 44678889999999999963 544333
No 76
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.62 E-value=0.003 Score=52.44 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=47.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
.+||+|+|+|++|..|.++|.+.. .+|+.+.+++... +..+.. +++.. +.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~------------------------~~~~~--~~-- 60 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF------------------------IGAGA--IL-- 60 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--------------------------TT--------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc------------------------ccccc--cc--
Confidence 479999999999999999998876 7899998763211 111110 11111 11
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 119 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~ 119 (341)
+++++ ...+|++|.|+|-..-.+.++++.+.
T Consensus 61 -~~~~~---~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 -DLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred -ccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence 23332 24789999999988666666665543
No 77
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.50 E-value=0.0083 Score=57.02 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=29.4
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCC-cEEEEeeCC
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDD-VELVAVNDP 39 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~-~elv~i~~~ 39 (341)
|+.++..||+|+|+|.+|+.+++.|..... .++. +.++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 778777799999999999999999987652 2444 4444
No 78
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0051 Score=60.27 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=64.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
|+||-|+|+|.+|+.+++.|.++.+.+| .|.|++.+. .+... ++..++.. .+.++ +.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdRs~~~--~~~i~--~~~~~~v~----------~~~vD-----~~--- 57 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEV-TIADRSKEK--CARIA--ELIGGKVE----------ALQVD-----AA--- 57 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceE-EEEeCCHHH--HHHHH--hhccccce----------eEEec-----cc---
Confidence 3589999999999999999999887665 455553222 11110 11111111 11111 00
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~ 130 (341)
+.+.+.--..+.|+||.|.|.+......+.+++.|+..+|+|...
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCC
Confidence 111110002366999999999999999999999999999988643
No 79
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.45 E-value=0.0042 Score=54.46 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=64.8
Q ss_pred CceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 5 KKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
.+.+|.|+|+|.+|+.++..-+. +.+++++++-|. +++ .-|+.. + + +++..
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~----------~VG~~~-~-------------~--v~V~~ 134 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPD----------KVGTKI-G-------------D--VPVYD 134 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHH----------HhCccc-C-------------C--eeeec
Confidence 45799999999999998876544 557999999886 221 122222 1 1 22221
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
-.+.+..- ...++|+++.|.|...+.+.+..++++|+|.+.=-+|
T Consensus 135 ~d~le~~v-~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 135 LDDLEKFV-KKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred hHHHHHHH-HhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 11222210 1248999999999999999999999999997764444
No 80
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.39 E-value=0.0082 Score=54.10 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=60.6
Q ss_pred ceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+.||+|+|+|.+|+.+++.+. ..+.++++++.|. +.+. .+.. ++|..+ ...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~----------~~~~--------------i~g~~v--~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEK----------IGTK--------------IGGIPV--YHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhh----------cCCE--------------eCCeEE--cCH
Confidence 479999999999999998643 3456999999875 1111 0100 111111 110
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
.+.+++ ....++|+|+.|+|.....+.+...+++|.+.|.--.|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 112221 11246999999999988888888889999876664444
No 81
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.23 E-value=0.0068 Score=47.55 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=59.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
+.||+|+|+|..|+.++...+....++++++.|. +++. .| -.++| ++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~----------~G--------------~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEK----------IG--------------KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTT----------TT--------------SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCc----------cC--------------cEECC--EEeec--
Confidence 4699999999999988765555556888888775 1110 01 11223 44452
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
+.+++.=.. ++|+.+.|.|.....+.+.+++++|.|.++.-
T Consensus 53 ~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nf 93 (96)
T PF02629_consen 53 SMDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVNF 93 (96)
T ss_dssp SHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEE
T ss_pred cHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 111111001 48999999999999999999999999987643
No 82
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.17 E-value=0.027 Score=51.44 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=30.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+.+||+|.|||.+|+.+++.|.+. .+++++|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 457999999999999999999887 4999999886
No 83
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.04 E-value=0.014 Score=53.25 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=24.9
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCC--CcE-EEEee
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRD--DVE-LVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p--~~e-lv~i~ 37 (341)
.++||+|+|+|.+|+.+++.+.+++ .++ ++..+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~ 38 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN 38 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEEC
Confidence 3579999999999999999887653 354 44443
No 84
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.03 E-value=0.011 Score=45.87 Aligned_cols=90 Identities=24% Similarity=0.244 Sum_probs=50.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
||||+|+|.+|..+++-|.++. .-++..++++ +.+...++. ..++ +.++..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~---~~~~---------------------~~~~~~- 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA---KEYG---------------------VQATAD- 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH---HHCT---------------------TEEESE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH---Hhhc---------------------cccccC-
Confidence 7999999999999999998874 2455555454 333222221 1111 000100
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHH--HhCCCcEEEec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH--LKGGAKKVVIS 127 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~--l~~G~k~V~lS 127 (341)
+..+. ....|+||.|.+...-.+.+..+ ...+.-.|.+.
T Consensus 54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 11111 12689999999998887777665 55666344443
No 85
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.00 E-value=0.027 Score=55.18 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=63.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceE--ECCEEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--FGEKPV 79 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~--i~g~~i 79 (341)
.||+|+|+ |-||+..++.+.++| .|+|+++... .+.+.+..+. ....+++. -+.+. ..|. ..+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCCc
Confidence 58999998 999999999999887 6999999843 2332222211 11112211 01000 0000 001011
Q ss_pred EEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 80 ~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
.++... ...++ -...++|+|+.+.+.+...+..-+++++|.+ |.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~-VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGKR-IAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCCc-EEE
Confidence 122211 11111 0123789999999999888888889999964 444
No 86
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.94 E-value=0.0097 Score=58.33 Aligned_cols=98 Identities=23% Similarity=0.328 Sum_probs=55.1
Q ss_pred EEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCC
Q 019445 9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE 88 (341)
Q Consensus 9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~ 88 (341)
|.|+|+|++|+.+++.|.+++.++-+.+.++ +.+....+..- -...++. .......|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~-~~~~~~~------------------~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEK-LLGDRVE------------------AVQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT---TTTTEE------------------EEE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhh-cccccee------------------EEEEecCCHH
Confidence 6899999999999999999987744455555 22222111100 0000111 0011111222
Q ss_pred CCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 89 ~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.+.=-..+.|+|+.|+|.+.....++.+++.|+.-||.|
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccc
Confidence 111002478999999999988889999999999888743
No 87
>PLN02700 homoserine dehydrogenase family protein
Probab=95.88 E-value=0.013 Score=57.41 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCceeEEEEccCHHHHHHHHHHHcCC--------CcEEEEeeCC
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~~p--------~~elv~i~~~ 39 (341)
|++++|+|+|+|-||+.|+++|.+.. ++.+++|.+.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 46799999999999999999986532 3678888774
No 88
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.77 E-value=0.011 Score=51.22 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=26.9
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|.|.|+ |++|+.+++.|.+++ .++.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 689999 999999999999988 898888754
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.75 E-value=0.0036 Score=56.63 Aligned_cols=95 Identities=24% Similarity=0.259 Sum_probs=55.2
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
|.|.|+ |.+|+.+++.|.. +.+++.++... .+ +..+..|+ . .| - .+.. ..-.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~-~~-~~~~~~l~--~-~g----~--------~vv~-------~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRD-PS-SDRAQQLQ--A-LG----A--------EVVE-------ADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESS-SH-HHHHHHHH--H-TT----T--------EEEE-------S-TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEec-cc-hhhhhhhh--c-cc----c--------eEee-------cccCCH
Confidence 689999 9999999999998 56898888764 21 11111111 0 00 0 0000 000122
Q ss_pred CCCCccCCCccEEEecCCCcc------CHHHHHHHHhCCCcEEEecC
Q 019445 88 EEIPWAKTGAEYVVESTGVFT------DKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~------s~~~~~~~l~~G~k~V~lSa 128 (341)
+.+.=...++|.||.+++... ....+..+.++|+|.++.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 222111359999999999542 23455667788999998764
No 90
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.72 E-value=0.038 Score=52.49 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
||.|.|+ |++|+.+++.|.++. .++.++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 8999999 999999999999876 67777753
No 91
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=95.64 E-value=0.062 Score=47.02 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=27.4
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++.+-|+|+ |..|+.+++.+.+.|.|.-|.+-
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i 50 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAI 50 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEE
Confidence 3468999999 99999999999999988544443
No 92
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.53 E-value=0.025 Score=52.44 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=24.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~ 39 (341)
|+||+|+|+|.+|..+++.|.+.. ....+.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 468999999999999999887653 1223345554
No 93
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.53 E-value=0.072 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=29.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+||+|.|||.+|+.+++.|.+.. ..+|+|.|.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~ 55 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDP 55 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcC
Confidence 479999999999999999999874 788999986
No 94
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.35 E-value=0.087 Score=46.38 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=27.7
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|||||+|+ |.+|.++++-+..+. -|+++|.-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeC
Confidence 48999999 999999999888886 688899753
No 95
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.33 E-value=0.065 Score=43.60 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=54.3
Q ss_pred eEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 8 KIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 8 rV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
+|||+|+ +..|+.+++.|.++. +++.+||-. ++.. .|. +.+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~i-------------------~G~--~~y~ 47 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGEI-------------------LGI--KCYP 47 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSEE-------------------TTE--E-BS
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceEE-------------------CcE--Eeec
Confidence 7999995 889999999999965 788899754 1111 121 1222
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
+.++++ ..+|+++.++|.....+..+++.+.|++.+.+-..
T Consensus 48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 122221 37899999999999999999999999998887543
No 96
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.27 E-value=0.11 Score=52.12 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=60.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCC-----Chhhhhhhccccccc-CcccCceeeecCCcceEECCEEEE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI-----STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEKPVA 80 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~-----~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~~i~ 80 (341)
.||+|-|||.+|+.+++.|.+.. ..|++|.|.+. ++=....|+++-... +... + ..+. . + ..
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-~---~~~~----~-~--~~ 300 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-E---YAEE----F-G--AE 300 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-h---hhhh----c-C--Ce
Confidence 69999999999999999998875 89999988411 111122222221111 1111 0 0000 0 0 00
Q ss_pred EEecCCCCCCCccCCCccEEEecCCC-ccCHHHHHHHHhCCCcEEEe
Q 019445 81 VFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 81 v~~~~~~~~~~w~~~~~DvV~~at~~-~~s~~~~~~~l~~G~k~V~l 126 (341)
. .+++++ | ..++||.+.|+.. -.+.+.+.++.+.+||.|+=
T Consensus 301 ~---i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvE 342 (445)
T PRK09414 301 Y---LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVKAVAE 342 (445)
T ss_pred e---cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEc
Confidence 1 123333 5 3589999999874 44677788887778876653
No 97
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.23 E-value=0.12 Score=49.43 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD 53 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d 53 (341)
|.-+++.+|.|-|+ ||||..+++.|+.+.+ ++.+-.....+.+...||.+++
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcc
Confidence 44434579999999 9999999999999985 4444433224445555665554
No 98
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.97 E-value=0.059 Score=51.64 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+++| ||+|+|+|.+|..+.+.|..+. .++..++
T Consensus 1 ~~~~m--~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~ 34 (328)
T PRK14618 1 MHHGM--RVAVLGAGAWGTALAVLAASKG-VPVRLWA 34 (328)
T ss_pred CCCCC--eEEEECcCHHHHHHHHHHHHCC-CeEEEEe
Confidence 77754 8999999999999999998764 4554443
No 99
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.94 E-value=0.19 Score=46.70 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=60.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCC--------ChhhhhhhcccccccCc-ccCceeeecCCcceEECCE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEK 77 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~--------~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~ 77 (341)
.||+|-|||.+|+.+++.|.+.. ..+++|.|... +.+.+..++.++...+. .. . ... .+.+
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~-~---~~~----~~~~- 108 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS-E---YAK----KYGT- 108 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH-H---Hhh----cCCC-
Confidence 69999999999999999998875 89999998521 11222222222221111 00 0 000 0001
Q ss_pred EEEEEecCCCCCCCccCCCccEEEecCC-CccCHHHHHHHHhCCCcEEE
Q 019445 78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~-~~~s~~~~~~~l~~G~k~V~ 125 (341)
.... +++++ | ..++||.+-|.- .-.+.+.++++.+.+||.|+
T Consensus 109 -a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~ 151 (254)
T cd05313 109 -AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVA 151 (254)
T ss_pred -CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCEEEE
Confidence 1111 34443 5 358999987754 55577888877777887665
No 100
>PLN02256 arogenate dehydrogenase
Probab=94.83 E-value=0.066 Score=51.06 Aligned_cols=33 Identities=33% Similarity=0.706 Sum_probs=27.1
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.++||+|+|+|.+|+.+++.|.+.+ .++.++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~ 67 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR 67 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence 4579999999999999999998765 67776654
No 101
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.80 E-value=0.071 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=26.1
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
|+.. +.||||+|+|.+|+.++..++.+. ++++..
T Consensus 1 ~~~~-~~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~ 34 (286)
T PRK07819 1 MSDA-IQRVGVVGAGQMGAGIAEVCARAG-VDVLVF 34 (286)
T ss_pred CCCC-ccEEEEEcccHHHHHHHHHHHhCC-CEEEEE
Confidence 4443 348999999999999999988775 565444
No 102
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.67 E-value=0.061 Score=52.67 Aligned_cols=77 Identities=22% Similarity=0.293 Sum_probs=50.4
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+.||+|+|. |.||+.+.+.|.+....+|.++ |+ . |.. +.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~-~-----------d~~---~~------------------------ 43 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DP-A-----------DPG---SL------------------------ 43 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cC-C-----------ccc---cC------------------------
Confidence 469999999 9999999999986434665544 22 0 100 00
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHH------hCCCcEEEe
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL------KGGAKKVVI 126 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l------~~G~k~V~l 126 (341)
++++. ..++|+||.|+|.....+..+++. +.|+-+.|+
T Consensus 44 -~~~~~---v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDV 87 (370)
T PRK08818 44 -DPATL---LQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDV 87 (370)
T ss_pred -CHHHH---hcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEEC
Confidence 11111 237899999999999888777654 456633443
No 103
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.63 E-value=0.12 Score=48.44 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||+|+|.|.+|+.+.+.|.++. .++..+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence 7999999999999999998775 5665553
No 104
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=94.34 E-value=0.092 Score=52.40 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=62.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceE--ECCE-
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--FGEK- 77 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~--i~g~- 77 (341)
+.||+|+|+ |-||...++++.+||+ |+++++... ...+.++...+ ...+++. -+.+. +.|. ..+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~--~f~p~~v----~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVR--KFKPKLV----AVRNESLVDELKEALADLD 129 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHhhcCCC
Confidence 469999999 9999999999999875 999999765 33333222111 1111111 01000 0000 0000
Q ss_pred -EEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 78 -PVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 78 -~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
...++. +....++- ...++|+|+.+..-+....-.-.++++|.+ |.|.
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaGK~-VALA 179 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAGKD-IALA 179 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCCCc-EEEe
Confidence 011221 11111110 123689999999988777777788999954 5554
No 105
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.31 E-value=0.11 Score=46.53 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=25.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|++++|.|+|.+|..|.+.+..-. .|++..++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r 33 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR 33 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCC
Confidence 358999999999999999988754 466555443
No 106
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.10 E-value=0.13 Score=48.38 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=51.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+++|+|+|.|.||+.+.|.|.... .+.+...... ......+. .+.+-.. . ...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~-~~~~~~a~----------------------~lgv~d~-~--~~~ 56 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS-AATLKAAL----------------------ELGVIDE-L--TVA 56 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc-HHHHHHHh----------------------hcCcccc-c--ccc
Confidence 469999999999999999998754 3444333221 11000000 0101000 0 000
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHH---HhCCCcEEEec
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVIS 127 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~---l~~G~k~V~lS 127 (341)
...+. ..++|+||.|+|...+.+.+.++ ++.|+-+.|++
T Consensus 57 ~~~~~----~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 57 GLAEA----AAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred hhhhh----cccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecc
Confidence 00111 23679999999999888777654 45777555554
No 107
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.07 E-value=0.16 Score=48.19 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+||+|+|+|.+|..+.+.|.+.. .++..+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~ 30 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLW 30 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 48999999999999999998764 454333
No 108
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.07 E-value=0.096 Score=50.02 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=24.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|+|+|.+|+.+++.|..+. ..-+.+.++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r 210 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANR 210 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 68999999999999999998753 333455554
No 109
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.02 E-value=0.12 Score=49.08 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=25.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.||+|+|+|.+|+.+++.|.... .++..++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~ 182 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGA 182 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 58999999999999999998876 5655553
No 110
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.87 E-value=0.28 Score=46.74 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=24.2
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+++||+|+|+|.+|..+...|.+.. .++..+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~ 34 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFL 34 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence 4579999999999999999888753 344444
No 111
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.86 E-value=0.27 Score=47.13 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=24.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+||+|+|+|.+|..+...|.++. .++..+.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~ 32 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-ADVTLIG 32 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence 368999999999999999998875 4555543
No 112
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.84 E-value=0.22 Score=41.94 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=23.8
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i 36 (341)
+||+|+|+ |.+|..++-.|...+-. ||+-+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~ 32 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLI 32 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEe
Confidence 48999999 99999999988877643 44444
No 113
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.64 E-value=0.17 Score=42.54 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=25.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
..||+|+|+|.+|+.+++.|.++. .+.+.+.++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 468999999999999999998875 333455554
No 114
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.49 E-value=0.29 Score=46.71 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=25.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~ 37 (341)
+||+|+|+ |++|..++..|...+.. +|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 48999999 99999999999987643 566553
No 115
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.45 E-value=0.24 Score=42.23 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=47.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCc-ccCceeeecCCcceEECCEEEEEEecCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
||+|+|+|..|..++..|..+. .++ .+-.+ +.+....+-+... ... ++ + + .+.. .+.+. .|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V-~l~~~--~~~~~~~i~~~~~-n~~~~~-~-~------~l~~---~i~~t--~d 62 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEV-TLWGR--DEEQIEEINETRQ-NPKYLP-G-I------KLPE---NIKAT--TD 62 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEE-EEETS--CHHHHHHHHHHTS-ETTTST-T-S------BEET---TEEEE--SS
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEE-EEEec--cHHHHHHHHHhCC-CCCCCC-C-c------ccCc---ccccc--cC
Confidence 7999999999999999999887 333 44444 2232222211111 111 11 1 1 1111 13232 24
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHH
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAH 116 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~ 116 (341)
+++. ..++|+++.|+|.+..++.++++
T Consensus 63 l~~a---~~~ad~IiiavPs~~~~~~~~~l 89 (157)
T PF01210_consen 63 LEEA---LEDADIIIIAVPSQAHREVLEQL 89 (157)
T ss_dssp HHHH---HTT-SEEEE-S-GGGHHHHHHHH
T ss_pred HHHH---hCcccEEEecccHHHHHHHHHHH
Confidence 4332 24889999999999887777664
No 116
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.31 E-value=0.14 Score=47.38 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=24.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~ 39 (341)
||||+|+|.+|+.+++.|.+.. ..+.+.+.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 7999999999999999988754 2333455554
No 117
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.29 E-value=0.32 Score=46.12 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=23.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+||+|+|+|.+|..++..+..++..|++-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 599999999999999998887652255444
No 118
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.20 E-value=0.18 Score=54.46 Aligned_cols=35 Identities=11% Similarity=0.346 Sum_probs=29.0
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCC--------CcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p--------~~elv~i~~~ 39 (341)
++++|+|+|+|-+|+.++++|.++. ++++++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 4689999999999999999997542 4778888764
No 119
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.14 E-value=0.36 Score=44.58 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=55.4
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC---------C-CcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcce-E
Q 019445 6 KIKIGINGFGRIGRLVARVALQR---------D-DVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-L 73 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~---------p-~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l-~ 73 (341)
..||.|+|+|-+|.++++.|... + .++|+-+ |. ..+...+...+-+.+.-|+.+ .++-.+ .+ .
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~---ri~~ 85 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQAFYPADVGQNK-AIVLVN---RLNQ 85 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcccCChhHCCcHH-HHHHHH---HHHh
Confidence 57999999999999999999753 2 2344433 43 122222222222233345443 222110 01 0
Q ss_pred ECCEEEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC
Q 019445 74 FGEKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG 119 (341)
Q Consensus 74 i~g~~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~ 119 (341)
+++..+.... ..+++.. ..++|+|++|+....++....+.+..
T Consensus 86 ~~~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 86 AMGTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEG 129 (244)
T ss_pred ccCceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 1122222221 1122221 23789999999999988776555433
No 120
>PRK08507 prephenate dehydrogenase; Validated
Probab=93.02 E-value=0.31 Score=45.51 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=23.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCCC-cEEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDD-VELVAV 36 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~-~elv~i 36 (341)
||+|+|+|.+|+.+.+.|.+... .++...
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~ 31 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGY 31 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEE
Confidence 79999999999999999987642 355443
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.00 E-value=0.15 Score=48.14 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|+|+|+|++|+.+++.|..+. .++...+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~ 181 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGA 181 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998886 5665443
No 122
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.90 E-value=0.099 Score=56.30 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=29.3
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~ 39 (341)
++++|+|+|+|-+|+.++|+|.++. ++++++|.+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 4689999999999999999987542 4788999764
No 123
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.89 E-value=0.4 Score=47.51 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=53.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
.||-|+|+|-+|..+++.|.+++--+| .|..+.... +.++..+. +..++ +.+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i-~IaNRT~erA~~La~~~~------------------------~~~~~-l~el 232 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKI-TIANRTLERAEELAKKLG------------------------AEAVA-LEEL 232 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEE-EEEcCCHHHHHHHHHHhC------------------------Ceeec-HHHH
Confidence 579999999999999999999974444 444442222 33332211 11111 1110
Q ss_pred CCCCCCccCCCccEEEecCCCcc---CHHHHHHHHhCCCc--EEEecCC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFT---DKDKAAAHLKGGAK--KVVISAP 129 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~---s~~~~~~~l~~G~k--~V~lSa~ 129 (341)
++. ...+|+||.||+... +.+..+..++.-.+ .|||+.|
T Consensus 233 -~~~----l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 233 -LEA----LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred -HHh----hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 122 247899999988544 45666655543322 4777776
No 124
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.89 E-value=0.19 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
+||+|+|+|.+|..+++.|.+..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 47999999999999999998764
No 125
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.85 E-value=0.21 Score=48.98 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceeEEEEc-cCHHHHHHHHHHHcCCCcEE
Q 019445 6 KIKIGING-FGRIGRLVARVALQRDDVEL 33 (341)
Q Consensus 6 ~irV~I~G-~G~iG~~llr~l~~~p~~el 33 (341)
+.||+|+| .|.+|+.+.+.|..+. .++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V 125 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQV 125 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeE
Confidence 36899999 6999999999998764 443
No 126
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.73 E-value=0.38 Score=48.33 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred CceeEEEEcc----CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445 5 KKIKIGINGF----GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV 79 (341)
Q Consensus 5 ~~irV~I~G~----G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i 79 (341)
...+|+|+|+ |..|+.+++.|.++.. =+|..||-. ++..+ | +
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~------------~~~i~-------------------G--~ 52 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK------------AGEIL-------------------G--V 52 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC------------CCccC-------------------C--c
Confidence 3468999999 7789999999998762 267777632 11111 1 1
Q ss_pred EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCC
Q 019445 80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAP 129 (341)
Q Consensus 80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~ 129 (341)
+++. +.++++ ..+|+++.|+|.....+.++++.+.|+|.++ +|+-
T Consensus 53 ~~~~--sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~g 98 (447)
T TIGR02717 53 KAYP--SVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAG 98 (447)
T ss_pred cccC--CHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 1221 233343 3689999999999999999999999999775 4543
No 127
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.70 E-value=0.17 Score=44.21 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=26.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|||+|+|.||+++++.+..-. +++.+.+..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence 68999999999999999998775 787777543
No 128
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.67 E-value=0.33 Score=45.05 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.5
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|.|.|+ |++|+.+++.|.+.. .++.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence 4789999 999999999998864 56666653
No 129
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.63 E-value=0.32 Score=45.57 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=24.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCC---cEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~---~elv~i~~ 38 (341)
+||+|+|+|.+|..+++.|.+... .++..++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999886542 35555543
No 130
>PLN00016 RNA-binding protein; Provisional
Probab=92.47 E-value=0.38 Score=46.93 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=27.2
Q ss_pred ceeEEEE----cc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGIN----GF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~----G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+.||.|. |+ |++|+.|++.|.+.. .++.++..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 4689999 99 999999999998875 57777754
No 131
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.42 E-value=0.36 Score=43.89 Aligned_cols=100 Identities=26% Similarity=0.251 Sum_probs=54.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
+++.|+|+|+.|+.++|.|.+.. .+++.|-.. .+.....+. .. +. .. .+..++....+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d---~~~~~~~~~--~~---~~-~~-------~v~gd~t~~~~----- 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD---EERVEEFLA--DE---LD-TH-------VVIGDATDEDV----- 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC---HHHHHHHhh--hh---cc-eE-------EEEecCCCHHH-----
Confidence 48999999999999999999876 466666532 222111011 00 00 00 01111111111
Q ss_pred CCCCCccCCCccEEEecCCCccC-HHHHHHHHh-CCCcEEEecCCC
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTD-KDKAAAHLK-GGAKKVVISAPS 130 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s-~~~~~~~l~-~G~k~V~lSa~~ 130 (341)
.++.. ..++|+++-+|+.... .-.+..+++ -|.+.++.-+.+
T Consensus 59 L~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 59 LEEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred HHhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 11221 2478999999998543 334444444 588888766554
No 132
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.32 E-value=0.29 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
+||+++|+|.+|..+++.|.++.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 38999999999999999998764
No 133
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.27 E-value=0.45 Score=45.72 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|.+-.+.||+|+|+|.+|..++..+..+.-.+ +.+.|.
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 33333468999999999999988877665346 455554
No 134
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=92.22 E-value=0.18 Score=47.06 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.++|-|.|+|++|++.+|.|..+|.+|||+.-..
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 4789999999999999999999999999998776
No 135
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.20 E-value=1.1 Score=45.05 Aligned_cols=105 Identities=15% Similarity=0.291 Sum_probs=62.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhccccccc-CcccCceeeecCCcceEECCE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK 77 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~ 77 (341)
.||+|-|+|.+|..+++.|.+.. ..+++|.|.. .+.+.+..++.+-... |... . ..+ . ..+
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~---~~~---~-~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-E---YAK---H-SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-h---hhh---c-cCC-
Confidence 69999999999999999998875 8999999873 1122222222221111 1111 0 000 0 001
Q ss_pred EEEEEecCCCCCCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEEec
Q 019445 78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 78 ~i~v~~~~~~~~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.... +.++ .|. .++||.+-|. +...+.+.+..+++.|||.|+=.
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~Eg 352 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEG 352 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeEEEec
Confidence 1111 2233 374 5899998764 46668888888888999866533
No 136
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.18 E-value=0.92 Score=43.45 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
..||+|+|+|.+|..++-.|...+-+ ||+-+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~ 37 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVII 37 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 47999999999999999988887744 44433
No 137
>PLN02477 glutamate dehydrogenase
Probab=92.07 E-value=1.5 Score=43.64 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=29.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|-|||.+|+.++++|.+.. ..|++|.|.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~ 238 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI 238 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence 68999999999999999998875 899999986
No 138
>PRK07680 late competence protein ComER; Validated
Probab=92.02 E-value=0.24 Score=46.23 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=24.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc--EEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDV--ELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~--elv~i~~~ 39 (341)
||+|+|+|.+|..+++.|.+...+ +-+.+.++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 799999999999999998876422 22355554
No 139
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.01 E-value=0.3 Score=46.91 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=55.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
.+++|+|+|.+|+..++.+.....++.+.|.++..+. +.++..++ . ++. ..+..+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~--~---~~~----------------~~~~~~~-- 184 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ--S---KFN----------------TEIYVVN-- 184 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH--H---hcC----------------CcEEEeC--
Confidence 5899999999999999888765568888888763221 11111110 0 000 0111121
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa 128 (341)
+.++. ..++|+|+.|||.... ... ..++.|+.+.-+.+
T Consensus 185 ~~~~~---~~~aDiVi~aT~s~~p-~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 185 SADEA---IEEADIIVTVTNAKTP-VFS-EKLKKGVHINAVGS 222 (325)
T ss_pred CHHHH---HhcCCEEEEccCCCCc-chH-HhcCCCcEEEecCC
Confidence 22221 2478999999998743 344 67788885444444
No 140
>PLN02712 arogenate dehydrogenase
Probab=91.98 E-value=0.39 Score=50.77 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=26.3
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+++||||+|+|.+|+.+++.|.+.. .+|++++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~d 399 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYS 399 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEE
Confidence 3579999999999999999998765 5776554
No 141
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.96 E-value=0.29 Score=46.53 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=24.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+||+|+|+|.+|..+.+.|.... .++...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~ 33 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVW 33 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEE
Confidence 468999999999999999998765 455433
No 142
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.91 E-value=0.34 Score=46.52 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=54.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
+||+|+|+|..|-.|...|.++. ++.+-+ .+ .+.... +..+....+|- ..+..+. .+ ....
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~-r~----~~~~~~-i~~~~~N~~yL-p~i~lp~---------~l--~at~ 63 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWG-RD----EEIVAE-INETRENPKYL-PGILLPP---------NL--KATT 63 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEe-cC----HHHHHH-HHhcCcCcccc-CCccCCc---------cc--cccc
Confidence 58999999999999999998874 343322 22 121111 11111122222 1111111 11 1112
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHH---HHhCCCcEEEec
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAA---HLKGGAKKVVIS 127 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~---~l~~G~k~V~lS 127 (341)
|.++. ..++|+++.++|+..-++.+.+ ++..+++.|.+|
T Consensus 64 Dl~~a---~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 64 DLAEA---LDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred CHHHH---HhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 33332 2469999999999888777765 345566444433
No 143
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.81 E-value=0.33 Score=48.29 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|+|+|+|.+|+.+++.+.... .+++. .+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 48999999999999999988775 56544 443
No 144
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.69 E-value=0.39 Score=44.95 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
+||+++|+|.+|..+++.|.+..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCC
Confidence 58999999999999999998754
No 145
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.49 E-value=0.4 Score=46.49 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=53.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
+|.|+|+|.||...+.++...+--+++.+ |. +.+.++...++.. . ...++...-... . ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g-------~--------~~~~~~~~~~~~-~-~~ 230 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG-------A--------DVVVNPSEDDAG-A-EI 230 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC-------C--------eEeecCccccHH-H-HH
Confidence 79999999999988777776665566555 54 2222211111000 0 111110000000 0 00
Q ss_pred CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
.++.. -.++|+||||+|...+.+.+-.+++.|-+++.++-+
T Consensus 231 ~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 231 LELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 01100 137999999999766667777777777666665533
No 146
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.49 E-value=0.83 Score=43.61 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=22.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
||+|+|+|.+|..++-+|..++-+ ||+-+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~ 30 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLI 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 799999999999998888877644 44433
No 147
>PLN02688 pyrroline-5-carboxylate reductase
Probab=90.93 E-value=0.6 Score=43.14 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=24.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCC---cEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~---~elv~i~~~ 39 (341)
+||+++|+|.+|..+++.|.+... .+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 379999999999999999887542 255544344
No 148
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.91 E-value=0.71 Score=44.96 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCC-CcEEE
Q 019445 8 KIGINGFGRIGRLVARVALQRD-DVELV 34 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p-~~elv 34 (341)
||+|+|+|.||+.+.+.|..+. ++.+.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~ 29 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFII 29 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEE
Confidence 7999999999999999998764 34433
No 149
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.84 E-value=0.4 Score=39.88 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|-+||.++..|..+. ++-+.|.++
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 68999999999999999999885 543344444
No 150
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.80 E-value=0.59 Score=45.10 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=23.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
++|||+|+|.||+.+++.|...-.+++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 589999999999999999843223666554
No 151
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=90.77 E-value=0.47 Score=39.41 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=56.7
Q ss_pred EEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC-------cceEECCEEE
Q 019445 9 IGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE-------KTLLFGEKPV 79 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~-------~~l~i~g~~i 79 (341)
|+|.|+ |-||...++.+.+|| +|+|+++... ...+.+..+.+ ...+++. -..+. ..+...+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~--~f~p~~v----~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAR--EFKPKYV----VIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHH--HHT-SEE----EESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHHhhhcCCCC
Confidence 689999 999999999999998 6999999875 34433332211 1112211 00000 0000000111
Q ss_pred EEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 80 ~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
.++... ...++- ...++|+|+.+..-+...+-.-.++++|.+ +-|
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~-iaL 119 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAGKD-IAL 119 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTTSE-EEE
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCCCe-EEE
Confidence 222100 011110 013688888888888777777778888853 444
No 152
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.63 E-value=1.5 Score=41.95 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|+|+|.+|..+..++..++-.+ +.+.|.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 59999999999999998887765335 344444
No 153
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.59 E-value=0.39 Score=41.21 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=23.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|+|||++|+|.+|+.+++.|.++. +++.. .++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~-~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-YEVTV-YDR 32 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-TEEEE-EES
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-CeEEe-ecc
Confidence 369999999999999999999875 66644 444
No 154
>PRK06046 alanine dehydrogenase; Validated
Probab=90.42 E-value=0.61 Score=44.83 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=30.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
..+|||+|+|..|+..++.+...+.++.+.|.++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 4689999999999999999988788999999987
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=90.38 E-value=0.42 Score=45.99 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=29.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~ 40 (341)
..++||+|+|..|+..++.+.....++-+.|.+++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~ 162 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT 162 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 46899999999999999998877678888888873
No 156
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.26 E-value=0.68 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcC
Q 019445 6 KIKIGINGFGRIGRLVARVALQR 28 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~ 28 (341)
++||+|+|+|..|-.+...|.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc
Confidence 46899999999999999999865
No 157
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.10 E-value=0.55 Score=39.15 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p 29 (341)
||.|+|+|.+|.++++.|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999998765
No 158
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.09 E-value=1.3 Score=41.45 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=23.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||+|+|+|.+|..+...|.+.. .++..+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 7999999999999999988764 4555554
No 159
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.06 E-value=1.7 Score=43.68 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=55.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
.+||.|+|.|..|+.++|.|.++. .++ .++|......... ..+... . . +.+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~~~-------~~~~~~-------~--~-------i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEGLA-------AQPLLL-------E--G-------IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccchh-------hhhhhc-------c--C-------ceeecCc
Confidence 579999999999999999999876 444 4555322211000 000000 0 0 1111111
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~ 123 (341)
.+. .+| .++|+|+.+=|..-+...+.++.++|+++
T Consensus 62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~i 96 (448)
T COG0771 62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIEI 96 (448)
T ss_pred cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCcE
Confidence 122 333 48899999999888888889999999863
No 160
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.96 E-value=0.65 Score=41.83 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=22.4
Q ss_pred eEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGING-FGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G-~G~iG~~llr~l~~~p~~elv~i 36 (341)
||+|+| +|.+|..+.+.|.+.. .++...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 799998 6999999999998765 455433
No 161
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=89.85 E-value=0.47 Score=43.79 Aligned_cols=106 Identities=21% Similarity=0.308 Sum_probs=60.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC-----CChhhhhhhcccccccCc-ccCceeeecCCcceEECCEEEE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF-----ISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEKPVA 80 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~-----~~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~~i~ 80 (341)
.||+|-|||.+|+.+++.|.+.. ..+++|.|.. .++-....|+.+-..++. +. . .+. . ..++ ..
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~-~---~~~--~-~~~~--~~ 102 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVD-D---YPL--E-SPDG--AE 102 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHST-T---GTH--T-CSST--SE
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccc-c---ccc--c-cccc--ee
Confidence 68999999999999999999985 8999997752 112122222222111111 11 0 000 0 0000 01
Q ss_pred EEecCCCC-CCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEEec
Q 019445 81 VFGFRNPE-EIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 81 v~~~~~~~-~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.+ +.+ ++ | ..++||.+-|. +.-.+.+.++..++.|+|.|+=.
T Consensus 103 ~~---~~~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIveg 146 (244)
T PF00208_consen 103 YI---PNDDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEG 146 (244)
T ss_dssp EE---CHHCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEES
T ss_pred Ee---cccccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeC
Confidence 11 111 22 4 35899999986 56667788886778889877643
No 162
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.78 E-value=0.64 Score=46.28 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|+|+|+|.+|+.+++.|..++-.+++.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~ 211 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIAN 211 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999999999887523444443
No 163
>PRK06444 prephenate dehydrogenase; Provisional
Probab=89.62 E-value=0.59 Score=41.70 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcC
Q 019445 7 IKIGINGF-GRIGRLVARVALQR 28 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~ 28 (341)
+||+|+|. |.+|+.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 38999999 99999998876543
No 164
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.54 E-value=2.9 Score=40.04 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
+||+|+|+|.+|..++-+|.+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999998887665
No 165
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.36 E-value=1.2 Score=41.77 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+||+|+|+|.+|..+...|.++. .++..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEE
Confidence 37999999999999999998764 344444
No 166
>PLN00203 glutamyl-tRNA reductase
Probab=89.32 E-value=0.81 Score=46.89 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=24.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
..+|+|+|+|.+|+.+++.|..++--++..++
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n 297 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN 297 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 46899999999999999999887622444443
No 167
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.09 E-value=2.4 Score=42.56 Aligned_cols=102 Identities=16% Similarity=0.309 Sum_probs=58.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhcccccc-cCcccCceeeecCCcceEECCE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSV-HGQWKHNELKVKDEKTLLFGEK 77 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~-~g~~~~~~v~~~~~~~l~i~g~ 77 (341)
.||+|-|||.+|...++.|.+.. ..|++|.|.. .+.+.+.|+..+... .++.. + ... . . +
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~-~---~~~--~--~-g- 297 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR-E---YAE--K--Y-G- 297 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh-h---hHh--h--c-C-
Confidence 69999999999999999998875 8999998841 112222111111110 11111 0 000 0 0 1
Q ss_pred EEEEEecCCCCCCCccCCCccEEEecCC-CccCHHHHHHHHhCCCcEEE
Q 019445 78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~-~~~s~~~~~~~l~~G~k~V~ 125 (341)
.... +.++ .|. .++|+.|-|.- ...+.+.++++...|++.|.
T Consensus 298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~ 340 (444)
T PRK14031 298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVIAVS 340 (444)
T ss_pred -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCeEEE
Confidence 1111 2233 353 58999987755 44688888888777885443
No 168
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.04 E-value=2.7 Score=35.94 Aligned_cols=29 Identities=21% Similarity=0.055 Sum_probs=24.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||-|+|.|.+|...++.|++.. .+++-|
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 68999999999999999998764 455555
No 169
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.94 E-value=0.52 Score=45.15 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||++++|.+.... +++.+..
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~ 178 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQ 178 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence 58999999999999999998764 7776653
No 170
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.85 E-value=0.84 Score=45.53 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|+|+|+|.+|+.+++.|...+ ++-+.+.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999998765 432344444
No 171
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.81 E-value=0.53 Score=44.97 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|+||++++|.+..-. +++.+..
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcC-CEEEEEC
Confidence 68999999999999999997664 7776653
No 172
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.80 E-value=1.2 Score=42.57 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=23.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
.||+|+|+|.+|..++-.|...+-. ||+-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 5999999999999998888776533 45444
No 173
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.50 E-value=0.93 Score=45.26 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=23.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 48999999999999999998775 565443
No 174
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.49 E-value=1.8 Score=37.61 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=22.9
Q ss_pred eeEEEEccCH-HHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGR-IGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~-iG~~llr~l~~~p~~elv~i~ 37 (341)
.||.|+|+|. +|..+++.|.++. .++..++
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~ 75 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCH 75 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEE
Confidence 6899999986 5888999998875 4544443
No 175
>PRK14030 glutamate dehydrogenase; Provisional
Probab=88.49 E-value=3.1 Score=41.74 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=63.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~ 78 (341)
.||+|-|||.+|..+++.|.+.. ..|++|.|.. .+.+.+.+|+.+-..++... .. ... .+.+.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga- 299 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS- 299 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC-
Confidence 69999999999999999998875 8999987752 12222333444332222110 00 000 01111
Q ss_pred EEEEecCCCCCCCccCCCccEEEec-CCCccCHHHHHHHHhCCCcEEEe
Q 019445 79 VAVFGFRNPEEIPWAKTGAEYVVES-TGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 79 i~v~~~~~~~~~~w~~~~~DvV~~a-t~~~~s~~~~~~~l~~G~k~V~l 126 (341)
... +.+++ |. .++||.+-| ++...+.+.++++.+.+||.|+=
T Consensus 300 -~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~E 342 (445)
T PRK14030 300 -TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAE 342 (445)
T ss_pred -EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEe
Confidence 111 23333 53 589988866 45666888888888888987663
No 176
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.39 E-value=2.2 Score=38.17 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.||-|+|+|.+|...++.|.+.. .+++-|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 58999999999999999998875 5665554
No 177
>PRK05442 malate dehydrogenase; Provisional
Probab=88.30 E-value=2.7 Score=40.45 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.4
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQR 28 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~ 28 (341)
+.||+|+|+ |.+|..++-.|...
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 469999999 99999988777653
No 178
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=88.29 E-value=1.5 Score=41.03 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=26.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~ 39 (341)
+|||++|+|.+|+.+++-|.+.+ .-+-+.|.++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 58999999999999999998876 2244566665
No 179
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.19 E-value=0.77 Score=44.31 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=24.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.+|+.+++.|.... ++++...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~ 47 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGL 47 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEE
Confidence 58999999999999999998765 5665443
No 180
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.15 E-value=1.6 Score=39.09 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=49.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
.||.|+|.|.+|..-++.|++.. ..++-| ++.... .+..+. . . + .+.. +..+..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~-~l~~l~---~-~-----~--------~i~~------~~~~~~ 63 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELES-ELTLLA---E-Q-----G--------GITW------LARCFD 63 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCH-HHHHHH---H-c-----C--------CEEE------EeCCCC
Confidence 58999999999999999998876 455444 431221 111110 0 0 1 1111 111112
Q ss_pred CCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcE
Q 019445 87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKK 123 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~ 123 (341)
++.+ .++|+||-||+.. .....+..+.+.|+.+
T Consensus 64 ~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 64 ADIL----EGAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred HHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 2222 4789999999986 5556665555677643
No 181
>PRK07236 hypothetical protein; Provisional
Probab=88.14 E-value=0.69 Score=45.11 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=29.6
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|-+|++.+|.|+|+|.+|..++..|.++. ++++-+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E 36 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAG-WDVDVFE 36 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCC-CCEEEEe
Confidence 77788899999999999999999988875 6654443
No 182
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.05 E-value=0.66 Score=44.41 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=24.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|||+|+|.||++++|.+.... +++.+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALG-MKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEE
Confidence 68999999999999999987664 777665
No 183
>PLN02214 cinnamoyl-CoA reductase
Probab=88.00 E-value=2.7 Score=40.30 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+.+|.|.|+ |++|+.+++.|.++. .+++++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence 358999999 999999999999876 5666664
No 184
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.92 E-value=0.61 Score=41.12 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=22.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
|||+|+|.||+|..++-.+.++. ++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence 48999999999999998888886 777777
No 185
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.82 E-value=0.78 Score=44.46 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=24.3
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~ 37 (341)
..+|.|+|+ |.||++++|.|.++.. -+++.++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~ 188 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA 188 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc
Confidence 368999999 9999999999985422 2555554
No 186
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=87.53 E-value=1.9 Score=40.92 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=58.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
+-||-|.|. |.+|+.+++.|.+.+.-.+.+||-. .. ++... | ++.+.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~-~~---------~~~v~-------------------G--~~~y~- 55 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPG-KG---------GTTVL-------------------G--LPVFN- 55 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCC-CC---------CCeEe-------------------C--eeccC-
Confidence 468999999 9999999999987652244466532 00 11111 1 12221
Q ss_pred CCCCCCCccCCC--ccEEEecCCCccCHHHHHHHHhCCCcEE-EecCC
Q 019445 85 RNPEEIPWAKTG--AEYVVESTGVFTDKDKAAAHLKGGAKKV-VISAP 129 (341)
Q Consensus 85 ~~~~~~~w~~~~--~DvV~~at~~~~s~~~~~~~l~~G~k~V-~lSa~ 129 (341)
+.++++ .. +|+++.++|.....+.++++.++|+|.+ ++|+-
T Consensus 56 -sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 56 -TVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred -CHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 233343 23 8999999999999999999999999875 45643
No 187
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.47 E-value=2.8 Score=39.51 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=48.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
+|.|+|+|-+|...++++.... .+.+.+.+. +.+.+.. . +.+. .+ ++
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~------a-~~~~------------~i-----------~~ 193 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDG------A-TGYE------------VL-----------DP 193 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHh------h-hhcc------------cc-----------Ch
Confidence 6899999999999998887665 554444443 1111100 0 0000 01 11
Q ss_pred CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
.+. ...++|+||||+|.....+.+-+.++.|-+.+.+
T Consensus 194 ~~~--~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 194 EKD--PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred hhc--cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 100 0237899999999866556666666666654443
No 188
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.43 E-value=1.3 Score=43.37 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||.|+|+|.+|+.+++.+.... .+++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~ 196 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTIL 196 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEE
Confidence 57999999999999999998875 565554
No 189
>PRK08655 prephenate dehydrogenase; Provisional
Probab=87.42 E-value=1.3 Score=44.42 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=22.5
Q ss_pred eEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGING-FGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G-~G~iG~~llr~l~~~p~~elv~i 36 (341)
||+|+| +|.+|+.+++.|.+.. .++..+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~ 30 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVT 30 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEE
Confidence 799998 5999999999998765 455444
No 190
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=87.31 E-value=0.75 Score=44.24 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=23.8
Q ss_pred eeEEEEccCHHHHHHHHHHH-cCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~-~~p~~elv~i 36 (341)
.+|||+|+|+||++++|.+. ... +++.+.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fg-m~V~~~ 175 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFN-MPILYN 175 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCC-CEEEEE
Confidence 68999999999999999986 554 676543
No 191
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.26 E-value=0.98 Score=39.33 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p 29 (341)
||.|+|+|-+|.+++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999998765
No 192
>PRK07574 formate dehydrogenase; Provisional
Probab=87.07 E-value=0.79 Score=45.21 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=25.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|+||+.++|.|.... +++.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999998764 7776654
No 193
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=87.02 E-value=0.99 Score=44.29 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=61.9
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceEE--C--CE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLLF--G--EK 77 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~i--~--g~ 77 (341)
.||+|.|. |-||...+..+.+||+ |+++++... ...+.+..+.+ ...+++. -..+. ..+.- . +.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~~--~f~p~~v----~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQIL--EFRPKFV----AIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHH--HcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence 58999999 9999999999999875 999999875 33332222111 1111111 11000 00000 0 10
Q ss_pred EEEEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 78 PVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 78 ~i~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.+.++... ...++- ...++|+|+.|.--+....-.-.++++|.+ +-|.
T Consensus 75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~-iaLA 123 (389)
T TIGR00243 75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAGKT-IALA 123 (389)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCCCc-EEEe
Confidence 12222211 111110 013689999998887777777778899954 5554
No 194
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.01 E-value=0.81 Score=42.99 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=25.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
++||||+|+|++|..+++.|.++. +++.. .++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g-~~v~~-~d~ 33 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG-YSLVV-YDR 33 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC-CeEEE-EcC
Confidence 358999999999999999998764 56654 344
No 195
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=86.89 E-value=2 Score=40.36 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 11 INGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 11 I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|.|+ |++|+.+++.|++++++.-|.+.+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 6789 9999999999999875332334343
No 196
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.82 E-value=0.85 Score=43.91 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=25.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+.+.+.+.... +++.+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEC
Confidence 58999999999999999998775 7776663
No 197
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.76 E-value=3.4 Score=41.17 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+...+|.|+|+|.+|..+++.|+++. .+++.+ |.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~ 36 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE 36 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence 33478999999999999999999886 455444 44
No 198
>PLN02928 oxidoreductase family protein
Probab=86.71 E-value=0.85 Score=44.31 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=26.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+++++.|.... +++.+.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFG-VKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence 58999999999999999998775 7877664
No 199
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.65 E-value=2.7 Score=40.15 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
-+|.|+|+|-+|...++++.... . .++++... .+...++. + +|. ...++.+..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~-~~~~~~a~--~----lGa------------~~vi~~~~~------ 224 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS-PRSLSLAR--E----MGA------------DKLVNPQND------ 224 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC-HHHHHHHH--H----cCC------------cEEecCCcc------
Confidence 37999999999999998887764 4 34444322 11111111 1 110 011111000
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
+..++.-...++|+||+|+|...+.+.+-++++.|-+.+.+
T Consensus 225 ~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 225 DLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred cHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00010000125899999999765566666777777665554
No 200
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=86.62 E-value=1.8 Score=42.04 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=19.0
Q ss_pred eEEEEccCHHHHHHHHHHHcC
Q 019445 8 KIGINGFGRIGRLVARVALQR 28 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~ 28 (341)
||+|+|+|..|-.+...|..+
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999999764
No 201
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.47 E-value=1.6 Score=43.28 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|+|+|+|.+|+.+++.+.... .+++.+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc-CEEEEE
Confidence 58999999999999999988764 675554
No 202
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=86.47 E-value=0.98 Score=43.28 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.5
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+||-|.|+ |++|+.|++.|+++...+|+++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 48999999 99999999999876446888775
No 203
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.46 E-value=0.94 Score=45.07 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=26.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++||+|+|.|++|..+...|.++. +++..+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 368999999999999999998875 6766664
No 204
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.43 E-value=0.96 Score=42.29 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=24.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+.||+|+|+|++|..++..+..+. .+++.+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~ 32 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV 32 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence 358999999999999999998875 466555
No 205
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.23 E-value=1.3 Score=39.52 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..|++.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAG-ADVVVHY 37 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 66666679999999 999999999998876 3554433
No 206
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.16 E-value=1.2 Score=41.87 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||||+|+|.+|..+++.+..+. .+++..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~ 33 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLL 33 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 48999999999999999998875 566554
No 207
>PRK06436 glycerate dehydrogenase; Provisional
Probab=86.06 E-value=0.99 Score=43.02 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=24.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||++++|.+..-. +++.+.+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG-~~V~~~~ 152 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYT 152 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence 68999999999999999887553 7776664
No 208
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.55 E-value=1.1 Score=42.77 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=25.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+++++.|.... +++.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999998765 7776664
No 209
>PTZ00325 malate dehydrogenase; Provisional
Probab=85.51 E-value=6.3 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDD 30 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~ 30 (341)
|.||+|+|+ |.+|..+.-.|..++.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~ 33 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPH 33 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCC
Confidence 469999999 9999999988886553
No 210
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=85.34 E-value=1.1 Score=43.20 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.++||+|.|+||+.++|.+..-. ++|.+-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fg-m~v~y~ 175 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFG-MKVLYY 175 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCC-CEEEEE
Confidence 68999999999999999998543 666554
No 211
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=85.32 E-value=4.9 Score=39.66 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p 29 (341)
..||+|+|+ |.+|..++-.|....
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999999 999999998887654
No 212
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=85.28 E-value=2.6 Score=39.84 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=57.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
-||-|.|. |+.|..+++-+...+---+.+||-. .. ++..+ | ++.+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~-~~---------~~~v~-------------------G--~~~y~-- 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPG-KG---------GTTVL-------------------G--LPVFD-- 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCC-CC---------cceec-------------------C--eeccC--
Confidence 58999999 9999999998877652233334321 00 11111 1 12221
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCCC
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAPS 130 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~~ 130 (341)
+.++++..- ++|+++.+.|.....+.+.++.++|+|.++ +|+-+
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf 98 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVCITEGI 98 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 233443110 379999999999988999999999998764 55443
No 213
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.17 E-value=1.1 Score=43.22 Aligned_cols=29 Identities=45% Similarity=0.617 Sum_probs=24.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|||+|+|.||+.+++.|.... +++.+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~ 179 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFG-MRILYY 179 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence 68999999999999999998764 676554
No 214
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.08 E-value=1.2 Score=42.89 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++|||+|+|.||+.+++.|.... +++.+..
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence 48999999999999999998764 6776653
No 215
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.86 E-value=4.2 Score=40.29 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=50.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
.||.|+|.|.+|+.+++.|.+.. .++.+ .|..... +. . .+... . ... ..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g-~D~~~~~-----~~---~-~~~~~----------------~--~~~--~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG-VYVIG-VDKSLEA-----LQ---S-CPYIH----------------E--RYL--EN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC-CEEEE-EeCCccc-----cc---h-hHHHh----------------h--hhc--CC
Confidence 58999999999999999998876 45443 3431110 00 0 00000 0 000 01
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~ 123 (341)
++.+ ..++|++|-+.|.....+.+.+++++|+++
T Consensus 53 ~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~v 86 (418)
T PRK00683 53 AEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIPV 86 (418)
T ss_pred cHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCcE
Confidence 1221 126799999988777778888889999863
No 216
>PLN02602 lactate dehydrogenase
Probab=84.68 E-value=2.4 Score=41.29 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=23.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
.||+|+|+|.+|..++-.|...+-. ||+-+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~Li 68 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALV 68 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 5999999999999999888776533 34333
No 217
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.59 E-value=1.6 Score=41.34 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|..++..|.++. .+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~ 33 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG-LQVVLI 33 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence 48999999999999999998765 566555
No 218
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=84.50 E-value=4.4 Score=39.12 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCceeEEEEccCHHHHHHHHHHHc
Q 019445 4 DKKIKIGINGFGRIGRLVARVALQ 27 (341)
Q Consensus 4 ~~~irV~I~G~G~iG~~llr~l~~ 27 (341)
+.++||+|+|.|..|..+.+++.+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~ 42 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGE 42 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhh
Confidence 346899999999999999999865
No 219
>PLN02494 adenosylhomocysteinase
Probab=84.36 E-value=2.3 Score=43.00 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|+|+|+|.||+.+++.+.... ++++.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~ 283 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVT 283 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998764 576554
No 220
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.27 E-value=2.1 Score=31.83 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
||.|+|+|++|-|++..|.+.. .++.-|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEec
Confidence 6899999999999999998765 56655543
No 221
>PLN02306 hydroxypyruvate reductase
Probab=84.26 E-value=1.4 Score=43.51 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHH-cCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~-~~p~~elv~i 36 (341)
.+|||+|+|+||++++|.+. .. .+++.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~ 195 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY 195 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE
Confidence 68999999999999999985 55 3777655
No 222
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.18 E-value=6.6 Score=39.55 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=50.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR 85 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~ 85 (341)
..||.|+|+|.+|.++++.|.++. .+++.+... +.+....+.+ .+. . .| +.++...
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~--~~~~~~~~~~------~l~-------~------~g--v~~~~~~ 71 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDG--DDERHRALAA------ILE-------A------LG--ATVRLGP 71 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC--chhhhHHHHH------HHH-------H------cC--CEEEECC
Confidence 358999999999999999998876 565554322 1111000000 000 0 01 1111111
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k 122 (341)
.++ . ..++|+|+.++|.--..+.+..+.+.|.+
T Consensus 72 ~~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~ 104 (480)
T PRK01438 72 GPT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGIP 104 (480)
T ss_pred Ccc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCCe
Confidence 121 1 23689999999987666666666677763
No 223
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.15 E-value=0.96 Score=40.35 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=24.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
..||.|+|+|-+|.++++.|.... + ++.-+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lv 51 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIV 51 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEe
Confidence 368999999999999999998875 4 44344
No 224
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.00 E-value=1.8 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=26.8
Q ss_pred CCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 3 GDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 3 ~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.|++.+|-|.|+ |.+|+.+++.|.+++ .+++.+.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADG-AKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 334468999999 999999999999886 4655554
No 225
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.96 E-value=1.3 Score=43.93 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=25.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+.+++.+.... +++.+..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence 58999999999999999998764 7776653
No 226
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.88 E-value=1.6 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=26.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
++|+|.|+|.+|+.+.+.|.+.. .+++ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 58999999999999999999876 6877 5554
No 227
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.65 E-value=1.8 Score=41.07 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.6
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+|-|.|. ||||...++.|++.. .+++.+-..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL 33 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNL 33 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Confidence 6888998 999999999999975 677666554
No 228
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=83.50 E-value=1.4 Score=43.25 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|||+|+|.||+.+.+.|.... +++.+.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~ 145 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALG-IKTLLC 145 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998765 777655
No 229
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.33 E-value=5.3 Score=40.56 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=50.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe-cC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-FR 85 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~-~~ 85 (341)
.||.|+|+|.+|+..+++|.... .+++ +.|.. ......+. . . | +.++. ..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~-~~D~~--~~~~~~l~---~-~-------------------g--~~~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPT-VCDDD--PDALRPHA---E-R-------------------G--VATVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEE-EEcCC--HHHHHHHH---h-C-------------------C--CEEEcCcc
Confidence 48999999999999999988775 4544 45641 11111110 0 0 0 01110 11
Q ss_pred CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445 86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (341)
Q Consensus 86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~ 123 (341)
.++.+ .++|+||.+.|...+.....++.++|+++
T Consensus 64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi~v 97 (488)
T PRK03369 64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGVPI 97 (488)
T ss_pred hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 12222 36799999999877777777777788753
No 230
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.24 E-value=0.57 Score=38.72 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=26.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhh
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY 48 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ 48 (341)
.||.|+|+|-+|.++++.|....--++.-+-+...+.+.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r 44 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNR 44 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCT
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccccc
Confidence 589999999999999999987652244444332234444433
No 231
>PLN03139 formate dehydrogenase; Provisional
Probab=83.21 E-value=1.4 Score=43.45 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=24.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|||+|+|+||+.++|.|... .+++.+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~ 228 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYH 228 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEE
Confidence 5899999999999999999865 4777554
No 232
>PRK06153 hypothetical protein; Provisional
Probab=83.17 E-value=1.7 Score=42.84 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|-+|..++..|..-+=-+|+-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV 206 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF 206 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999998773355444
No 233
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.15 E-value=2.7 Score=40.62 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDD 30 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~ 30 (341)
++||+|+|+|.+|..+...|.++.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g~ 31 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRGP 31 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC
Confidence 4699999999999999999987753
No 234
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.11 E-value=2.5 Score=43.22 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=24.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
-||.|+|+|.+|...++.+.... ..+ .+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V-~v~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIV-RAFDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEE-EEEeC
Confidence 58999999999999999988775 343 34443
No 235
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.10 E-value=6.1 Score=37.97 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p 29 (341)
.||+|+|+ |.+|..++..|...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999999 999999999888755
No 236
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.04 E-value=3 Score=43.20 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|.|.|+ |+||+.+++.|+++. .+|+++.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval~ 111 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAGV 111 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 46999999 999999999998875 5776664
No 237
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=82.67 E-value=4.3 Score=38.23 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.+|-|.|+ |+||+.+++.|.++. .+++++..
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r 37 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR 37 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 58999999 999999999999886 56766544
No 238
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=82.60 E-value=7.4 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQR 28 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~ 28 (341)
.+||+|+|+ |.+|..++-.|...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999999 99999999988776
No 239
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.58 E-value=9 Score=39.25 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=25.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
-||.|+|+|.+|...++.+.... .++ .+.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V-~a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIV-RAFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEE-EEEeC
Confidence 68999999999999999988776 454 44455
No 240
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.49 E-value=3.4 Score=38.74 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|-|.|+ |+||+.+++.|+++. .+++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 58999999 999999999999876 4666554
No 241
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.46 E-value=2.6 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=27.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
..+++|+|+|..|+..++.|.....++-+.|.++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 3589999999999999999975344777788776
No 242
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.45 E-value=1.9 Score=37.68 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=22.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
||+|+|+|.+|+.++..++.+. ++++-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLY 28 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEE
Confidence 7999999999999999998875 665444
No 243
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.42 E-value=3.4 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=20.4
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p 29 (341)
+.||+|+|+ |.+|..++-.|....
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 469999999 999999998887543
No 244
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.27 E-value=1.6 Score=39.38 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.3
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p 29 (341)
..||.|+|+|-+|.+++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 368999999999999999998765
No 245
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.26 E-value=3.7 Score=41.43 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=50.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh--hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST--DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG 83 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~--~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~ 83 (341)
..||+|+|+|..|+..+|+|.++. .++ .+.|..... ..... +. .+ + ..++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d~~~~~~~~~~~~----------l~-------~~------~--~~~~~ 60 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-PAQ-ALTLFCNAVEAREVGA----------LA-------DA------A--LLVET 60 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-CEE-EEEcCCCcccchHHHH----------Hh-------hc------C--EEEeC
Confidence 358999999999999999999876 443 445531110 00000 10 00 0 11111
Q ss_pred cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445 84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (341)
Q Consensus 84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~ 123 (341)
..+++.+ .++|+|+-+.+...+.+...++.+.|.++
T Consensus 61 ~~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i~i 96 (468)
T PRK04690 61 EASAQRL----AAFDVVVKSPGISPYRPEALAAAARGTPF 96 (468)
T ss_pred CCChHHc----cCCCEEEECCCCCCCCHHHHHHHHcCCcE
Confidence 1122222 36899999888776766677777777643
No 246
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=82.13 E-value=1.1 Score=42.65 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=19.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p 29 (341)
||.|+|+|-+|-++++.|..-.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998764
No 247
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.66 E-value=8.8 Score=36.77 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
-+|.|.|+|-+|...++++.... .+++.+..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~ 204 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNR 204 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence 47999999999999998877765 57777653
No 248
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=81.59 E-value=3.6 Score=43.92 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=23.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC-CcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRD-DVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i 36 (341)
.||+|+|+|.+|+.+++.+.+.. ..++..+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~ 34 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAV 34 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999998754 2354444
No 249
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.54 E-value=1.3 Score=40.32 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
..||.|+|+|-+|.++++.|.... +.-..+.|
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD 52 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD 52 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 368999999999999999998765 43334444
No 250
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=81.40 E-value=1.9 Score=41.84 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=30.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~ 39 (341)
.|+.|.|. |-||...+.++.++|+ |+++++...
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag 36 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG 36 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC
Confidence 58999999 9999999999999985 899999765
No 251
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.39 E-value=2.5 Score=37.68 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=27.9
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..|+..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 m~~~~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~ 37 (237)
T PRK07326 1 MMSLKGKVALITGGSKGIGFAIAEALLAEG-YKVAITA 37 (237)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEee
Confidence 43344468999999 999999999999874 6766664
No 252
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.38 E-value=5 Score=38.20 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=24.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.+|+|+|. |.+|+-+.++|.++. .++...++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~ 191 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHS 191 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEECC
Confidence 58999999 699999999998764 55555543
No 253
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=81.12 E-value=5.7 Score=37.64 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=22.2
Q ss_pred EEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 9 IGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|+|+|+|++|..++-.|...+-+.-+.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5899999999999988887763332233343
No 254
>PRK08219 short chain dehydrogenase; Provisional
Probab=81.05 E-value=2.1 Score=37.77 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.4
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||+++-|.|+ |.+|+.+++.|.++ .+++.+.
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~ 33 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT--HTLLLGG 33 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence 3468999999 99999999999887 5666664
No 255
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.83 E-value=2.6 Score=39.62 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.7
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+..||+|+|+|.+|..+...+..+. ++++..
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l~ 33 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAG-YDVLLN 33 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CeEEEE
Confidence 3468999999999999999998774 555444
No 256
>PLN02427 UDP-apiose/xylose synthase
Probab=80.77 E-value=2.3 Score=41.45 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.1
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++||-|.|+ |++|+.|++.|.++...+++++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 368999999 99999999999987546777775
No 257
>PRK08291 ectoine utilization protein EutC; Validated
Probab=80.59 E-value=3.6 Score=39.56 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+++|+|+|..|+..++.+.....++-+.|.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999998875434777777776
No 258
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.40 E-value=2.1 Score=39.42 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
.||.|+|+|-+|.++++.|..-.
T Consensus 33 ~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 259
>PLN02712 arogenate dehydrogenase
Probab=80.13 E-value=2.5 Score=44.73 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++||||+|+|.+|+.+++.|.++. ++|+++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~d 82 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHS 82 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999999999999998875 6776654
No 260
>PRK07340 ornithine cyclodeaminase; Validated
Probab=80.07 E-value=2.1 Score=40.73 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=26.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~ 39 (341)
..+++|+|+|..|+..++.+.. +| ++-+.|.++
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~-~~~v~v~~r 158 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLP-VRRVWVRGR 158 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 3689999999999999999875 45 566677776
No 261
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.99 E-value=2.8 Score=39.41 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|..++..+..+. ++++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~ 32 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIV 32 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEE
Confidence 58999999999999999998875 565554
No 262
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=79.90 E-value=2.5 Score=42.92 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=25.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC-CcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRD-DVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~ 37 (341)
|||+|+|.||+|..+.-.|.++. .++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 58999999999999998888763 57787774
No 263
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=79.75 E-value=2.4 Score=41.81 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|||+|+|.||+.+.+.+.... +++.+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~ 145 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVC 145 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998765 676554
No 264
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.68 E-value=9.2 Score=38.40 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=25.4
Q ss_pred ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~ 39 (341)
..||.|+|.|.+|+. ++|+|.++. .++ .+.|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G-~~V-~~~D~ 39 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG-YKV-SGSDL 39 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC-CeE-EEECC
Confidence 358999999999999 799999886 454 45554
No 265
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.60 E-value=3.2 Score=37.15 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=29.0
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|.+++..+|.|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~ 37 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVD 37 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 55555568999999 999999999999875 5766664
No 266
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.58 E-value=1.8 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
..||+|+|+|-+|.+++..|.... +.-+.+.|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 368999999999999999998765 432244443
No 267
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.48 E-value=8.4 Score=38.30 Aligned_cols=90 Identities=24% Similarity=0.224 Sum_probs=51.1
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA 80 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~ 80 (341)
|.+....+|.|+|.|..|+..+++|.++. .++. +.|.......... ++ . | +.
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G-~~v~-~~D~~~~~~~~~~----------l~-------~-------g--~~ 52 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLARG-VTPR-VIDTRITPPGLDK----------LP-------E-------N--VE 52 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHHCC-CeEE-EEcCCCCchhHHH----------Hh-------c-------C--CE
Confidence 43433468999999999999999888776 4543 3443111100000 10 0 1 11
Q ss_pred EEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc
Q 019445 81 VFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122 (341)
Q Consensus 81 v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k 122 (341)
++. ..++..+ .+.|+|+-+.+...+.....++.++|++
T Consensus 53 ~~~~~~~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~g~~ 91 (438)
T PRK03806 53 RHTGSLNDEWL----LAADLIVASPGIALAHPSLSAAADAGIE 91 (438)
T ss_pred EEeCCCCHHHh----cCCCEEEECCCCCCCCHHHHHHHHCCCe
Confidence 211 1122212 2578888777766666777778888886
No 268
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=79.46 E-value=2.7 Score=38.56 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=54.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC-CCChhhhhhhcccc-cccCcccCceeeecCCcce-EEC-CEEEEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP-FISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTL-LFG-EKPVAVFG 83 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~-~~~~~~~a~ll~~d-s~~g~~~~~~v~~~~~~~l-~i~-g~~i~v~~ 83 (341)
||.|+|+|-+|.++++.|...+ +.-..|.|. ..+...+.+.+.|. +.-|+.+ .++-.+ .+ .++ +-.+....
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~K-a~va~~---~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK-SEVAAE---AVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHH-HHHHHH---HHHHHCCCCEEEEEe
Confidence 6899999999999999998765 322334343 12333333322222 1223332 111000 00 011 11111111
Q ss_pred c-CCC-CCC--CccCCCccEEEecCCCccCHHHHHHH-HhCCCcEE
Q 019445 84 F-RNP-EEI--PWAKTGAEYVVESTGVFTDKDKAAAH-LKGGAKKV 124 (341)
Q Consensus 84 ~-~~~-~~~--~w~~~~~DvV~~at~~~~s~~~~~~~-l~~G~k~V 124 (341)
+ .++ +.. .| ..+.|+||.|+....++.+.... .+.+..-+
T Consensus 76 ~~i~~~~~~~~~f-~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI 120 (234)
T cd01484 76 NKVGPEQDFNDTF-FEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120 (234)
T ss_pred ccCChhhhchHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1 000 111 11 24899999999998887766544 45555433
No 269
>PRK12827 short chain dehydrogenase; Provisional
Probab=79.15 E-value=3.2 Score=37.08 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=28.9
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.++.+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 1 MASLDSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCCcCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 66555568999999 999999999999886 5666654
No 270
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.14 E-value=6.2 Score=37.74 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=21.9
Q ss_pred eEEEEccCHHHHHHHHHHHc-CCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQ-RDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~-~p~~elv~i~ 37 (341)
+|.|.|+|-+|..++.++.. ....+++++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 79999999999988887764 3334555553
No 271
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.97 E-value=3.2 Score=38.96 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
..||+|+|+|.+|..++..+.++. .++..+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G-~~V~l~ 32 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHG-FDVTIY 32 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 358999999999999999988764 444333
No 272
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.62 E-value=9.2 Score=36.93 Aligned_cols=30 Identities=13% Similarity=0.548 Sum_probs=23.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|.|.|+|-+|..+++++.... .+++.+..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 7899999999999998877664 56666543
No 273
>PLN02240 UDP-glucose 4-epimerase
Probab=78.42 E-value=3.3 Score=39.45 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.3
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.+ ..||-|.|+ |.+|+.+++.|.+.. .+|+++.
T Consensus 1 ~~~~-~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 1 MSLM-GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CCCC-CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 5444 368999999 999999999998876 5777774
No 274
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.30 E-value=1.9 Score=40.81 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=25.9
Q ss_pred CCccEEEecCCCcc------------------CHHHHHHHHhCCCcEEE-ecCCCCCCCeeeeccC
Q 019445 95 TGAEYVVESTGVFT------------------DKDKAAAHLKGGAKKVV-ISAPSKDAPMFVVGVN 141 (341)
Q Consensus 95 ~~~DvV~~at~~~~------------------s~~~~~~~l~~G~k~V~-lSa~~~d~~~~V~Gvn 141 (341)
.++|+||-|.-... +...+..+.+.|+++++ ||.|-+-.|+=+||..
T Consensus 76 ~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmGat 141 (293)
T PF02719_consen 76 YKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMGAT 141 (293)
T ss_dssp -T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHHHH
T ss_pred cCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHHHH
Confidence 48999998876432 34455667788998766 7877554577778874
No 275
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=77.97 E-value=11 Score=37.44 Aligned_cols=32 Identities=28% Similarity=0.594 Sum_probs=29.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|-|+|.+|+.+++.|.+. ..+|+++.|.
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds 239 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDS 239 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 6999999999999999999877 4899999886
No 276
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.64 E-value=2.9 Score=42.96 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=25.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+.+++.|.... +++.+..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999998765 6776653
No 277
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=77.62 E-value=2.7 Score=41.61 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=24.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||+|+|.|++|..+...|.+.. .+++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 7999999999999999998765 4665553
No 278
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.59 E-value=3.8 Score=39.93 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.8
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+||.|.|+ |+||+.+++.|.++. .++.++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 369999999 999999999999876 5777775
No 279
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=77.31 E-value=5.6 Score=39.88 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p 29 (341)
||.|+|+|-+|-|+++.|....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~G 22 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999987654
No 280
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=77.15 E-value=3.3 Score=39.78 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.1
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
++||-|.|+ |++|+.|++.|.++. .+++++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 358999999 999999999999885 57777743
No 281
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.11 E-value=3 Score=42.83 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|||+|+|.||+.+++.|.... +++.+..
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFG-MKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence 58999999999999999998764 6776664
No 282
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.01 E-value=3.2 Score=39.20 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=24.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|+|.|.+|..+.+.|.++. .++. +.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~-v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQ-VFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 38999999999999999998876 4554 4444
No 283
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=76.98 E-value=3.7 Score=39.97 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.+++.+|.|+|+|.+|..++..|.++. ++++-+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G-~~v~liE 36 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAG-LSVALVE 36 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCC-CEEEEEe
Confidence 77777789999999999999998887764 6654443
No 284
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=76.97 E-value=3.7 Score=38.52 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=26.6
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
|||-|.|+ |++|+.+.+.|.++. .++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCc
Confidence 58999999 999999999998854 78888843
No 285
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=76.84 E-value=9.2 Score=36.95 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred CccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
++|+||+|+|...+.+.+-..++.|-+.+.+.
T Consensus 259 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 68999999997666666666777776655543
No 286
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=76.68 E-value=3.6 Score=39.65 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|||+|+|.+|+.+++.|.... ++++..++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence 58999999999999999998775 787665543
No 287
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.47 E-value=11 Score=34.89 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.7
Q ss_pred CccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
++|+||+|++...+.+.+-..++.|-+.+.+.
T Consensus 187 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 187 GVDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 68999999997766666677777777666655
No 288
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.47 E-value=3.5 Score=39.14 Aligned_cols=29 Identities=31% Similarity=0.221 Sum_probs=24.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
++|+|+|+|.+|..+...|.++. .+++..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~ 31 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLW 31 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEE
Confidence 48999999999999999999875 465544
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=76.43 E-value=16 Score=35.47 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=57.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
-+|+|.|+|=.|...++++..-. .+++++... .+....+..|.- ...++.+ . +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~-~~K~e~a~~lGA------------------d~~i~~~-~----~~~ 222 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS-EEKLELAKKLGA------------------DHVINSS-D----SDA 222 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC-hHHHHHHHHhCC------------------cEEEEcC-C----chh
Confidence 48999999888888888777665 899998654 332222221110 1112111 0 001
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
.+.+. ..+|+++++.+ ..+.+.+.+.++.|=+.|.+..+
T Consensus 223 ~~~~~---~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 223 LEAVK---EIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHhH---hhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 11121 12899999999 88888888888887776665543
No 290
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=76.42 E-value=14 Score=31.03 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=56.8
Q ss_pred eeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445 7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF 82 (341)
Q Consensus 7 irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~ 82 (341)
.+||++|+ .+-+-.+.+-|.++. .+|.+||-. .+++ ... |.. ++
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~G-Y~ViPVNP~-~~~~---------eiL-------------------G~k--~y 64 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKG-YRVIPVNPK-LAGE---------EIL-------------------GEK--VY 64 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCC-CEEEeeCcc-cchH---------Hhc-------------------Cch--hh
Confidence 57999999 677888888888887 899999853 2221 111 111 11
Q ss_pred ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
. +..+++ ..+|+|-.--+.....+.++++++.|+|++=
T Consensus 65 ~--sL~dIp---e~IDiVdvFR~~e~~~~i~~eal~~~~kv~W 102 (140)
T COG1832 65 P--SLADIP---EPIDIVDVFRRSEAAPEVAREALEKGAKVVW 102 (140)
T ss_pred h--cHHhCC---CCCcEEEEecChhhhHHHHHHHHhhCCCeEE
Confidence 1 234443 3688888888888888999999999987664
No 291
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.37 E-value=2.9 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 3 ~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+++.+|+|+|||..|...+|.|.++. ++++..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g-~~v~vf 35 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREG-HEVVVF 35 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCC-CCceEE
Confidence 345689999999999999999998773 444333
No 292
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=76.08 E-value=3 Score=42.49 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|+..++.+||++|.|.+|+.+++.|.++. ++|. |.++
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G-~~V~-V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCC-CeEE-EECC
Confidence 66667789999999999999999999886 6664 4444
No 293
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.86 E-value=3.7 Score=38.78 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=24.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||||+|+|.+|..+++.|.+.. .+++. .++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~v-~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG-HEVVG-YDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC-CeEEE-EEC
Confidence 8999999999999999998765 56544 444
No 294
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=75.80 E-value=3.9 Score=39.43 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP 78 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~ 78 (341)
|.+.+..-+-|.|+ ||+|+.+++.|..+. ... ++..++... ..+...| +.....|+ .
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs~~kl~~l~~~L--G~~~~~~p-------------~---- 59 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRSSAKLDALRASL--GPEAAVFP-------------L---- 59 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHcC-Cch-hhccCCHHHHHHHHHhc--CccccccC-------------C----
Confidence 66666688999999 999999999998764 222 454442111 1111111 11111222 0
Q ss_pred EEEEecCCCCCCCccCCCccEEEecCCCccC--HHHHHHHHhCCCcEEEecCC
Q 019445 79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTD--KDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s--~~~~~~~l~~G~k~V~lSa~ 129 (341)
..+...+++ ..+++||+.|.|.+.. ...+...+.+|..=.|||+-
T Consensus 60 ---~~p~~~~~~---~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 60 ---GVPAALEAM---ASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred ---CCHHHHHHH---HhcceEEEeccccccccccHHHHHHHHhCCCeeecccc
Confidence 000001111 2478999999998874 45667778888888888863
No 295
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.77 E-value=5.5 Score=38.53 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|-+|..+++.|.... +.-+.|.|.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~ 56 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAG-IGKLTIADR 56 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 58999999999999999998765 433344443
No 296
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=75.75 E-value=8.4 Score=35.99 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=24.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|.|+|+|.+|+.+++.|....-.+| .|.++
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V-~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEI-TIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEE-EEEeC
Confidence 589999999999999999987762344 44444
No 297
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=75.36 E-value=6.3 Score=34.03 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=21.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.++.|.|||.+|+-+++.|.... .. |.|.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~ 54 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI 54 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC
Confidence 47999999999999999998875 33 255553
No 298
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.36 E-value=2.1 Score=45.74 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|+.++..++.+. ++++-+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~ 342 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMK 342 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999888775 555444
No 299
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.07 E-value=4.1 Score=38.48 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=24.7
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||||+|+|.+|..+++.|.++. ++|+. .++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v-~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVG-YDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEE-EEC
Confidence 7999999999999999998875 66654 444
No 300
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.05 E-value=4 Score=38.56 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=23.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
||||+|+|.+|..+.+.|.++. .++...
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~~ 29 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG-HDCVGY 29 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC-CEEEEE
Confidence 7999999999999999998875 666543
No 301
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=75.03 E-value=18 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=23.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcE-EEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i~ 37 (341)
-+|.|.|+|-+|..+++++.... .+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 47999999999999988877664 54 55553
No 302
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=75.01 E-value=3.1 Score=38.00 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=30.0
Q ss_pred CccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa 128 (341)
++|+|++|||+....+.+.+++++|..++++|.
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~ 69 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKDLLIMSV 69 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 689999999999999999999999998777653
No 303
>PRK07806 short chain dehydrogenase; Provisional
Probab=74.98 E-value=5.2 Score=35.89 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..|...++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~ 37 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNY 37 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 66655578999999 999999999998875 5665553
No 304
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=74.95 E-value=4.5 Score=36.78 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+++|.|.|+ |.+|+.+++.|+++. .+++++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence 468999999 999999999998875 5666654
No 305
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.87 E-value=13 Score=37.04 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|.|+|.|.+|+.++|.|.++. .+++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~ 34 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG-AEVAAY 34 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999999887 565443
No 306
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=74.69 E-value=3.2 Score=44.31 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|..++..++.+. ++++-+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~ 342 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMK 342 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999988875 665444
No 307
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=74.60 E-value=4.7 Score=40.02 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=29.6
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~ 39 (341)
++.||-|+|+|+.|..+++.|.+++ +++++-|...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence 5679999999999999999999874 6777777654
No 308
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=74.58 E-value=4.5 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=25.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++||||+|.||+|.-+...|... ++++++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~~--~~V~g~D 35 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGKS--RQVVGFD 35 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhcC--CEEEEEe
Confidence 346999999999999999987663 7877764
No 309
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.52 E-value=9.1 Score=38.44 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|+|+|..|+.++++|.+.. .++ .+.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 58999999999999999999886 443 45554
No 310
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.42 E-value=3.2 Score=44.24 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=22.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|+.++..++....++++.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~ 339 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK 339 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence 579999999999999998873323555443
No 311
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=74.40 E-value=11 Score=35.33 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDD 30 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~ 30 (341)
-.|||+|+ |-||..+.|.|..|-.
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~ 192 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG 192 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC
Confidence 46999999 9999999999987754
No 312
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=74.39 E-value=3.7 Score=38.02 Aligned_cols=35 Identities=26% Similarity=0.520 Sum_probs=28.0
Q ss_pred CceeEEEEccCHHHHHHHHHHHcC----C----CcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQR----D----DVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~----p----~~elv~i~~~ 39 (341)
.+++|+++|+|-+|++++..+... . .++++++.+.
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 468999999999999999887532 1 3788899875
No 313
>PRK06141 ornithine cyclodeaminase; Validated
Probab=74.34 E-value=5.6 Score=38.00 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~ 39 (341)
..+|+|+|+|..|+..++.+.. ++ ++-+.|.++
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~R 158 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGR 158 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 3689999999999999986665 55 554566665
No 314
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.16 E-value=11 Score=38.21 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=25.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|.|.+|+.++|+|..+. .++. +.|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~-~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLR-VADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEE-EEcC
Confidence 58999999999999999999887 5654 4453
No 315
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=74.15 E-value=14 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.7
Q ss_pred EEEEcc-CHHHHHHHHHHHcCC
Q 019445 9 IGINGF-GRIGRLVARVALQRD 29 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p 29 (341)
|+|+|+ |.+|..++..|...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689999 999999999888766
No 316
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=74.14 E-value=5.8 Score=37.17 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p 29 (341)
..+|.|+|.|-+|.+++..|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 368999999999999999998764
No 317
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=74.14 E-value=4.9 Score=39.55 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=26.7
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
++||.|.|+ |++|+.+++.|.++. .+++++.-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 368999999 999999999998875 67776653
No 318
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=73.99 E-value=5.1 Score=39.92 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|-+|+.+++.|..+. +.-+.|.++
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g-~~~I~V~nR 213 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANR 213 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence 58999999999999999999875 333345444
No 319
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=73.99 E-value=4 Score=37.51 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
.||.|+|+|-+|.+++..|....
T Consensus 25 ~~VlvvG~GglGs~va~~La~~G 47 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAG 47 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcC
Confidence 58999999999999999998764
No 320
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.97 E-value=5.6 Score=35.90 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.++..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~~~~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~ 38 (262)
T PRK13394 2 MSNLNGKTAVVTGAASGIGKEIALELARAG-AAVAIAD 38 (262)
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 33333468999999 999999999999886 4666553
No 321
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=73.96 E-value=11 Score=37.30 Aligned_cols=30 Identities=43% Similarity=0.616 Sum_probs=24.0
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||.|+|.|.+|+.++|+|.++. .++ .+.|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeC
Confidence 5899999999999999999876 444 45554
No 322
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=73.94 E-value=3.7 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||||+|+|.+|..+.+.|.++. +++... ++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~-dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVT-TI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEE-cC
Confidence 5899999999999999998775 666544 44
No 323
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=73.92 E-value=8.1 Score=37.17 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.6
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRD 29 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p 29 (341)
+++||+|+|+ |.+|..++-.|...+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 4689999999 999999988887665
No 324
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=73.33 E-value=4.3 Score=40.10 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=22.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||+|+|.||+|..+..++.. ..+++.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD 29 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALD 29 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEE
Confidence 79999999999999977664 36766664
No 325
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=73.29 E-value=2.8 Score=40.52 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcC
Q 019445 7 IKIGINGFGRIGRLVARVALQR 28 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~ 28 (341)
.||||+|+|+||+.+++-|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 6899999999999999988653
No 326
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.29 E-value=11 Score=35.82 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
+||.|+|+|.+|..+.-.|.+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999998888877
No 327
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.20 E-value=5.3 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCC------cEEEEe
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDD------VELVAV 36 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~------~elv~i 36 (341)
++||+|+|+ |++|..+++.|..++- .||+.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 479999999 9999999999987552 266655
No 328
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.99 E-value=6.2 Score=35.27 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..|...++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~ 37 (239)
T PRK08703 1 MATLSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVA 37 (239)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEe
Confidence 66665578999999 999999999999876 5665553
No 329
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.99 E-value=11 Score=36.14 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=23.2
Q ss_pred CccEEEecCCCccCHHHHHHHHhCCCcEE
Q 019445 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKV 124 (341)
Q Consensus 96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V 124 (341)
..|++|+|++...+.+.+-.+++.|=..|
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCEEE
Confidence 48999999999999988877777655433
No 330
>PRK12742 oxidoreductase; Provisional
Probab=72.74 E-value=6.3 Score=35.01 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|+.++..+|-|.|+ |.||+++++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~ 36 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFT 36 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEe
Confidence 66665568999999 999999999998875 465544
No 331
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.68 E-value=4.9 Score=38.27 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=23.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||+|+|+|++|..++..|...+-..-+.+.|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 79999999999999999887763332334343
No 332
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=72.58 E-value=7.7 Score=36.88 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=28.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.++||+|+|..|+..++++..-..++=+.|.++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r 150 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR 150 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 589999999999999999887555877888876
No 333
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.17 E-value=5.1 Score=37.51 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=23.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||+|+|+|.+|+.++..|.++. .++..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV 30 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC-CcEEEE
Confidence 47999999999999999988764 455444
No 334
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=72.04 E-value=16 Score=39.52 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.9
Q ss_pred ceeEEEEccCHHHHHH-HHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~l-lr~l~~~p~~elv~i~~~ 39 (341)
+.+|.|+|.|.+|+.. +|+|.++. .++ .+.|.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G-~~V-~~sD~ 36 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRG-YSV-SGSDL 36 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCC-CeE-EEECC
Confidence 3479999999999997 88888876 554 45564
No 335
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.98 E-value=9.8 Score=39.22 Aligned_cols=116 Identities=21% Similarity=0.325 Sum_probs=62.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcC-CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445 7 IKIGINGF-GRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF 84 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~-p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~ 84 (341)
.+|-|-|+ |-||.+++|.+++. | -+|+ +-+.+.-.. |....+ ...+|++..+ ...+++ -
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~p-~~i~-l~~~~E~~~---~~i~~e-l~~~~~~~~~------~~~igd-------V 311 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFNP-KEII-LFSRDEYKL---YLIDME-LREKFPELKL------RFYIGD-------V 311 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcCC-CEEE-EecCchHHH---HHHHHH-HHhhCCCcce------EEEecc-------c
Confidence 58999999 99999999988765 4 3443 334311111 111100 0111110000 111111 1
Q ss_pred CCCCCCC--ccCCCccEEEecCCCcc------------------CHHHHHHHHhCCCcEEE-ecCCCCCCCeeeeccC
Q 019445 85 RNPEEIP--WAKTGAEYVVESTGVFT------------------DKDKAAAHLKGGAKKVV-ISAPSKDAPMFVVGVN 141 (341)
Q Consensus 85 ~~~~~~~--w~~~~~DvV~~at~~~~------------------s~~~~~~~l~~G~k~V~-lSa~~~d~~~~V~Gvn 141 (341)
+|.+.+. ....++|+||-|.-... +...++.+.+.|+++++ ||.|-+=.|+=+||..
T Consensus 312 rD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaT 389 (588)
T COG1086 312 RDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGAT 389 (588)
T ss_pred ccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHH
Confidence 1222211 11135899998865332 35566777889988766 8877654677788875
No 336
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=71.81 E-value=8.3 Score=36.50 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcE-EEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i~ 37 (341)
-+|.|+|+|-+|..+++++.... .. ++++.
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~ 195 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG-AEDVIGVD 195 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 37999999999999998887665 55 66553
No 337
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.78 E-value=12 Score=35.63 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|+|+|- |.+|+-++++|.+.. .++...+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~ 189 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAH 189 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCC-CEEEEEC
Confidence 58999997 999999999998764 5554443
No 338
>PLN02572 UDP-sulfoquinovose synthase
Probab=71.76 E-value=5.5 Score=39.92 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=26.6
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+++||-|.|+ |+||+.|+|.|.+.. .+++.+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 3468999999 999999999999875 5776653
No 339
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.76 E-value=6.6 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.5
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|++.. .+|-|.|+ |+||+.+++.|.++. .+++.+
T Consensus 1 ~~~~~-k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~ 35 (325)
T PLN02989 1 MADGG-KVVCVTGASGYIASWIVKLLLFRG-YTINAT 35 (325)
T ss_pred CCCCC-CEEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 77754 68999999 999999999998875 465544
No 340
>PRK06199 ornithine cyclodeaminase; Validated
Probab=71.71 E-value=8.7 Score=37.81 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=29.4
Q ss_pred ceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~ 39 (341)
..+++|+|+|..++..++++.. +|.++-+.|.++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r 189 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR 189 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC
Confidence 3689999999999999999887 677888888887
No 341
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.41 E-value=17 Score=34.47 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=22.6
Q ss_pred eeEEEEccCH-HHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGR-IGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~-iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|.|+|.|. +|+-+.++|.++. ..++..+
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~g-atVtv~~ 189 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVTILH 189 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCC-CeEEEEe
Confidence 5899999944 9999999998764 5554443
No 342
>PRK10083 putative oxidoreductase; Provisional
Probab=71.22 E-value=13 Score=35.10 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=23.0
Q ss_pred CccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
++|++|+|++...+...+.++++.+-+.+.++
T Consensus 228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 228 KPTLIIDAACHPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 46899999996555566667777777666654
No 343
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=71.10 E-value=3.5 Score=40.46 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=55.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc-cccCcccCceeeecCCcce-EECC-EEEEEE
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTL-LFGE-KPVAVF 82 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d-s~~g~~~~~~v~~~~~~~l-~i~g-~~i~v~ 82 (341)
..||.|+|+|-+|.+++..|....-=+|.-+.....+...+...+.|+ +.-|+.+ ...-. . .| .+|. ..+...
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~~~~-~--~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VEVAA-E--RLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHH-HHHHH-H--HHHHHCCCCeeEEe
Confidence 358999999999999999998765224433332222333332222221 1112221 00000 0 00 0111 111111
Q ss_pred e-cCCCCCCCccCCCccEEEecCCCccCHHHHHHH-HhCCCcEE
Q 019445 83 G-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH-LKGGAKKV 124 (341)
Q Consensus 83 ~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~-l~~G~k~V 124 (341)
. ..+++++.--..++|+||+|+..+.++.....+ .+.|...|
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1 111111110024799999999999887665543 45565433
No 344
>PRK06194 hypothetical protein; Provisional
Probab=71.09 E-value=6.8 Score=36.08 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|..|.+.++-|.|+ |.||+.+++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~ 36 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALG-MKLVLA 36 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEE
Confidence 66665568999999 999999999999886 566554
No 345
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.98 E-value=9.1 Score=36.44 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=22.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcE-EEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i 36 (341)
-+|.|.|+|-+|..+++++.... .+ ++++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~ 191 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALG-AKSVTAI 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37999999999999998887765 55 3444
No 346
>PRK08223 hypothetical protein; Validated
Probab=70.83 E-value=11 Score=35.77 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
-||.|+|+|-+|.+++..|..-.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhC
Confidence 58999999999999999888754
No 347
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.81 E-value=15 Score=33.45 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|-|+|.|.++..=++.|++.. .+|.-|
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVV 54 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKG-CYVYIL 54 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 57999999999988788888765 444444
No 348
>PLN00198 anthocyanidin reductase; Provisional
Probab=70.71 E-value=6.2 Score=37.49 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=26.1
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++.+|-|.|+ |+||+.+++.|+++. .+++++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 3568999999 999999999999875 4665543
No 349
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=70.64 E-value=7.5 Score=34.48 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|-+|.++++.|.... +.-+.+.|.
T Consensus 22 s~VlIiG~gglG~evak~La~~G-Vg~i~lvD~ 53 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSG-IGSLTILDD 53 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 58999999889999999998775 544455553
No 350
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.54 E-value=25 Score=32.83 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=50.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
+|.|.|.|.+|..+++++.... ++++.+.+. .+....+. .+|- .. ++.....
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~-~~~~~~~~------~~g~------------~~--------~~~~~~~ 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG-AEVFAFTRS-GEHQELAR------ELGA------------DW--------AGDSDDL 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEcCC-hHHHHHHH------HhCC------------cE--------EeccCcc
Confidence 6889988999999988777665 787777554 22111110 0110 00 0100011
Q ss_pred CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
. ..++|+++++++.+...+.+..+++.+-+.+.
T Consensus 222 ~-----~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 222 P-----PEPLDAAIIFAPVGALVPAALRAVKKGGRVVL 254 (329)
T ss_pred C-----CCcccEEEEcCCcHHHHHHHHHHhhcCCEEEE
Confidence 0 23689999998877667777777777765454
No 351
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.52 E-value=11 Score=36.16 Aligned_cols=94 Identities=15% Similarity=0.259 Sum_probs=50.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
-+|.|+|.|-+|..+++++.... .+++.+.+. .+. ...++ ..+|- . .. ++... ...
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~-~~~--~~~~~---~~~Ga-~----------~~-i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG-HHVTVISSS-DKK--REEAL---EHLGA-D----------DY-LVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CeEEEEeCC-HHH--HHHHH---HhcCC-c----------EE-ecCCC-----hHH
Confidence 36899999999999998877665 566666543 111 11110 11110 0 00 10000 000
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
..+. ..++|+||+|+|...+.+.+-..++.|-+.+.++
T Consensus 238 ~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 238 MQEA---ADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred HHHh---cCCCcEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence 0111 1268999999997656666666777776655543
No 352
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=5.1 Score=40.35 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=26.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEE-EEeeC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVEL-VAVND 38 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~el-v~i~~ 38 (341)
|++|||+|.|..|-.++..|+.+|..+- +.|.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e 34 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFE 34 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEec
Confidence 3699999999999999999998875443 55544
No 353
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=70.46 E-value=8.4 Score=37.30 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=24.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~ 37 (341)
..||.|+|+|-+|.+++..|.... + +|.-|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD 55 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVD 55 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 368999999999999999998765 4 444443
No 354
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=70.38 E-value=7.7 Score=30.57 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=23.0
Q ss_pred EEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 9 IGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
|-|+|+|++|+++++.|.+. ..+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEEC
Confidence 56899999999999999984 467777754
No 355
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.32 E-value=18 Score=36.13 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=50.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec-
Q 019445 7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF- 84 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~- 84 (341)
.||.|+|.|.+|+..++.|+.+.. .++. +.|.......... +. . | +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~----------l~-------~-------g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ----------LP-------E-------D--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH----------hh-------c-------C--CEEEeCC
Confidence 579999999999999999988743 5554 4554111110000 11 0 1 122111
Q ss_pred CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445 85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123 (341)
Q Consensus 85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~ 123 (341)
.+++.+ .++|+|+-+.+...+.....++.++|.++
T Consensus 61 ~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~gi~i 95 (438)
T PRK04663 61 WNLEWL----LEADLVVTNPGIALATPEIQQVLAAGIPV 95 (438)
T ss_pred CChHHh----ccCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 233333 36899998888766666666666777643
No 356
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=70.28 E-value=6.1 Score=41.70 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=27.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
++||-|.|+ |+||+.|++.|+++...+++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 468999999 999999999999864578888853
No 357
>PRK09135 pteridine reductase; Provisional
Probab=70.08 E-value=7.9 Score=34.49 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..++..+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK09135 1 MMTDSAKVALITGGARRIGAAIARTLHAAG-YRVAIHY 37 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc
Confidence 43334467999999 999999999999875 6776664
No 358
>PRK12746 short chain dehydrogenase; Provisional
Probab=70.04 E-value=8.3 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=27.5
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|..++..++-|.|+ |.+|++++|.|.++. .+++.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G-~~v~i~ 36 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLANDG-ALVAIH 36 (254)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 55554468999999 999999999999886 455443
No 359
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=70.00 E-value=5.8 Score=39.71 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=26.7
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+||-|.|+ |+||+.|++.|.++. .+|+++..
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr 152 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDN 152 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 68999999 999999999999875 57777753
No 360
>PRK06500 short chain dehydrogenase; Provisional
Probab=69.87 E-value=7.8 Score=34.62 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|..++..+|-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~ 36 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFLAEG-ARVAIT 36 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEe
Confidence 54444468999999 999999999999886 566555
No 361
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=69.27 E-value=15 Score=34.09 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++.|+|+|-+|+.+++.|.... .++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~ 147 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIAN 147 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999998876 4655443
No 362
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=69.16 E-value=7.3 Score=39.70 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=25.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+||||+|+|.+|..++..++.+. +++. +.|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence 48999999999999999998875 5554 4454
No 363
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.07 E-value=8.8 Score=34.24 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+...|.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~ 37 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAG-WDLALVA 37 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 55555568999999 999999999999876 4655553
No 364
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=68.91 E-value=6.9 Score=41.26 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.6
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcC-CCcEEEEee
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQR-DDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~-p~~elv~i~ 37 (341)
+.+||-|.|+ |+||+.|++.|.++ +..+++++.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3469999999 99999999999876 457887774
No 365
>PLN02778 3,5-epimerase/4-reductase
Probab=68.83 E-value=8 Score=36.38 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=23.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEE
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELV 34 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv 34 (341)
++||-|.|+ |++|+.|++.|.++. .+++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 479999999 999999999998875 3554
No 366
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.76 E-value=5.7 Score=37.65 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=23.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
||.|+|+|-+|-++++.|.... +.-..|.|
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD 30 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVID 30 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 6899999999999999998754 43334444
No 367
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.74 E-value=7.2 Score=34.63 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.||.|+|+|-+|.++++.|.... +.-+.+.|
T Consensus 20 s~VlviG~gglGsevak~L~~~G-Vg~i~lvD 50 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAG-IDSITIVD 50 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-CCEEEEEE
Confidence 58999999889999999998764 43334444
No 368
>PLN02206 UDP-glucuronate decarboxylase
Probab=68.15 E-value=6.5 Score=39.45 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=26.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+||-|.|+ |+||+.|++.|.++. .+++++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 68999999 999999999999875 5777764
No 369
>PRK06847 hypothetical protein; Provisional
Probab=68.15 E-value=7.5 Score=37.39 Aligned_cols=33 Identities=27% Similarity=0.128 Sum_probs=25.6
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
|++ +.+|.|+|+|..|..++..|.++. ++++-+
T Consensus 1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g-~~v~v~ 33 (375)
T PRK06847 1 MAA--VKKVLIVGGGIGGLSAAIALRRAG-IAVDLV 33 (375)
T ss_pred CCC--cceEEEECCCHHHHHHHHHHHhCC-CCEEEE
Confidence 766 358999999999999998887764 555444
No 370
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=67.66 E-value=7.3 Score=36.77 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEE
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELV 34 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv 34 (341)
|||++|.|.+|..+++.|.+.. +++.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~ 27 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLH 27 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEE
Confidence 7999999999999999998875 4554
No 371
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=67.62 E-value=7.7 Score=36.93 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=23.4
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+||+|+|+|++|..++-.+..+...+++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvlv 31 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLL 31 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEE
Confidence 489999999999999998887653354333
No 372
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=67.57 E-value=8.7 Score=33.88 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=23.8
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|-|.|+ |++|+.+++.|.++. .+++.+...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 579999 999999999999886 345555543
No 373
>PRK07877 hypothetical protein; Provisional
Probab=67.56 E-value=5 Score=42.85 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=53.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc--EEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcceEECC-EEEEEE
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV--ELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVF 82 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~--elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g-~~i~v~ 82 (341)
.||+|+|+| +|..++..|.... + +| .+.|. ..+..++-..+-..+.-|+.+ -++-. .. -..+|. -.|..+
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraG-vvG~l-~lvD~D~ve~sNLnRq~~~~~diG~~K-v~~a~-~~-l~~inp~i~v~~~ 181 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEG-LCGEL-RLADFDTLELSNLNRVPAGVFDLGVNK-AVVAA-RR-IAELDPYLPVEVF 181 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHcc-CCCeE-EEEcCCEEcccccccccCChhhcccHH-HHHHH-HH-HHHHCCCCEEEEE
Confidence 589999999 8999998887654 2 33 33332 112222212110111123332 11100 00 011121 123333
Q ss_pred e-cCCCCCCCccCCCccEEEecCCCccCHHHHHH-HHhCCCcEE
Q 019445 83 G-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA-HLKGGAKKV 124 (341)
Q Consensus 83 ~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~-~l~~G~k~V 124 (341)
. ..++++++=-..++|+||+|+..+.++-.... +.+.|...|
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i 225 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVL 225 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 11222221002479999999999988766553 456666533
No 374
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.38 E-value=23 Score=35.81 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|.+|+.+++.|.+.. .++ .+.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDV-VVADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 58999999999999999998876 444 44554
No 375
>PLN02740 Alcohol dehydrogenase-like
Probab=67.09 E-value=22 Score=34.50 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=23.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~-elv~i~ 37 (341)
+|.|+|+|-+|..+++++.... . +++++.
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 7999999999999999887765 5 455553
No 376
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.99 E-value=17 Score=34.28 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=21.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVEL 33 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~el 33 (341)
.+|+|+|. |.+|+-+..+|.++. ..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~g-atV 185 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKN-ATV 185 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCC-CEE
Confidence 58999999 999999999888764 443
No 377
>PRK12939 short chain dehydrogenase; Provisional
Probab=66.97 E-value=9.8 Score=33.93 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=27.8
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..+...++-|.|+ |.||+.+++.|.++. .+++.+.
T Consensus 2 ~~~~~~~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~ 38 (250)
T PRK12939 2 ASNLAGKRALVTGAARGLGAAFAEALAEAG-ATVAFND 38 (250)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHcC-CEEEEEe
Confidence 44443468999999 999999999998875 5766663
No 378
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.90 E-value=26 Score=33.45 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
-+|.|.|+|-+|..+++++.... .+++.+.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEc
Confidence 37999999999999998887765 5666653
No 379
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=66.79 E-value=8.2 Score=39.11 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|+|+|+|.||+.+++.+.... ++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999998765 565444
No 380
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.64 E-value=7.5 Score=35.20 Aligned_cols=31 Identities=35% Similarity=0.386 Sum_probs=26.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+|.|.|+ |.+|+.+++.|.++. .+++++...
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~ 33 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG-HEVRAAVRN 33 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC-CEEEEEEeC
Confidence 7899999 999999999999985 677777643
No 381
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=66.39 E-value=7.3 Score=36.37 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=25.5
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|.|.|+ |++|+.+++.|.+++ .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 7999999 999999999999886 57766654
No 382
>PRK12829 short chain dehydrogenase; Provisional
Probab=66.38 E-value=8.3 Score=34.78 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=25.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 468999999 999999999999886 4665554
No 383
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=66.37 E-value=6.7 Score=36.30 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=25.0
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCC-CcEEEEee
Q 019445 8 KIGINGF-GRIGRLVARVALQRD-DVELVAVN 37 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p-~~elv~i~ 37 (341)
||.|.|+ |++|+.+++.|+++. +.+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999 999999999988764 57887764
No 384
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.36 E-value=11 Score=33.59 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=25.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEG-VNVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 57999999 999999999998876 4776664
No 385
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=66.21 E-value=7.3 Score=36.55 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.9
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
||-|.|+ |++|+.+++.|.++. +++++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 7999999 999999999998876 44444
No 386
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=66.08 E-value=11 Score=32.24 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=26.1
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+.||.|.|+|++|...++++...+ ++++.+..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 479999999999999999999998 77666644
No 387
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=65.98 E-value=20 Score=34.86 Aligned_cols=31 Identities=16% Similarity=0.568 Sum_probs=24.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
-+|.|.|+|-+|..+++++.... .+++.+..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~ 210 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG-LRVTVISR 210 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC-CeEEEEeC
Confidence 36899999999999998887765 56666643
No 388
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.93 E-value=8.3 Score=36.93 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.||||+|+|.+|+.+++.|..+. ++++...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~ 33 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGL 33 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999998775 5654433
No 389
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=65.65 E-value=9.8 Score=36.10 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~-elv~i~ 37 (341)
||+|+|+|.+|+.++..|...+-. +|+-+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 799999999999999999877643 555443
No 390
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=64.96 E-value=8.4 Score=38.26 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.6
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+|.|+|+|++|+.+++.|.... .+++.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g-~~v~vid 30 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGEN-NDVTVID 30 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 7999999999999999998764 6777664
No 391
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=64.92 E-value=3.8 Score=42.94 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
.||.|+|+|-.|-.++|.|..-.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcC
Confidence 68999999999999999998765
No 392
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.87 E-value=9.7 Score=36.62 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=24.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||||+|+|.+|+.++..++.+. ++++. .|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l-~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVA-WDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEE-EeC
Confidence 57999999999999999988875 66544 444
No 393
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=64.76 E-value=8.8 Score=36.26 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.7
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||-|.|+ |.+|+.+++.|.+.. .+++.+.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 7999999 999999999998875 5777664
No 394
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.59 E-value=21 Score=35.56 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.2
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.|.|+|.|.+|+.++|+|.+.. .++ .+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPF-AVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 5899999999999999999886 444 45554
No 395
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.52 E-value=9.3 Score=37.08 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+.+|.|+|+|..|..++..|.++. +++.-+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG-IKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC-CcEEEE
Confidence 479999999999999998887764 555444
No 396
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=64.52 E-value=7 Score=38.61 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.3
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
..+|||+|.||+|.-++-....+. +.++++
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G-~~ViG~ 38 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAG-FKVIGV 38 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcC-CceEeE
Confidence 379999999999998887776664 677666
No 397
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=64.47 E-value=8.4 Score=37.41 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=26.7
Q ss_pred eeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~ 38 (341)
.+|.|+|+|..|..+++.|.+ .|+.+|+-|..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~ 35 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITA 35 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeC
Confidence 589999999999999999876 46778877764
No 398
>PRK08226 short chain dehydrogenase; Provisional
Probab=64.18 E-value=12 Score=33.86 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..|...++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~ 37 (263)
T PRK08226 1 MGKLTGKTALITGALQGIGEGIARVFARHG-ANLILLD 37 (263)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEec
Confidence 55555578999999 999999999999886 5665553
No 399
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=64.04 E-value=8.1 Score=39.17 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=25.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|||+|.|.+|..+++.|.++. ++|. +.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~-v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKIS-VYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEE-EEeC
Confidence 48999999999999999999886 5654 4444
No 400
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=64.01 E-value=8.7 Score=36.67 Aligned_cols=31 Identities=35% Similarity=0.403 Sum_probs=24.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.||-|.|+ |+||+.+++.|.++. .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 48999999 999999999999875 34344433
No 401
>PLN02827 Alcohol dehydrogenase-like
Probab=64.00 E-value=24 Score=34.37 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=22.0
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcE-EEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i 36 (341)
-+|.|.|+|-+|..+++++.... +. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899999999999998877665 54 4444
No 402
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=63.95 E-value=12 Score=33.75 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=24.7
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~ 40 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAG-AEVILN 40 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcC-CEEEEE
Confidence 58999999 999999999998875 576654
No 403
>PRK06185 hypothetical protein; Provisional
Probab=63.54 E-value=9.5 Score=37.23 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|.+.+...|.|+|+|.+|..++..|.++. ++++-+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G-~~v~liE 36 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAG-VDVTVLE 36 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCC-CcEEEEe
Confidence 44445689999999999999998888764 6655554
No 404
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=63.42 E-value=12 Score=35.92 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=26.3
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+||-|.|+ |+||+.+++.|.+++ .+++.+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG-YTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 368999999 999999999999886 5776654
No 405
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=63.29 E-value=12 Score=38.64 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||+|+|+|..|...++.|++.. ++++.....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g-~~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG-LEVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CCCeEEecC
Confidence 58999999999999999998875 888776543
No 406
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=63.28 E-value=14 Score=34.82 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|.|+|+|-+|+.++..|.... +.-+.|.++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence 47999999999999999998765 432455554
No 407
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=63.15 E-value=9.3 Score=36.38 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=25.3
Q ss_pred CceeEEEEccCHHHHHHHHHHHc------CCCcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQ------RDDVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~------~p~~elv~i~~~ 39 (341)
+++||||+|+|-||..-+-.+++ -|..++.-+.|.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 45799999999999877655554 355666666665
No 408
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=63.14 E-value=9.6 Score=35.58 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.3
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 9 IGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
|-|.|+ |++|+.|++.|.++. .+++.+.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 678999 999999999999886 455566554
No 409
>PRK08264 short chain dehydrogenase; Validated
Probab=62.87 E-value=13 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.3
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
..+|-|.|+ |.+|+.+++.|.++..-+++.+
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEE
Confidence 358999999 9999999999998762144444
No 410
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.85 E-value=10 Score=39.04 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=31.4
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+.|+-|+|+|..|..++|.+..+|+...|++-|.
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDd 149 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDD 149 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHhCCCcceEEEECC
Confidence 35799999999999999999999998888888775
No 411
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.85 E-value=23 Score=35.33 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||.|+|+|.+|+..+|.|.+.. .++ .+.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V-~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEV-VVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 7999999999999999999886 454 44554
No 412
>PLN02686 cinnamoyl-CoA reductase
Probab=62.79 E-value=12 Score=36.21 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+++.+|-|-|+ |++|+.+++.|.++. .+++.+.+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r 85 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVD 85 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeC
Confidence 44578999999 999999999999875 57666544
No 413
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.71 E-value=42 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.||.|+|+|+.|+..+|.|.. ..++ .+.|.
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~--g~~v-~v~D~ 36 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN--KYDV-IVYDD 36 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC--CCEE-EEECC
Confidence 589999999999999999984 4565 45553
No 414
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.57 E-value=14 Score=33.04 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..++..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~ 37 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALAREG-ASVVVAD 37 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 33333467999999 999999999998875 5666654
No 415
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=62.52 E-value=11 Score=36.77 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=60.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcC---CCcEEEEeeCCCCChhhhhhhcc-cccccCcccCceeeecCCcceEECCEEEE
Q 019445 6 KIKIGINGF-GRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEKTLLFGEKPVA 80 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~---p~~elv~i~~~~~~~~~~a~ll~-~ds~~g~~~~~~v~~~~~~~l~i~g~~i~ 80 (341)
..-+-|-|| |++|.-+++-+... +...+ +|..+ +.+.+-..|+ ....-|+ .|. ...|.
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sl-avAGR--n~~KL~~vL~~~~~k~~~------------~ls--~~~i~ 67 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSL-AVAGR--NEKKLQEVLEKVGEKTGT------------DLS--SSVIL 67 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceE-EEecC--CHHHHHHHHHHHhhccCC------------Ccc--cceEE
Confidence 467899999 99999988877653 33333 55544 2222222221 1100000 111 01122
Q ss_pred EEecCCCCCCCccCCCccEEEecCCCccC--HHHHHHHHhCCCcEEEecCC
Q 019445 81 VFGFRNPEEIPWAKTGAEYVVESTGVFTD--KDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s--~~~~~~~l~~G~k~V~lSa~ 129 (341)
+....|++.++-=...+.+++-|.|.+.- ...+...++.|+..||||+-
T Consensus 68 i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 68 IADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred EecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 23222333332113578999999997763 45667789999999999974
No 416
>PRK07023 short chain dehydrogenase; Provisional
Probab=62.45 E-value=11 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 38999999 999999999999875 6666553
No 417
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=62.37 E-value=18 Score=35.03 Aligned_cols=96 Identities=22% Similarity=0.284 Sum_probs=53.3
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE-EEEecCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV-AVFGFRN 86 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i-~v~~~~~ 86 (341)
.|+|.|.|-+|...+.-+..-..-.|++| |...+...++.. +-.+| .+|.+.. .+.. .
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAv-D~~~~Kl~~A~~--fGAT~----------------~vn~~~~~~vv~--~ 246 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAV-DINPEKLELAKK--FGATH----------------FVNPKEVDDVVE--A 246 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEE-eCCHHHHHHHHh--cCCce----------------eecchhhhhHHH--H
Confidence 68999999999988887766554567777 331222222221 11111 1222211 0110 0
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l 126 (341)
..++ | ..++|++|+|+|.-..++.+-+...++=+.|++
T Consensus 247 i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 247 IVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 0111 1 238999999999988777776666555444543
No 418
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=62.34 E-value=9.9 Score=34.92 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
||.|.|+ |++|+.+++.|.++. .++..+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeC
Confidence 5889999 999999999998875 5766664
No 419
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=62.19 E-value=14 Score=34.90 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.7
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|..+.+.++-|.|+ |.||+++++.|.++. .+|+.+.
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~ 37 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRG-WHVIMAC 37 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEE
Confidence 55555578999999 999999999999886 5665553
No 420
>PRK06823 ornithine cyclodeaminase; Validated
Probab=61.95 E-value=16 Score=35.03 Aligned_cols=34 Identities=24% Similarity=0.137 Sum_probs=28.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
..+++|+|+|..++..++++..-..++-+.|.++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r 161 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR 161 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 4689999999999999999887555777888876
No 421
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.90 E-value=33 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=20.9
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
.+|.|+|- .-+|+.+..+|.++. ..+..+
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~g-atV~~~ 58 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDG-ATVYSC 58 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEe
Confidence 57888888 888888888887653 444444
No 422
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=61.86 E-value=13 Score=38.12 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.||||+|+|.+|+.+++.+..+. ++++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~ 36 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLY 36 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence 57999999999999999988775 666544
No 423
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.60 E-value=15 Score=35.28 Aligned_cols=111 Identities=13% Similarity=0.188 Sum_probs=55.4
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC-CCChhhhhhhcccc-cccCcccCceeeecCCcce-EECC-EEEEEEe
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP-FISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTL-LFGE-KPVAVFG 83 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~-~~~~~~~a~ll~~d-s~~g~~~~~~v~~~~~~~l-~i~g-~~i~v~~ 83 (341)
||.|+|+|-+|-|+++.|.... +.-+.|.|. ..+...+...|-+. +.-|+.+ .++-.+ .+ .+|. -.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G-vg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~K-aevaa~---~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-FGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSK-AQVAKE---AVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc-CCeEEEEcCCCcchhhcCcCccCChhHcCcHH-HHHHHH---HHHHHCCCCeEEEEe
Confidence 6899999999999999998654 444455554 12333333222221 1113322 111000 00 0011 1121111
Q ss_pred cCCCCC----CCccCCCccEEEecCCCccCHHHHHHH-HhCCCcEEE
Q 019445 84 FRNPEE----IPWAKTGAEYVVESTGVFTDKDKAAAH-LKGGAKKVV 125 (341)
Q Consensus 84 ~~~~~~----~~w~~~~~DvV~~at~~~~s~~~~~~~-l~~G~k~V~ 125 (341)
. +..+ .+| ..+.|+|+.|+....++.+.... .+.+..-+.
T Consensus 76 ~-~i~~~~~~~~f-~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~ 120 (312)
T cd01489 76 A-NIKDPDFNVEF-FKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120 (312)
T ss_pred c-cCCCccchHHH-HhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
Confidence 1 1111 122 24899999999988777666554 455654443
No 424
>PRK06180 short chain dehydrogenase; Provisional
Probab=61.25 E-value=14 Score=33.94 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.8
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+.++-|.|+ |.||+.+++.|.++. .+++.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG-HRVVGTV 35 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc-CEEEEEe
Confidence 357999999 999999999998875 6766664
No 425
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=61.07 E-value=25 Score=33.13 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=51.1
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
+|-|.|.|.+|..+++++.... ++++.+... .+. ...+.+ +|- . . .++........ ..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~-~~~--~~~~~~----~g~-~----------~-~i~~~~~~~~~--~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG-FRTVAISRG-SDK--ADLARK----LGA-H----------H-YIDTSKEDVAE--AL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CeEEEEeCC-hHH--HHHHHH----cCC-c----------E-EecCCCccHHH--HH
Confidence 7899999999999999888765 576666443 111 111111 110 0 0 01110000000 00
Q ss_pred CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
..| .++|++++|++...+.+.+-.++..+-+.+.++
T Consensus 224 --~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 224 --QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred --Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 112 368999999876666666666776666555554
No 426
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=60.94 E-value=8.9 Score=35.45 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=24.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+++|.+|.|++|..+++.|.++. -++|+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y 29 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY 29 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE
Confidence 37899999999999999999886 466554
No 427
>PRK08328 hypothetical protein; Provisional
Probab=60.78 E-value=33 Score=31.14 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
.||.|+|+|-+|.+++..|....
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999998765
No 428
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=60.61 E-value=17 Score=34.08 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=23.9
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|.|.|+ |-+|..+++++.... .+++++.+
T Consensus 141 ~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~ 171 (325)
T TIGR02825 141 TVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAG 171 (325)
T ss_pred EEEEeCCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 7899998 999999998887664 57666544
No 429
>PRK06398 aldose dehydrogenase; Validated
Probab=60.60 E-value=16 Score=33.28 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.8
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|.++...++-|.|+ |.||+.+++.|.++. .+++.+
T Consensus 1 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~ 36 (258)
T PRK06398 1 DLGLKDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINF 36 (258)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEE
Confidence 66655568999999 999999999998876 455544
No 430
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=60.48 E-value=14 Score=36.05 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=25.5
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~ 39 (341)
+.++-|.|. |++|+.|++.|.++. ..|+ .+.|.
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~i-rv~D~ 38 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEI-RVVDK 38 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEE-EEecc
Confidence 468999999 999999999999876 3443 44443
No 431
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=60.32 E-value=11 Score=36.94 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=23.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+||+|+|+|..|..++..|..++.++++-+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~ 30 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLF 30 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999988764444333
No 432
>PLN02650 dihydroflavonol-4-reductase
Probab=60.27 E-value=12 Score=35.66 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.9
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+.+|-|-|+ |+||+.+++.|.++. .+++++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~ 36 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG-YTVRATV 36 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEE
Confidence 468999999 999999999999875 5666553
No 433
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=60.14 E-value=13 Score=35.25 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.4
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQRD-DVELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p-~~elv~i 36 (341)
.+|-|.|+ |.+|+.+++.|.++. ..+++.+
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~ 36 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY 36 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999999 999999999998763 2466555
No 434
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=59.94 E-value=6.5 Score=38.02 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.7
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
..+||+|+|+||+++.+.+..-.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g 169 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG 169 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC
Confidence 46999999999999999886653
No 435
>PRK12744 short chain dehydrogenase; Provisional
Probab=59.90 E-value=15 Score=33.10 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=27.5
Q ss_pred CCCCC--ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDK--KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~--~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.+. ..++-|.|+ |.||+.++|.|.++. .+++.+.
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~ 39 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIH 39 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEe
Confidence 66543 258999999 999999999999875 5655554
No 436
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=59.79 E-value=12 Score=37.19 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=27.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcC-CCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~~~ 39 (341)
+||.|+|+|..|...++.|.++ ++.+|+-|...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 4899999999999999988764 57888888653
No 437
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=59.77 E-value=14 Score=35.39 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i 36 (341)
+||+|+|+ |.+|..++-.|...+-. ||+-+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLi 32 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALY 32 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEE
Confidence 48999999 99999999888766532 44433
No 438
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.76 E-value=18 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
|..+...++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 1 ~~~~~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~ 38 (252)
T PRK06077 1 MYSLKDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAK 38 (252)
T ss_pred CCCCCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 43333468999999 999999999998775 46555443
No 439
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=59.66 E-value=33 Score=31.30 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=21.5
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p 29 (341)
..||.|+|.|-+|.++++.|....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G 34 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG 34 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998765
No 440
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=59.29 E-value=12 Score=37.55 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=23.8
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
+.+|.|+|+|.+|.+++..|.++. +++.-+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-l~V~Li 31 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-VPVELY 31 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 358999999999999999998775 444334
No 441
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=59.15 E-value=12 Score=35.63 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=23.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
||-|.|+ |.+|+.+++.|.+++.-.++.+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 7999999 9999999999998763334433
No 442
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=59.03 E-value=69 Score=29.76 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=50.1
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN 86 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~ 86 (341)
-+|.|.|.|-+|..+++++.... +++..+... .+....+.+ +|. ...++ .. +
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G-~~vi~~~~~---~~~~~~~~~----~g~------------~~~~~------~~--~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG-PDVVLVGRH---SEKLALARR----LGV------------ETVLP------DE--A 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCC---HHHHHHHHH----cCC------------cEEeC------cc--c
Confidence 37899988999999999888775 666665432 222211111 110 00000 00 1
Q ss_pred CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445 87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125 (341)
Q Consensus 87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~ 125 (341)
. .+ ..++|++|+|+|.....+.+..+++.+.+.+.
T Consensus 209 ~--~~--~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 209 E--SE--GGGFDVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred c--cc--CCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 1 12 23799999999875555666666766665443
No 443
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=58.94 E-value=13 Score=37.51 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=25.0
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
..+|+|+|+|..|...++.|.+.. ++++.+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vfE 40 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVFE 40 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEEe
Confidence 478999999999999999888765 5555554
No 444
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=58.94 E-value=16 Score=36.18 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.+.||.|+|+|+.|..+++.|. .++++|+-|..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~-~~~~~ItlI~~ 41 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLD-PKKYNITVISP 41 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhC-cCCCeEEEEcC
Confidence 4579999999999999998874 34578877754
No 445
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=58.88 E-value=47 Score=31.91 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 95 ~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
.++|++++|+|.......+..+++.+.+.+.++
T Consensus 253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 378999999987656666667777776656544
No 446
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=58.78 E-value=32 Score=36.06 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445 6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV 81 (341)
Q Consensus 6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v 81 (341)
...|+|+|+ |.+|+++++.|.+..+=+|.+||-. ++...|.+.
T Consensus 10 p~svavigas~~~~~vg~~i~~nL~~~g~g~i~PVnp~------------~~~v~G~~a--------------------- 56 (598)
T COG1042 10 PKSIAVIGASERPGKLGYEILRNLLEYGQGKIYPVNPK------------YDEVLGVKA--------------------- 56 (598)
T ss_pred CceEEEeeccCCcchhHHHHHHHHHhcCCCceEecCcc------------ccccccccc---------------------
Confidence 457999998 6699999999998765566677643 222222111
Q ss_pred EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445 82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA 128 (341)
Q Consensus 82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa 128 (341)
+ .+..+++ ...|+.|-++|.....+...+.-++|+|-.++..
T Consensus 57 y--~s~~~lp---~~~dlav~~v~~~~~~~i~~~~~~kGv~~~i~is 98 (598)
T COG1042 57 Y--TSVADLP---DAPDLAVIVVPAKVVPEIVHELGEKGVKGAIVIS 98 (598)
T ss_pred c--chHhhCC---CCCCeeEEEechhhhHHHHHHhhccCCceEEEec
Confidence 1 1233343 3689999999999999999888888988655443
No 447
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=58.72 E-value=20 Score=35.09 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=28.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
++||||+|.|..|....-+|..|.++.|--.++.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~r 41 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRR 41 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEecccc
Confidence 4799999999999999999999888877655544
No 448
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=58.58 E-value=13 Score=35.92 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=26.1
Q ss_pred CceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVND 38 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~ 38 (341)
++.+|.|+|+|..|..++-.|.++ ..+.++-+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 457899999999999998888776 2366655543
No 449
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=58.52 E-value=56 Score=32.08 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=22.9
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+|.|.|+|-+|..+++++.... .+++.+.+.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLG-AAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence 6888888999999988877654 554445444
No 450
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=58.45 E-value=62 Score=30.49 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=49.5
Q ss_pred eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445 8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP 87 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~ 87 (341)
+|.|.|.|-+|+.+++++.... .++..+... .+.. .++.+ +| .. .+ ++..... ..
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G-~~v~~~~~~-~~~~--~~~~~----~g-~~----------~v-i~~~~~~-----~~ 226 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALG-AEVTAFSRS-PSKK--EDALK----LG-AD----------EF-IATKDPE-----AM 226 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CeEEEEcCC-HHHH--HHHHH----cC-Cc----------EE-ecCcchh-----hh
Confidence 6888778999999988887765 566565432 1111 11100 11 00 00 1100000 00
Q ss_pred CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445 88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127 (341)
Q Consensus 88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS 127 (341)
... ..++|++|+|++.....+.+..+++.+.+.+.++
T Consensus 227 ~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 227 KKA---AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred hhc---cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 111 2479999999998654565666676666555544
No 451
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=58.25 E-value=32 Score=32.45 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=24.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~~ 38 (341)
-+|-|.|+ |-+|..+++++.... . +++++.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 37999999 999999998877664 5 6666644
No 452
>PRK09291 short chain dehydrogenase; Provisional
Probab=58.21 E-value=16 Score=32.77 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=25.6
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.+|-|.|+ |.+|+.+++.|.++. .+++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 47999999 999999999999876 56666543
No 453
>PRK08589 short chain dehydrogenase; Validated
Probab=58.03 E-value=18 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.+...++-|.|+ |.||+++++.|.++. .+++.+.
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~ 37 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEG-AYVLAVD 37 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe
Confidence 66655568999999 999999999999886 5665553
No 454
>PRK06198 short chain dehydrogenase; Provisional
Probab=57.86 E-value=18 Score=32.60 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=28.0
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcE-EEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVE-LVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~e-lv~i 36 (341)
|+++...++-|.|+ |.+|+.+++.|.++. .+ ++.+
T Consensus 1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~G-~~~V~~~ 37 (260)
T PRK06198 1 MGRLDGKVALVTGGTQGLGAAIARAFAERG-AAGLVIC 37 (260)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHHCC-CCeEEEE
Confidence 66766678999999 999999999998875 45 4444
No 455
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=57.78 E-value=13 Score=38.06 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=24.3
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
++.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~vi 52 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG-VPVVLL 52 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 4578999999999999998887764 554444
No 456
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=57.72 E-value=13 Score=35.08 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
||-|.|+ |..|.+|.+.|. +..+++++...
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~ 32 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRA 32 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCc
Confidence 4999999 999999999887 67888888654
No 457
>PRK08017 oxidoreductase; Provisional
Probab=57.64 E-value=17 Score=32.61 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=24.9
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|-|.|+ |.||+.+++.|.++. .+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999 999999999998875 5666654
No 458
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=57.54 E-value=50 Score=31.33 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=22.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
-+|.|+|.|-+|..+++++.... + .++.+
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~ 203 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAG-ASKIIVS 203 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEE
Confidence 37899999999999999888775 5 45444
No 459
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=57.52 E-value=12 Score=36.21 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=22.7
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDD 30 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~ 30 (341)
..+|||+|||-.|+.+..-+..+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 4799999999999999999998874
No 460
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.48 E-value=17 Score=32.22 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=25.7
Q ss_pred CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
++.++-|.|+ |.+|+++++.|.++. .+++.+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 3468999999 999999999998775 676666
No 461
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.47 E-value=14 Score=34.13 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.1
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|-|.|+ |++|+.|++.|.+.. .+++++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG-HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC-CeEEEEeC
Confidence 4899999 999999999999873 57777754
No 462
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.36 E-value=19 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++-|.|+ |.+|+++++.|.++. .+++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999 999999999999875 5665553
No 463
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=57.29 E-value=15 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.6
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 6 KIKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
.+||+|+|+|-||..+.-.|.+.. .++..+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 358999999999998888777653 344444
No 464
>PRK05086 malate dehydrogenase; Provisional
Probab=57.21 E-value=17 Score=34.77 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=22.1
Q ss_pred eeEEEEcc-CHHHHHHHHHHHc-CCCc-EEEEe
Q 019445 7 IKIGINGF-GRIGRLVARVALQ-RDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~-~p~~-elv~i 36 (341)
+||+|+|+ |.+|..++..|.. .+.. +++.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~ 33 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLY 33 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEE
Confidence 48999999 9999999988754 3433 44443
No 465
>PRK14851 hypothetical protein; Provisional
Probab=57.15 E-value=17 Score=38.73 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p 29 (341)
.||+|+|+|-+|..++..|..-.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~G 66 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTG 66 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhC
Confidence 68999999999999999887654
No 466
>PRK09126 hypothetical protein; Provisional
Probab=57.08 E-value=14 Score=35.71 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=25.7
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+.+|.|+|+|..|..++..|.++. ++++-+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G-~~v~v~E 33 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSG-LKVTLIE 33 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC-CcEEEEe
Confidence 5688999999999999998888764 6655554
No 467
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=57.00 E-value=17 Score=34.96 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=26.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
++.+|.|+|+|.+|...+..|.++.. +|+-+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~ 35 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEA 35 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEec
Confidence 45799999999999999988888763 6666653
No 468
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=56.86 E-value=12 Score=36.61 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p 29 (341)
..||.|+|+|-+|.++++.|....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAG 158 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 368999999999999999998775
No 469
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=56.63 E-value=26 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
-+|.|.|+|-+|..+++++......+++.+..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36999999669999999887765466666654
No 470
>PLN02583 cinnamoyl-CoA reductase
Probab=56.57 E-value=19 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=25.5
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|-|.|+ |+||+.+++.|+++. .+++++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~ 37 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAAV 37 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 57999999 999999999999876 5776664
No 471
>PLN00106 malate dehydrogenase
Probab=56.56 E-value=16 Score=35.10 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.0
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCc
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDV 31 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~ 31 (341)
+.||+|+|+ |.+|..++-.|..++..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~ 44 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV 44 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 469999999 99999999988866543
No 472
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=56.54 E-value=14 Score=35.14 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+|-|-|+ |+||+.+++.|.+.. .+|+.+.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG-YEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 7899999 999999999999875 5777764
No 473
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.53 E-value=58 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.5
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
.+|.|.|+|.+|+..+|.|.+.. .+++ +.|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~-~~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVT-VNDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 57999999889999999999876 4544 4453
No 474
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=56.51 E-value=16 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=28.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
|+..|.|+|+|..|...++.|.+.. ++++-+-.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk 34 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEK 34 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC-CeEEEEec
Confidence 5689999999999999999999987 77776654
No 475
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=56.39 E-value=15 Score=35.96 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.2
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|.|+|+|.+|...++.|.+.. .+++-+-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g-~~V~vle 31 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG-YQVTVFD 31 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 48999999999999999888764 5655553
No 476
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=56.14 E-value=17 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~ 31 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQG-HKVIATG 31 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence 6899999 999999999999875 5665553
No 477
>PTZ00188 adrenodoxin reductase; Provisional
Probab=56.13 E-value=17 Score=37.08 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=22.5
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEE
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELV 34 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv 34 (341)
...||+|+|+|..|...++.|+.+...++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~Vt 67 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVD 67 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEE
Confidence 457999999999999998866544344543
No 478
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.81 E-value=12 Score=36.32 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred ceeEEEEccCHHHHHHHHHHHcCC
Q 019445 6 KIKIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 6 ~irV~I~G~G~iG~~llr~l~~~p 29 (341)
..||.|+|+|-+|.++++.|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 368999999999999999998654
No 479
>PRK09134 short chain dehydrogenase; Provisional
Probab=55.73 E-value=23 Score=32.01 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=25.8
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
..++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~ 41 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHG-FDVAVHYN 41 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 458999999 999999999998876 56655543
No 480
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.64 E-value=35 Score=33.51 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=26.8
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP 39 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~ 39 (341)
+|-+-|+ |++|+.+++-|+...+..|.+..-.
T Consensus 2 ~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA 34 (382)
T COG3320 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRA 34 (382)
T ss_pred eEEEecCchHhHHHHHHHHHhcCCCcEEEEEec
Confidence 5778899 9999999998888877888887654
No 481
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.48 E-value=64 Score=30.57 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=21.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcE-EEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVE-LVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i 36 (341)
-+|-|.|+|-+|..+++++.... .+ ++.+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~ 197 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG-AGRIIAV 197 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 37899988999999998877664 54 4444
No 482
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=55.15 E-value=21 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=25.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~ 37 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEG-ARVVIAD 37 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEc
Confidence 57999999 999999999999886 5666553
No 483
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.15 E-value=20 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=25.2
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
.++-|.|+ |.+|++++|.|.++. .+++.+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~ 36 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG-YDIAVNYA 36 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcC
Confidence 47999999 999999999999886 46554433
No 484
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=55.12 E-value=52 Score=30.59 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=24.3
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|-|.|+ |-+|..+++++.... ++++++.+
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~ 176 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAG 176 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 6899998 999999999887764 67766654
No 485
>PRK05993 short chain dehydrogenase; Provisional
Probab=55.05 E-value=23 Score=32.58 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.9
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G-~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG-WRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 47999999 999999999998875 5666653
No 486
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=54.97 E-value=68 Score=30.53 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=23.8
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeC
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVND 38 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~ 38 (341)
-+|-|.|.|-+|..+++++.... . .++.+..
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~ 210 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDG 210 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcC
Confidence 37899988999999998887765 5 6666643
No 487
>PRK06179 short chain dehydrogenase; Provisional
Probab=54.93 E-value=21 Score=32.43 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=25.0
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~ 35 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAG-YRVFGTS 35 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999 999999999999875 5666554
No 488
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=54.90 E-value=17 Score=34.87 Aligned_cols=32 Identities=13% Similarity=0.362 Sum_probs=26.1
Q ss_pred CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445 5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~ 37 (341)
++..|.|+|+|.+|..++..|.++. .+++-|.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g-~~V~lie 33 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRG-LRVLGLD 33 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC-CeEEEEe
Confidence 4578999999999999999998875 6665554
No 489
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.87 E-value=24 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCCCc-eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 1 MAGDKK-IKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 1 ~~~~~~-irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|+++.+ .++-|.|+ |.||+.+++.|.++. .+++.+.
T Consensus 1 m~~~l~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~ 38 (255)
T PRK06463 1 YSMRFKGKVALITGGTRGIGRAIAEAFLREG-AKVAVLY 38 (255)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 555432 57999999 999999999999876 4665543
No 490
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=54.86 E-value=28 Score=33.46 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=23.6
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVN 37 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~ 37 (341)
-+|.|.|+|-+|..+++++.... + .++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 37899999999999999887765 5 565554
No 491
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=54.68 E-value=32 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.3
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i 36 (341)
-+|.|.|+|-+|..+++++.... + .++.+
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 37899988999999999888775 4 56666
No 492
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=54.63 E-value=14 Score=32.71 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCC
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDD 30 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~ 30 (341)
|-.+...++-|.|+ |.+|+.+++.|.++..
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 44444468999999 9999999999988763
No 493
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.57 E-value=18 Score=34.39 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.8
Q ss_pred eEEEEccCHHHHHHHHHHHcCC
Q 019445 8 KIGINGFGRIGRLVARVALQRD 29 (341)
Q Consensus 8 rV~I~G~G~iG~~llr~l~~~p 29 (341)
||+|+|+|.+|..+...|.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC
Confidence 7999999999999999988764
No 494
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.52 E-value=46 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.3
Q ss_pred eeEEEEcc-CHHHHHHHHHHHcCCCcEEEE
Q 019445 7 IKIGINGF-GRIGRLVARVALQRDDVELVA 35 (341)
Q Consensus 7 irV~I~G~-G~iG~~llr~l~~~p~~elv~ 35 (341)
.+|.|+|. +.+|+-+..+|.++. ..+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~-atVt~ 187 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAG-ATVTI 187 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEE
Confidence 57899999 666999988887653 44433
No 495
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.50 E-value=23 Score=33.06 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
|..|++.++-|-|+ +=||+++++.|.++. ..|+-|.-
T Consensus 1 ~~~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR 38 (265)
T COG0300 1 PGPMKGKTALITGASSGIGAELAKQLARRG-YNLILVAR 38 (265)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC
Confidence 34556678999999 999999999999986 56666653
No 496
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=54.49 E-value=20 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.198 Sum_probs=25.2
Q ss_pred ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445 6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN 37 (341)
Q Consensus 6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~ 37 (341)
|.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~~v~~~~ 33 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-WSVGINY 33 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 358999999 999999999999876 5665443
No 497
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.43 E-value=5.6 Score=31.91 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.0
Q ss_pred CCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445 95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP 129 (341)
Q Consensus 95 ~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~ 129 (341)
.++|+||+|+|.....+.+-.+++.|-+.+++...
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESST
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEcc
Confidence 37999999999887878888888888777776544
No 498
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.42 E-value=28 Score=32.90 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=24.2
Q ss_pred eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445 8 KIGINGF-GRIGRLVARVALQRDDVELVAVND 38 (341)
Q Consensus 8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~ 38 (341)
+|.|+|+ |-+|..+++++.... ++++.+.+
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLKG-CYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHcC-CEEEEEeC
Confidence 7899999 999999999887765 67666543
No 499
>PRK08265 short chain dehydrogenase; Provisional
Probab=54.35 E-value=23 Score=32.18 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe
Q 019445 1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i 36 (341)
|..+...++-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~ 36 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAG-ARVAIV 36 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 65554568999999 999999999999876 455444
No 500
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=54.35 E-value=15 Score=36.29 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=23.9
Q ss_pred eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445 7 IKIGINGFGRIGRLVARVALQRDDVELVAV 36 (341)
Q Consensus 7 irV~I~G~G~iG~~llr~l~~~p~~elv~i 36 (341)
|||.|+|.||+|....-.+.++. -+++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~v 29 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCV 29 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 48999999999998888887775 467777
Done!