Query 019446
Match_columns 341
No_of_seqs 123 out of 196
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 16:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 6.7E-36 2.3E-40 228.8 5.0 62 153-214 2-64 (64)
2 2l1q_A Liver-expressed antimic 15.7 63 0.0021 22.9 1.5 18 29-51 2-19 (40)
3 3hde_A Lysozyme; antimicrobial 7.2 2.2E+02 0.0076 24.0 2.3 25 154-178 137-161 (165)
4 2anv_A Lysozyme; direct method 6.9 1.4E+02 0.0049 24.4 1.0 21 155-176 123-143 (146)
5 1xju_A Lysozyme; secreted inac 6.9 2.6E+02 0.009 23.4 2.6 26 155-180 128-153 (163)
6 1qfq_B N36, 36-MER N-terminal 6.3 2.6E+02 0.009 19.0 1.8 15 167-181 4-18 (35)
7 1xjt_A Lysozyme; open conforma 6.0 2.7E+02 0.0091 24.2 2.3 27 154-180 155-181 (191)
8 2k2w_A Recombination and DNA r 5.3 2E+02 0.0068 24.2 0.9 12 154-165 18-29 (118)
9 3gxv_A Replicative DNA helicas 5.2 3.7E+02 0.013 21.3 2.4 24 154-177 88-111 (123)
10 3q12_A Pantoate--beta-alanine 3.9 2.3E+02 0.0078 26.8 0.3 36 128-163 23-65 (287)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=6.7e-36 Score=228.82 Aligned_cols=62 Identities=63% Similarity=0.987 Sum_probs=58.2
Q ss_pred CCceeecchhhHHHHHHHHHHHHHHHhhhhh-hcCCCcchhchhHHhhhccCCCCCccccccc
Q 019446 153 EEPVYVNAKQYHGILRRRQLRAKAELERKLI-KVRKPYLHESRHLHAMRRARGCGGRFVNTKK 214 (341)
Q Consensus 153 eePiyVNaKQY~rIlrRRq~Rak~e~e~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~kk 214 (341)
++|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+|||||++++
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7899999999999999999999999999985 8899999999999999999999999998764
No 2
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=15.67 E-value=63 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.769 Sum_probs=14.3
Q ss_pred cccccCCCCCCcccccccCCCCC
Q 019446 29 QPWWRGVGHDSTSRAMLQGGIGN 51 (341)
Q Consensus 29 ~PWW~~~G~~~~~~a~~g~~~s~ 51 (341)
-|.||++|.-| +|++|-+
T Consensus 2 TP~WR~vs~kP-----~GA~Crd 19 (40)
T 2l1q_A 2 TPFWRGVSLRP-----IGASCRD 19 (40)
T ss_dssp CCTTSSCSSBC-----TTSBCSS
T ss_pred cchhhhhcCCc-----cchhhcc
Confidence 48999999987 6777665
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.17 E-value=2.2e+02 Score=24.02 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=19.8
Q ss_pred CceeecchhhHHHHHHHHHHHHHHH
Q 019446 154 EPVYVNAKQYHGILRRRQLRAKAEL 178 (341)
Q Consensus 154 ePiyVNaKQY~rIlrRRq~Rak~e~ 178 (341)
.-+|++-|-..++.+||++..++=+
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3567788899999999998876544
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=6.93 E-value=1.4e+02 Score=24.40 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=16.7
Q ss_pred ceeecchhhHHHHHHHHHHHHH
Q 019446 155 PVYVNAKQYHGILRRRQLRAKA 176 (341)
Q Consensus 155 PiyVNaKQY~rIlrRRq~Rak~ 176 (341)
-+|++-| ..++.+||++.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999988764
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.88 E-value=2.6e+02 Score=23.42 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=20.5
Q ss_pred ceeecchhhHHHHHHHHHHHHHHHhh
Q 019446 155 PVYVNAKQYHGILRRRQLRAKAELER 180 (341)
Q Consensus 155 PiyVNaKQY~rIlrRRq~Rak~e~e~ 180 (341)
-+|++-|...++++||++.+.+=+..
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 56777788999999999988765543
No 6
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.26 E-value=2.6e+02 Score=19.03 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhh
Q 019446 167 LRRRQLRAKAELERK 181 (341)
Q Consensus 167 lrRRq~Rak~e~e~k 181 (341)
-|||++||...++=|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 478888876555544
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=6.04 E-value=2.7e+02 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=20.8
Q ss_pred CceeecchhhHHHHHHHHHHHHHHHhh
Q 019446 154 EPVYVNAKQYHGILRRRQLRAKAELER 180 (341)
Q Consensus 154 ePiyVNaKQY~rIlrRRq~Rak~e~e~ 180 (341)
.-+|++-|...++.+||++.+.+=+..
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 356777788999999999988765543
No 8
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.28 E-value=2e+02 Score=24.17 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.9
Q ss_pred CceeecchhhHH
Q 019446 154 EPVYVNAKQYHG 165 (341)
Q Consensus 154 ePiyVNaKQY~r 165 (341)
.=||.|+|||.+
T Consensus 18 tFvFLn~KQ~kk 29 (118)
T 2k2w_A 18 VFLFLNAKQYKK 29 (118)
T ss_dssp EEEESCSSTHHH
T ss_pred EEEEeCHHHHHH
Confidence 468999999975
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=5.21 E-value=3.7e+02 Score=21.33 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.3
Q ss_pred CceeecchhhHHHHHHHHHHHHHH
Q 019446 154 EPVYVNAKQYHGILRRRQLRAKAE 177 (341)
Q Consensus 154 ePiyVNaKQY~rIlrRRq~Rak~e 177 (341)
-|--.|.+.|-+|+|.+..|.++-
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li 111 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLF 111 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999888877643
No 10
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=3.93 E-value=2.3e+02 Score=26.77 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=20.8
Q ss_pred cccccccCCCCCCCCCCC-CCCCCC---CC---Cceeecchhh
Q 019446 128 VGHSIVHPQSMGVHSARM-ALPLEM---AE---EPVYVNAKQY 163 (341)
Q Consensus 128 ~gh~i~~~q~~G~~~~r~-~LP~e~---~e---ePiyVNaKQY 163 (341)
-|..|+.-+.+|.-|... .|--.. .+ --|||||-||
T Consensus 23 ~g~~IgfVPTMG~LH~GHlsLv~~Ar~~~d~vVVSIFVNP~QF 65 (287)
T 3q12_A 23 EGKRIALVPTMGNLHEGHMTLVDEAKTRADVVVVTIFVNPLQF 65 (287)
T ss_dssp TTCCEEEEEECSSCCHHHHHHHHHHHTTSSEEEEEECCCGGGC
T ss_pred cCCeEEEEcCCCcccHHHHHHHHHHHHhCCEEEEEeccCcccC
Confidence 366787777777755221 221111 12 3689999995
Done!